genome.fa.s4966.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004966.1 Hibiscus syriacus cultivar Beakdansim tig00011158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87575

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160--206	19	2.5	19	89	3	69	29	14	21	34	1.93
4800--5072	105	2.6	104	89	3	422	23	20	17	37	1.94
6013--6043	16	2.0	16	93	6	55	16	19	0	64	1.29
12404--12453	20	2.5	20	83	3	55	28	8	4	60	1.43
12691--12724	2	17.0	2	100	0	68	50	0	0	50	1.00
23032--23079	23	2.1	23	84	0	60	37	6	16	39	1.74
23699--24152	182	2.5	182	88	2	673	27	14	12	44	1.82
24025--24486	111	4.1	112	92	1	723	25	14	14	45	1.82
24025--24486	224	2.1	223	90	2	723	25	14	14	45	1.82
26131--26159	14	2.1	14	100	0	58	37	27	6	27	1.82
27836--27899	32	2.0	32	96	0	119	20	43	9	26	1.82
30743--30794	21	2.5	21	81	3	61	38	19	25	17	1.93
30780--30857	41	1.9	41	83	0	102	39	23	15	21	1.91
30825--30877	20	2.7	20	93	0	88	28	28	18	24	1.98
31065--31130	22	3.0	22	95	0	114	19	39	16	24	1.92
31392--31440	20	2.5	20	89	0	71	18	18	26	36	1.94
32769--32906	18	7.6	18	84	9	190	26	39	16	16	1.90
33323--33368	20	2.3	20	88	0	65	36	26	21	15	1.93
33362--33452	32	2.8	33	86	3	130	49	18	17	14	1.80
33378--33435	14	3.9	14	79	16	62	51	20	15	12	1.75
33392--33457	19	3.8	19	75	22	72	50	19	18	12	1.78
33464--33542	32	2.4	33	91	2	124	13	16	20	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33527--33582	20	2.8	19	86	7	76	16	25	23	35	1.94
35595--35648	14	3.5	14	77	22	63	48	20	20	11	1.80
35576--35653	33	2.4	33	91	0	120	42	21	23	12	1.87
35672--35729	20	2.9	20	97	0	107	15	22	24	37	1.93
35957--36013	19	3.3	18	72	23	59	49	17	19	14	1.80
35957--36025	33	2.1	33	86	0	93	50	18	17	13	1.77
36025--36148	33	3.7	33	83	5	142	14	21	17	45	1.84
36901--36954	24	2.2	24	90	0	81	24	16	20	38	1.92
38633--38663	2	15.5	2	100	0	62	48	0	0	51	1.00
40626--41153	105	5.0	105	94	0	903	23	17	25	33	1.96
40541--41153	315	2.0	305	90	4	951	23	17	24	34	1.96
41990--42026	10	3.5	10	86	13	56	2	0	10	86	0.67
49580--49749	84	2.0	84	96	0	313	17	27	12	43	1.84
51547--51575	10	2.9	10	100	0	58	79	0	0	20	0.74
52998--53030	2	16.5	2	100	0	66	51	0	0	48	1.00
55652--55782	19	7.7	19	65	23	85	42	19	22	15	1.88
55652--55778	33	3.8	33	87	4	193	42	18	22	15	1.89
55653--55785	66	2.0	66	95	0	239	41	18	22	17	1.90
55793--55849	14	3.7	14	75	20	60	8	24	22	43	1.81
55778--55867	33	2.7	33	94	0	153	13	22	21	43	1.87
55807--55867	19	3.5	19	72	21	69	11	22	21	44	1.84
55976--56010	14	2.5	14	90	0	61	45	22	0	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57770--57984	94	2.3	94	93	1	369	46	19	13	20	1.83
59694--59792	33	3.0	33	90	1	153	39	22	26	12	1.89
59669--59814	19	8.1	19	70	17	96	42	19	24	13	1.87
59810--59877	20	3.5	18	71	15	55	8	14	25	51	1.71
60398--60446	20	2.5	20	93	0	80	24	20	30	24	1.98
60455--60508	20	2.7	20	97	0	99	25	18	24	31	1.97
60415--60529	61	1.9	61	80	3	133	21	20	24	33	1.97
60497--60548	20	2.5	21	75	3	52	17	25	21	36	1.94
61809--61873	18	3.4	18	68	12	58	46	15	9	29	1.77
61789--61871	39	2.1	39	91	4	132	49	15	8	26	1.73
61901--61960	13	4.7	13	79	4	68	23	25	0	51	1.48
62353--62388	12	3.0	12	87	0	54	41	25	16	16	1.89
62978--63107	32	4.1	32	91	4	203	36	20	16	26	1.94
66329--66376	20	2.4	21	79	10	55	39	27	0	33	1.57
75016--75041	13	2.0	13	100	0	52	38	0	0	61	0.96
75025--75096	17	4.4	17	69	17	55	43	0	0	56	0.99
75027--75066	19	2.0	20	95	4	73	42	0	0	57	0.98
75016--75110	32	3.1	31	82	11	99	38	0	0	61	0.96
75194--75252	27	2.1	27	81	9	66	27	0	10	62	1.27
76481--76530	24	2.1	24	85	7	66	58	12	2	28	1.45
79785--79860	26	3.0	25	78	18	86	71	0	17	11	1.15
79754--79826	29	2.5	28	75	18	67	71	0	20	8	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79785--79860	24	3.0	26	80	18	97	71	0	17	11	1.15
81905--81949	23	2.0	23	90	0	72	24	26	26	22	2.00
81917--82231	149	2.1	149	96	1	578	33	21	18	27	1.96
83117--83151	18	1.9	18	88	11	54	22	17	5	54	1.64
83731--83775	21	2.1	21	87	0	63	15	24	28	31	1.96
86994--87294	144	2.1	140	91	7	484	33	20	18	26	1.96

Tables:   1

The End!