genome.fa.s4962.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004962.1 Hibiscus syriacus cultivar Beakdansim tig00011153_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72127

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4757--4860	34	3.1	35	84	6	126	44	25	6	24	1.78
11876--11917	21	2.0	22	85	4	59	59	9	11	19	1.59
29608--29639	12	2.7	12	100	0	64	43	0	34	21	1.53
30526--30612	20	4.3	20	88	0	129	35	21	18	24	1.95
30526--30631	40	2.6	39	83	5	115	37	21	16	23	1.93
30789--30830	22	1.9	22	90	0	66	21	42	16	19	1.89
31173--31213	20	2.0	20	90	0	64	53	19	14	12	1.72
33279--33375	21	4.6	21	76	10	99	23	34	16	25	1.95
33275--33388	42	2.7	42	86	5	142	21	37	15	24	1.93
33780--33811	2	16.5	2	93	6	57	50	0	0	50	1.00
34755--34788	14	2.4	14	100	0	68	32	0	20	47	1.51
34830--34864	14	2.5	14	100	0	70	31	0	20	48	1.50
34755--34929	77	2.3	78	93	1	298	30	1	17	50	1.56
34811--34918	37	2.8	37	71	8	101	26	2	14	55	1.53
35278--35313	18	2.0	18	94	0	63	16	2	25	55	1.55
39535--39657	31	4.0	31	91	2	176	35	21	21	21	1.96
40639--40684	21	2.2	21	84	0	56	13	26	30	30	1.93
43556--43589	17	2.0	18	88	11	54	58	17	2	20	1.51
43825--43916	31	3.0	31	83	3	105	39	21	17	21	1.93
45751--45828	36	2.2	36	90	4	122	44	6	19	29	1.75
50427--50499	36	2.0	36	100	0	146	43	8	19	28	1.79
50635--50668	17	1.9	18	88	5	52	41	8	14	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52304--52373	12	5.8	12	78	6	70	14	15	17	52	1.74
52267--52375	48	2.3	48	85	3	139	18	15	16	49	1.80
52267--52375	24	4.5	24	79	2	121	18	15	16	49	1.80
52533--52591	2	29.5	2	100	0	118	49	0	0	50	1.00
53165--53211	24	2.0	24	91	0	76	38	21	19	21	1.94
54168--54270	19	5.2	20	74	10	77	35	11	21	31	1.89
54167--54242	39	1.9	40	86	2	109	36	13	22	27	1.91

Tables:   1

The End!