genome.fa.s4967.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004967.1 Hibiscus syriacus cultivar Beakdansim tig00011159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102959

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863--918	15	3.7	15	79	11	69	16	26	35	21	1.94
5042--5082	20	2.0	20	85	0	55	82	4	2	9	0.89
10614--10646	15	2.3	14	94	5	57	63	0	3	33	1.10
11378--11521	74	2.0	72	82	9	175	60	9	2	27	1.42
16945--17006	20	3.0	20	76	7	61	16	25	33	24	1.95
23210--23245	17	2.1	17	94	0	63	61	13	0	25	1.33
23204--23244	17	2.5	16	84	7	55	58	12	2	26	1.46
23214--23259	17	2.8	17	83	9	51	63	8	2	26	1.35
33268--33398	34	3.8	34	83	1	172	41	10	19	29	1.85
33268--33397	68	1.9	69	88	1	199	40	10	19	29	1.85
38841--38866	13	2.0	13	100	0	52	30	23	7	38	1.83
38890--38922	14	2.4	14	90	10	50	30	24	9	36	1.86
39640--39735	42	2.3	42	90	0	156	27	20	26	26	1.99
43307--43393	35	2.5	34	78	12	88	54	11	8	26	1.64
44430--44468	20	2.0	20	89	0	60	15	25	38	20	1.92
46733--46781	24	2.0	24	88	7	73	34	4	4	57	1.37
46953--46991	20	2.0	20	84	0	51	23	7	23	46	1.78
47190--47227	20	1.9	20	88	0	58	13	26	36	23	1.91
49363--49426	17	3.5	19	78	18	82	3	14	31	51	1.57
59594--59640	22	2.1	22	84	7	60	25	14	10	48	1.76
65497--65523	2	13.5	2	100	0	54	51	0	0	48	1.00
77791--77835	20	2.2	20	100	0	90	26	15	11	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82396--82430	15	2.2	16	90	5	54	42	20	11	25	1.85
84660--84713	12	4.5	12	83	0	72	42	0	44	12	1.43
84671--84759	24	3.7	24	77	3	72	40	3	47	8	1.52
89243--89271	2	15.0	2	92	7	51	48	0	0	51	1.00
93143--93268	62	2.0	62	90	0	198	28	19	14	38	1.90
95771--95966	20	9.6	20	79	7	189	25	24	20	29	1.99
96130--96182	22	2.4	22	80	0	70	24	41	16	16	1.89
96503--96543	20	2.0	20	95	0	73	12	14	17	56	1.68
96507--96550	20	2.2	20	87	0	61	13	13	18	54	1.71
98271--98320	18	2.8	18	100	0	100	32	20	6	42	1.76
98472--98515	20	2.2	20	91	0	70	36	25	20	18	1.95
98580--98625	20	2.3	20	92	0	74	34	26	19	19	1.96
99218--99284	21	3.0	23	71	10	57	23	37	14	23	1.93
100628--100665	13	2.8	14	88	4	51	36	0	15	47	1.46
100799--100828	14	2.1	14	93	0	51	46	23	20	10	1.80
100838--100964	34	3.6	34	76	12	128	22	20	21	35	1.96
100872--101109	20	12.9	20	70	14	136	25	18	21	35	1.95
100830--100991	74	2.2	73	87	3	234	24	21	19	34	1.96
100893--101099	54	3.9	52	79	6	220	23	17	22	36	1.95
100999--101046	18	2.5	19	90	6	71	18	16	29	35	1.93
101084--101298	70	3.1	70	63	22	169	41	14	14	28	1.86
101079--101349	140	1.9	140	97	0	515	42	14	13	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101404--101444	18	2.3	18	86	0	64	17	2	29	51	1.58
101474--101524	19	2.7	19	93	3	77	27	7	27	37	1.84
101482--101524	19	2.3	19	100	0	86	27	9	30	32	1.88

Tables:   1

The End!