Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004950.1 Hibiscus syriacus cultivar Beakdansim tig00011126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80259

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
391--446
23
2.5
23
82
2
69
37
14
12
35
1.84
873--1588
109
6.6
111
84
10
891
36
14
20
28
1.93
873--1588
215
3.3
218
84
10
890
36
14
20
28
1.93
1854--1910
19
3.0
20
82
5
64
33
0
1
64
1.04
1845--1910
22
3.0
22
81
2
78
30
0
3
66
1.06
1859--1907
25
2.0
25
83
0
62
34
0
2
63
1.06
1855--1910
3
20.0
3
78
14
57
33
0
1
64
1.04
3221--3269
12
4.2
11
79
10
53
28
4
2
65
1.22
3270--3301
15
2.2
14
94
5
55
59
0
0
40
0.97
3541--3582
22
1.9
22
85
0
57
47
0
0
52
1.00
8341--8391
20
2.5
20
90
0
75
33
25
23
17
1.96
9278--9328
20
2.5
20
83
0
75
29
19
21
29
1.98
18982--19031
17
2.9
17
69
0
55
26
12
6
56
1.58
19308--19364
19
2.8
21
71
17
57
40
15
15
28
1.88
21695--21731
19
2.0
19
89
5
58
18
10
16
54
1.71
22604--22683
21
3.7
21
82
12
108
41
26
12
20
1.87
32198--32241
19
2.2
20
92
4
72
31
18
20
29
1.96
40144--40217
36
2.1
36
100
0
148
36
21
24
17
1.95
40362--40398
18
2.1
18
94
0
65
35
13
21
29
1.92
42751--42975
116
1.9
116
94
0
396
34
22
20
22
1.96
48920--48964
21
2.1
21
95
0
81
26
53
15
4
1.61
49981--50023
17
2.6
16
78
10
50
23
6
9
60
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50069--50135
28
2.3
29
82
2
73
25
11
5
56
1.57
54744--54788
22
2.0
22
100
0
90
26
22
13
37
1.91
56640--56699
9
6.3
9
79
11
66
16
26
28
28
1.97
56639--56693
19
2.8
19
91
2
83
18
23
29
29
1.98
56687--56720
14
2.4
14
95
0
59
14
47
26
11
1.79
63923--63982
9
6.3
9
79
11
66
15
26
30
28
1.96
63922--63980
19
3.1
19
87
2
82
16
23
30
28
1.97
63970--64016
14
3.4
14
96
0
85
14
48
23
12
1.78
64012--64049
17
2.2
17
90
0
58
21
44
21
13
1.85
64931--65054
63
2.0
63
82
6
153
17
27
29
25
1.98
69030--69062
2
16.5
2
100
0
66
48
0
0
51
1.00
76003--76081
31
2.5
32
91
2
133
26
13
8
50
1.71

Tables:   1

The End!