genome.fa.s4972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004972.1 Hibiscus syriacus cultivar Beakdansim tig00011167_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75435

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87--124	17	2.4	16	86	8	51	84	2	2	10	0.83
190--276	3	29.7	3	86	9	126	67	0	0	32	0.91
189--280	17	5.4	16	82	14	121	68	0	0	31	0.90
8116--8160	22	2.1	21	91	4	72	42	0	11	46	1.39
8142--8255	36	3.1	35	80	12	122	44	4	9	41	1.57
8163--8255	36	2.5	36	89	6	134	46	5	8	39	1.57
9306--9355	16	3.2	15	83	8	55	18	4	2	76	1.04
10376--10414	18	2.2	18	100	0	78	23	0	10	66	1.22
13100--13162	24	2.6	24	76	0	72	39	23	12	23	1.89
33387--33442	23	2.4	23	78	3	58	39	23	16	21	1.92
34375--34729	177	2.0	177	98	0	692	34	27	3	33	1.75
40675--40740	23	2.9	23	86	2	71	28	25	25	19	1.99
40692--40740	23	2.2	22	92	3	80	28	22	28	20	1.98
42904--42951	22	2.2	22	88	3	80	41	0	12	45	1.42
42926--43152	36	6.3	35	76	11	203	45	5	8	40	1.58
43141--43197	22	2.5	24	80	16	75	47	0	5	47	1.24
43165--43224	29	2.2	26	85	8	84	45	0	6	48	1.29
43238--43311	19	3.9	18	78	18	71	35	0	1	63	1.03
43230--43310	3	27.3	3	72	20	55	35	0	1	62	1.03
43230--43311	26	3.0	26	75	20	80	35	0	1	63	1.02
45633--45698	31	2.1	31	88	0	96	31	19	4	43	1.71
45928--45974	24	2.0	24	86	0	67	44	19	17	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49216--49410	54	3.5	53	71	17	148	44	5	1	49	1.31
49578--49652	13	5.8	13	73	16	59	36	18	5	40	1.74
52098--52140	20	2.1	21	86	4	61	39	11	2	46	1.53
53092--53426	44	7.6	44	82	6	340	30	20	16	32	1.95
53050--53426	132	2.9	130	81	6	366	31	20	15	32	1.94
55101--55161	29	2.0	31	90	6	99	63	3	21	11	1.41
56465--56983	138	3.8	137	80	4	571	28	11	14	45	1.80
57288--57324	19	1.9	19	100	0	74	24	0	5	70	1.08
59254--59463	65	3.2	64	78	9	203	31	23	17	26	1.97
61529--61579	18	2.8	18	96	0	93	37	9	7	45	1.67
64876--64972	44	2.2	44	83	10	119	28	21	21	27	1.99
66393--66427	18	1.9	18	88	0	52	28	42	2	25	1.69
67337--67369	15	2.3	15	94	5	59	33	6	0	60	1.21
67719--67873	65	2.4	63	84	7	179	33	20	15	30	1.94
67719--67873	64	2.4	64	82	9	174	33	20	15	30	1.94
68843--69365	139	3.8	138	80	4	502	27	10	14	46	1.78
69666--69703	19	2.0	19	94	0	67	26	0	2	71	1.00
71637--72144	136	3.7	137	81	4	526	26	12	15	45	1.82
72452--72492	19	2.1	20	90	4	66	24	0	4	70	1.06

Tables:   1

The End!