Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004948.1 Hibiscus syriacus cultivar Beakdansim tig00011123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63192

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
526--686
76
2.1
77
93
3
272
38
13
9
38
1.77
2407--3201
278
2.8
280
80
7
827
47
6
13
32
1.68
12775--12825
17
3.1
17
73
21
63
47
0
0
52
1.00
18861--18981
31
3.9
31
76
1
73
33
23
19
23
1.97
18886--18981
31
3.1
31
78
0
120
34
21
18
25
1.96
25620--25654
18
1.9
18
100
0
70
40
11
5
42
1.65
28768--28796
6
4.8
6
100
0
58
17
0
31
51
1.45
28768--28818
18
2.8
18
84
0
57
25
1
21
50
1.59
31330--31376
15
3.1
16
79
11
55
53
0
0
46
1.00
31327--31402
35
2.2
34
92
2
125
50
0
0
50
1.00
31327--31427
35
2.9
34
85
10
116
48
0
0
51
1.00
31791--31897
41
2.6
41
98
0
205
30
9
28
31
1.88
34058--34704
106
6.2
106
90
4
1039
33
25
18
22
1.97
34479--34634
43
3.4
42
66
17
114
33
25
18
22
1.96
36236--36294
19
3.1
19
83
14
77
32
1
0
66
1.02
36233--36295
22
3.1
21
74
25
64
31
1
0
66
1.01
36234--36280
15
3.2
15
82
8
53
31
2
0
65
1.04
36233--36312
39
2.1
39
83
9
101
30
3
1
65
1.18
36246--36295
21
2.5
20
80
20
61
32
0
0
68
0.90
36648--36779
68
1.9
68
93
0
228
32
25
13
28
1.94
40610--41012
81
5.0
81
84
2
495
28
20
13
37
1.90
40982--41169
68
2.8
67
90
3
304
29
25
15
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41855--42019
75
2.2
73
88
2
231
25
23
16
33
1.96
44918--44977
31
1.9
31
82
0
75
41
11
5
41
1.63
46751--46784
16
2.1
16
94
0
59
47
0
35
17
1.48
47015--47040
2
13.0
2
100
0
52
0
0
50
50
1.00
55060--55249
52
3.5
54
81
10
228
32
17
19
30
1.95
55600--55648
21
2.3
21
89
6
73
38
8
20
32
1.82
55799--55839
21
2.0
21
100
0
82
21
19
29
29
1.98
55828--55860
16
2.1
16
94
0
57
24
36
15
24
1.93

Tables:   1

The End!