genome.fa.s4973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004973.1 Hibiscus syriacus cultivar Beakdansim tig00011168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108597

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554--592	4	10.2	4	89	10	64	25	0	0	74	0.82
549--592	15	2.9	15	96	0	79	25	2	0	72	0.96
557--591	11	3.2	11	92	8	54	25	0	0	74	0.82
754--860	56	1.9	56	86	3	153	28	14	10	46	1.77
1713--1789	15	5.1	15	70	6	66	38	24	11	24	1.89
3459--3567	24	4.5	24	73	11	89	48	14	13	22	1.79
8283--8321	17	2.2	18	90	4	62	20	2	25	51	1.60
8517--8577	31	2.0	31	83	6	79	29	1	13	55	1.47
11255--11407	29	5.3	29	82	4	168	40	22	5	30	1.78
11255--11407	56	2.7	58	82	5	186	40	22	5	30	1.78
12670--12700	4	7.8	4	92	0	53	22	3	0	74	0.96
12863--12971	57	1.9	57	96	0	200	25	15	10	48	1.76
13679--13729	25	2.0	25	85	7	68	31	19	23	25	1.98
13832--13908	15	5.1	15	70	6	66	38	24	11	24	1.89
15590--15659	24	2.9	25	76	6	72	48	15	10	25	1.76
15639--15698	24	2.5	24	77	0	75	45	16	11	26	1.82
15590--15698	48	2.3	48	79	6	114	46	15	11	25	1.80
20085--20134	17	2.9	17	85	11	66	64	2	0	34	1.05
20506--20544	17	2.2	18	90	4	62	20	2	25	51	1.60
20735--20794	31	2.0	31	83	9	79	30	1	11	56	1.45
23480--23634	29	5.4	29	85	2	179	39	23	5	30	1.78
23480--23633	57	2.7	58	87	3	213	39	23	5	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25958--26008	25	2.0	25	85	7	68	31	19	23	25	1.98
26141--26189	15	3.3	15	75	11	55	40	26	10	22	1.86
28241--28279	17	2.2	18	90	4	62	20	2	25	51	1.60
28477--28537	31	2.0	31	83	6	79	31	1	11	55	1.45
28823--28989	22	7.7	22	69	18	109	45	1	5	47	1.36
28889--28988	11	9.3	11	71	12	73	42	2	7	49	1.41
28777--29028	22	11.7	22	68	22	108	44	2	6	47	1.41
29001--29338	11	31.5	11	64	20	76	47	6	3	42	1.47
29004--29134	33	3.9	34	74	9	101	46	6	3	42	1.48
29112--29250	13	10.5	13	68	16	70	48	5	3	41	1.44
29191--29310	63	1.9	60	83	9	152	47	3	2	46	1.32
29914--29957	23	1.9	23	95	0	79	36	0	18	45	1.49
28845--29930	2	544.0	2	64	21	263	47	3	4	43	1.43
30547--30933	185	2.1	182	90	4	602	41	3	8	47	1.48
31104--31295	49	3.8	50	81	5	199	41	18	7	32	1.78
31298--31367	21	3.6	21	66	18	60	15	21	15	47	1.83
31573--31638	26	2.6	25	81	9	80	15	3	3	78	0.99
31567--31668	25	4.1	24	76	9	82	16	1	6	74	1.12
31652--31690	21	1.9	20	89	5	60	17	2	10	69	1.28
31736--31921	25	7.7	24	73	22	117	17	2	10	68	1.30
31739--31921	101	1.9	95	87	8	269	18	2	10	68	1.31
31773--31921	51	3.0	48	76	16	167	17	3	10	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31679--31922	25	9.7	24	65	18	61	17	2	10	69	1.30
31915--31944	15	2.0	15	93	0	51	20	0	16	63	1.31
32799--32872	37	2.0	36	82	7	87	28	5	2	63	1.30
33290--33315	8	3.2	8	100	0	52	11	0	0	88	0.52
33475--33583	57	1.9	57	94	0	191	25	15	8	50	1.72
34273--34340	25	2.7	25	97	0	127	33	20	20	25	1.97
41279--41355	24	3.2	24	87	3	100	32	20	22	24	1.98
43011--43075	28	2.3	28	100	0	130	24	9	21	44	1.81
43812--43847	16	2.2	16	90	0	54	38	5	16	38	1.72
44330--44400	30	2.4	30	83	4	99	33	16	2	46	1.62
46425--46471	19	2.5	19	96	0	85	44	0	12	42	1.42
48053--48087	15	2.3	15	95	0	61	45	5	8	40	1.58
59391--59473	37	2.3	36	93	2	139	28	10	18	42	1.84
62051--62089	14	2.7	15	88	7	55	61	2	0	35	1.10
62248--62603	138	2.6	137	88	1	534	24	16	24	33	1.96
62539--62669	54	2.4	54	88	0	199	26	17	23	32	1.97
62691--62734	19	2.2	19	84	8	52	36	9	13	40	1.76
75646--75706	17	3.6	16	74	24	54	0	19	9	70	1.15
75869--75923	22	2.5	22	84	0	74	20	10	47	21	1.80
76182--76229	3	15.7	3	79	12	53	62	2	0	35	1.07
76182--76237	12	4.3	13	85	12	71	62	1	0	35	1.06
78709--78778	36	1.9	37	97	2	133	21	34	27	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84954--85004	15	3.3	15	81	5	66	29	31	21	17	1.96
86491--86535	18	2.6	17	79	6	54	73	0	2	24	0.95
90151--90211	28	2.2	28	79	5	70	36	1	3	59	1.24
90205--90255	16	3.2	16	80	20	63	62	0	0	37	0.95
90185--90238	25	2.2	25	83	9	67	53	0	0	46	1.00
90237--90261	13	1.9	13	100	0	50	72	0	0	28	0.86
91352--91453	31	3.3	30	76	10	100	10	9	23	55	1.64
99453--99494	21	2.0	22	90	4	68	28	23	23	23	2.00
100341--100394	22	2.5	22	78	0	63	38	22	9	29	1.85
100667--100709	6	7.2	6	94	0	77	32	48	16	2	1.58
101858--101947	6	15.2	6	95	2	119	27	48	16	6	1.71
103094--103184	6	15.2	6	97	0	155	30	49	16	3	1.62
103726--103779	23	2.4	21	76	11	54	55	3	3	37	1.35

Tables:   1

The End!