Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004979.1 Hibiscus syriacus cultivar Beakdansim tig00011177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105977

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6734--6790
29
2.0
29
82
0
69
61
12
14
12
1.57
9510--9539
13
2.4
12
94
5
51
43
0
30
26
1.55
18361--18404
22
2.0
22
95
0
79
72
0
6
20
1.07
19045--19192
76
1.9
78
87
4
221
58
10
3
27
1.46
21923--21957
18
1.9
18
88
11
54
80
0
0
20
0.72
22020--22060
21
1.9
22
90
5
66
75
0
4
19
0.98
22651--22842
64
2.7
70
83
13
220
58
12
1
27
1.43
22706--22869
76
2.2
75
88
3
240
56
11
2
29
1.47
23861--23890
15
2.0
15
93
0
51
83
0
10
6
0.81
23855--23898
21
2.1
21
87
8
63
81
0
13
4
0.83
32635--32672
19
2.2
18
86
13
53
0
13
10
76
1.02
33434--33538
50
2.3
46
82
12
119
52
12
1
33
1.50
36107--36145
19
2.1
19
95
0
69
20
38
15
25
1.92
36044--36252
65
3.2
64
83
8
212
29
26
17
26
1.97
36093--36255
65
2.5
65
85
3
222
30
26
15
26
1.96
39396--39505
35
3.1
35
86
1
148
30
3
34
30
1.75
49501--49542
13
3.4
12
80
12
50
73
4
14
7
1.21
49501--49547
24
1.9
25
87
12
71
72
4
17
6
1.22
56720--56770
15
3.4
14
91
5
66
11
21
0
66
1.23
56979--57022
9
4.7
9
86
8
61
84
2
13
0
0.73
71995--72028
6
5.5
6
86
6
50
82
2
14
0
0.79
71992--72028
12
3.0
12
84
7
56
81
5
13
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76468--76509
13
3.4
12
81
15
50
71
4
14
9
1.28
82626--82675
19
2.6
19
77
3
55
34
8
8
50
1.61
87000--87065
31
2.1
32
86
8
91
16
22
1
59
1.46
86996--87082
33
2.7
32
82
10
97
14
21
1
62
1.39
87958--88013
22
2.5
22
83
16
71
67
0
16
16
1.23
88046--88079
17
1.9
18
88
5
52
32
0
38
29
1.58
91252--91286
15
2.4
14
90
4
52
40
11
2
45
1.55
93017--93099
30
2.7
30
78
17
91
19
19
0
61
1.35
93017--93099
31
2.7
31
80
14
93
19
19
0
61
1.35
96896--96922
10
2.7
10
100
0
54
85
0
0
14
0.61

Tables:   1

The End!