Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000498.1 Hibiscus syriacus cultivar Beakdansim tig00000950_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84737

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3287--3331
22
2.1
22
84
8
58
22
24
4
48
1.68
3903--4309
54
7.6
54
86
2
523
29
17
20
31
1.96
7567--7612
2
23.5
2
95
4
85
47
0
0
52
1.00
9770--10163
54
7.3
54
84
0
464
33
18
17
30
1.94
9742--10163
162
2.6
162
83
3
512
33
17
17
31
1.94
13107--13176
20
3.5
20
75
9
54
34
12
25
27
1.92
13822--14038
53
4.1
53
93
0
371
25
15
19
39
1.91
16291--16340
26
1.9
26
95
0
91
32
8
10
50
1.65
18757--18809
28
2.0
27
85
7
72
39
3
0
56
1.17
18808--18858
13
3.7
13
80
14
66
39
0
0
60
0.97
18802--18854
23
2.3
24
81
15
67
39
0
0
60
0.97
21954--21997
2
22.0
2
100
0
88
50
0
0
50
1.00
22103--22146
2
22.0
2
100
0
88
50
0
0
50
1.00
23399--23449
3
17.7
3
84
8
70
64
0
0
35
0.94
23854--24266
202
2.0
199
84
6
537
30
20
17
31
1.96
24099--24580
264
1.8
264
94
0
858
31
20
17
31
1.95
25631--25738
54
2.0
54
87
0
153
29
22
12
36
1.90
27635--27703
5
14.6
5
74
19
60
1
17
0
81
0.77
27635--27704
17
4.2
16
78
7
77
1
17
0
81
0.77
27637--27699
33
1.9
33
90
6
101
1
19
0
79
0.82
27635--27706
28
2.6
28
78
10
94
1
16
0
81
0.75
30147--30185
20
2.0
20
94
0
69
46
10
25
17
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33231--33270
11
3.3
12
89
6
55
67
0
2
30
1.04
33324--33431
29
3.6
29
73
13
78
61
3
8
26
1.42
34708--34738
16
1.9
16
93
0
53
41
0
6
51
1.27
35068--35365
126
2.3
126
79
11
333
30
17
15
36
1.91
40591--40639
6
8.2
6
100
0
98
51
16
16
16
1.78
58618--58672
18
3.7
14
80
19
67
80
0
12
7
0.91
59898--60022
23
5.4
23
83
3
135
36
21
21
20
1.95
60137--60229
45
2.1
44
83
2
114
35
17
5
41
1.72
60677--60726
20
2.5
20
100
0
100
26
26
16
32
1.96
66168--66281
23
5.0
23
80
2
122
35
24
21
18
1.96
66371--66490
45
2.7
45
82
6
136
39
15
5
40
1.70
67018--67074
29
2.0
29
96
0
105
28
17
12
42
1.85
67837--68209
135
2.8
135
84
4
486
30
20
18
31
1.96
68397--68432
14
2.5
15
90
9
65
38
0
0
61
0.96
68399--68433
17
2.1
17
88
0
52
34
0
0
65
0.93
70322--70368
14
3.6
13
80
11
51
34
2
4
59
1.29
70327--70355
14
2.1
14
100
0
58
34
0
0
65
0.93
72093--72687
6
99.5
6
98
0
1167
32
0
16
50
1.48
74104--74190
45
1.9
45
90
2
138
40
9
16
34
1.80
74978--75106
67
1.9
68
96
1
242
44
9
4
41
1.57
77264--77294
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!