genome.fa.s4955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004955.1 Hibiscus syriacus cultivar Beakdansim tig00011141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100659

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2439--2486	20	2.4	20	75	0	60	31	14	25	29	1.95
2674--2708	13	2.7	13	95	0	61	48	17	0	34	1.47
2664--2714	13	4.0	13	80	12	52	54	15	0	29	1.41
2610--2778	74	2.3	74	89	6	261	50	17	1	30	1.57
2745--2778	14	2.4	14	100	0	68	47	20	0	32	1.51
3717--3754	2	19.5	2	94	5	69	50	0	0	50	1.00
4178--4250	21	3.5	21	74	10	69	23	17	35	23	1.95
4161--4260	42	2.4	42	86	5	141	26	18	34	22	1.96
4560--4675	21	5.5	21	68	8	56	31	33	12	22	1.92
6290--6330	20	2.0	20	90	0	64	12	14	19	53	1.72
6667--6716	21	2.4	21	83	6	66	16	20	42	22	1.89
6881--6967	20	4.3	20	88	0	129	24	18	21	35	1.95
6882--6970	40	2.2	40	89	0	142	24	17	20	37	1.94
6882--6987	40	2.7	40	85	2	106	25	16	22	34	1.95
25527--25568	21	2.0	22	85	4	59	19	11	9	59	1.59
32651--32755	34	3.1	33	80	13	115	23	6	24	44	1.77
41362--41428	34	2.0	34	93	0	116	40	5	13	40	1.69
44588--44661	20	3.7	20	75	10	78	41	18	21	17	1.90
44605--44680	21	3.7	21	80	3	100	40	18	25	15	1.90
44588--44680	41	2.3	41	98	0	177	40	18	23	17	1.90
44607--44741	41	3.3	41	84	4	148	37	21	20	20	1.94
44669--44760	20	4.6	20	80	8	87	32	26	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45282--45348	19	3.5	19	85	2	89	47	25	16	10	1.78
45344--45528	19	10.1	19	75	14	165	12	21	21	44	1.84
45344--45528	33	5.1	38	78	12	165	12	21	21	44	1.84
45471--45528	20	2.9	19	80	7	53	13	22	18	44	1.85
47585--47651	21	3.2	21	66	6	55	23	35	20	19	1.95
47529--47651	42	2.9	42	80	4	115	23	36	17	22	1.94
49040--49075	14	2.6	14	95	0	63	30	0	25	44	1.54
49184--49260	33	2.3	34	86	6	113	16	22	20	40	1.91
49203--49261	19	3.4	19	73	22	74	13	22	18	45	1.84
51552--51576	12	2.1	12	100	0	50	0	28	0	72	0.86
51750--51803	24	2.2	24	90	0	81	38	20	16	24	1.92
54359--54425	19	3.5	19	83	4	89	37	23	23	14	1.93
54414--54471	14	3.9	14	79	16	71	48	24	17	10	1.78
54398--54476	32	2.4	33	91	2	133	46	22	18	11	1.81
54483--54578	19	5.6	17	72	21	78	11	19	22	45	1.82
54505--54562	14	3.9	14	79	16	71	8	17	25	48	1.75
54488--54578	32	2.8	33	94	3	166	10	18	23	47	1.80
54563--54616	20	2.8	19	86	5	72	16	24	24	35	1.95
54551--54616	19	3.4	19	81	4	78	15	22	24	37	1.92
55082--55126	18	2.5	18	85	0	63	11	15	46	26	1.79
56737--56780	22	2.0	22	95	0	79	18	15	45	20	1.85
56968--57061	20	4.7	20	77	7	82	25	17	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57050--57125	21	3.7	21	80	3	100	15	25	18	40	1.90
56989--57123	41	3.3	41	83	4	139	20	20	20	37	1.94
57050--57142	20	4.6	20	77	4	87	17	23	18	40	1.90
57050--57142	41	2.3	41	98	0	177	17	23	18	40	1.90
58085--58110	2	13.0	2	100	0	52	50	0	0	50	1.00
59153--59212	21	3.0	21	73	7	63	48	0	0	51	1.00
59149--59294	38	3.9	36	77	15	122	42	0	1	55	1.13
61847--61885	21	1.9	21	94	5	71	35	7	7	48	1.61
62110--62188	21	3.7	21	79	17	76	22	34	20	22	1.97
63409--63696	49	5.9	49	81	1	258	21	16	27	35	1.94
63755--63873	30	4.1	29	83	11	138	46	7	20	26	1.77
78835--78874	13	3.1	13	85	0	53	35	25	12	27	1.92
78930--78971	22	1.9	22	90	0	66	23	14	16	45	1.84
80437--80473	20	1.9	19	89	10	58	16	21	10	51	1.74
95630--95791	21	7.7	21	77	5	130	24	12	24	38	1.91
95631--95719	40	2.2	42	87	4	128	21	15	24	38	1.92

Tables:   1

The End!