genome.fa.s4954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004954.1 Hibiscus syriacus cultivar Beakdansim tig00011140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86023

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023--1055	17	1.9	17	93	0	57	63	0	3	33	1.10
5564--5655	31	3.0	31	90	0	130	43	9	11	34	1.75
9021--9053	2	16.5	2	100	0	66	48	0	0	51	1.00
15405--15450	14	3.2	14	75	6	56	36	0	6	56	1.25
20035--20084	6	8.3	6	100	0	100	34	48	18	0	1.48
20081--20112	5	6.6	5	96	3	57	37	21	40	0	1.54
20709--20761	22	2.4	22	93	0	97	37	28	16	16	1.91
20750--20928	41	4.4	41	89	0	295	34	25	20	20	1.97
20814--21003	103	1.8	103	90	0	308	33	24	20	22	1.97
20917--21003	41	2.1	41	97	0	165	35	24	19	20	1.96
20750--20969	82	2.7	82	78	5	205	34	25	20	20	1.96
20750--20990	62	3.9	62	75	3	261	34	24	19	21	1.97
22040--22094	25	2.2	25	84	9	69	45	1	5	47	1.36
22908--22932	2	12.5	2	100	0	50	52	0	0	48	1.00
23253--23280	3	9.3	3	100	0	56	32	0	0	67	0.91
26518--26621	47	2.2	48	87	5	149	49	2	0	47	1.23
31626--31721	41	2.2	44	82	12	119	50	4	2	43	1.33
32346--32377	16	2.0	16	100	0	64	31	18	0	50	1.48
33345--33411	25	2.7	25	74	19	68	59	0	4	35	1.18
35285--35330	21	2.2	21	84	0	56	39	30	0	30	1.57
37982--38011	14	2.1	14	100	0	60	13	6	16	63	1.50
51710--51749	20	2.0	20	95	0	71	22	7	10	60	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53189--53328	42	3.4	42	74	9	133	27	15	22	33	1.95
53250--53378	41	3.1	41	67	10	93	30	16	22	31	1.96
53196--53492	83	3.6	82	76	9	282	30	13	22	33	1.93
54484--54510	14	1.9	14	100	0	54	40	7	7	44	1.60
60773--60810	12	3.2	12	88	7	51	39	21	39	0	1.53
60783--60861	21	3.8	21	79	3	88	39	18	40	1	1.59
61288--61425	43	3.2	43	85	3	163	29	22	23	23	1.99
61302--61552	43	5.8	43	80	3	211	27	24	20	27	1.99
66253--66410	21	7.8	20	70	7	77	38	24	17	19	1.92
66377--66606	20	11.5	20	80	5	223	36	24	18	20	1.94
67510--67534	12	2.1	12	100	0	50	72	0	28	0	0.86
69818--70086	19	15.4	19	76	18	291	47	17	21	13	1.82
69818--70108	33	8.5	33	76	17	233	47	17	21	13	1.82
69846--70108	52	5.0	52	97	0	499	46	16	22	13	1.82
70133--70177	19	2.4	19	100	0	90	15	20	17	46	1.84
70142--70185	19	2.3	19	92	0	70	18	20	15	45	1.85
70284--70320	14	2.6	14	91	0	65	45	21	0	32	1.52
72299--72355	14	3.7	14	77	20	60	45	22	21	10	1.82
72280--72372	33	2.8	33	95	0	168	47	21	20	10	1.80
72243--72377	19	7.6	19	76	16	128	45	23	19	11	1.82
72373--72464	33	2.8	33	91	3	141	7	16	28	47	1.73
72373--72501	19	7.3	19	73	17	116	8	15	28	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72549--73017	93	5.1	93	99	0	922	46	19	12	21	1.83
74722--74811	14	5.7	14	72	23	72	43	23	24	8	1.82
74714--74828	33	3.5	33	97	0	221	46	20	23	9	1.80
74736--74833	19	5.7	19	71	22	90	43	22	23	10	1.83
74845--74901	14	3.7	14	75	20	60	10	24	22	42	1.85
74842--74906	33	2.0	33	100	0	130	10	24	21	43	1.84
74886--74961	21	3.7	21	80	3	100	13	25	15	46	1.82
74885--74962	41	1.9	41	94	0	138	14	25	15	44	1.84
75041--75111	33	2.2	33	92	0	115	47	18	22	11	1.80
75492--75681	20	9.6	20	80	5	199	19	19	25	35	1.95
75648--75743	21	4.7	20	76	3	75	21	18	22	36	1.95
78629--78704	37	2.1	37	94	0	134	19	22	23	34	1.97
78968--79018	21	2.4	21	80	0	57	31	1	7	58	1.37
85573--85645	31	2.3	31	90	2	110	19	31	12	36	1.88

Tables:   1

The End!