Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004971.1 Hibiscus syriacus cultivar Beakdansim tig00011165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87175
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:5705 original size:19 final size:19
Alignment explanation
Indices: 5657--5703 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
5647 TTTACACCAC
5657 AAAAAACAAATCTAACATA
1 AAAAAACAAATCTAACATA
*
5676 AAAAAAGAAATC-AA-ATTA
1 AAAAAACAAATCTAACA-TA
5694 AAAAAACAAA
1 AAAAAACAAA
5704 ATAAAGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 13 0.52
19 11 0.44
ACGTcount: A:0.74, C:0.11, G:0.02, T:0.13
Consensus pattern (19 bp):
AAAAAACAAATCTAACATA
Found at i:8194 original size:53 final size:53
Alignment explanation
Indices: 8128--8241 Score: 149
Period size: 53 Copynumber: 2.2 Consensus size: 53
8118 CAAAAAAACT
* * *
8128 ATCTCAAGAGAGATACATTTGGTGTTTCAAG-GAAATCAATTTCAAGGGAAATA
1 ATCTCAAGAGAGATAAATTAGGTGTTTCAAGAGAAA-CAATCTCAAGGGAAATA
* * * *
8181 ATCTTAAGGGAGATAAATTAGGTGTTTCAAGAGAAACAATCTCAAGGGAGATT
1 ATCTCAAGAGAGATAAATTAGGTGTTTCAAGAGAAACAATCTCAAGGGAAATA
8234 ATCTCAAG
1 ATCTCAAG
8242 GAAGGCAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 48 0.92
54 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.27
Consensus pattern (53 bp):
ATCTCAAGAGAGATAAATTAGGTGTTTCAAGAGAAACAATCTCAAGGGAAATA
Found at i:8264 original size:52 final size:53
Alignment explanation
Indices: 8148--8270 Score: 142
Period size: 53 Copynumber: 2.3 Consensus size: 53
8138 AGATACATTT
* * * * *
8148 GGTGTTTCAAG-GAAATCAATTTCAAGGGAAATAATCTTAAGGGAGATAAATTA
1 GGTGTTTCAAGAGAAA-CAATCTCAAGGGAAATAATCTCAAGGAAGACAAACTA
* * *
8201 GGTGTTTCAAGAGAAACAATCTCAAGGGAGATTATCTCAAGGAAGGCAAACTA
1 GGTGTTTCAAGAGAAACAATCTCAAGGGAAATAATCTCAAGGAAGACAAACTA
*
8254 -GTGTTTCAAGAAAAACA
1 GGTGTTTCAAGAGAAACA
8271 GTTGTTTCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
52 16 0.27
53 40 0.67
54 4 0.07
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.24
Consensus pattern (53 bp):
GGTGTTTCAAGAGAAACAATCTCAAGGGAAATAATCTCAAGGAAGACAAACTA
Found at i:8337 original size:15 final size:15
Alignment explanation
Indices: 8317--8361 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
8307 TAGTATTTCA
*
8317 AGAAACAGTTTCAAG
1 AGAAACAATTTCAAG
8332 AGAAACAATTTCAAG
1 AGAAACAATTTCAAG
* *
8347 GGAAACAATCTCAAG
1 AGAAACAATTTCAAG
8362 TGTATTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (15 bp):
AGAAACAATTTCAAG
Found at i:8398 original size:52 final size:53
Alignment explanation
Indices: 8324--8474 Score: 184
Period size: 52 Copynumber: 2.9 Consensus size: 53
8314 TCAAGAAACA
* * ***
8324 GTTTCAAGAGAAACAATTTCAAGGGAAACAATCTCAAGTGTA-TTATTTTGGT
1 GTTTCAAGAGAAACAATTTCAAGGGAAACAATCTCAAGTGGAGATAAACTGGT
* *
8376 GTTTCAAGAG-AACAAATCTCAAGGGAAACTATCTCAAG-GGAGATAAACTGGT
1 GTTTCAAGAGAAAC-AATTTCAAGGGAAACAATCTCAAGTGGAGATAAACTGGT
* *
8428 GTTTCAAGAGAAATAATTTCAAGGAAAACAATCTCAAGT-GAGATAAA
1 GTTTCAAGAGAAACAATTTCAAGGGAAACAATCTCAAGTGGAGATAAA
8475 ATTTTGTTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
51 5 0.06
52 77 0.92
53 2 0.02
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.26
Consensus pattern (53 bp):
GTTTCAAGAGAAACAATTTCAAGGGAAACAATCTCAAGTGGAGATAAACTGGT
Found at i:8500 original size:37 final size:37
Alignment explanation
Indices: 8459--8580 Score: 131
Period size: 37 Copynumber: 3.3 Consensus size: 37
8449 AGGAAAACAA
8459 TCTCAAGTGAGATAAAATTTTGTTTTGAGAAAAATTG
1 TCTCAAGTGAGATAAAATTTTGTTTTGAGAAAAATTG
** * * * * *
8496 TCTCAAGTGAGACGAAA-TTTGCTTTAAG-GAAACTA
1 TCTCAAGTGAGATAAAATTTTGTTTTGAGAAAAATTG
* *
8531 TCTCAATTGAGATAAATTTGTTGTTTTGAGAAAAATTG
1 TCTCAAGTGAGATAAAATT-TTGTTTTGAGAAAAATTG
*
8569 TATCAAGTGAGA
1 TCTCAAGTGAGA
8581 CGAAATTTGG
Statistics
Matches: 64, Mismatches: 18, Indels: 5
0.74 0.21 0.06
Matches are distributed among these distances:
35 17 0.27
36 10 0.16
37 23 0.36
38 14 0.22
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (37 bp):
TCTCAAGTGAGATAAAATTTTGTTTTGAGAAAAATTG
Found at i:8564 original size:73 final size:73
Alignment explanation
Indices: 8448--8687 Score: 273
Period size: 73 Copynumber: 3.4 Consensus size: 73
8438 AAATAATTTC
* *
8448 AAGGAAAACAATCTCAAGTGAGATAAAATTTTGTTTTGAGAAAAATTGTCTCAAGTGAGACGAAA
1 AAGGAAAACTATCTCAAGTGAGATAAATTTTTGTTTTGAGAAAAATTGTCTCAAGTGAGACGAAA
8513 TTTGCTTT
66 TTTGCTTT
* *
8521 AAGG-AAACTATCTCAATTGAGATAAATTTGTTGTTTTGAGAAAAATTGTATCAAGTGAGACGAA
1 AAGGAAAACTATCTCAAGTGAGATAAATTT-TTGTTTTGAGAAAAATTGTCTCAAGTGAGACGAA
*
8585 ATTTGGTTT
65 ATTTGCTTT
* * * ** *
8594 CAA-GATAAACCATCTCAAGTGAGAT---TTTAT-TTTT---AAAAACTGTCTCAAGAAAGATGA
1 -AAGGA-AAACTATCTCAAGTGAGATAAATTTTTGTTTTGAGAAAAATTGTCTCAAGTGAGACGA
**
8651 AATTTATTTT
64 AATTTGCTTT
8661 AAGGAAAACTATCTCAAGTGAGATAAA
1 AAGGAAAACTATCTCAAGTGAGATAAA
8688 ACAAAATTCG
Statistics
Matches: 143, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
66 20 0.14
67 28 0.20
70 4 0.03
71 1 0.01
72 25 0.17
73 46 0.32
74 2 0.01
75 17 0.12
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (73 bp):
AAGGAAAACTATCTCAAGTGAGATAAATTTTTGTTTTGAGAAAAATTGTCTCAAGTGAGACGAAA
TTTGCTTT
Found at i:8614 original size:37 final size:36
Alignment explanation
Indices: 8452--8617 Score: 120
Period size: 37 Copynumber: 4.5 Consensus size: 36
8442 AATTTCAAGG
* ** * *
8452 AAAACAATCTCAAGTGAGATAAAATTTTGTTTTGAGA
1 AAAACTATCTCAAGTGAGACGAAA-TTTGGTTTAAGA
* * *
8489 AAAATTGTCTCAAGTGAGACGAAATTTGCTTTAAG-
1 AAAACTATCTCAAGTGAGACGAAATTTGGTTTAAGA
* * * *
8524 GAAACTATCTCAATTGAGA-TAAATTTGTTGTTTTGAGA
1 AAAACTATCTCAAGTGAGACGAAATTTG--G-TTTAAGA
* * *
8562 AAAATTGTATCAAGTGAGACGAAATTTGGTTTCAAGA
1 AAAACTATCTCAAGTGAGACGAAATTTGGTTT-AAGA
* *
8599 TAAACCATCTCAAGTGAGA
1 AAAACTATCTCAAGTGAGA
8618 TTTTATTTTT
Statistics
Matches: 97, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
34 7 0.07
35 15 0.15
36 12 0.12
37 42 0.43
38 14 0.14
39 7 0.07
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (36 bp):
AAAACTATCTCAAGTGAGACGAAATTTGGTTTAAGA
Found at i:8743 original size:21 final size:21
Alignment explanation
Indices: 8701--8743 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8691 AAATTCGAGA
* * *
8701 AAATTTGTCTCTAGTGAGACG
1 AAATTTGTCTCAAGAGAAACG
*
8722 AAATTTGTTTCAAGAGAAACG
1 AAATTTGTCTCAAGAGAAACG
8743 A
1 A
8744 TCTTAAGGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (21 bp):
AAATTTGTCTCAAGAGAAACG
Found at i:8774 original size:20 final size:22
Alignment explanation
Indices: 8746--8785 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8736 AGAAACGATC
*
8746 TTAAGGAAA-ACAAGATTTTCT
1 TTAAGGAAAGACAACATTTTCT
8767 TTAA-GAAAGACAACATTTT
1 TTAAGGAAAGACAACATTTT
8786 TTGGAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TTAAGGAAAGACAACATTTTCT
Found at i:10410 original size:12 final size:13
Alignment explanation
Indices: 10392--10421 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
10382 TCATGCAAAA
10392 GCATATAACCATT
1 GCATATAACCATT
10405 -CATATAACCATT
1 GCATATAACCATT
10417 GCATA
1 GCATA
10422 CATACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (13 bp):
GCATATAACCATT
Found at i:15799 original size:12 final size:12
Alignment explanation
Indices: 15778--15803 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15768 CCTCTCTCTC
15778 TTTCTCTCTTTT
1 TTTCTCTCTTTT
15790 TTTCTCTCTTTT
1 TTTCTCTCTTTT
15802 TT
1 TT
15804 CTTTAATGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTCTCTTTT
Found at i:17964 original size:16 final size:16
Alignment explanation
Indices: 17928--17965 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
17918 TTTATATACG
17928 TTATTATAATATAATA
1 TTATTATAATATAATA
*
17944 ATATTAT-ATATTAATA
1 TTATTATAATA-TAATA
17960 TTATTA
1 TTATTA
17966 GTTATAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATTATAATATAATA
Found at i:20245 original size:47 final size:47
Alignment explanation
Indices: 20168--20262 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 47
20158 TAGCACTATT
* *
20168 TTATTTTTTTTAAATAAATACATGCGAACTAGAAATCATGCGGTTAGG
1 TTATTTTTTTTAAATAAATA-ATGCGAACTAGAAAGCATGAGGTTAGG
20216 TTATTTTTTTTCAAATAAAGT-ATG-GAACTAGAAAGCATGAGGTTAGG
1 TTATTTTTTTT-AAATAAA-TAATGCGAACTAGAAAGCATGAGGTTAGG
20263 ATGTATATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 21 0.49
48 14 0.33
49 7 0.16
50 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (47 bp):
TTATTTTTTTTAAATAAATAATGCGAACTAGAAAGCATGAGGTTAGG
Found at i:26017 original size:20 final size:20
Alignment explanation
Indices: 25992--26042 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
25982 CATGAGTTTA
*
25992 TAAAGCCTTTGGGTCATTTG
1 TAAAGCCTTCGGGTCATTTG
26012 TAAAGCCTTCGGGTCATTTG
1 TAAAGCCTTCGGGTCATTTG
*
26032 TAAAACCTTCG
1 TAAAGCCTTCG
26043 CTCTCCACGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (20 bp):
TAAAGCCTTCGGGTCATTTG
Found at i:26199 original size:90 final size:90
Alignment explanation
Indices: 26090--26537 Score: 253
Period size: 98 Copynumber: 4.8 Consensus size: 90
26080 AAGTATGAAA
*
26090 TCTTCACGGAAGAGTAGTGAAGTAATCCAACTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAAT
1 TCTTCACGGAAGAGTAGTGAAGTAATCCAACTGAGAGTCTGATCTTCACGGAAGAGTAGTGAAAT
* *
26155 TAGATTCTTATAAAATCATCCTTAG
66 TAGATTTTTATAAAATCATCCTAAG
* ** ** * * **
26180 TCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCACTTTCCACGGAAGAGT
1 TCTTCACGGAAGAGTAGTGAAG-TAATCCAACTG-AGAGTC-TGA-T--C-TT-CACGGAAGAGT
* ** * * * *
26245 AGTGGAA-CGGATTTTTCAGCAAAGT-AT--GAAA
58 AGTGAAATTAGATTTTT-A-TAAAATCATCCTAAG
* * * *
26276 TCTTCACGGAAGAATAGTGAAGTAATCTAATTGCGAGTCTGATCTTCACGGAAGAGTAGTGAAAT
1 TCTTCACGGAAGAGTAGTGAAGTAATCCAACTGAGAGTCTGATCTTCACGGAAGAGTAGTGAAAT
* *
26341 TAGATTTTTATCAAATCATCCTCAG
66 TAGATTTTTATAAAATCATCCTAAG
* * * * * * * * *
26366 TCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTTGCTCTCCACGGAAGAGT
1 TCTTCACGGAAGAGTAGTGAAG--TAATC-----C-AACTGAGAGTCTGATCTTCACGGAAGAGT
* ** * * * *
26431 AGTGGAACGAAATTTTCAGCAAAAT-AT--TAAA
58 AGTGAAATTAGATTTTTA-TAAAATCATCCTAAG
* * * * *
26462 TCTTCACGGAAGAGTAGTGAAGTAATCCAATTGTGAGGCTGATCTCCATGGAAGAGTAGTGAAAT
1 TCTTCACGGAAGAGTAGTGAAGTAATCCAACTGAGAGTCTGATCTTCACGGAAGAGTAGTGAAAT
*
26527 TAGATTCTTAT
66 TAGATTTTTAT
26538 TAAGTCAATC
Statistics
Matches: 256, Mismatches: 79, Indels: 49
0.67 0.21 0.13
Matches are distributed among these distances:
87 3 0.01
88 52 0.20
89 10 0.04
90 45 0.18
91 6 0.02
92 7 0.03
93 2 0.01
94 7 0.03
95 5 0.02
96 47 0.18
97 8 0.03
98 56 0.22
99 8 0.03
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (90 bp):
TCTTCACGGAAGAGTAGTGAAGTAATCCAACTGAGAGTCTGATCTTCACGGAAGAGTAGTGAAAT
TAGATTTTTATAAAATCATCCTAAG
Found at i:26360 original size:186 final size:186
Alignment explanation
Indices: 26043--26537 Score: 828
Period size: 186 Copynumber: 2.7 Consensus size: 186
26033 AAAACCTTCG
*
26043 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAACAAAGTATGAAATCTTCACGGAAGAGTAGT
1 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
*
26108 GAAGTAATCCAACTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
66 GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
*
26173 TCCTTAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
131 TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
* *
26229 CTTTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAATAGT
1 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
* * * *
26294 GAAGTAATCTAATTGCGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTTTTATCAAATCA
66 GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
**
26359 TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTTG
131 TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
* * * *
26415 CTCTCCACGGAAGAGTAGTGGAACGAAATTTTCAGCAAAATATTAAATCTTCACGGAAGAGTAGT
1 CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
* * *
26480 GAAGTAATCCAATTGTGAGGCTGATCTCCATGGAAGAGTAGTGAAATTAGATTCTTAT
66 GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTAT
26538 TAAGTCAATC
Statistics
Matches: 286, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
186 286 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (186 bp):
CTCTCCACGGAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAAATCTTCACGGAAGAGTAGT
GAAGTAATCCAATTGTGAGTCTGATCTTCACGGAAGAGTAGTGAAATTAGATTCTTATAAAATCA
TCCTCAGTCTTCACGGAAGAGTAGTGAAGCAAAAGCAAGAGCAAAATCAAAATTCA
Found at i:26836 original size:16 final size:16
Alignment explanation
Indices: 26815--26852 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26805 TTATATACGT
26815 TATTATA-ATATAATAA
1 TATTATATAT-TAATAA
*
26831 TATTATATATTAATAT
1 TATTATATATTAATAA
26847 TATTAT
1 TATTAT
26853 TTATAAAGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATATATTAATAA
Found at i:26962 original size:25 final size:25
Alignment explanation
Indices: 26894--26954 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
26884 AGGCACACAT
26894 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCCAAGTTACAAGCTCGGTTGTAG
26919 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCCAAGTTACAAGCTCGGTTGTAG
26944 GCCC-AGTTACA
1 GCCCAAGTTACA
26955 CAACTCGGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 7 0.19
25 29 0.81
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (25 bp):
GCCCAAGTTACAAGCTCGGTTGTAG
Found at i:26968 original size:24 final size:23
Alignment explanation
Indices: 26894--26962 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 23
26884 AGGCACACAT
*
26894 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCC-AGTTACAAACTCGG-TGTAG
*
26919 GCCCAAGTTACAAGCTCGGTTGTAG
1 GCCC-AGTTACAAACTCGG-TGTAG
26944 GCCCAGTTACACAACTCGG
1 GCCCAGTTACA-AACTCGG
26963 GCTAGGTCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (23 bp):
GCCCAGTTACAAACTCGGTGTAG
Found at i:30175 original size:44 final size:42
Alignment explanation
Indices: 30123--30319 Score: 114
Period size: 44 Copynumber: 5.1 Consensus size: 42
30113 ATTTTAAATA
30123 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATGGGTT
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT-GGTT
** *
30166 TTAGTATTTTAAT-TAAGTTTTAAG-A---TA--TT--AT--TT
1 TTA-TATTTT-ATCTTTGTTTTAGGTATTTTAGTTTAAATGGTT
30199 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTT
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAAT-GGTT
**
30242 TTAATATTTTAAT-TAAGTTTTAGG-A---TA--TT--AT--TT
1 TT-ATATTTT-ATCTTTGTTTTAGGTATTTTAGTTTAAATGGTT
* * *
30275 TTATATTTTATCTTTGTTTTATGTATTTTAGTTTTAATTGTT
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATGGTT
30317 TTA
1 TTA
30320 ATTAGGATTT
Statistics
Matches: 116, Mismatches: 11, Indels: 55
0.64 0.06 0.30
Matches are distributed among these distances:
31 4 0.03
32 29 0.25
33 11 0.09
36 8 0.07
38 8 0.07
40 8 0.07
42 5 0.04
43 9 0.08
44 30 0.26
45 4 0.03
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.61
Consensus pattern (42 bp):
TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATGGTT
Found at i:30230 original size:76 final size:76
Alignment explanation
Indices: 30123--30321 Score: 337
Period size: 76 Copynumber: 2.6 Consensus size: 76
30113 ATTTTAAATA
* *
30123 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATGGGTTTTAGTATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTA
30188 AGATATTATTT
66 AGATATTATTT
30199 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTA
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTA
*
30264 GGATATTATTT
66 AGATATTATTT
* * *
30275 TTATATTTTATCTTTGTTTTATGTATTTTAGTTTTAAT-TGTTTTAAT
1 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAAT
30322 TAGGATTTAA
Statistics
Matches: 117, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
75 8 0.07
76 109 0.93
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.61
Consensus pattern (76 bp):
TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAATATTTTAATTAAGTTTTA
AGATATTATTT
Found at i:30991 original size:29 final size:28
Alignment explanation
Indices: 30935--30991 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
30925 ACCAATTCAG
* * **
30935 TTATTTTATTTATTTGTTTATTTAATTT
1 TTATTTTATTTACTTCTTTAAATAATTT
30963 TTATTTTATTATACTTCTTTAAATAATTT
1 TTATTTTATT-TACTTCTTTAAATAATTT
30992 AAAACCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (28 bp):
TTATTTTATTTACTTCTTTAAATAATTT
Found at i:31536 original size:64 final size:64
Alignment explanation
Indices: 31475--31596 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 64
31465 GTAAAATCGG
*
31475 GTACAGGTCA-ACTCAGGTTGATTTGACACTAAATCCAGATCGGGTTCAGGTCAGGTCAAATCA
1 GTACAGGTCATACTCAGGTTGATTTGACACCAAATCCAGATCGGGTTCAGGTCAGGTCAAATCA
* * * ** *
31538 GTTCGGGTTATTTTCAGGTTGATTTGACACCAGATCCAGATCGGGTTCAGGTCAGGTCA
1 GTACAGGTCATACTCAGGTTGATTTGACACCAAATCCAGATCGGGTTCAGGTCAGGTCA
31597 TTTTCAGTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
63 7 0.14
64 44 0.86
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (64 bp):
GTACAGGTCATACTCAGGTTGATTTGACACCAAATCCAGATCGGGTTCAGGTCAGGTCAAATCA
Found at i:32329 original size:18 final size:19
Alignment explanation
Indices: 32300--32335 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32290 ATATATAAAC
32300 TATATGTATAAACTATATT
1 TATATGTATAAACTATATT
*
32319 TATAT-TATAAATTATAT
1 TATATGTATAAACTATAT
32336 AATTATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
TATATGTATAAACTATATT
Found at i:32335 original size:31 final size:29
Alignment explanation
Indices: 32271--32360 Score: 85
Period size: 31 Copynumber: 3.0 Consensus size: 29
32261 AAAAATATAA
32271 TATATATATAAATAAGTTTATATATAAAC
1 TATATATATAAATAAGTTTATATATAAAC
* *
32300 TATATGTATAAACTATA-TTTATATTATAAAT
1 TATATATATAAA-TA-AGTTTATA-TATAAAC
*
32331 TATATA-ATTATTATAAGTTATATATATAAA
1 TATATATA-TA-AATAAGTT-TATATATAAA
32361 TTATGTTTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
29 11 0.22
30 10 0.20
31 24 0.48
32 5 0.10
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (29 bp):
TATATATATAAATAAGTTTATATATAAAC
Found at i:32364 original size:13 final size:13
Alignment explanation
Indices: 32265--32401 Score: 70
Period size: 13 Copynumber: 10.5 Consensus size: 13
32255 ATTGAAAAAA
32265 ATATAATATATATAT
1 ATATAA-AT-TATAT
* *
32280 AAATAAGTT-TAT
1 ATATAAATTATAT
*
32292 ATATAAACTATAT
1 ATATAAATTATAT
* *
32305 GTATAAACTATAT
1 ATATAAATTATAT
* *
32318 -T-TATATTATAA
1 ATATAAATTATAT
32329 ATTATATAA-T-TAT
1 A-TATA-AATTATAT
*
32342 -TATAAGTTATAT
1 ATATAAATTATAT
*
32354 ATATAAATTATGTTT
1 ATATAAATTA--TAT
* *
32369 ATATGAACTATAT
1 ATATAAATTATAT
32382 ATATAAATTATAT
1 ATATAAATTATAT
*
32395 ATGTAAA
1 ATATAAA
32402 CTAGATATGT
Statistics
Matches: 92, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
10 1 0.01
11 12 0.13
12 13 0.14
13 46 0.50
14 4 0.04
15 16 0.17
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.45
Consensus pattern (13 bp):
ATATAAATTATAT
Found at i:32386 original size:15 final size:15
Alignment explanation
Indices: 32270--32421 Score: 61
Period size: 13 Copynumber: 10.2 Consensus size: 15
32260 AAAAAATATA
32270 ATATATATATAAA-T
1 ATATATATATAAACT
*
32284 AAGTTTATATATAAAC-
1 -A-TATATATATAAACT
*
32300 -TATATGTATAAACT
1 ATATATATATAAACT
*
32314 ATATTTATATTATAAATT
1 ATA--TATA-TATAAACT
*
32332 ATATA-ATTATTATAAGT
1 ATATATA-TA-TA-AACT
*
32349 -TATATATATAAATT
1 ATATATATATAAACT
* * *
32363 ATGTTTATATGAAC-
1 ATATATATATAAACT
32377 -TATATATATAAA-T
1 ATATATATATAAACT
*
32390 -TATATATGTAAACT
1 ATATATATATAAACT
* * *
32404 AGATATGTATATACT
1 ATATATATATAAACT
32419 ATA
1 ATA
32422 AAAAGTATAT
Statistics
Matches: 103, Mismatches: 20, Indels: 28
0.68 0.13 0.19
Matches are distributed among these distances:
13 31 0.30
14 4 0.04
15 30 0.29
16 21 0.20
17 7 0.07
18 10 0.10
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (15 bp):
ATATATATATAAACT
Found at i:32486 original size:17 final size:17
Alignment explanation
Indices: 32443--32484 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
32433 GTTTATAAAC
32443 TATAAT-TTT-TATTAA
1 TATAATATTTATATTAA
*
32458 TATAATATTTATATTTA
1 TATAATATTTATATTAA
32475 TATATATATT
1 TATA-ATATT
32485 ATTCAAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 3 0.13
17 9 0.39
18 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TATAATATTTATATTAA
Found at i:32618 original size:19 final size:20
Alignment explanation
Indices: 32596--32633 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32586 GAATATAGGG
32596 AAATTGAG-AATTTAAAGGA
1 AAATTGAGAAATTTAAAGGA
*
32615 AAATTGGGAAATTTAAAGG
1 AAATTGAGAAATTTAAAGG
32634 GAACATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (20 bp):
AAATTGAGAAATTTAAAGGA
Found at i:32623 original size:27 final size:27
Alignment explanation
Indices: 32565--32627 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
32555 GGGAATTTAG
** *
32565 AGGGAAATTGAGAAATTTTGAGAATAT
1 AGGGAAATTGAGAAATTTAAAGAAAAT
32592 AGGGAAATTGAG-AATTTAAAGGAAAAT
1 AGGGAAATTGAGAAATTTAAA-GAAAAT
*
32619 TGGGAAATT
1 AGGGAAATT
32628 TAAAGGGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGAAATTGAGAAATTTAAAGAAAAT
Found at i:32991 original size:21 final size:20
Alignment explanation
Indices: 32945--32991 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
32935 ATTCTGAACC
32945 CTAAATCATAAACACAAAAA
1 CTAAATCATAAACACAAAAA
* *
32965 CTTAAATCTTAAACACTAAACA
1 C-TAAATCATAAACAC-AAAAA
32987 CTAAA
1 CTAAA
32992 CTACATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.57, C:0.21, G:0.00, T:0.21
Consensus pattern (20 bp):
CTAAATCATAAACACAAAAA
Found at i:33034 original size:7 final size:7
Alignment explanation
Indices: 33024--33088 Score: 58
Period size: 7 Copynumber: 9.3 Consensus size: 7
33014 TAGTATACAA
33024 AAACCCT
1 AAACCCT
*
33031 AAACCTT
1 AAACCCT
* *
33038 AAATCAT
1 AAACCCT
*
33045 AAACACT
1 AAACCCT
**
33052 AAACTTT
1 AAACCCT
*
33059 AAACCAT
1 AAACCCT
*
33066 AAACACT
1 AAACCCT
33073 AAACCCT
1 AAACCCT
33080 AAACCCT
1 AAACCCT
33087 AA
1 AA
33089 TGTAAATGAA
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (7 bp):
AAACCCT
Found at i:33053 original size:21 final size:21
Alignment explanation
Indices: 33024--33084 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
33014 TAGTATACAA
* *
33024 AAACCCTAAACCTTAAATCAT
1 AAACACTAAACCTTAAACCAT
*
33045 AAACACTAAACTTTAAACCAT
1 AAACACTAAACCTTAAACCAT
*
33066 AAACACTAAACCCTAAACC
1 AAACACTAAACCTTAAACC
33085 CTAATGTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACACTAAACCTTAAACCAT
Found at i:33469 original size:20 final size:20
Alignment explanation
Indices: 33437--33484 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
33427 ATTTTATATA
*
33437 ATAT-GTATGTATAAACCAT
1 ATATAGTATATATAAACCAT
*
33456 ATATAGTATATATAAACTAT
1 ATATAGTATATATAAACCAT
33476 ATATA-TATA
1 ATATAGTATA
33485 ACCTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (20 bp):
ATATAGTATATATAAACCAT
Found at i:33482 original size:15 final size:15
Alignment explanation
Indices: 33457--33508 Score: 77
Period size: 15 Copynumber: 3.4 Consensus size: 15
33447 ATAAACCATA
33457 TATAGTATATATAAAC
1 TATA-TATATATAAAC
*
33473 TATATATATATAACC
1 TATATATATATAAAC
*
33488 TATATATATAAAAAC
1 TATATATATATAAAC
33503 TATATA
1 TATATA
33509 AAGTATATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 29 0.88
16 4 0.12
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:33576 original size:7 final size:7
Alignment explanation
Indices: 33566--33609 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
33556 TAGTTTATAG
33566 AAACCCT
1 AAACCCT
*
33573 AAACCAT
1 AAACCCT
*
33580 AAACACT
1 AAACCCT
*
33587 AAACACT
1 AAACCCT
*
33594 AAACCAT
1 AAACCCT
33601 AAACCCT
1 AAACCCT
33608 AA
1 AA
33610 TGTAAATAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.14
Consensus pattern (7 bp):
AAACCCT
Found at i:33595 original size:21 final size:21
Alignment explanation
Indices: 33566--33609 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
33556 TAGTTTATAG
*
33566 AAACCCTAAACCATAAACACT
1 AAACACTAAACCATAAACACT
*
33587 AAACACTAAACCATAAACCCT
1 AAACACTAAACCATAAACACT
33608 AA
1 AA
33610 TGTAAATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.55, C:0.32, G:0.00, T:0.14
Consensus pattern (21 bp):
AAACACTAAACCATAAACACT
Found at i:33707 original size:521 final size:521
Alignment explanation
Indices: 33065--34005 Score: 1667
Period size: 521 Copynumber: 1.8 Consensus size: 521
33055 CTTTAAACCA
* *
33065 TAAACACTAAACCCTAAACCCTAATGTAAATGAACTAACACTAATGTATATATATTTGTAATAAA
1 TAAACACTAAACCATAAACCCTAATGTAAATGAACTAACACTAATGCATATATATTTGTAATAAA
*
33130 AGAGTGGACTTATGTATTGGGTCTATGTAAACTAATGTAAATGGACTAGTACTATTGCAAATTGA
66 AGAGTGGACTTATGTATTGGGTCTATGTAAACTAATGTAAATGGACTAGTACTATTGCAAATGGA
*
33195 CTTATTTTTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATT
131 CTTATTTTTGGGTTTCATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATT
*
33260 AACCTAACATGCAACTAAAATATTAATTATGTAAATGAAATTAATATGACATGTACTACTATTTA
196 AACCTAACATGCAACTAAAATATTAATTATGCAAATGAAATTAATATGACATGTACTACTATTTA
33325 TGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTTATATA
261 TGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTTATATA
33390 ATTTACATTTAAATAATTTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCA
326 ATTTACATTTAAATAATTTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCA
33455 TATATAGTATATATAAACTATATATA-TATAACCTATATATATAAAAACTATATAAAGTATATTA
391 TATATAGTATATATAAA-TATATATACTATAACCTATATATATAAAAACTATATAAAGTATATTA
33519 CTTATATAGTTTATAGAAACACTATGCTTAAAGTATATAGTTTATAGAAACCCTAAACCATAAAC
455 CTTATATAGTTTATAGAAACACTATGCTTAAAGTATATAGTTTATAGAAACCCTAAACCATAAAC
33584 AC
520 AC
*
33586 TAAACACTAAACCATAAACCCTAATGTAAAT-AGACTAGCACTAATGCATATATATTTGTAATAA
1 TAAACACTAAACCATAAACCCTAATGTAAATGA-ACTAACACTAATGCATATATATTTGTAATAA
* *
33650 AAGAGT-GAGTTTATGTCTTGGG-CATATGTAAACTAATGTAAATGGACTA-TCACTATTGCAAA
65 AAGAGTGGA-CTTATGTATTGGGTC-TATGTAAACTAATGTAAATGGACTAGT-ACTATTGCAAA
* *
33712 TGGACTTATTTTTTGGTTTCATTATTGCTTATTCATAACAACAAAATAAATGGGCTATTAATGTG
127 TGGACTTATTTTTGGGTTTCATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTG
33777 AATTAACCTAACATGCAACTAAAATATTAATTATGCAAATGAAATTAATATGACATGTACTACTA
192 AATTAACCTAACATGCAACTAAAATATTAATTATGCAAATGAAATTAATATGACATGTACTACTA
33842 TTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTTA
257 TTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTTA
*
33907 TATAATTTATATTTAAATAATTTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAA
322 TATAATTTACATTTAAATAATTTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAA
* * * *
33972 ACCATGTATAGTGTGTATATATATATATACTATA
387 ACCATATATAGTATATATAAATATATATACTATA
34006 TAAAATAAAT
Statistics
Matches: 400, Mismatches: 15, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
520 13 0.03
521 387 0.97
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (521 bp):
TAAACACTAAACCATAAACCCTAATGTAAATGAACTAACACTAATGCATATATATTTGTAATAAA
AGAGTGGACTTATGTATTGGGTCTATGTAAACTAATGTAAATGGACTAGTACTATTGCAAATGGA
CTTATTTTTGGGTTTCATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATT
AACCTAACATGCAACTAAAATATTAATTATGCAAATGAAATTAATATGACATGTACTACTATTTA
TGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTTATATA
ATTTACATTTAAATAATTTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCA
TATATAGTATATATAAATATATATACTATAACCTATATATATAAAAACTATATAAAGTATATTAC
TTATATAGTTTATAGAAACACTATGCTTAAAGTATATAGTTTATAGAAACCCTAAACCATAAACA
C
Found at i:34092 original size:7 final size:7
Alignment explanation
Indices: 34082--34160 Score: 72
Period size: 7 Copynumber: 11.3 Consensus size: 7
34072 TAGTTTATAG
*
34082 AAACCTT
1 AAACCAT
34089 AAACCAT
1 AAACCAT
*
34096 AAATCAT
1 AAACCAT
34103 AAACCAT
1 AAACCAT
*
34110 AAACCCT
1 AAACCAT
**
34117 AAACTTT
1 AAACCAT
34124 AAACCAT
1 AAACCAT
*
34131 AAA-TATT
1 AAACCA-T
34138 AAA-CACT
1 AAACCA-T
34145 AAACCAT
1 AAACCAT
34152 AAACCAT
1 AAACCAT
34159 AA
1 AA
34161 CGTAAATGGA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
6 1 0.02
7 56 0.95
8 2 0.03
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (7 bp):
AAACCAT
Found at i:34350 original size:23 final size:24
Alignment explanation
Indices: 34324--34373 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
34314 TTATTTTTTC
34324 TTTATAAAAATTAAACTATA-TAA
1 TTTATAAAAATTAAACTATATTAA
*
34347 TTTATATAAATTAAACTATATTAA
1 TTTATAAAAATTAAACTATATTAA
34371 TTT
1 TTT
34374 TCCTTTGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTATAAAAATTAAACTATATTAA
Found at i:34698 original size:17 final size:16
Alignment explanation
Indices: 34643--34700 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
34633 TACAGATCAG
*
34643 GTTAAAAACAGGTCAA
1 GTTAAAAACAAGTCAA
** *
34659 GAAAAAAACATGTCAA
1 GTTAAAAACAAGTCAA
*
34675 GTTAAAAACAAGTCAG
1 GTTAAAAACAAGTCAA
*
34691 GTTGAAAACA
1 GTTAAAAACA
34701 GGTCGGTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.17
Consensus pattern (16 bp):
GTTAAAAACAAGTCAA
Found at i:34774 original size:22 final size:23
Alignment explanation
Indices: 34749--34818 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 23
34739 TTCGGGTTCA
34749 TATCA-GTCGGATGCAGTTCGGG
1 TATCATGTCGGATGCAGTTCGGG
* * *
34771 TATCATATTTTCGG-TTCAATTCGGG
1 TATC--A-TGTCGGATGCAGTTCGGG
*
34796 T-TCAGGTCGGATGCAGTTCGGG
1 TATCATGTCGGATGCAGTTCGGG
34818 T
1 T
34819 TCGGATCCAC
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
21 4 0.11
22 15 0.42
24 3 0.08
25 10 0.28
26 4 0.11
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (23 bp):
TATCATGTCGGATGCAGTTCGGG
Found at i:36603 original size:14 final size:14
Alignment explanation
Indices: 36584--36610 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36574 GAAATGAGAA
36584 AAAAATTTATTTAT
1 AAAAATTTATTTAT
36598 AAAAATTTATTTA
1 AAAAATTTATTTA
36611 ACAAAGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAAATTTATTTAT
Found at i:57328 original size:12 final size:12
Alignment explanation
Indices: 57311--57349 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
57301 CCGTAAAAGA
*
57311 ATGACATGTGTT
1 ATGACACGTGTT
57323 ATGACACACGTGTT
1 ATG--ACACGTGTT
57337 ATGACACGTGTT
1 ATGACACGTGTT
57349 A
1 A
57350 GTATGAACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 13 0.54
14 11 0.46
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.33
Consensus pattern (12 bp):
ATGACACGTGTT
Found at i:58819 original size:14 final size:14
Alignment explanation
Indices: 58800--58826 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58790 ATTTATTTTT
58800 TAATTATAGTTATA
1 TAATTATAGTTATA
58814 TAATTATAGTTAT
1 TAATTATAGTTAT
58827 TATTTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TAATTATAGTTATA
Found at i:58973 original size:22 final size:21
Alignment explanation
Indices: 58948--58988 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
58938 TATAAAAAAA
58948 TATTTTTATTAAATATTTTTGG
1 TATTTTTATTAAA-ATTTTTGG
*
58970 TATTTTTATTTAAATTTTT
1 TATTTTTATTAAAATTTTT
58989 AAATAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TATTTTTATTAAAATTTTTGG
Found at i:59908 original size:14 final size:14
Alignment explanation
Indices: 59889--59950 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 14
59879 CATTCGGTAA
*
59889 TATGTTCATTTATT
1 TATGTTCATTCATT
*
59903 TATGTTCGTTCATT
1 TATGTTCATTCATT
* * *
59917 TATATTCGTTCGTT
1 TATGTTCATTCATT
* *
59931 TATGTGCGTTCATT
1 TATGTTCATTCATT
59945 TATGTT
1 TATGTT
59951 TAGTCCAATC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 40 1.00
ACGTcount: A:0.16, C:0.11, G:0.15, T:0.58
Consensus pattern (14 bp):
TATGTTCATTCATT
Found at i:59927 original size:18 final size:18
Alignment explanation
Indices: 59892--59930 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
59882 TCGGTAATAT
*
59892 GTTCATTTATTTATGTTC
1 GTTCATTTATTTACGTTC
59910 GTTCATTTATATT-CGTTC
1 GTTCATTTAT-TTACGTTC
59928 GTT
1 GTT
59931 TATGTGCGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.59
Consensus pattern (18 bp):
GTTCATTTATTTACGTTC
Found at i:60162 original size:23 final size:23
Alignment explanation
Indices: 60132--60187 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
60122 ATTCATTTAA
*
60132 GTTCGTTTATGTTCATTTATTGT
1 GTTCGTTTATGTTCACTTATTGT
* *
60155 GTTCGTTTACGTTCGCTTATTGT
1 GTTCGTTTATGTTCACTTATTGT
60178 GTTCGTTTAT
1 GTTCGTTTAT
60188 CATTTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.11, C:0.12, G:0.20, T:0.57
Consensus pattern (23 bp):
GTTCGTTTATGTTCACTTATTGT
Found at i:61207 original size:20 final size:20
Alignment explanation
Indices: 61182--61251 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
61172 GCGAAGTTCG
61182 CGTTGCGATTCATTCCAAAT
1 CGTTGCGATTCATTCCAAAT
* * *
61202 CGTTGCGA-T-AGTCGAAGTT
1 CGTTGCGATTCATTCCAA-AT
*
61221 CACATTGCGATTCATTCCAAAT
1 --CGTTGCGATTCATTCCAAAT
61243 CGTTGCGAT
1 CGTTGCGAT
61252 AGGCGAAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
18 5 0.14
19 2 0.05
20 16 0.43
21 7 0.19
22 2 0.05
23 5 0.14
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (20 bp):
CGTTGCGATTCATTCCAAAT
Found at i:61218 original size:41 final size:41
Alignment explanation
Indices: 61123--61262 Score: 217
Period size: 41 Copynumber: 3.4 Consensus size: 41
61113 GATTCGCAAC
* *
61123 GCGATAGTCGAAGTTCACATTGCGATTTATTCCAAATTCGTT
1 GCGATAGGCGAAGTTCACATTGCGATTCATTCCAAA-TCGTT
* * *
61165 GCAATAGGCGAAGTTCGCGTTGCGATTCATTCCAAATCGTT
1 GCGATAGGCGAAGTTCACATTGCGATTCATTCCAAATCGTT
*
61206 GCGATAGTCGAAGTTCACATTGCGATTCATTCCAAATCGTT
1 GCGATAGGCGAAGTTCACATTGCGATTCATTCCAAATCGTT
61247 GCGATAGGCGAAGTTC
1 GCGATAGGCGAAGTTC
61263 GTGAATATTT
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 57 0.65
42 31 0.35
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (41 bp):
GCGATAGGCGAAGTTCACATTGCGATTCATTCCAAATCGTT
Found at i:67336 original size:21 final size:19
Alignment explanation
Indices: 67298--67336 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
67288 AAATTTAAAA
*
67298 TTTTTGAAAAATTTTTGTG
1 TTTTTGAAAAATTGTTGTG
67317 TTTTTGATAAAATTAGTTGT
1 TTTTTGA-AAAATT-GTTGT
67337 AACATCTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 6 0.35
21 4 0.24
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.56
Consensus pattern (19 bp):
TTTTTGAAAAATTGTTGTG
Found at i:73974 original size:20 final size:20
Alignment explanation
Indices: 73945--73996 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
73935 AATTGAAGTA
* *
73945 GTATCAATACTGATATGG-AG
1 GTATCGATACTGAGA-GGAAG
**
73965 GTATCGATACCAAGAGGAAG
1 GTATCGATACTGAGAGGAAG
73985 GTATCGATACTG
1 GTATCGATACTG
73997 TAATTAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (20 bp):
GTATCGATACTGAGAGGAAG
Found at i:74460 original size:15 final size:15
Alignment explanation
Indices: 74440--74514 Score: 55
Period size: 15 Copynumber: 5.0 Consensus size: 15
74430 GATTTTATTA
74440 ATATGTGAATGTGTT
1 ATATGTGAATGTGTT
**
74455 ATATGTGAAAATGCTT
1 ATATGTGAATGTG-TT
**
74471 -TACATGAATGTGTT
1 ATATGTGAATGTGTT
*
74485 CTATGTGAA-GATGTT
1 ATATGTGAATG-TGTT
* *
74500 TTATATGAATGTGTT
1 ATATGTGAATGTGTT
74515 CTAAATTAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
14 3 0.07
15 40 0.87
16 3 0.07
ACGTcount: A:0.29, C:0.04, G:0.23, T:0.44
Consensus pattern (15 bp):
ATATGTGAATGTGTT
Found at i:74515 original size:30 final size:30
Alignment explanation
Indices: 74445--74517 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
74435 TATTAATATG
*
74445 TGAATGTGTTATATGTGAAAATGCTTTACA
1 TGAATGTGTTCTATGTGAAAATGCTTTACA
* * *
74475 TGAATGTGTTCTATGTGAAGATGTTTTATA
1 TGAATGTGTTCTATGTGAAAATGCTTTACA
74505 TGAATGTGTTCTA
1 TGAATGTGTTCTA
74518 AATTAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.44
Consensus pattern (30 bp):
TGAATGTGTTCTATGTGAAAATGCTTTACA
Found at i:81410 original size:30 final size:30
Alignment explanation
Indices: 81374--81452 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
81364 TATTAATATG
81374 TGAATGTGTTATATGTGAAAATGCTTTACA
1 TGAATGTGTTATATGTGAAAATGCTTTACA
* * *
81404 TGAATGTGTTCTATGTGAAGATGCTTTATA
1 TGAATGTGTTATATGTGAAAATGCTTTACA
* * *
81434 TGAATATGTTGTACGTGAA
1 TGAATGTGTTATATGTGAA
81453 TAAAATATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (30 bp):
TGAATGTGTTATATGTGAAAATGCTTTACA
Found at i:86001 original size:21 final size:21
Alignment explanation
Indices: 85972--86013 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
85962 AGGCGTAAAC
85972 ATAATGTATCGATACTTATTAT
1 ATAATGTATCGATACTT-TTAT
85994 ATAA-GTATCGATACTTTTAT
1 ATAATGTATCGATACTTTTAT
86014 TTCAATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.45
Consensus pattern (21 bp):
ATAATGTATCGATACTTTTAT
Found at i:86222 original size:20 final size:20
Alignment explanation
Indices: 86177--86222 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
86167 GTAAACATAA
*
86177 AGTATCGATACTTTTTGTAT
1 AGTATCGATACTTTTAGTAT
*
86197 AGGTATCGATACTTTTAGTCT
1 A-GTATCGATACTTTTAGTAT
86218 AGTAT
1 AGTAT
86223 TCTTCTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (20 bp):
AGTATCGATACTTTTAGTAT
Found at i:86500 original size:198 final size:199
Alignment explanation
Indices: 85884--87175 Score: 1611
Period size: 198 Copynumber: 6.5 Consensus size: 199
85874 TGATACTTAG
* * ** * *
85884 AATTTTGAAA-AGTATTACTTTAAAGTAATACATAAATTTACAATGTAAACGGTAAAAATATACC
1 AATTTTGAAACCG-ATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACC
* * * * *
85948 GATTTAATGTTAATAGGCGTAAACATAATGTATCGATACTTATTATATAAGTATCGATACTTTTA
65 GATTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTA
* * * * * * ** *
86013 TTTCAATATACATCTCAAACAATTTGCACTCAAAAAAGTATCGATACATGTATAACAAGTATCGA
130 GTCCAATATGCTTCTC-AACAATTTGCACGC-ACAAAGTATCGATACACATGTAACAAGTATCGA
**
86078 TAC-TTA
193 TACGCGA
*
86084 TAATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACA
1 -AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACC
*
86149 GGTTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTA
65 GATTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTA
* * * *
86214 GTCTAGTATTCTTCTCAACAATTTTCACGCACAAAGTATCGATACACATGTAACAAGTATCGATA
130 GTCCAATATGCTTCTCAACAATTTGCACGCACAAAGTATCGATACACATGTAACAAGTATCGATA
* *
86279 CACAA
195 CGCGA
* * * **
86284 AATTTTGAAACTGATTACTTTAAAGTTATAGGTAAATTTATAATGTCAACATTAAAAGTCTACCG
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACCG
* * *
86349 ATTTAATGATAATAGGCGTAAACATAAAGTATCTATAC-CTTTGTATAGGTATTGATACTTTTAG
66 ATTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTAG
* * * * * **
86413 TCCAACATGTTTCTGAACAATTTACACGCACAAAGTATCGATACACATGTAACATGTATATATAC
131 TCCAATATGCTTCTCAACAATTTGCACGCACAAAGTATCGATACACATGTAACAAGTATCGATAC
*
86478 GTGA
196 GCGA
* * *
86482 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACAGTAAAAGTCTATC-
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACCG
* * *
86546 AGTTTAATGCTAATAGGCATAAACATAAAGTATCGATACTTTTTGTATAGGTATCTATACTTTTA
66 A-TTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTA
* ** *
86611 GTCCAATATGCTTCTCAACAATTTACACATAGAAAGTATCGATACACATGTAACAAGTATCGATA
130 GTCCAATATGCTTCTCAACAATTTGCACGCACAAAGTATCGATACACATGTAACAAGTATCGATA
*
86676 CGCGG
195 CGCGA
* * *
86681 AATTTTAAAACCGATTACTTTAAAGTTATAGGTAAATTTATAA-GTTAACGGTAAAAGTCTACCG
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACCG
* * * *
86745 ATTTAATGATAATAGGCGTAAACATCAAGTATTGATACTTTTTGTATAGATATCGATACTTGTAG
66 ATTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTAG
* ** * * *
86810 TCCAGTATATTTCTCAATAATTTGCACGCACAAAGTATCGATACACATGTATA-AAATATCAATA
131 TCCAATATGCTTCTCAACAATTTGCACGCACAAAGTATCGATACACATGTA-ACAAGTATCGATA
* *
86874 TGCGG
195 CGCGA
* * *
86879 ATTTTTGAAACCGATTACTTTAAGGTTATAGGTAAATTTACAATGTAAACGATAAAAGTCTACC-
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACCG
* *
86943 AGTTT-A--AT-ATAGGCGTAAACATCAAA-TATTGATACTTTTAGTATAGGTATCGATACTTTT
66 A-TTTAATGATAATAGGCGTAAACAT-AAAGTATCGATACTTTTTGTATAGGTATCGATACTTTT
** *
87003 AGTATAATATGCTTCTCAACAATTTGCACGCACAAAGTATTTCGATACACATATATA-AAGTATC
129 AGTCCAATATGCTTCTCAACAATTTGCACGCACAAAGTA--TCGATACACATGTA-ACAAGTATC
*
87067 GAAACGCGA
191 GATACGCGA
* **
87076 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTAGTG
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACCG
* * *
87141 GTTTAATGATAATAGGCGTAAACATCAGGTATCGA
66 ATTTAATGATAATAGGCGTAAACATAAAGTATCGA
Statistics
Matches: 948, Mismatches: 126, Indels: 34
0.86 0.11 0.03
Matches are distributed among these distances:
195 78 0.08
196 4 0.00
197 88 0.09
198 346 0.36
199 272 0.29
200 16 0.02
201 143 0.15
202 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (199 bp):
AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAAGTCTACCG
ATTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTAG
TCCAATATGCTTCTCAACAATTTGCACGCACAAAGTATCGATACACATGTAACAAGTATCGATAC
GCGA
Found at i:86627 original size:397 final size:394
Alignment explanation
Indices: 85884--87165 Score: 1652
Period size: 397 Copynumber: 3.2 Consensus size: 394
85874 TGATACTTAG
* * ** * * *
85884 AATTTTGAAA-AGTATTACTTTAAAGTAATACATAAATTTACAATGTAAACGGTAAAAATATACC
1 AATTTTGAAACCG-ATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTACC
* * * * *
85948 GATTTAATGTTAATAGGCGTAAACATAATGTATCGATACTTATTATATAAGTATCGATACTTTTA
65 GATTTAATGATAATAGGCGTAAACATAAAGTATCTATACTT-TTGTATAGGTATCGATACTTTTA
* * ** * * ** * **
86013 TTTCAATATACATCTCAAACAATTTGCACTCAAAAAAGTATCGATACATGTATAACAAGTATCGA
129 GTCCAATATATTTCT-AAACAATTTGCACGC-ACAAAGTATCGATACACATGTAACAAGTATATA
*
86078 TAC-TTATAATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGGTAAAA
192 TACGTGA-AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAAC-GTAAAA
86142 GTCTACAGGTTTAATGATAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGAT
255 GTCTACA-GTTTAATG-TAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGAT
* * *
86207 ACTTTTAGTCTAGTATTCTTCTCAACAATTTTCACGCACAAAGTATCGATACACATGTAACAAGT
318 ACTTTTAGTCTAATATGCTTCTCAACAATTTACACGCACAAAGTATCGATACACATGTAACAAGT
* *
86272 ATCGATACACAA
383 ATCGATACGCGA
* * **
86284 AATTTTGAAACTGATTACTTTAAAGTTATAGGTAAATTTATAATGTCAACATTAAAAGTCTACCG
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTACCG
* *
86349 ATTTAATGATAATAGGCGTAAACATAAAGTATCTATACCTTTGTATAGGTATTGATACTTTTAGT
66 ATTTAATGATAATAGGCGTAAACATAAAGTATCTATACTTTTGTATAGGTATCGATACTTTTAGT
* * * * *
86414 CCAACATGTTTCTGAACAATTTACACGCACAAAGTATCGATACACATGTAACATGTATATATACG
131 CCAATATATTTCTAAACAATTTGCACGCACAAAGTATCGATACACATGTAACAAGTATATATACG
*
86479 TGAAATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACAGTAAAAGTCTA
196 TGAAATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAAC-GTAAAAGTCTA
* *
86544 TCAGTTTAATGCTAATAGGCATAAACATAAAGTATCGATACTTTTTGTATAGGTATCTATACTTT
260 -CAGTTTAATG-TAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTT
* ** *
86609 TAGTCCAATATGCTTCTCAACAATTTACACATAGAAAGTATCGATACACATGTAACAAGTATCGA
323 TAGTCTAATATGCTTCTCAACAATTTACACGCACAAAGTATCGATACACATGTAACAAGTATCGA
*
86674 TACGCGG
388 TACGCGA
* * *
86681 AATTTTAAAACCGATTACTTTAAAGTTATAGGTAAATTTATAA-GTTAACGGTAAAAGTCTACCG
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTACCG
* * *
86745 ATTTAATGATAATAGGCGTAAACATCAAGTAT-TGATACTTTTTGTATAGATATCGATACTTGTA
66 ATTTAATGATAATAGGCGTAAACATAAAGTATCT-ATAC-TTTTGTATAGGTATCGATACTTTTA
* * * *
86809 GTCCAGTATATTTCTCAATAATTTGCACGCACAAAGTATCGATACACATGTATA-AAATATCAAT
129 GTCCAATATATTTCTAAACAATTTGCACGCACAAAGTATCGATACACATGTA-ACAAGTAT--AT
* * *
86873 ATGCG-G-ATTTTTGAAACCGATTACTTTAAGGTTATAGGTAAATTTACAATGTAAACGATAAAA
191 ATACGTGAAATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACG-TAAAA
* *
86936 GTCTACCAGTTTAA--T-ATAGGCGTAAACATCAAA-TATTGATACTTTTAGTATAGGTATCGAT
255 GTCTA-CAGTTTAATGTAATAGGCGTAAACAT-AAAGTATCGATACTTTTTGTATAGGTATCGAT
* * *
86997 ACTTTTAGTATAATATGCTTCTCAACAATTTGCACGCACAAAGTATTTCGATACACATATATA-A
318 ACTTTTAGTCTAATATGCTTCTCAACAATTTACACGCACAAAGTA--TCGATACACATGTA-ACA
*
87061 AGTATCGAAACGCGA
380 AGTATCGATACGCGA
**
87076 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTAGTG
1 AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTACCG
*
87141 GTTTAATGATAATAGGCGTAAACAT
66 ATTTAATGATAATAGGCGTAAACAT
87166 CAGGTATCGA
Statistics
Matches: 777, Mismatches: 91, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
393 77 0.10
394 4 0.01
395 69 0.09
396 97 0.12
397 387 0.50
398 18 0.02
399 35 0.05
400 89 0.11
401 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (394 bp):
AATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTCAACGGTAAAAGTCTACCG
ATTTAATGATAATAGGCGTAAACATAAAGTATCTATACTTTTGTATAGGTATCGATACTTTTAGT
CCAATATATTTCTAAACAATTTGCACGCACAAAGTATCGATACACATGTAACAAGTATATATACG
TGAAATTTTGAAACCGATTACTTTAAAGTTATAGGTAAATTTACAATGTAAACGTAAAAGTCTAC
AGTTTAATGTAATAGGCGTAAACATAAAGTATCGATACTTTTTGTATAGGTATCGATACTTTTAG
TCTAATATGCTTCTCAACAATTTACACGCACAAAGTATCGATACACATGTAACAAGTATCGATAC
GCGA
Done.