genome.fa.s4949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004949.1 Hibiscus syriacus cultivar Beakdansim tig00011124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55437

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3276--3340	19	3.4	19	82	6	78	18	24	29	27	1.98
3334--3375	17	2.4	18	88	4	59	16	38	23	21	1.93
6099--6156	3	19.3	3	87	0	80	67	5	0	27	1.12
10997--11078	36	2.3	34	83	8	92	26	4	1	67	1.19
11075--11136	23	2.7	22	82	7	79	19	16	9	54	1.68
11097--11291	105	1.9	105	85	2	275	18	12	15	53	1.73
18236--18314	41	1.9	41	100	0	158	44	13	10	31	1.78
19569--19598	2	15.0	2	100	0	60	50	0	0	50	1.00
23322--23549	77	2.9	80	77	8	263	24	13	25	37	1.91
25811--26657	163	5.0	171	82	6	1079	28	21	19	30	1.97
25811--26625	334	2.4	334	97	0	1504	28	21	19	30	1.98
27939--28005	27	2.5	27	90	0	107	26	17	19	35	1.94
39467--39529	33	1.9	33	90	3	101	38	42	6	12	1.68
39471--39541	32	2.2	33	82	9	85	35	42	9	12	1.76
42517--42602	24	3.5	24	71	7	75	43	18	17	20	1.89
42517--42590	23	3.2	23	74	1	76	41	18	17	21	1.90
46624--47211	105	5.6	105	95	0	1014	22	22	18	36	1.95
48130--48202	8	9.0	8	84	14	96	10	13	0	75	1.05
48130--48202	17	4.5	17	83	14	100	10	13	0	75	1.05
48130--48202	25	3.0	25	83	15	98	10	13	0	75	1.05
48165--48218	26	2.2	24	83	12	65	11	16	0	72	1.12
48130--48217	32	2.7	31	80	15	81	10	14	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48136--48218	18	4.4	18	81	12	87	10	14	0	74	1.07

Tables:   1

The End!