Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004959.1 Hibiscus syriacus cultivar Beakdansim tig00011147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138213

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2920--2954
17
2.1
17
94
0
61
68
0
0
31
0.90
3247--3363
52
2.3
52
79
4
130
46
1
2
49
1.25
3296--3375
42
1.9
42
84
5
108
42
1
3
52
1.27
12676--12700
2
12.5
2
100
0
50
48
0
0
52
1.00
13260--13287
2
14.0
2
100
0
56
50
0
0
50
1.00
24092--24158
20
3.2
20
73
19
73
46
5
4
43
1.48
25986--26058
30
2.5
27
75
18
67
30
10
2
56
1.48
27085--27145
23
2.7
23
89
0
95
55
9
16
18
1.67
30391--30428
20
1.9
20
84
10
51
42
2
13
42
1.57
38574--38637
29
2.2
29
94
0
110
28
18
14
39
1.90
71728--71770
7
6.0
7
94
5
77
83
0
13
2
0.74
72105--72173
31
2.2
32
82
10
81
37
33
8
20
1.83
78014--78301
145
2.0
145
91
1
470
45
6
9
38
1.62
78473--78519
23
2.0
23
95
0
85
40
17
6
36
1.75
90866--90914
22
2.2
22
88
0
71
51
2
0
46
1.12
91026--91094
19
3.6
18
71
21
52
49
1
1
47
1.19
90989--91074
27
3.1
27
71
18
70
47
1
2
48
1.22
91418--91447
14
2.1
14
93
0
51
36
20
6
36
1.79
91861--91938
37
2.1
36
85
4
102
48
1
3
46
1.28
91914--91961
18
2.7
18
80
9
62
54
4
0
41
1.20
92083--92120
20
1.9
20
88
0
58
21
26
10
42
1.85
94815--94854
20
2.0
21
86
13
59
62
10
5
22
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97793--97817
2
12.5
2
100
0
50
52
0
48
0
1.00
100643--100736
27
3.3
27
68
15
73
38
5
5
51
1.48
100625--100735
58
1.9
59
87
3
163
38
4
6
50
1.48
101028--101069
17
2.4
18
92
4
68
57
0
0
42
0.99
105185--105252
29
2.3
28
82
7
73
25
14
7
52
1.67
110456--110512
16
3.6
16
70
0
51
21
7
22
49
1.73
110462--110555
32
2.9
32
76
6
100
19
10
23
46
1.80
111155--111227
22
3.2
22
66
17
58
46
2
13
36
1.58
111154--111228
25
3.1
25
65
18
68
46
2
13
37
1.57
111332--111441
57
2.0
52
88
10
159
32
9
8
50
1.64
112906--112957
25
2.1
25
100
0
104
44
19
0
36
1.51
115684--115756
31
2.4
31
92
0
119
34
6
20
38
1.79
120980--121054
36
2.1
36
80
9
82
45
1
4
49
1.29
126067--126130
19
3.6
18
70
21
62
4
12
29
53
1.59
126241--126296
26
2.1
29
75
25
68
46
23
16
14
1.83
129915--129985
31
2.3
31
79
11
74
40
1
4
53
1.29
129927--129994
31
2.2
31
84
7
84
39
1
2
55
1.24
130710--130803
10
9.2
10
67
19
52
56
3
1
39
1.22
130713--130804
31
3.0
30
80
10
89
55
3
1
40
1.23
130723--130772
19
2.5
21
81
9
61
56
2
2
40
1.22
131557--131600
21
2.1
21
82
0
52
45
2
6
45
1.42

Tables:   1

The End!