Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004958.1 Hibiscus syriacus cultivar Beakdansim tig00011145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107453

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8775--8831
22
2.6
22
94
0
96
36
15
19
28
1.92
9253--9521
44
6.1
44
93
0
421
43
12
22
21
1.86
19724--20881
579
2.0
579
99
0
2289
29
12
20
37
1.90
35564--35688
39
3.2
39
84
4
153
23
16
28
32
1.95
37187--37238
20
2.6
20
100
0
104
30
19
19
30
1.96
41508--41564
21
2.7
21
86
0
69
40
21
21
17
1.92
42662--42782
38
3.2
38
89
1
179
28
30
21
19
1.97
47925--48430
59
8.6
59
89
0
755
33
18
14
32
1.92
48750--48973
95
2.4
95
86
2
290
28
25
15
31
1.95
53665--53748
37
2.3
37
87
6
118
32
4
17
45
1.70
55431--55492
23
2.7
22
81
16
81
53
0
1
45
1.10
55432--55491
22
2.6
24
82
12
81
53
0
1
45
1.10
55464--55501
18
2.1
18
90
0
58
55
0
0
44
0.99
59605--59690
3
28.7
3
100
0
172
32
0
0
67
0.91
60011--60091
42
1.9
42
89
0
126
32
13
23
30
1.93
60102--60881
202
3.9
202
87
2
1030
27
21
17
33
1.96
60105--60843
405
1.8
404
88
2
1124
28
21
16
33
1.95
60886--61157
117
2.3
116
89
2
402
26
24
13
35
1.93
62937--62991
20
2.8
20
91
0
92
27
21
29
21
1.99
62559--63227
262
2.7
236
79
11
617
34
16
17
31
1.92
63293--63451
59
2.6
59
85
3
192
42
15
9
32
1.79
72633--73437
400
2.0
399
97
0
1529
27
19
16
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73672--73739
28
2.4
28
85
0
91
23
7
30
38
1.82
74481--74550
21
3.3
21
76
11
70
4
17
2
75
1.08
74503--74559
25
2.2
25
82
11
71
7
12
1
78
1.01
80984--81108
60
2.1
60
80
3
135
32
14
8
45
1.74
81622--81942
158
2.0
158
100
0
642
37
9
19
33
1.85
82790--82831
3
14.0
3
84
0
57
64
2
4
28
1.26
82941--82980
21
2.0
21
90
5
64
52
2
0
45
1.14
83037--83084
2
24.0
2
100
0
96
50
0
0
50
1.00
84991--85070
3
28.0
3
80
9
96
40
0
0
60
0.97
84977--85070
25
3.8
25
91
5
138
42
0
0
57
0.98
85238--85276
19
2.1
19
95
0
69
25
51
17
5
1.66
86590--86615
2
13.0
2
100
0
52
50
0
0
50
1.00
89790--89823
2
17.5
2
93
6
61
52
0
0
47
1.00
91682--91762
18
4.5
18
86
6
119
48
18
8
24
1.76
91713--91770
18
3.2
18
76
9
64
48
20
8
22
1.77
102611--102668
24
2.4
24
82
0
71
36
18
20
24
1.95
105526--105764
18
13.3
19
75
11
166
48
17
7
25
1.74
105540--105768
36
6.4
36
78
10
231
49
17
7
25
1.73
105557--105772
107
2.0
108
84
6
289
49
16
7
25
1.73

Tables:   1

The End!