genome.fa.s495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000495.1 Hibiscus syriacus cultivar Beakdansim tig00000942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75518

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1919--1960	12	3.4	12	86	3	57	50	21	23	4	1.68
3217--3282	33	2.0	33	84	0	87	34	3	9	53	1.48
4383--4558	36	4.8	36	85	6	203	44	24	9	21	1.82
9165--9215	19	2.6	19	78	3	57	49	9	11	29	1.72
10983--11011	2	14.5	2	100	0	58	48	0	0	51	1.00
12099--12145	24	1.9	25	83	12	62	38	0	21	40	1.53
12246--12318	18	3.9	18	80	7	92	20	20	30	28	1.98
17842--17940	2	49.5	2	100	0	198	49	0	0	50	1.00
19029--19075	24	1.9	25	83	12	62	38	0	21	40	1.53
19176--19248	18	3.9	18	84	7	101	20	21	30	27	1.98
20047--20091	19	2.4	19	100	0	90	35	15	20	28	1.93
19979--20168	96	2.0	96	90	0	299	36	9	18	35	1.84
20068--20424	76	4.7	77	84	2	443	36	9	18	35	1.84
20781--20824	23	2.0	22	82	8	54	56	9	9	25	1.59
20841--20971	71	1.9	69	85	9	185	29	11	12	47	1.76
21734--21806	20	3.7	20	92	0	110	30	17	23	28	1.97
22812--22916	42	2.5	42	93	0	165	26	37	12	23	1.91
23126--23178	28	2.0	26	85	7	70	24	24	20	30	1.99
23461--23496	18	2.0	18	100	0	72	33	33	0	33	1.58
24622--24991	77	4.7	77	75	10	293	39	14	7	39	1.73
24615--24922	161	1.9	160	82	5	388	38	14	8	38	1.76
26513--26550	18	2.0	20	90	10	62	68	5	0	26	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28310--28365	21	2.6	22	77	2	60	53	1	1	42	1.21
29268--29340	19	3.7	19	92	3	110	35	24	9	30	1.87
29189--29339	40	3.8	40	88	5	175	39	23	11	25	1.88
29149--29346	20	10.0	19	75	11	112	36	25	11	25	1.90
30312--30365	24	2.2	24	90	0	81	22	16	20	40	1.91
33089--33138	25	2.0	25	96	0	91	26	8	22	44	1.80
33524--33560	18	2.1	18	89	0	56	32	5	10	51	1.60
34661--34722	29	2.1	29	81	0	70	32	16	27	24	1.96
34735--34836	20	5.1	20	81	0	123	23	18	21	36	1.95
34724--34832	40	2.7	40	81	0	146	22	20	21	35	1.96
34905--35022	37	3.5	37	69	21	112	50	16	1	30	1.55
34893--35049	64	2.5	64	94	2	271	51	17	1	29	1.56
36407--36525	21	5.7	21	80	3	123	23	19	35	21	1.96
36407--36498	42	2.2	42	94	0	157	21	20	36	20	1.95
36407--36528	42	2.9	42	87	0	145	23	19	35	21	1.96
36860--36975	21	5.5	21	67	10	76	31	33	12	22	1.92
38672--38753	20	4.2	20	87	7	105	50	18	17	14	1.79
38667--38754	40	2.2	39	86	4	122	50	17	15	17	1.79
38751--38792	20	2.1	20	82	8	50	16	14	19	50	1.79
39126--39176	22	2.3	22	86	0	75	19	11	45	23	1.83
39331--39416	20	4.3	20	92	0	145	17	13	23	45	1.84
39331--39481	40	3.8	40	78	12	123	19	13	25	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39331--39480	60	2.5	60	79	9	146	20	14	25	40	1.89
41492--41671	100	1.8	100	87	2	272	32	3	11	52	1.55
43907--43979	27	2.7	27	89	0	92	39	13	2	43	1.59
45400--45466	23	2.9	23	77	0	80	35	25	17	20	1.95
51911--51970	24	2.4	25	83	2	68	30	20	25	25	1.99
51965--52041	23	3.3	23	79	0	100	32	24	23	19	1.97
56393--56437	22	2.0	22	100	0	90	31	13	13	42	1.82
57507--57624	59	2.0	59	89	0	182	25	16	21	36	1.94
62677--62705	14	2.1	14	100	0	58	48	6	0	44	1.29
65050--65074	3	8.3	3	100	0	50	68	0	0	32	0.90
66317--66347	10	3.1	10	90	0	53	12	0	38	48	1.42
73853--73877	13	1.9	13	100	0	50	60	0	0	40	0.97

Tables:   1

The End!