genome.fa.s4978.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004978.1 Hibiscus syriacus cultivar Beakdansim tig00011175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73467

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4652--4686	12	2.9	12	91	0	52	37	25	5	31	1.80
4995--5116	64	1.9	64	81	6	149	26	19	19	34	1.96
9209--9233	11	2.3	11	100	0	50	52	0	16	32	1.44
9835--9902	31	2.2	31	86	2	93	38	10	17	33	1.84
10779--10859	26	3.2	26	94	3	139	20	14	29	34	1.93
10830--10915	40	2.2	40	85	8	115	23	16	26	33	1.95
12094--12123	13	2.3	13	94	0	51	40	13	6	40	1.71
20652--20684	16	2.0	17	88	5	50	39	9	9	42	1.68
20875--20953	24	3.2	24	89	3	122	21	17	22	37	1.94
25281--25314	2	17.5	2	93	6	61	50	0	0	50	1.00
26187--26239	22	2.5	22	96	3	99	43	9	16	30	1.80
30300--30478	98	1.8	99	86	3	263	33	16	17	31	1.93
32234--32348	37	3.1	37	92	0	185	39	19	20	20	1.93
32433--32504	36	2.0	36	91	0	117	38	20	19	20	1.93
32574--33141	55	10.5	55	81	9	528	30	20	20	27	1.98
32648--32744	48	2.0	48	90	4	151	24	20	25	28	1.99
32593--32908	103	3.0	101	81	10	359	29	20	22	28	1.98
32574--33139	218	2.6	212	81	7	595	31	20	20	28	1.97
39086--39183	21	4.8	20	72	15	74	36	22	19	21	1.95
39150--39343	20	9.6	20	81	5	221	35	25	19	19	1.95
39150--39343	60	3.2	60	83	0	253	35	25	19	19	1.95
39719--39789	33	2.2	33	89	0	106	11	23	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39869--39974	21	5.6	20	70	16	91	45	18	25	10	1.81
39867--39945	21	3.8	21	79	12	92	45	16	26	11	1.81
39862--39978	41	3.1	38	79	14	136	46	17	26	10	1.80
39932--39985	14	3.5	14	73	22	54	42	24	25	7	1.80
39921--39990	33	2.1	33	97	0	131	47	20	25	7	1.75
39927--40001	33	2.3	33	92	0	123	46	24	22	6	1.75
39997--40094	19	5.7	19	70	22	81	10	24	22	42	1.84
40019--40108	14	5.7	14	74	23	81	8	25	23	42	1.83
40002--40116	33	3.5	33	95	0	212	9	24	20	45	1.81
41815--42381	93	6.1	93	97	0	1080	22	12	18	46	1.83
42425--42553	19	7.3	19	75	17	125	45	28	17	8	1.77
42461--42553	33	2.8	32	91	4	150	46	27	18	7	1.76
42425--42553	52	2.5	52	74	14	140	45	28	17	8	1.77
42549--42683	19	7.6	19	76	16	137	10	19	24	45	1.81
42571--42627	14	3.7	14	77	20	60	8	21	24	45	1.80
42554--42646	33	2.8	33	98	0	177	9	20	22	47	1.79
43544--43579	14	2.6	14	95	0	63	33	0	22	44	1.53
43686--43785	19	5.5	19	84	12	147	45	17	23	15	1.85
43686--43802	53	2.2	53	95	1	209	43	17	24	14	1.86
43792--43940	19	8.6	19	72	21	130	15	22	18	44	1.86
43792--43908	52	2.2	52	92	0	198	16	20	17	45	1.86
43849--43940	33	2.8	33	98	1	175	13	23	18	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43868--43922	14	3.6	14	73	21	56	10	23	20	45	1.82
43999--44096	19	5.4	19	84	13	143	45	17	22	14	1.84
43999--44115	53	2.2	53	98	1	227	44	17	23	13	1.85
44812--45061	20	12.5	20	87	1	268	19	18	24	37	1.94
45048--45165	21	5.7	21	70	10	82	22	16	26	35	1.94
45028--45126	42	2.4	43	77	11	100	21	18	23	37	1.94
54781--54819	16	2.4	16	95	0	69	17	28	15	38	1.91
55088--55134	14	3.7	14	71	26	50	44	0	4	51	1.21
55087--55136	23	2.1	24	96	3	93	48	0	4	48	1.20
55299--55369	14	5.1	14	77	3	63	22	0	28	49	1.50
55293--55369	41	1.9	40	86	7	111	24	0	25	49	1.51
55444--55473	13	2.3	13	100	0	60	40	0	6	53	1.27
55454--55504	20	2.4	21	74	9	59	41	7	5	45	1.57
55899--56007	49	2.2	49	85	3	139	33	4	10	52	1.55
55221--56263	547	1.9	540	90	5	1641	35	8	12	43	1.72
55991--56035	23	1.9	24	95	4	83	42	2	4	51	1.34
57310--57368	21	2.8	21	81	0	73	18	1	27	52	1.55
57310--57381	21	3.5	20	75	7	63	19	1	26	52	1.54
57403--57474	20	3.5	20	81	7	83	38	6	5	48	1.53
57472--57498	13	2.1	13	100	0	54	55	0	0	44	0.99
57472--57514	13	3.1	14	86	6	52	55	0	2	41	1.12
57613--57677	34	1.9	34	87	6	96	20	0	30	49	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57613--57679	14	4.9	14	75	3	64	19	0	31	49	1.49
57844--57898	21	2.5	21	77	11	58	41	16	5	36	1.71
59722--59774	7	7.3	7	83	8	70	52	0	1	45	1.11
60864--60946	27	3.1	27	92	0	139	42	10	4	42	1.61
61164--61247	9	9.4	9	70	16	50	19	8	1	71	1.18
61216--61255	19	2.2	18	86	4	53	17	10	0	72	1.11
63474--63509	12	3.0	12	91	0	54	55	0	33	11	1.35
65130--65311	95	1.9	95	90	2	294	30	17	20	31	1.96
66739--66810	37	1.9	37	85	0	99	26	20	12	40	1.88
66739--66905	87	1.9	87	91	0	271	30	17	11	39	1.86
66817--67128	102	3.1	102	89	0	473	31	17	12	37	1.88
66913--66999	37	2.4	37	82	1	95	26	20	14	37	1.92
67015--67083	36	1.9	36	82	5	86	23	18	14	43	1.87
67116--67192	29	2.6	29	85	4	91	36	16	10	36	1.83
67223--67359	68	2.0	70	84	8	183	32	17	10	39	1.85
68971--69060	27	3.3	26	86	7	117	36	13	4	45	1.63
69194--69226	2	17.0	2	87	6	50	45	0	0	54	0.99
69192--69262	25	2.8	24	74	15	65	39	4	1	54	1.28
69287--69335	25	2.0	24	84	15	64	18	10	0	71	1.13
69270--69354	13	6.1	13	70	25	50	16	10	1	71	1.19
70263--70306	18	2.5	18	96	3	81	40	18	27	13	1.88
71588--71639	20	2.7	20	81	3	61	30	0	1	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73149--73223	33	2.2	33	97	2	141	17	14	14	53	1.73

Tables:   1

The End!