Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004961.1 Hibiscus syriacus cultivar Beakdansim tig00011152_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87036

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
852--928
9
8.2
9
73
11
57
9
10
1
79
1.00
852--888
19
1.9
19
89
10
58
0
16
2
81
0.81
885--927
11
3.6
11
87
9
50
16
4
0
79
0.90
884--934
13
3.8
13
82
17
61
15
5
1
76
1.07
12182--12217
3
12.7
3
88
11
58
66
0
0
33
0.92
12182--12217
11
3.2
11
88
4
54
66
0
0
33
0.92
12182--12218
14
2.6
14
95
0
65
64
0
0
35
0.94
13260--13477
103
2.1
105
84
1
287
39
11
11
37
1.78
13304--13502
103
1.9
102
81
1
236
41
10
12
35
1.78
13266--13514
103
2.4
103
79
2
221
41
11
12
34
1.79
13528--13560
16
2.1
16
100
0
66
45
12
6
36
1.66
14637--14726
2
45.0
2
100
0
180
50
0
0
50
1.00
15530--15573
16
2.6
16
85
10
52
15
13
0
70
1.17
16363--16412
13
3.7
13
76
10
55
26
16
12
46
1.81
26796--26825
15
2.0
15
93
0
51
13
0
30
56
1.37
35787--35841
3
18.3
3
79
20
62
65
0
0
34
0.93
35781--35841
15
4.1
15
97
0
104
63
0
0
36
0.94
37691--38888
105
11.4
105
95
0
2081
23
17
25
33
1.96
49029--49067
18
2.1
19
85
4
53
79
0
2
17
0.84
50515--50572
3
19.3
3
83
13
75
63
0
0
36
0.94
50507--50572
15
4.4
16
88
11
104
62
0
0
37
0.96
51897--51929
15
2.2
15
89
10
50
78
0
0
21
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53193--53262
2
35.0
2
100
0
140
50
0
0
50
1.00
55207--55295
41
2.2
41
91
0
142
51
3
4
40
1.39
58551--58633
34
2.4
34
91
4
130
33
10
13
42
1.79
62080--62228
59
2.5
59
81
7
171
32
22
3
40
1.71
65900--65977
27
2.8
28
76
3
86
29
24
16
29
1.97
66227--66274
22
2.2
22
100
0
96
47
12
0
39
1.41
66264--66288
12
2.1
12
100
0
50
60
8
0
32
1.26
74423--74724
153
2.0
148
88
6
446
38
16
11
34
1.84
74573--77490
540
5.4
544
81
8
3011
37
13
13
35
1.83
80020--80687
342
2.0
342
85
5
904
36
12
14
36
1.84
84646--84785
70
2.0
70
97
0
262
32
10
23
32
1.89

Tables:   1

The End!