Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000497.1 Hibiscus syriacus cultivar Beakdansim tig00000947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67348

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3871--3910
21
1.9
21
85
10
55
35
10
2
52
1.48
19112--19393
135
2.1
135
87
1
395
35
16
17
30
1.93
21025--21084
10
5.9
10
76
20
54
16
0
5
78
0.92
24299--24379
29
2.8
29
84
0
108
17
25
38
18
1.92
24374--24425
25
2.1
25
92
0
86
9
17
42
30
1.81
24409--24481
38
1.9
38
100
0
146
10
13
36
38
1.80
24638--24717
23
3.5
23
87
0
124
23
18
15
42
1.88
24896--24933
9
4.2
9
83
10
51
31
0
2
65
1.06
24926--25015
31
2.5
35
76
22
98
37
2
15
44
1.59
24950--25015
31
2.1
31
97
0
123
40
3
15
40
1.62
25014--25074
21
2.9
21
97
0
113
27
1
14
55
1.49
25130--25182
28
1.9
27
88
3
79
32
1
16
49
1.57
25129--25193
27
2.3
29
82
10
82
36
1
15
46
1.55
25230--25260
8
3.9
8
95
0
53
35
0
12
51
1.40
25178--25309
54
2.4
56
79
14
150
37
0
12
50
1.40
25407--25446
21
1.9
21
94
0
71
30
0
15
55
1.41
25624--25718
30
3.2
30
82
8
88
37
1
14
46
1.52
25662--25742
22
3.3
22
70
23
72
41
0
16
41
1.47
28232--28610
26
14.7
26
73
15
204
44
8
1
44
1.46
28295--28404
3
37.7
3
75
5
73
40
4
2
52
1.36
28406--28556
35
4.5
35
68
21
99
48
9
1
40
1.45
28514--28547
16
2.1
16
94
0
59
52
8
0
38
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28245--29042
49
15.7
49
71
20
232
45
10
0
42
1.45
28245--28565
98
3.2
98
88
4
414
44
8
1
45
1.43
28442--28763
98
3.3
97
79
11
311
45
10
0
42
1.45
28794--28835
16
2.6
16
100
0
84
50
19
0
30
1.48
28836--28869
14
2.5
14
90
4
52
44
20
0
35
1.52
28582--29111
259
2.0
259
99
0
1051
46
13
0
40
1.46
29053--29094
16
2.6
16
100
0
84
50
19
0
30
1.48
31924--31954
14
2.3
13
94
5
53
67
0
6
25
1.14
32084--32126
22
2.0
22
86
9
61
48
6
0
44
1.29
32088--32148
18
3.4
17
71
22
52
45
9
0
44
1.37
32107--32280
84
2.1
83
90
2
276
48
9
4
37
1.55
32305--32331
14
1.9
14
100
0
54
74
14
3
7
1.18
32724--32777
28
1.9
28
96
0
99
57
12
0
29
1.36
32720--32784
28
2.3
28
84
10
96
55
10
0
33
1.35
32754--32818
21
3.1
21
95
0
112
53
15
0
30
1.42
33321--33380
21
2.9
21
63
9
50
33
18
38
10
1.84
33382--33455
29
2.6
29
86
0
112
21
29
32
16
1.95
33927--34036
56
2.0
55
94
1
193
41
13
19
25
1.88
35896--35976
34
2.4
33
87
4
108
32
13
4
49
1.63
43315--43425
51
2.2
49
82
7
134
16
29
27
26
1.97
45696--45730
15
2.3
15
90
0
52
40
20
31
8
1.82
45851--45922
26
3.0
24
68
27
62
26
6
4
62
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45950--46034
35
2.5
33
76
14
82
25
7
10
56
1.58
49739--49800
29
2.1
29
82
14
74
29
14
27
29
1.95
50320--50501
80
2.3
80
98
0
346
9
34
9
46
1.69
65098--65204
50
2.1
50
78
10
112
20
15
21
42
1.89

Tables:   1

The End!