Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004975.1 Hibiscus syriacus cultivar Beakdansim tig00011170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99105

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--93
12
4.7
12
82
11
69
0
5
12
81
0.84
32--88
22
2.6
22
91
0
96
1
7
12
78
1.01
39--97
21
2.9
21
85
9
77
0
5
11
83
0.81
7081--7132
24
2.2
24
82
0
59
28
19
23
28
1.98
8400--8460
24
2.6
23
74
7
61
8
16
9
65
1.45
9280--9456
90
2.0
90
86
2
248
29
21
27
21
1.99
10484--11598
576
1.9
572
88
5
1701
26
19
13
40
1.89
15330--15386
12
5.2
10
76
19
60
82
8
7
1
0.91
15330--15386
11
5.1
11
74
4
60
82
8
7
1
0.91
15349--15381
14
2.4
14
100
0
66
81
6
12
0
0.85
19670--19706
15
2.4
16
95
4
67
16
16
0
67
1.23
25419--25451
10
3.4
10
83
8
50
81
3
15
0
0.80
25437--25478
13
3.4
12
78
15
50
78
0
16
4
0.91
25430--25485
26
2.2
26
81
12
62
75
3
14
7
1.16
32846--32910
13
5.4
12
75
21
57
29
3
35
32
1.73
32828--32932
36
2.9
36
94
1
176
29
4
35
30
1.78
36873--36924
22
2.3
23
93
3
88
28
3
34
32
1.76
37885--37923
18
2.2
18
90
0
60
28
20
23
28
1.99
56284--56333
23
2.2
24
86
10
70
66
12
14
8
1.45
57479--57504
11
2.4
11
100
0
52
50
34
0
15
1.45
58127--58179
19
2.6
20
85
8
63
41
5
15
37
1.70
61565--61609
8
5.5
8
87
12
65
0
20
2
77
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61556--61612
16
3.6
16
86
13
73
0
19
3
77
0.92
62335--62385
19
2.6
20
93
3
86
45
5
13
35
1.68
63093--63132
20
2.0
21
85
5
55
50
7
17
25
1.72
65217--65252
15
2.4
15
90
0
54
44
0
5
50
1.25
65369--65452
42
2.0
42
100
0
168
26
16
14
42
1.86
67036--67087
21
2.6
21
90
6
81
34
13
5
46
1.67
67753--67779
11
2.5
11
100
0
54
74
7
18
0
1.05
69615--69647
16
2.1
16
100
0
66
33
18
6
42
1.75
73052--73084
16
2.1
16
100
0
66
33
18
6
42
1.75
74342--74384
20
2.2
20
87
4
61
32
9
9
48
1.67
74724--74828
36
2.9
36
91
1
167
30
36
4
28
1.78
78904--78987
36
2.3
36
95
0
150
29
35
4
29
1.78
81463--81505
22
2.0
22
90
0
68
13
0
25
60
1.34
83218--83263
18
2.6
18
92
0
74
32
6
10
50
1.63
84422--84472
19
2.6
20
90
3
77
43
5
15
35
1.71
86777--86813
15
2.5
14
87
12
56
64
0
27
8
1.21
86951--87019
35
2.0
35
82
0
84
37
4
30
27
1.76
90102--90152
20
2.6
20
90
3
77
31
11
7
49
1.68
90452--90499
11
4.2
11
78
19
53
8
16
14
60
1.57
92066--92133
34
2.0
33
83
8
84
72
4
4
19
1.19
92628--92667
16
2.5
16
95
0
71
30
12
0
57
1.36
96921--96959
15
2.5
15
87
4
51
66
5
12
15
1.41

Tables:   1

The End!