Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004953.1 Hibiscus syriacus cultivar Beakdansim tig00011139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73964

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13325--13369
22
2.2
19
84
11
54
35
2
0
62
1.08
13330--13387
22
2.5
23
79
20
68
39
0
0
60
0.97
24385--24459
31
2.5
29
85
8
105
50
6
2
40
1.43
25829--25932
31
3.4
31
78
4
102
47
5
3
43
1.45
38409--38509
39
2.8
37
76
15
104
45
1
2
49
1.28
39278--39339
31
2.0
31
96
0
115
22
27
16
33
1.95
40987--41053
31
2.2
31
91
0
107
29
11
32
25
1.92
43235--43259
12
2.1
12
100
0
50
48
0
0
52
1.00
44655--44731
32
2.4
33
80
8
95
38
0
1
59
1.06
44656--44729
31
2.4
30
80
8
87
39
0
1
59
1.06
46411--46458
21
2.3
21
85
0
60
25
39
12
22
1.89
46462--46555
21
4.5
21
92
5
129
18
35
26
20
1.95
47079--47175
33
2.9
34
85
3
133
55
4
3
37
1.35
47077--47182
34
3.2
33
82
8
133
54
4
2
37
1.36
47562--48038
126
3.8
126
97
0
904
32
20
26
21
1.98
48106--48146
8
5.2
8
82
5
57
36
29
0
34
1.58
51136--51173
13
3.0
13
88
3
60
44
0
0
55
0.99
51187--51244
23
2.6
23
94
5
102
44
12
3
39
1.58
51983--52048
20
3.3
19
81
12
78
15
1
7
75
1.09
51998--52033
11
3.4
11
84
7
56
11
0
5
83
0.80
51986--52033
21
2.3
21
89
7
71
12
0
6
81
0.87
55403--55493
28
3.1
28
78
17
94
34
9
17
38
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55391--55509
33
3.8
32
84
11
149
32
10
20
36
1.86
55565--55665
37
2.8
37
82
5
109
40
16
20
21
1.91
55788--56624
106
8.0
105
95
1
1426
22
18
25
33
1.96
55788--56624
210
4.0
210
95
1
1410
22
18
25
33
1.96
55788--56624
316
2.7
315
94
0
1460
22
18
25
33
1.96
59306--59338
9
3.6
9
92
8
57
90
0
0
9
0.44
59306--59339
10
3.5
10
96
4
61
91
0
0
8
0.43

Tables:   1

The End!