Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000496.1 Hibiscus syriacus cultivar Beakdansim tig00000943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71291

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
958--994
17
2.2
16
90
4
56
40
2
0
56
1.13
2748--2804
28
2.0
28
100
0
114
33
14
17
35
1.90
25184--25274
34
2.7
33
85
11
105
6
17
3
72
1.20
25197--25251
27
2.1
25
86
10
74
5
16
3
74
1.15
25203--25245
21
2.0
21
95
0
77
4
16
4
74
1.16
26366--26390
6
4.2
6
100
0
50
32
36
16
16
1.90
32147--32209
30
2.1
30
88
5
92
4
19
3
73
1.15
32154--32220
29
2.3
29
84
5
82
5
19
2
71
1.20
33288--33312
6
4.2
6
100
0
50
32
36
16
16
1.90
34377--34700
161
2.0
167
96
3
606
38
13
15
32
1.86
35135--35250
48
2.5
45
81
6
133
31
19
7
41
1.80
35135--35250
46
2.5
48
83
5
139
31
19
7
41
1.80
35271--35324
21
2.5
22
79
8
58
51
25
5
16
1.66
39109--39190
33
2.4
34
84
13
107
6
17
2
74
1.13
39122--39176
27
2.1
25
86
10
74
5
16
3
74
1.15
39128--39170
21
2.0
21
95
0
77
4
16
4
74
1.16
40239--40263
6
4.2
6
100
0
50
32
36
16
16
1.90
48861--48977
26
4.7
25
73
14
98
45
2
4
47
1.36
48988--49015
3
9.3
3
100
0
56
32
0
0
67
0.91
50928--51101
61
2.9
61
85
5
244
33
13
22
29
1.92
56831--56861
10
3.1
10
90
0
53
32
29
0
38
1.57
57258--57317
31
2.0
30
84
12
79
43
0
21
35
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59680--59862
91
2.0
91
98
0
357
44
4
15
34
1.67
59710--59847
42
3.1
42
63
17
107
45
4
15
34
1.66
60028--60072
22
2.0
23
95
0
67
37
4
11
46
1.60
67977--68035
20
2.8
21
80
12
59
37
16
18
27
1.93

Tables:   1

The End!