Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004957.1 Hibiscus syriacus cultivar Beakdansim tig00011144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65761

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1572--1622
18
2.8
18
82
8
68
29
17
35
17
1.93
2435--2966
261
2.0
265
95
2
966
32
12
18
36
1.88
9038--9062
2
12.5
2
100
0
50
52
0
0
48
1.00
14764--14828
6
11.3
6
90
9
93
52
0
46
1
1.10
15890--15975
41
2.1
41
91
2
138
33
15
19
31
1.93
16452--16493
18
2.3
18
100
0
84
33
28
16
21
1.95
18373--18434
24
2.6
24
97
0
115
37
12
17
32
1.88
18497--18556
20
3.0
20
95
2
102
31
15
21
31
1.94
20693--20728
2
18.0
2
100
0
72
50
0
0
50
1.00
21246--21319
20
3.6
20
75
10
69
32
14
24
28
1.95
21241--21323
42
2.0
42
88
4
123
36
14
24
25
1.93
27085--27125
20
2.0
21
95
4
75
29
14
24
31
1.95
37939--37974
17
2.1
17
100
0
72
33
11
25
30
1.90
38745--38806
24
2.6
24
89
0
97
12
14
14
58
1.64
44016--44082
31
2.2
30
81
10
73
40
1
2
55
1.24
44809--44858
19
2.5
21
84
9
70
56
2
0
42
1.11
44805--44872
31
2.2
31
84
7
84
55
2
0
41
1.15
45290--45338
22
2.1
24
85
7
66
48
4
0
46
1.20
51321--51411
24
3.8
24
79
5
87
51
18
9
19
1.74
55567--55675
48
2.3
48
80
3
121
48
16
13
21
1.80
55565--55675
24
4.6
24
75
0
96
48
16
13
21
1.80
57682--57718
18
2.0
19
89
5
58
24
27
32
16
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57750--57797
19
2.5
19
93
0
78
16
20
31
31
1.95
57750--57786
10
3.8
10
92
7
67
16
18
32
32
1.93
58449--58576
58
2.2
58
97
0
238
38
17
0
43
1.54
58465--58557
29
3.2
29
67
17
84
38
19
0
41
1.51
61194--61278
35
2.4
35
80
7
102
25
22
15
36
1.93
63636--63721
38
2.3
38
92
8
140
38
11
25
24
1.89
63653--63721
20
3.5
20
74
18
74
40
11
24
23
1.88
63636--63702
18
3.6
18
72
21
66
35
11
25
26
1.91

Tables:   1

The End!