genome.fa.s4976.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004976.1 Hibiscus syriacus cultivar Beakdansim tig00011171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78349

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804--1335	45	11.9	45	82	2	640	40	9	18	31	1.82
854--1396	135	4.0	134	84	5	436	40	9	19	31	1.82
7089--7621	45	11.9	45	86	2	714	40	9	19	30	1.83
7091--7621	135	3.9	135	91	2	802	40	9	19	30	1.83
17452--17489	18	2.1	18	100	0	76	36	36	10	15	1.82
19437--19488	15	3.5	15	76	10	61	46	1	5	46	1.38
19428--19489	30	2.0	31	90	3	99	43	3	8	45	1.49
19522--19592	29	2.5	29	84	4	92	50	5	5	38	1.49
19572--19608	16	2.3	16	90	0	56	45	2	8	43	1.47
19563--19650	41	2.1	41	89	0	131	47	2	9	40	1.48
21793--21982	92	2.1	92	98	0	371	32	12	11	43	1.79
21809--22007	92	2.2	92	87	2	233	34	13	13	38	1.83
24719--26411	864	2.0	864	93	0	2931	36	7	23	31	1.83
26457--26626	54	3.1	54	93	0	286	30	11	20	37	1.88
28856--28929	30	2.5	30	86	2	96	43	27	5	24	1.76
30010--30049	20	2.0	20	90	0	62	45	0	0	55	0.99
30084--30138	30	2.0	28	82	13	69	43	5	1	49	1.36
30480--30540	16	3.8	16	74	8	61	50	26	13	9	1.72
32427--32458	6	5.2	6	92	7	55	0	65	0	34	0.93
33595--33708	42	2.7	42	90	0	174	16	14	17	51	1.76
33900--33948	19	2.4	22	83	16	61	40	0	0	59	0.98
33999--34061	27	2.2	28	83	10	76	47	0	3	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33915--34072	58	2.7	56	75	17	133	46	0	1	50	1.16
34150--34220	31	2.3	32	81	15	87	52	4	0	43	1.20
34205--34244	20	2.0	20	85	9	55	60	0	0	40	0.97
34479--34521	21	2.0	21	86	0	59	27	20	9	41	1.83
34455--34535	15	5.1	15	69	19	65	30	19	7	41	1.79
34896--35058	90	1.8	89	95	1	299	36	11	6	46	1.65
37445--37588	59	2.5	59	82	4	168	29	14	14	41	1.85
37529--37629	47	2.1	47	83	0	121	30	17	14	36	1.91
37545--37680	47	2.9	47	84	0	155	27	16	14	41	1.87
37564--37680	24	5.0	24	73	9	98	27	15	13	43	1.84
39340--39408	18	3.8	18	73	5	68	42	8	11	37	1.72
42208--42234	6	4.5	6	100	0	54	48	0	0	51	1.00
47299--47346	2	24.0	2	100	0	96	50	0	0	50	1.00
48710--48743	17	2.0	17	88	11	52	26	11	2	58	1.47
49666--49777	20	5.6	20	89	4	120	31	21	20	26	1.98
50526--50579	24	2.2	24	93	0	90	20	18	20	40	1.91
50760--50796	14	2.6	14	91	4	56	51	21	21	5	1.68
52833--52867	18	1.9	18	94	0	61	54	25	2	17	1.57
53036--53102	34	2.0	34	81	0	80	37	28	11	22	1.90
53070--53198	20	6.4	20	85	3	134	31	24	17	27	1.97
53028--53198	40	4.4	40	75	11	140	32	23	16	27	1.96
53070--53198	60	2.2	60	85	0	168	31	24	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53237--53294	20	2.9	20	78	0	71	13	17	24	44	1.85
54850--54961	42	2.7	42	75	8	104	23	18	36	21	1.95
55447--55515	20	3.5	20	91	0	102	37	26	17	18	1.93
55533--55580	20	2.4	20	92	0	78	18	20	27	33	1.96
57473--57528	20	2.8	20	91	0	85	50	23	16	10	1.76
57476--57547	20	3.6	20	88	0	81	41	23	18	16	1.89
57942--57983	22	1.9	22	85	9	59	21	14	38	26	1.91
58273--58343	20	3.5	20	75	11	74	33	19	19	26	1.96
58328--58403	20	3.8	20	77	6	82	28	28	15	26	1.96
58314--58406	40	2.3	40	83	0	114	30	27	15	26	1.96
58586--58627	22	1.9	22	85	0	57	26	40	14	19	1.89
59013--59056	19	2.3	19	88	7	63	13	18	22	45	1.84
59024--59107	20	4.2	20	81	1	80	16	19	20	44	1.87
59083--59126	20	2.2	20	83	0	52	13	13	15	56	1.67
60839--60888	18	2.8	18	100	0	100	32	20	6	42	1.76
60893--60960	20	3.4	20	83	0	73	36	20	19	23	1.95
61003--61091	20	4.4	20	89	0	115	19	16	25	38	1.92
61003--61101	20	4.9	20	81	7	85	19	16	24	40	1.91
61581--61684	21	5.0	20	72	10	75	22	34	19	24	1.96
63075--63136	14	4.3	14	73	6	52	38	1	14	45	1.55
63235--63288	20	2.7	20	85	0	72	44	25	18	11	1.83
63331--63609	20	14.9	20	72	14	164	25	16	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63351--63547	74	2.7	74	80	6	211	23	16	23	36	1.94
63323--63493	94	1.8	94	89	0	270	25	16	22	35	1.94
63445--63601	54	2.9	54	83	0	179	22	15	24	36	1.94
63580--63849	140	1.9	140	95	0	486	42	15	12	28	1.84
63909--63949	12	3.4	12	89	0	64	17	0	24	58	1.38
63916--63950	6	5.8	6	93	0	61	17	0	20	62	1.32
63909--63957	24	2.0	24	84	0	62	14	4	20	61	1.49
65982--66006	13	1.9	13	100	0	50	8	20	32	40	1.81
66206--66259	24	2.2	24	90	0	81	40	22	18	18	1.91
67079--67137	20	3.0	20	84	0	73	30	20	25	23	1.98
67101--67146	20	2.3	20	84	0	56	32	17	23	26	1.97
67115--67210	40	2.4	40	84	6	140	26	19	17	36	1.94
67141--67206	20	3.3	20	100	0	132	24	19	16	39	1.92
70331--70367	16	2.3	16	100	0	74	18	21	29	29	1.97
70503--70553	11	4.5	11	79	13	50	25	21	21	31	1.98
75605--75910	47	6.5	47	89	0	452	43	13	22	20	1.87
75768--75885	20	5.2	20	66	25	65	41	12	26	19	1.87
75779--75866	27	3.5	26	70	20	80	42	14	25	18	1.88

Tables:   1

The End!