Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004951.1 Hibiscus syriacus cultivar Beakdansim tig00011133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90040

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
918--2011
567
1.9
564
87
6
1602
40
13
19
26
1.89
4014--4073
23
2.6
22
74
10
57
65
10
16
8
1.47
5340--5391
24
2.2
24
82
0
59
28
23
19
28
1.98
15045--15084
17
2.4
17
95
0
71
42
7
0
50
1.30
16042--16075
16
2.1
17
89
10
54
23
0
5
70
1.09
16828--16863
9
3.9
9
85
7
54
83
11
5
0
0.80
16827--16863
19
2.1
17
90
10
56
81
13
5
0
0.86
20641--20674
16
2.1
17
89
10
54
23
0
5
70
1.09
21271--21302
10
3.2
10
95
0
55
34
9
34
21
1.86
21467--21647
91
2.0
90
81
4
211
21
25
21
30
1.98
45009--45073
3
22.0
3
81
9
71
27
0
3
69
1.03
45073--45111
11
3.5
11
86
6
53
76
0
0
23
0.78
52142--52171
10
2.9
10
95
5
51
86
0
13
0
0.57
52138--52171
12
2.8
12
90
4
50
85
0
14
0
0.60
57578--58264
76
9.0
76
96
0
1250
21
20
21
36
1.95
58413--58474
3
21.0
3
83
3
72
29
0
3
67
1.06
58406--58474
18
3.9
18
79
11
70
27
0
2
69
1.02
58402--58449
20
2.5
19
93
3
78
22
0
2
75
0.91
58474--58508
11
3.1
11
95
4
61
82
0
0
17
0.66
58473--58510
19
2.0
20
89
5
60
78
0
0
21
0.74
62423--62478
11
4.8
11
74
20
51
78
3
16
1
0.97
65393--65446
2
27.5
2
96
3
101
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70628--70707
35
2.2
37
88
4
119
32
36
3
27
1.75
76275--76354
35
2.2
37
88
4
119
31
36
3
28
1.75
79909--79966
19
3.0
20
83
14
61
24
10
0
65
1.23
81257--81312
30
1.9
29
82
13
71
33
14
19
32
1.92
83493--83519
13
2.1
13
100
0
54
37
0
29
33
1.58
87261--87370
35
3.2
35
80
1
123
28
35
2
33
1.72
87519--87556
15
2.5
15
91
4
58
15
28
0
55
1.41
87749--87787
17
2.2
18
86
13
55
76
7
15
0
0.99
88930--88999
35
2.0
36
91
2
115
28
34
5
31
1.81

Tables:   1

The End!