genome.fa.s4970.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004970.1 Hibiscus syriacus cultivar Beakdansim tig00011163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113335

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10258--10288	2	15.5	2	100	0	62	51	0	0	48	1.00
15144--15419	136	2.0	136	99	0	543	44	10	7	36	1.68
15603--15631	15	1.9	15	100	0	58	79	0	0	20	0.74
16357--16393	19	1.9	19	88	0	56	32	8	2	56	1.43
16469--16585	23	5.2	22	73	11	87	29	23	18	28	1.98
16497--16585	46	1.9	46	82	8	110	28	22	20	29	1.98
18777--18828	21	2.5	21	93	0	95	38	7	17	36	1.78
18886--18953	18	3.6	18	77	11	73	19	17	33	29	1.95
19260--19305	2	23.0	2	100	0	92	50	0	0	50	1.00
24300--24339	21	1.9	21	90	10	64	55	0	17	27	1.43
25965--26030	6	11.0	6	91	0	96	50	0	39	10	1.37
26554--26582	14	2.1	14	100	0	58	34	6	0	58	1.25
32981--33045	24	2.5	26	82	14	89	60	3	29	7	1.40
32992--33045	24	2.2	24	96	0	99	61	3	27	7	1.40
42776--42821	23	2.0	22	87	8	65	26	21	28	23	1.99
43537--43573	16	2.3	16	100	0	74	24	43	8	24	1.81
52107--52165	21	2.8	21	86	0	82	27	18	15	38	1.91
56216--56298	37	2.2	37	91	4	132	31	13	10	44	1.78
58042--58084	10	4.2	10	79	5	50	74	2	4	18	1.10
58105--58131	14	1.9	14	100	0	54	74	3	7	14	1.18
58151--58195	19	2.3	20	88	7	67	62	2	8	26	1.37
58154--58196	20	2.2	19	87	4	59	62	2	9	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59305--59359	26	2.1	26	100	0	110	18	18	27	36	1.94
59370--59448	12	6.7	12	72	16	58	78	2	1	17	0.93
59381--59443	19	3.4	19	93	4	103	79	3	0	17	0.86
59464--59789	35	9.3	35	74	13	210	43	7	4	44	1.53
59465--59789	36	9.3	33	74	15	164	43	7	4	44	1.53
59472--59785	71	4.5	67	74	14	233	42	7	4	44	1.53
62216--62552	38	9.6	36	72	16	142	42	4	7	45	1.52
62283--62372	27	3.4	27	82	3	119	40	4	7	47	1.52
62295--62373	26	3.0	26	83	3	113	43	3	5	48	1.43
62219--62449	127	1.8	126	84	6	313	41	3	7	46	1.50
62336--62552	113	1.9	112	84	7	287	41	5	7	45	1.55
62561--62609	19	2.6	19	76	0	53	28	2	0	69	1.00
63948--63990	22	2.0	22	86	9	61	18	4	2	74	1.10
71400--71495	37	2.6	37	91	3	149	30	12	11	45	1.77
76127--76163	15	2.4	16	82	17	51	32	0	8	59	1.27
76521--76560	16	2.6	16	96	4	73	42	12	5	40	1.64
77482--77605	35	3.5	35	87	0	176	36	17	23	22	1.95
78240--78357	39	3.1	39	79	15	133	36	14	0	49	1.44
78537--78588	23	2.3	23	96	0	95	34	28	19	17	1.94
91959--92058	33	3.1	33	84	2	132	28	13	22	37	1.91
101624--101930	43	7.1	42	82	5	346	26	23	18	31	1.97
101624--101930	86	3.6	86	85	4	395	26	23	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106264--106309	19	2.4	19	100	0	92	36	10	34	17	1.85
111999--112095	20	4.8	20	75	8	79	37	22	18	21	1.95
111939--112110	61	2.9	59	73	10	161	39	25	16	19	1.91
112062--112291	20	11.5	20	80	5	214	37	24	17	19	1.93
112973--113019	24	2.0	24	87	8	69	25	14	21	38	1.92
113187--113211	12	2.1	12	100	0	50	72	0	28	0	0.86

Tables:   1

The End!