genome.fa.s4952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004952.1 Hibiscus syriacus cultivar Beakdansim tig00011138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88059

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4272--4367	39	2.5	39	84	6	124	40	10	16	32	1.83
14383--14428	22	2.1	22	95	0	83	10	21	4	63	1.44
14945--14986	21	2.0	22	86	9	61	35	19	0	45	1.50
21538--21584	24	2.0	24	95	0	85	27	10	25	36	1.89
21538--21597	24	2.5	24	86	5	68	30	11	21	36	1.89
22026--22060	17	2.1	17	89	5	54	37	0	17	45	1.48
23915--23963	24	2.0	24	96	0	89	24	10	30	34	1.89
23915--23976	24	2.6	24	87	5	72	27	11	25	35	1.90
25309--25335	5	5.4	5	100	0	54	40	22	18	18	1.91
32456--32637	73	2.4	73	81	3	193	25	18	25	29	1.98
33269--33320	20	2.6	20	82	14	63	57	25	0	17	1.40
34836--34895	23	2.6	23	100	0	120	33	16	25	25	1.96
39821--39964	74	1.9	74	87	0	207	24	19	25	30	1.98
41373--41437	17	3.7	16	71	26	51	67	4	1	26	1.18
41511--41916	35	11.6	35	79	11	138	41	9	4	44	1.57
41568--41606	12	3.2	12	96	0	69	43	10	0	46	1.37
41580--41908	33	9.8	33	82	9	366	41	8	3	45	1.52
44134--44249	29	4.0	29	92	2	189	34	28	15	21	1.94
45550--45680	63	2.1	63	100	0	262	32	16	13	38	1.87
64076--64105	15	2.0	15	100	0	60	13	26	46	13	1.80
70294--70343	25	2.0	25	100	0	100	28	20	24	28	1.99
74255--74363	34	3.0	36	89	9	159	30	6	20	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76062--76121	21	3.2	21	65	30	62	31	5	20	43	1.73
76055--76162	35	3.0	36	90	4	173	29	5	18	46	1.72
81675--81730	23	2.4	23	90	0	94	26	41	21	10	1.86
81900--81991	3	31.0	3	78	6	98	32	1	0	66	0.99
83807--84075	149	1.8	146	89	5	425	38	6	7	47	1.58
84598--84636	13	2.9	14	85	11	55	28	0	0	71	0.86

Tables:   1

The End!