Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004968.1 Hibiscus syriacus cultivar Beakdansim tig00011160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80383
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Found at i:551 original size:7 final size:7
Alignment explanation
Indices: 539--575 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
529 GTCAAAGGAA
539 GTCAACG
1 GTCAACG
546 GTCAACG
1 GTCAACG
553 GTC-ACG
1 GTCAACG
559 GTCAACG
1 GTCAACG
566 GTCAACG
1 GTCAACG
573 GTC
1 GTC
576 GGGTCGGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:561 original size:13 final size:14
Alignment explanation
Indices: 539--575 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
529 GTCAAAGGAA
539 GTCAACGGTCAACG
1 GTCAACGGTCAACG
553 GTC-ACGGTCAACG
1 GTCAACGGTCAACG
566 GTCAACGGTC
1 GTCAACGGTC
576 GGGTCGGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (14 bp):
GTCAACGGTCAACG
Found at i:590 original size:14 final size:14
Alignment explanation
Indices: 573--633 Score: 68
Period size: 14 Copynumber: 4.1 Consensus size: 14
563 ACGGTCAACG
573 GTCGGGTCGGGTCA
1 GTCGGGTCGGGTCA
*
587 GTCGGGTTGGGTCA
1 GTCGGGTCGGGTCA
601 GTCGGGTCGGTCGGGTCA
1 GTC--G--GGTCGGGTCA
*
619 GTAGGGTCGGGTCA
1 GTCGGGTCGGGTCA
633 G
1 G
634 ACCGGTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 27 0.68
16 2 0.05
18 11 0.28
ACGTcount: A:0.08, C:0.18, G:0.51, T:0.23
Consensus pattern (14 bp):
GTCGGGTCGGGTCA
Found at i:592 original size:9 final size:9
Alignment explanation
Indices: 578--626 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
568 CAACGGTCGG
578 GTCGGGTCA
1 GTCGGGTCA
587 GTCGGGT--
1 GTCGGGTCA
594 -T-GGGTCA
1 GTCGGGTCA
*
601 GTCGGGTCG
1 GTCGGGTCA
610 GTCGGGTCA
1 GTCGGGTCA
*
619 GTAGGGTC
1 GTCGGGTC
627 GGGTCAGACC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
5 4 0.12
6 1 0.03
8 1 0.03
9 27 0.82
ACGTcount: A:0.08, C:0.18, G:0.49, T:0.24
Consensus pattern (9 bp):
GTCGGGTCA
Found at i:618 original size:32 final size:33
Alignment explanation
Indices: 572--633 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
562 AACGGTCAAC
* *
572 GGTCGGGTCGGGTCAGTCGGGTTGGGTCAGTCG
1 GGTCGGGTCGGGTCAGTAGGGTCGGGTCAGTCG
605 GGTC-GGTCGGGTCAGTAGGGTCGGGTCAG
1 GGTCGGGTCGGGTCAGTAGGGTCGGGTCAG
634 ACCGGTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.08, C:0.18, G:0.52, T:0.23
Consensus pattern (33 bp):
GGTCGGGTCGGGTCAGTAGGGTCGGGTCAGTCG
Found at i:654 original size:19 final size:19
Alignment explanation
Indices: 630--688 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
620 TAGGGTCGGG
630 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
649 TCAGACCGGTCAAACCAGT
1 TCAGACCGGTCAAACCGGT
*
668 T-AGAACCGGTCGAAATCGGT
1 TCAG-ACCGGTC-AAACCGGT
688 T
1 T
689 TCCAGCCCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
18 2 0.06
19 26 0.74
20 7 0.20
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:2769 original size:49 final size:51
Alignment explanation
Indices: 2707--2808 Score: 136
Period size: 54 Copynumber: 2.0 Consensus size: 51
2697 ATTGATGAGG
*
2707 AAATAAGATTTA-TTTT-TTGATTAATTGATTTGTAAAAGTTGATTTGTTT
1 AAATAAGAATTATTTTTCTTGATTAATTGATTTGTAAAAGTTGATTTGTTT
* *
2756 AAATAAGAATTATTTTTTTGCTTGTTTAGTTGATTTGTAAAAGTTGATTTGTT
1 AAATAAGAATTA--TTTTT-CTTGATTAATTGATTTGTAAAAGTTGATTTGTT
2809 GTTTCTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
49 11 0.24
52 4 0.09
54 30 0.67
ACGTcount: A:0.30, C:0.01, G:0.16, T:0.53
Consensus pattern (51 bp):
AAATAAGAATTATTTTTCTTGATTAATTGATTTGTAAAAGTTGATTTGTTT
Found at i:3276 original size:18 final size:18
Alignment explanation
Indices: 3253--3288 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
3243 AAGCCAGTTG
*
3253 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
3271 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
3289 CCTTTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:5343 original size:14 final size:14
Alignment explanation
Indices: 5324--5351 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
5314 TACATGTAAA
5324 ACTTACCTTCTTGT
1 ACTTACCTTCTTGT
5338 ACTTACCTTCTTGT
1 ACTTACCTTCTTGT
5352 GCCACTTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.07, T:0.50
Consensus pattern (14 bp):
ACTTACCTTCTTGT
Found at i:5514 original size:21 final size:21
Alignment explanation
Indices: 5488--5556 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
5478 TGACCTATCA
5488 TCCCGAAGGATGTCATCTGTG
1 TCCCGAAGGATGTCATCTGTG
*
5509 TCCCGAAGGA---C--CTGTCA
1 TCCCGAAGGATGTCATCTGT-G
*
5526 TCCCGAAGGATGTAATCTGTG
1 TCCCGAAGGATGTCATCTGTG
*
5547 TCCCGTAGGA
1 TCCCGAAGGA
5557 CCTATCATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
16 4 0.11
17 10 0.26
18 1 0.03
21 19 0.50
22 4 0.11
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (21 bp):
TCCCGAAGGATGTCATCTGTG
Found at i:5527 original size:38 final size:38
Alignment explanation
Indices: 5471--5564 Score: 152
Period size: 38 Copynumber: 2.5 Consensus size: 38
5461 CGTATAAATA
* *
5471 TCCCGAATGACCTATCATCCCGAAGGATGTCATCTGTG
1 TCCCGAAGGACCTATCATCCCGAAGGATGTAATCTGTG
*
5509 TCCCGAAGGACCTGTCATCCCGAAGGATGTAATCTGTG
1 TCCCGAAGGACCTATCATCCCGAAGGATGTAATCTGTG
*
5547 TCCCGTAGGACCTATCAT
1 TCCCGAAGGACCTATCAT
5565 ATGTCTTATA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (38 bp):
TCCCGAAGGACCTATCATCCCGAAGGATGTAATCTGTG
Found at i:6432 original size:19 final size:19
Alignment explanation
Indices: 6408--6472 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
6398 TTTTTCATTT
6408 AGGGGGAATCGATACCCCC
1 AGGGGGAATCGATACCCCC
*
6427 AGGGGGAATCTG-T--TCCC
1 AGGGGGAATC-GATACCCCC
6444 --GGGGAATCGATACCCCCC
1 AGGGGGAATCGATA-CCCCC
6462 ATGGGGGAATC
1 A-GGGGGAATC
6473 TGTTCCCCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
14 1 0.03
15 9 0.25
17 3 0.08
18 3 0.08
19 11 0.31
20 1 0.03
21 8 0.22
ACGTcount: A:0.23, C:0.28, G:0.34, T:0.15
Consensus pattern (19 bp):
AGGGGGAATCGATACCCCC
Found at i:6453 original size:34 final size:36
Alignment explanation
Indices: 6410--6479 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
6400 TTTCATTTAG
6410 GGGGAATCGATA-CCCCCA-GGGGGAATCTGTTCCC
1 GGGGAATCGATACCCCCCATGGGGGAATCTGTTCCC
6444 GGGGAATCGATACCCCCCATGGGGGAATCTGTTCCC
1 GGGGAATCGATACCCCCCATGGGGGAATCTGTTCCC
6480 CCTACACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 12 0.35
35 6 0.18
36 16 0.47
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (36 bp):
GGGGAATCGATACCCCCCATGGGGGAATCTGTTCCC
Found at i:7996 original size:24 final size:24
Alignment explanation
Indices: 7958--8011 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7948 TCATCACATC
* *
7958 ATCAAAATCCGAGTATTCCCCAAG
1 ATCAAAATCCAAGTATTCACCAAG
* *
7982 ATCAAAGTCCAAGTATTGACCAAG
1 ATCAAAATCCAAGTATTCACCAAG
8006 ATCAAA
1 ATCAAA
8012 TTTCGAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.43, C:0.24, G:0.13, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCAAGTATTCACCAAG
Found at i:8158 original size:12 final size:12
Alignment explanation
Indices: 8137--8170 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8127 GGTTGTGGGT
*
8137 TTTGAGATTGTG
1 TTTGATATTGTG
8149 TTTGATATTGTG
1 TTTGATATTGTG
*
8161 TTTGGTATTG
1 TTTGATATTG
8171 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:8943 original size:19 final size:19
Alignment explanation
Indices: 8916--9004 Score: 169
Period size: 19 Copynumber: 4.7 Consensus size: 19
8906 ACTAAAACCT
*
8916 GTTGAGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
8935 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
8954 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
8973 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
8992 GTTGCGAATTTGA
1 GTTGCGAATTTGA
9005 CTATCGCGTT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.37
Consensus pattern (19 bp):
GTTGCGAATTTGAAATTCA
Found at i:9017 original size:20 final size:20
Alignment explanation
Indices: 8992--9046 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
8982 TTGAAATTCA
8992 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
*
9012 GTTGCGAATTTGACTATTGC
1 GTTGCGAATTTGACTATCGC
*
9032 GTTACGAATTTGACT
1 GTTGCGAATTTGACT
9047 TATGTGTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (20 bp):
GTTGCGAATTTGACTATCGC
Found at i:9103 original size:21 final size:20
Alignment explanation
Indices: 9079--9123 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
9069 CGCGTTGCGA
9079 ATTTGGAAAATCGCAACGCGG
1 ATTTGGAAAATCGCAACGC-G
* *
9100 ATTTGTAAAATCGCAATGCG
1 ATTTGGAAAATCGCAACGCG
9120 ATTT
1 ATTT
9124 ACATATTCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (20 bp):
ATTTGGAAAATCGCAACGCG
Found at i:13697 original size:23 final size:23
Alignment explanation
Indices: 13643--13730 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
13633 CAATCTTATA
* *
13643 TGGCACTACAGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
*
13666 TGGCACTTCGGTGCATTTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* **
13689 ATGTC-CTTCGGAACAAATTCTACG
1 -TGGCACTTCGGTGC-AATTCTACG
13713 TGGCACTTCGGTGCAATT
1 TGGCACTTCGGTGCAATT
13731 TATATGAGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
23 34 0.65
24 18 0.35
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:15397 original size:22 final size:22
Alignment explanation
Indices: 15371--15413 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15361 TTCTGGGCTA
* *
15371 GGGGAATCGGTACCCATTCAAG
1 GGGGAACCGATACCCATTCAAG
*
15393 GGGGAACCGATACCCCTTCAA
1 GGGGAACCGATACCCATTCAA
15414 ATGAACAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.16
Consensus pattern (22 bp):
GGGGAACCGATACCCATTCAAG
Found at i:15487 original size:21 final size:22
Alignment explanation
Indices: 15441--15489 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
15431 GACTGTCATG
*
15441 AGGGAACCGATACCCCCATAGT
1 AGGGAACCGATACCCCCATAGA
* *
15463 AGGGAACCGATTCCCCCCTA-A
1 AGGGAACCGATACCCCCATAGA
15484 AGGGAA
1 AGGGAA
15490 ATTATAATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.33, C:0.31, G:0.24, T:0.12
Consensus pattern (22 bp):
AGGGAACCGATACCCCCATAGA
Found at i:20517 original size:14 final size:14
Alignment explanation
Indices: 20498--20529 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
20488 TATTGTAGCA
20498 GGTACTGTTCCTAC
1 GGTACTGTTCCTAC
*
20512 GGTACTGTTCCTAT
1 GGTACTGTTCCTAC
20526 GGTA
1 GGTA
20530 TTTTACTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.38
Consensus pattern (14 bp):
GGTACTGTTCCTAC
Found at i:24738 original size:31 final size:31
Alignment explanation
Indices: 24700--24853 Score: 229
Period size: 31 Copynumber: 5.0 Consensus size: 31
24690 CCCGAAGGAC
* * *
24700 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
24731 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
24762 CAGTCCGTATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
24793 CAGTCCGTATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
24824 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
24854 CCCTCGACCC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 112 0.99
32 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:29102 original size:31 final size:31
Alignment explanation
Indices: 29064--29217 Score: 229
Period size: 31 Copynumber: 5.0 Consensus size: 31
29054 CCCGAAGGAC
* * *
29064 CAGTCCATA-GATTCCGAAGAACCTAGGTAAT
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
29095 CAGTCCATATGTCCCGAAGGACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
29126 CAGTCCGTATGTTCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
29157 CAGTCCGTATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
29188 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
29218 CCCTCGACCC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 112 0.99
32 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:31620 original size:8 final size:8
Alignment explanation
Indices: 31609--31642 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
31599 ATATTTTATA
31609 TATTTAAT
1 TATTTAAT
31617 TATTTAAT
1 TATTTAAT
*
31625 TATTTAAC
1 TATTTAAT
31633 TATTTAAT
1 TATTTAAT
31641 TA
1 TA
31643 CTTATCCGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (8 bp):
TATTTAAT
Found at i:31659 original size:2 final size:2
Alignment explanation
Indices: 31652--31681 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
31642 ACTTATCCGC
31652 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
31682 TAATAACTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32060 original size:55 final size:55
Alignment explanation
Indices: 32001--32963 Score: 1580
Period size: 55 Copynumber: 17.6 Consensus size: 55
31991 TTCTCTAGTC
* *
32001 CTTCAGAGAGTATAAGACTCGAACAATCTTTAACAATCGCATCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
*
32056 CTTCAGAGAGTATAAGACTCGAACAATCTTC-ACTGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAAC-AATCGCGTCTGCCCCCTATTT
* * *
32111 CTTCAGAGAGTATAAGACTCGAACAATCTTCATCGATCGCGTCTACCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
*
32166 CTTCAGAGAGTATAAGACTCGAACAATCTTC-ACTGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAAC-AATCGCGTCTGCCCCCTATTT
* *
32221 CTTCAGAGAGTATAAGACCCGAACAATCTTCAACAATCGTGTCTGCCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTG-CCCCCTATTT
32277 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
*
32332 CTTCAGAGAGTATAAGACTCGAACAATCTTC-ACTTATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAAC-AATCGCGTCTGCCCCCTATTT
* * *
32387 CTTCAGAGAGTATAAGACTCGAACAATCTTCATCGATCGCGTCTACCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
32442 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
*
32497 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* * *
32552 CTTTAGAGAGTATAAGACTCGAATAATCTTCAACGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* *
32607 CTTCAGAGAGTATAAGAC-C-CACAATCTTCATCAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
32660 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* *
32715 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCACCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* **
32770 CTTCAGAGAATATAAGACTCGAACAATCTTCAATGATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* *
32825 CTTCAGAGAGTGTAAGACTC--ACAATCTTCATCAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
* *
32878 CTTCAGAGAGTATAAGACTCGAACAATTTTCATCAATCGCGTCTGCCCCCTATTT
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
*
32933 CTTCAGAGAGTATAATACTCGAACAATCTTC
1 CTTCAGAGAGTATAAGACTCGAACAATCTTC
32964 TACGATCGTT
Statistics
Matches: 854, Mismatches: 43, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
53 97 0.11
54 7 0.01
55 693 0.81
56 57 0.07
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (55 bp):
CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTT
Found at i:32750 original size:218 final size:220
Alignment explanation
Indices: 32001--32971 Score: 1659
Period size: 218 Copynumber: 4.4 Consensus size: 220
31991 TTCTCTAGTC
* *
32001 CTTCAGAGAGTATAAGACTCGAACAATCTTTAACAATCGCATCTGCCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
32066 TATAAGACTCGAACAATCTTC-ACTGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACT
66 TATAAGACTCGAACAATCTTCAAC-GATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACT
* *
32130 CGAACAATCTTCATCGATCGCGTCTACCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCT
130 CGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCT
*
32195 TCA-CTGATCGCGTCTGCCCCCTATTT
195 TCATC-AATCGCGTCTGCCCCCTATTT
* *
32221 CTTCAGAGAGTATAAGACCCGAACAATCTTCAACAATCGTGTCTGCCCCCCTATTTCTTCAGAGA
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTG-CCCCCTATTTCTTCAGAGA
*
32286 GTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACT
65 GTATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACT
*
32351 CGAACAATCTTC-ACTTATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATC
130 CGAACAATCTTCAAC-GATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATC
* *
32415 TTCATCGATCGCGTCTACCCCCTATTT
194 TTCATCAATCGCGTCTGCCCCCTATTT
32442 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
*
32507 TATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTTAGAGAGTATAAGACTC
66 TATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTC
* *
32572 GAATAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGAC-C-CACAATCTT
131 GAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTT
32635 CATCAATCGCGTCTGCCCCCTATTT
196 CATCAATCGCGTCTGCCCCCTATTT
32660 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
* *
32725 TATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCACCTATTTCTTCAGAGAATATAAGACTC
66 TATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTC
* *
32790 GAACAATCTTCAATGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTGTAAGACTC--ACAATCTT
131 GAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTT
32853 CATCAATCGCGTCTGCCCCCTATTT
196 CATCAATCGCGTCTGCCCCCTATTT
* *
32878 CTTCAGAGAGTATAAGACTCGAACAATTTTCATCAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
1 CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
* *
32943 TATAATACTCGAACAATCTTCTACGATCG
66 TATAAGACTCGAACAATCTTCAACGATCG
32972 TTGGGAAACC
Statistics
Matches: 717, Mismatches: 28, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
218 331 0.46
219 2 0.00
220 173 0.24
221 208 0.29
222 3 0.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (220 bp):
CTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGCGTCTGCCCCCTATTTCTTCAGAGAG
TATAAGACTCGAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTC
GAACAATCTTCAACGATCGCGTCTGCCCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATCTT
CATCAATCGCGTCTGCCCCCTATTT
Found at i:33981 original size:8 final size:8
Alignment explanation
Indices: 33968--34018 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
33958 TCTTGAACCC
33968 TCATTTTT
1 TCATTTTT
33976 TCATTTTTTT
1 TCA--TTTTT
*
33986 TTATTTTT
1 TCATTTTT
33994 T-ATTTTT
1 TCATTTTT
*
34001 ACATTTTT
1 TCATTTTT
34009 T-ATTTTT
1 TCATTTTT
34016 TCA
1 TCA
34019 CTCATTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
7 13 0.36
8 16 0.44
10 7 0.19
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (8 bp):
TCATTTTT
Found at i:33992 original size:7 final size:7
Alignment explanation
Indices: 33982--34016 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
33972 TTTTTCATTT
33982 TTTTTTA
1 TTTTTTA
33989 TTTTTTA
1 TTTTTTA
*
33996 TTTTTACA
1 TTTTT-TA
34004 TTTTTTA
1 TTTTTTA
34011 TTTTTT
1 TTTTTT
34017 CACTCATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:47376 original size:2 final size:2
Alignment explanation
Indices: 47371--47446 Score: 145
Period size: 2 Copynumber: 38.5 Consensus size: 2
47361 ACACACACAC
47371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47413 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
47447 ACTACATAAT
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 72 0.99
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48078 original size:131 final size:130
Alignment explanation
Indices: 47837--48203 Score: 477
Period size: 131 Copynumber: 2.8 Consensus size: 130
47827 TCGATATTGA
* *
47837 AAATAGTA-ATATCTTTACATTTCGATTGGAGAAATAAATGATTGCTTTAAGGCATGAGAGATCA
1 AAATAGTATATATC-TT-CATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCA
* * * *
47901 TTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATATCGATTTTTAAGA
64 TTTATTCTCGATTGAAAATAATTAGATATTATTGTTTTCTCCCGAATCAATATCGAATTTTAAGA
*
47966 TG
129 CG
* * *
47968 GAATAGTTATATATCTTCATTTCGATTGGAGTAATAAATGACTACTTTAAGGCATGAGAGGTCAT
1 AAATAG-TATATATCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCAT
* * *
48033 TTATTCTCGACTGAAAATCATTAGATATTATTGTTTT-TACCCGAATCAATATTGAATTTTAAGA
65 TTATTCTCGATTGAAAATAATTAGATATTATTGTTTTCT-CCCGAATCAATATCGAATTTTAAGA
48097 CG
129 CG
* * * * * * *
48099 AAATAGGGATATCTCTTCATTTCGATTGGAGTCATAAATGGTTGCTTTAATGCATGAGATGTTAT
1 AAATA-GTATATATCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCAT
* *
48164 TTATTCTCGATTAAAAATGATTAGATATTATTGTTTTCTC
65 TTATTCTCGATTGAAAATAATTAGATATTATTGTTTTCTC
48204 TCTTAGAATT
Statistics
Matches: 205, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
130 1 0.00
131 193 0.94
132 6 0.03
133 5 0.02
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (130 bp):
AAATAGTATATATCTTCATTTCGATTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCATT
TATTCTCGATTGAAAATAATTAGATATTATTGTTTTCTCCCGAATCAATATCGAATTTTAAGACG
Found at i:51739 original size:13 final size:13
Alignment explanation
Indices: 51721--51747 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51711 TTACAGACGC
51721 GCATATGAAGACT
1 GCATATGAAGACT
51734 GCATATGAAGACT
1 GCATATGAAGACT
51747 G
1 G
51748 TTCAACTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (13 bp):
GCATATGAAGACT
Found at i:51763 original size:4 final size:4
Alignment explanation
Indices: 51754--51784 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
51744 ACTGTTCAAC
51754 TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TAT
51785 ACAGGCATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:51813 original size:6 final size:6
Alignment explanation
Indices: 51798--51846 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
51788 GGCATTGTAT
* *
51798 TTTATC TTTATA TTTATC TTTA-- -TTATC TTTATC TTTATC TTTATT
1 TTTATC TTTATC TTTATC TTTATC TTTATC TTTATC TTTATC TTTATC
51843 TTTA
1 TTTA
51847 ATTTCCTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
3 3 0.08
6 34 0.92
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTATC
Found at i:51825 original size:21 final size:21
Alignment explanation
Indices: 51799--51842 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
51789 GCATTGTATT
51799 TTATCTTTATATTTATCTTTA
1 TTATCTTTATATTTATCTTTA
*
51820 TTATCTTTATCTTTATCTTTA
1 TTATCTTTATATTTATCTTTA
51841 TT
1 TT
51843 TTTAATTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.68
Consensus pattern (21 bp):
TTATCTTTATATTTATCTTTA
Found at i:51828 original size:15 final size:13
Alignment explanation
Indices: 51798--51835 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
51788 GGCATTGTAT
51798 TTTATCTTTA-TA
1 TTTATCTTTATTA
51810 TTTATCTTTATTA
1 TTTATCTTTATTA
51823 TCTTTATCTTTAT
1 --TTTATCTTTAT
51836 CTTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
15 11 0.48
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTATCTTTATTA
Found at i:52957 original size:14 final size:15
Alignment explanation
Indices: 52932--52960 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
52922 TTCAGGTAAA
52932 TTATGTCCTCTGTCT
1 TTATGTCCTCTGTCT
52947 TTATG-CCTCTGTCT
1 TTATGTCCTCTGTCT
52961 GTCAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.28, G:0.14, T:0.52
Consensus pattern (15 bp):
TTATGTCCTCTGTCT
Found at i:54881 original size:23 final size:23
Alignment explanation
Indices: 54844--54907 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
54834 CAGCTCGTAT
54844 AAATGCACCGAAGTGCCACATAG
1 AAATGCACCGAAGTGCCACATAG
* * * *
54867 AATTGCACCGTAGTGCCGCGTAG
1 AAATGCACCGAAGTGCCACATAG
54890 AAATGCACCGAAGTGCCA
1 AAATGCACCGAAGTGCCA
54908 TATAATATGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.16
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCACATAG
Found at i:57494 original size:16 final size:16
Alignment explanation
Indices: 57473--57509 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
57463 TTCAAAATCT
*
57473 AAATCTTCTTTTACAC
1 AAATCTCCTTTTACAC
57489 AAATCTCCTTTTACAC
1 AAATCTCCTTTTACAC
57505 AAATC
1 AAATC
57510 ATATCTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.27, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATCTCCTTTTACAC
Found at i:59817 original size:23 final size:23
Alignment explanation
Indices: 59783--59851 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
59773 CACCACAGCT
*
59783 CGTATAAATGCACTGAAGTGCCA
1 CGTAGAAATGCACTGAAGTGCCA
* * *
59806 CGTAGAATTGCACTGTAGTGCCG
1 CGTAGAAATGCACTGAAGTGCCA
*
59829 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACTGAAGTGCCA
59852 TATAATATGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACTGAAGTGCCA
Found at i:60957 original size:16 final size:17
Alignment explanation
Indices: 60938--60974 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
60928 CTTACATCAT
60938 ATATCAA-ATACAAAAC
1 ATATCAACATACAAAAC
*
60954 ATATCAACATACAACAC
1 ATATCAACATACAAAAC
60971 ATAT
1 ATAT
60975 ACTCATATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (17 bp):
ATATCAACATACAAAAC
Found at i:67941 original size:18 final size:19
Alignment explanation
Indices: 67918--67953 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
67908 TTCTCTAGCA
*
67918 AGAATAGA-AACGAAAAAT
1 AGAATAGACAAAGAAAAAT
67936 AGAATAGACAAAGAAAAA
1 AGAATAGACAAAGAAAAA
67954 GAAATGGGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.69, C:0.06, G:0.17, T:0.08
Consensus pattern (19 bp):
AGAATAGACAAAGAAAAAT
Found at i:69548 original size:16 final size:16
Alignment explanation
Indices: 69527--69565 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
69517 AAAGCCAAAG
69527 CAGGCCCCAATCAATC
1 CAGGCCCCAATCAATC
*
69543 CAGGCCCCAATCAGTC
1 CAGGCCCCAATCAATC
*
69559 AAGGCCC
1 CAGGCCC
69566 GAACTAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.28, C:0.44, G:0.18, T:0.10
Consensus pattern (16 bp):
CAGGCCCCAATCAATC
Found at i:71087 original size:24 final size:23
Alignment explanation
Indices: 71057--71108 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
71047 CGGCGGGTAA
* * *
71057 TTTTTTTAGAAACTTACCCAGTTT
1 TTTTTTTAAAAAATTACCC-GATT
71081 TTTTTTTAAAAAATTACCCGATT
1 TTTTTTTAAAAAATTACCCGATT
71104 TTTTT
1 TTTTT
71109 AGGTCCGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.27, C:0.13, G:0.06, T:0.54
Consensus pattern (23 bp):
TTTTTTTAAAAAATTACCCGATT
Done.