genome.fa.s4965.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004965.1 Hibiscus syriacus cultivar Beakdansim tig00011157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59727

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623--991	37	9.7	38	74	14	250	43	4	10	42	1.59
881--925	23	2.0	23	90	0	72	44	4	8	42	1.56
1017--1076	16	3.9	15	77	14	61	28	0	0	71	0.86
1029--1066	19	2.0	20	89	5	60	31	0	0	68	0.90
1017--1072	4	13.5	4	75	14	51	30	0	0	69	0.89
6431--6474	22	2.0	22	100	0	88	54	4	18	22	1.61
14162--14447	37	7.7	37	82	9	241	43	4	10	41	1.60
14176--14442	74	3.6	73	82	9	317	42	5	10	41	1.61
14448--14474	2	13.5	2	100	0	54	51	48	0	0	1.00
14474--14576	43	2.5	42	76	12	104	42	2	5	48	1.42
14519--14556	16	2.3	16	90	4	58	44	0	5	50	1.24
14560--14593	15	2.3	15	90	10	52	29	0	2	67	1.05
14512--14590	43	1.9	40	82	7	95	40	0	3	55	1.18
16001--16093	21	4.5	21	78	4	100	39	18	24	17	1.91
16001--16093	41	2.3	41	100	0	186	39	18	24	17	1.91
16020--16154	41	3.3	41	83	4	139	37	21	20	20	1.94
16082--16175	20	4.7	20	77	7	82	32	25	15	25	1.96
16363--16406	22	2.0	22	95	0	79	20	45	15	18	1.85
17916--17960	18	2.5	18	85	0	63	26	46	15	11	1.79
18432--18476	20	2.3	20	88	3	65	35	26	22	15	1.94
18486--18543	14	3.9	14	79	16	71	50	25	15	8	1.73
18487--18553	32	2.1	32	97	0	125	50	23	16	8	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18432--18555	19	7.1	19	70	20	63	45	23	18	12	1.84
18577--18634	14	3.9	14	79	16	71	8	17	25	48	1.75
18572--18650	32	2.4	33	95	2	142	10	18	24	46	1.80
18591--18708	20	6.4	19	77	11	95	13	20	24	41	1.88
20572--20673	19	5.6	19	86	9	142	46	18	21	13	1.84
20692--20749	20	2.9	20	89	0	89	18	22	20	37	1.94
21787--21840	24	2.2	24	90	0	81	24	16	20	38	1.92
24322--24419	19	5.7	19	69	22	90	43	19	24	12	1.85
24322--24415	33	2.8	33	98	0	179	43	19	24	12	1.85
24415--24457	20	2.2	20	87	4	61	16	18	23	41	1.89
24443--24476	14	2.4	14	85	0	50	8	23	20	47	1.78
24599--24635	14	2.6	14	91	0	65	45	24	0	29	1.53
25992--26058	21	3.2	21	68	4	55	19	20	35	23	1.95
25992--26114	42	2.9	41	80	7	113	22	17	36	22	1.95
28118--28270	20	8.4	19	71	17	83	43	23	21	11	1.85
28135--28233	33	3.0	33	89	1	144	39	26	23	11	1.88
28111--28275	19	9.1	19	73	16	127	43	22	21	12	1.85
28271--28338	20	3.5	19	82	6	82	11	16	25	47	1.80
28856--28907	20	2.6	20	96	0	95	23	21	28	26	1.99
28856--28949	20	4.7	20	81	7	91	23	18	25	32	1.97
28938--29030	20	4.5	21	78	4	100	17	24	18	39	1.91
28877--29011	41	3.3	41	83	4	139	19	21	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28938--29030	41	2.3	41	100	0	186	17	24	18	39	1.91
29730--29783	25	2.2	25	83	3	74	55	14	1	27	1.50
31240--31264	13	1.9	13	100	0	50	48	0	4	48	1.20
32273--32383	7	15.9	7	73	10	57	23	0	31	45	1.53
32274--32383	21	5.2	21	76	10	109	23	0	30	45	1.53
32262--32369	42	2.6	42	83	5	137	25	0	29	44	1.54
32312--32369	28	2.1	28	83	6	73	27	0	27	44	1.54
32262--32387	42	3.0	41	76	14	132	24	0	30	45	1.54
32663--32704	17	2.5	17	88	0	57	23	14	28	33	1.94
32686--32759	11	6.5	11	75	9	67	27	24	24	24	2.00
32693--32760	23	2.9	24	88	2	93	27	26	22	23	1.99
36964--37020	21	2.7	21	88	0	87	21	29	26	22	1.99
42754--42872	35	3.3	36	84	5	161	33	5	17	42	1.73
42727--42870	72	2.1	69	85	7	193	34	6	18	40	1.77
47364--47475	35	3.2	35	82	5	136	32	4	18	44	1.70
50718--50779	14	4.7	12	84	15	70	64	1	9	24	1.33
50701--50760	28	2.2	28	77	19	72	66	0	11	21	1.23
50704--50765	26	2.3	27	84	13	76	67	0	9	22	1.19
50718--50779	26	2.3	28	86	10	85	64	1	9	24	1.33
50732--50808	14	5.6	14	79	11	63	62	2	7	27	1.36
50774--50835	24	2.6	25	78	12	67	64	1	4	29	1.23
52284--52317	14	2.4	14	95	0	59	26	17	5	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52159--52565	123	3.0	138	82	10	506	25	18	15	40	1.90
52304--53248	123	7.5	123	86	5	1329	26	19	15	39	1.91
52667--52706	17	2.4	17	95	0	71	32	20	2	45	1.64
52544--52829	140	2.0	140	91	2	459	26	20	13	39	1.89
52416--53195	263	3.0	260	85	7	1135	26	18	15	39	1.91
52164--53248	386	2.9	383	87	4	1490	26	19	15	39	1.91
56109--56190	11	7.6	11	72	18	66	3	17	2	76	1.03
56095--56188	11	8.3	11	70	9	55	3	17	2	77	0.99
57681--57801	61	2.0	61	83	6	156	36	19	16	27	1.93
58166--58200	11	3.0	12	83	8	54	34	5	22	37	1.78
58166--58233	23	2.8	26	83	14	85	38	5	23	32	1.79

Tables:   1

The End!