Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004974.1 Hibiscus syriacus cultivar Beakdansim tig00011169_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66039

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1869--1903
17
2.1
17
88
0
52
17
0
8
74
1.06
4620--4645
2
13.0
2
100
0
52
50
0
0
50
1.00
5856--5929
32
2.3
33
88
4
107
35
9
22
32
1.87
5869--5930
32
1.9
32
93
6
108
32
9
24
33
1.88
6187--6312
66
1.9
66
91
1
209
37
21
9
31
1.86
6524--6733
43
4.9
43
80
1
233
31
29
17
20
1.96
6531--6719
86
2.2
86
87
0
279
31
30
17
21
1.96
6811--7345
84
6.4
83
86
1
685
33
23
17
25
1.97
6795--7345
167
3.3
165
84
3
694
33
22
18
25
1.97
6816--7345
251
2.1
251
87
1
749
32
23
17
25
1.97
8592--8654
30
2.1
30
84
0
81
23
11
4
60
1.49
8777--8811
18
2.0
17
88
5
52
17
5
0
77
0.96
13107--13144
20
1.9
20
84
10
51
42
0
7
50
1.31
19593--19648
28
2.0
28
96
0
103
44
21
5
28
1.74
25739--25806
27
2.6
27
93
4
113
42
16
10
30
1.81
32662--32700
21
1.9
21
89
5
62
17
25
23
33
1.96
32663--32779
10
12.2
9
75
12
90
16
23
27
32
1.96
32685--32737
19
2.8
19
94
0
88
11
18
30
39
1.86
32662--32774
48
2.3
49
82
8
142
16
23
27
32
1.96
32731--32778
19
2.5
20
90
6
66
18
27
29
25
1.98
32783--32836
22
2.9
17
73
23
54
20
44
20
14
1.86
32785--32827
22
2.0
22
90
0
68
20
44
20
13
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40037--40092
17
3.3
17
100
0
112
17
46
23
12
1.82
45007--45208
101
2.0
101
99
0
395
42
12
15
29
1.84
48917--48959
20
2.2
20
100
0
86
9
23
0
67
1.19
50807--50882
37
2.1
37
92
2
127
35
7
9
47
1.65
52663--52711
24
2.0
24
92
0
80
14
26
10
48
1.75
55893--55951
26
2.4
25
83
8
75
33
5
23
37
1.77
55903--55956
26
2.1
26
89
3
83
37
3
24
35
1.73
61254--61278
10
2.5
10
100
0
50
12
0
0
88
0.53
61844--61869
12
2.2
12
100
0
52
7
15
30
46
1.74
61953--62041
40
2.2
40
80
7
92
29
21
21
28
1.98
61993--62332
82
4.2
82
80
4
339
32
17
17
32
1.93
62026--62234
41
5.1
41
65
16
101
32
16
18
33
1.93

Tables:   1

The End!