Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004980.1 Hibiscus syriacus cultivar Beakdansim tig00011178_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108110
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:893 original size:27 final size:30
Alignment explanation
Indices: 863--922 Score: 81
Period size: 27 Copynumber: 2.1 Consensus size: 30
853 ATATTTAGTA
* *
863 ATTTTTTT-AATTTTTAT-CTTTAATT-TT
1 ATTTTTTTAAAATTTAATACTTTAATTATT
890 ATTTTTTTAAAATTTAATACTTTAATTATT
1 ATTTTTTTAAAATTTAATACTTTAATTATT
920 ATT
1 ATT
923 CTTTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.29
28 7 0.25
29 8 0.29
30 5 0.18
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (30 bp):
ATTTTTTTAAAATTTAATACTTTAATTATT
Found at i:904 original size:29 final size:28
Alignment explanation
Indices: 863--922 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
853 ATATTTAGTA
*
863 ATTTTTTTAATTT-TTATCTTTAATT-TT
1 ATTTTTTTAATTTAATA-CTTTAATTATT
890 ATTTTTTTAAAATTTAATACTTTAATTATT
1 ATTTTTTT--AATTTAATACTTTAATTATT
920 ATT
1 ATT
923 CTTTATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 8 0.29
29 13 0.46
30 7 0.25
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (28 bp):
ATTTTTTTAATTTAATACTTTAATTATT
Found at i:2346 original size:15 final size:15
Alignment explanation
Indices: 2328--2362 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
2318 TAAAAATGTA
2328 AAATTTAAATTACAG
1 AAATTTAAATTACAG
* *
2343 AAATTTAGATTACTG
1 AAATTTAAATTACAG
2358 AAATT
1 AAATT
2363 AGGACTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.37
Consensus pattern (15 bp):
AAATTTAAATTACAG
Found at i:6739 original size:32 final size:32
Alignment explanation
Indices: 6713--6775 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
6703 CGGGTTTGGT
6713 TTTTTAAGTGTGATATTCGGATCGGGTCGGGG
1 TTTTTAAGTGTGATATTCGGATCGGGTCGGGG
* *
6745 TTTTTAAGTGTGATATTCGGGTCTGGTCGGG
1 TTTTTAAGTGTGATATTCGGATCGGGTCGGG
6776 TTCGGGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.14, C:0.10, G:0.37, T:0.40
Consensus pattern (32 bp):
TTTTTAAGTGTGATATTCGGATCGGGTCGGGG
Found at i:6741 original size:37 final size:35
Alignment explanation
Indices: 6699--6777 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 35
6689 TATTTTGTTT
6699 GGGTCGGGTTTGGTTTTTTAAGTGTGATATTCGGATC
1 GGGTCGGG-TTGG-TTTTTAAGTGTGATATTCGGATC
*
6736 GGGTC-GG--GGTTTTTAAGTGTGATATTCGGGTC
1 GGGTCGGGTTGGTTTTTAAGTGTGATATTCGGATC
*
6768 TGGTCGGGTT
1 GGGTCGGGTT
6778 CGGGTTTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
32 26 0.70
33 4 0.11
36 2 0.05
37 5 0.14
ACGTcount: A:0.11, C:0.09, G:0.39, T:0.41
Consensus pattern (35 bp):
GGGTCGGGTTGGTTTTTAAGTGTGATATTCGGATC
Found at i:8180 original size:38 final size:38
Alignment explanation
Indices: 8145--8216 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
8135 TACAAATTGT
8145 AAAATATTTATAT-ATTTTCTTTAAAAAAATTAAATTC
1 AAAATATTTATATAATTTTCTTTAAAAAAATTAAATTC
* * * *
8182 ATAATATTTATATAATTTTTTTTTACAAAATTAAA
1 AAAATATTTATATAATTTTCTTTAAAAAAATTAAA
8217 AATATAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 12 0.40
38 18 0.60
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (38 bp):
AAAATATTTATATAATTTTCTTTAAAAAAATTAAATTC
Found at i:9362 original size:19 final size:20
Alignment explanation
Indices: 9325--9362 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
9315 GGAAAAGAAT
9325 ATTTCCGAATGAGAGAAAAC
1 ATTTCCGAATGAGAGAAAAC
9345 ATTTCC-AA-GAGAAGAAAA
1 ATTTCCGAATGAG-AGAAAA
9363 GTTCTTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 8 0.47
20 6 0.35
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (20 bp):
ATTTCCGAATGAGAGAAAAC
Found at i:12992 original size:58 final size:57
Alignment explanation
Indices: 12878--12993 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 57
12868 TTCAATACTT
*** * * * **
12878 TCAAGAAATAAATCCAACAATTTTTTTATTTTTACAAGATAGAATCATACTTGATTC
1 TCAAGAAATAAATCCAACAATTTAAATATTTCTACAAAACAGAATCATACAAGATTC
* *
12935 TCAAGAAATAAATTCAACGATTTAAATATCTTCTACAAAACAGAATCATACAAGATTC
1 TCAAGAAATAAATCCAACAATTTAAATAT-TTCTACAAAACAGAATCATACAAGATTC
12993 T
1 T
12994 ATGAAAATAA
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.34
Consensus pattern (57 bp):
TCAAGAAATAAATCCAACAATTTAAATATTTCTACAAAACAGAATCATACAAGATTC
Found at i:13096 original size:58 final size:56
Alignment explanation
Indices: 12893--13107 Score: 139
Period size: 58 Copynumber: 3.7 Consensus size: 56
12883 AAATAAATCC
* * * ** *
12893 AACAATTTTTTTATTTTTACAAGATAGAATCATACTTGATTCTCAAG-AAAT-AAATT
1 AACAATTTATTTCTTTTTACAA-ACAGAATCATACAAGATTC-CATGAAAATAAAATT
* * * *
12949 CAACGATTTAAATATC-TTCTACAAAACAGAATCATACAAGATTCTATGAAAATAAAATT
1 -AACAATTT--ATTTCTTTTTAC-AAACAGAATCATACAAGATTCCATGAAAATAAAATT
* * ** * * *
13008 AATAATTTATTTCTTTTTACAGGATGGAATCGTTCAAGATTTCCATGAAAATAAATTT
1 AACAATTTATTTCTTTTTACA-AACAGAATCATACAAGA-TTCCATGAAAATAAAATT
* ** *
13066 GACGTTTTATTTCTTTTTACAAACCAGAATCATATAAGATTC
1 AACAATTTATTTCTTTTTACAAA-CAGAATCATACAAGATTC
13108 ATAGGAAAAT
Statistics
Matches: 118, Mismatches: 31, Indels: 18
0.71 0.19 0.11
Matches are distributed among these distances:
56 5 0.04
57 30 0.25
58 74 0.63
59 9 0.08
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (56 bp):
AACAATTTATTTCTTTTTACAAACAGAATCATACAAGATTCCATGAAAATAAAATT
Found at i:17325 original size:2 final size:2
Alignment explanation
Indices: 17318--17363 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
17308 ACTAAAGTAA
17318 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17360 AT AT
1 AT AT
17364 TAGGGTATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17556 original size:29 final size:28
Alignment explanation
Indices: 17489--17568 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 28
17479 TGACTAAAAT
*
17489 AAAA-TAAAAATAAAATAATAATTAAAGTAC
1 AAAATTAAAAAT-AAATAA-AA-TAAAGGAC
17519 AAAATTAAACATATAAA-AAAATAAAGGAC
1 AAAATTAAA-A-ATAAATAAAATAAAGGAC
17548 AATAA-TAAAAATAAATAAAAT
1 AA-AATTAAAAATAAATAAAAT
17569 TATAATTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
27 5 0.11
28 6 0.14
29 13 0.30
30 8 0.18
31 6 0.14
32 4 0.09
33 2 0.05
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (28 bp):
AAAATTAAAAATAAATAAAATAAAGGAC
Found at i:17680 original size:22 final size:21
Alignment explanation
Indices: 17652--17694 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
17642 AATTAATGAC
17652 TAACATGAAATAAAATAGAAAT
1 TAACATGAAA-AAAATAGAAAT
* *
17674 TAACATGCAAAAAATTGAAAT
1 TAACATGAAAAAAATAGAAAT
17695 AAAATAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.60, C:0.07, G:0.09, T:0.23
Consensus pattern (21 bp):
TAACATGAAAAAAATAGAAAT
Found at i:19220 original size:36 final size:35
Alignment explanation
Indices: 19180--19371 Score: 129
Period size: 36 Copynumber: 5.3 Consensus size: 35
19170 GTGAAACTGT
*
19180 CTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAAG
1 CTCAAGTGAGACAAAT-TTGTTTTAAGAAAAACAAG
* ** ** *
19216 CTCAAGTGAGATAAATTGATGTTTCGAGTGAAAC-TG
1 CTCAAGTGAGACAAATT--TGTTTTAAGAAAAACAAG
* *
19252 TCTCAAGAGAGACAAATCTTGTTTTAAGAAAAACAAT
1 -CTCAAGTGAGACAAAT-TTGTTTTAAGAAAAACAAG
* * ** *
19289 CTCAAGTGAGATAAATTGATGTTTTGAGTGAAAC-TG
1 CTCAAGTGAGACAAATT--TGTTTTAAGAAAAACAAG
* * *
19325 TCTCAAGCGAGAGAAAGTTTGTTTTAAGAAAAA-AAT
1 -CTCAAGTGAGACAAA-TTTGTTTTAAGAAAAACAAG
19361 CTCAAGTGAGA
1 CTCAAGTGAGA
19372 TAAGTTGCTA
Statistics
Matches: 116, Mismatches: 30, Indels: 21
0.69 0.18 0.13
Matches are distributed among these distances:
35 12 0.10
36 51 0.44
37 50 0.43
38 3 0.03
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (35 bp):
CTCAAGTGAGACAAATTTGTTTTAAGAAAAACAAG
Found at i:19232 original size:73 final size:72
Alignment explanation
Indices: 19164--19547 Score: 475
Period size: 73 Copynumber: 5.3 Consensus size: 72
19154 GAAATTTTTG
* *
19164 TTTCTAGTGAAACTGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAAGCTCAAGTGAGATA
1 TTTCAAGTGAAACTGTCTCAAGCGAGACAAAT-TTGTTTTAAGAAAAACAATCTCAAGTGAGATA
* *
19229 AATTGATG
65 AATTGCTA
* *
19237 TTTCGAGTGAAACTGTCTCAAGAGAGACAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATA
1 TTTCAAGTGAAACTGTCTCAAGCGAGACAAAT-TTGTTTTAAGAAAAACAATCTCAAGTGAGATA
* *
19302 AATTGATG
65 AATTGCTA
** *
19310 TTTTGAGTGAAACTGTCTCAAGCGAGAGAAAGTTTGTTTTAAGAAAAA-AATCTCAAGTGAGATA
1 TTTCAAGTGAAACTGTCTCAAGCGAGACAAA-TTTGTTTTAAGAAAAACAATCTCAAGTGAGATA
*
19374 AGTTGCTA
65 AATTGCTA
* *
19382 TTTCAAGTGAAACTTTTCTCAAGCGAGA-AAGTTTGTTTTAAGAAAAACAAATCTCAAGTGAGAT
1 TTTCAAGTGAAAC-TGTCTCAAGCGAGACAAATTTGTTTTAAGAAAAAC-AATCTCAAGTGAGAT
* *
19446 TATTTGCTA
64 AAATTGCTA
* * * * * *
19455 ATTCAAGTGAAAATTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAATAATATCAAGTGAGATA
1 TTTCAAGTGAAACTGTCTCAAGCGAGACAAA-TTTGTTTTAAGAAAAACAATCTCAAGTGAGATA
*
19520 AATTTCTA
65 AATTGCTA
* *
19528 TTTCGAGTGAAACTTTCTCA
1 TTTCAAGTGAAACTGTCTCA
19548 GGAGAGACGT
Statistics
Matches: 279, Mismatches: 26, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
71 16 0.06
72 48 0.17
73 198 0.71
74 17 0.06
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (72 bp):
TTTCAAGTGAAACTGTCTCAAGCGAGACAAATTTGTTTTAAGAAAAACAATCTCAAGTGAGATAA
ATTGCTA
Found at i:19257 original size:37 final size:37
Alignment explanation
Indices: 19169--19336 Score: 139
Period size: 37 Copynumber: 4.6 Consensus size: 37
19159 TTTTGTTTCT
* * *
19169 AGTGAAACTGTCTCAAGCGAGACAAATCT--TGTTTTA
1 AGTGAAACTGTCTCAAGTGAGATAAAT-TGATGTTTTG
** * *
19205 AGAAAAACAAG-CTCAAGTGAGATAAATTGATGTTTCG
1 AGTGAAAC-TGTCTCAAGTGAGATAAATTGATGTTTTG
* * *
19242 AGTGAAACTGTCTCAAGAGAGACAAATCT--TGTTTTA
1 AGTGAAACTGTCTCAAGTGAGATAAAT-TGATGTTTTG
** **
19278 AGAAAAACAATCTCAAGTGAGATAAATTGATGTTTTG
1 AGTGAAACTGTCTCAAGTGAGATAAATTGATGTTTTG
*
19315 AGTGAAACTGTCTCAAGCGAGA
1 AGTGAAACTGTCTCAAGTGAGA
19337 GAAAGTTTGT
Statistics
Matches: 99, Mismatches: 26, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
35 2 0.02
36 47 0.47
37 49 0.49
38 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (37 bp):
AGTGAAACTGTCTCAAGTGAGATAAATTGATGTTTTG
Found at i:19465 original size:145 final size:146
Alignment explanation
Indices: 19169--19555 Score: 512
Period size: 145 Copynumber: 2.7 Consensus size: 146
19159 TTTTGTTTCT
* *
19169 AGTGAAACTGTCTCAAGCGAGACAAA-TCTTGTTTTAAGAAAAACAAGCTCAAGTGAGATAAATT
1 AGTGAAACTGTCTCAAGCGAGAAAAAGT-TTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
* * *
19233 GATGTTTCGAGTGAAACTGTCTCAAGAGAGACAAATCTTGTTTTAAGAAAAACAATCTCAAGTGA
65 GCTATTTCGAGTGAAACTTTCTCAAGAGAGACAAATCTTGTTTTAAGAAAAACAATCTCAAGTGA
** **
19298 GATAAATTGATGTTTTG
130 GATAAATTGATAATTCA
* *
19315 AGTGAAACTGTCTCAAGCGAGAGAAAGTTTGTTTTAAGAAAAA-AATCTCAAGTGAGATAAGTTG
1 AGTGAAACTGTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTG
* * *
19379 CTATTTCAAGTGAAACTTTTCTCAAGCGAGA-AAGT-TTGTTTTAAGAAAAACAAATCTCAAGTG
66 CTATTTCGAGTGAAAC-TTTCTCAAGAGAGACAAATCTTGTTTTAAGAAAAAC-AATCTCAAGTG
* * *
19442 AGATTATTTGCTAATTCA
129 AGATAAATTGATAATTCA
* * * * *
19460 AGTGAAAATTTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAATAATATCAAGTGAGATAAATTT
1 AGTGAAACTGTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTG
*
19525 CTATTTCGAGTGAAACTTTCTCAGGAGAGAC
66 CTATTTCGAGTGAAACTTTCTCAAGAGAGAC
19556 GTCGCTGATT
Statistics
Matches: 211, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
144 16 0.08
145 109 0.52
146 85 0.40
147 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (146 bp):
AGTGAAACTGTCTCAAGCGAGAAAAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTG
CTATTTCGAGTGAAACTTTCTCAAGAGAGACAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAG
ATAAATTGATAATTCA
Found at i:19669 original size:6 final size:6
Alignment explanation
Indices: 19655--20303 Score: 1275
Period size: 6 Copynumber: 108.5 Consensus size: 6
19645 AAAATCATGG
*
19655 ATGTAT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19703 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19751 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19799 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19847 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19895 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19943 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
19991 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
20039 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT A--TGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
20085 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
20133 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
20181 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
20229 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
1 ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT ATGTGT
20277 ATGTGT ATGTGT ATGTGT ATGTGT ATG
1 ATGTGT ATGTGT ATGTGT ATGTGT ATG
20304 CCGATGCATG
Statistics
Matches: 640, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
4 4 0.01
6 636 0.99
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (6 bp):
ATGTGT
Found at i:22330 original size:89 final size:89
Alignment explanation
Indices: 22217--22388 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
22207 TAATAGTATA
* * * * *
22217 ATAGGCTAGCTGAATATTATCCATAAAAT-CGGGGCT-ATTAACCGACTGTTTTAGGGGGACAAC
1 ATAGGCTAGCTGAACATTATCCAT-AAATCCAGAG-TGATTAACCAACTGCTTTAGGGGGACAAC
22280 TCAAACTTTATTGTATATATAATAAT
64 TCAAACTTTATTGTATATATAATAAT
* * **
22306 ATAGGCTAGTTGAACATTATCCATAAATCCAGAGTGATTAACCAATTGCTTTAGGGGGTTAACTC
1 ATAGGCTAGCTGAACATTATCCATAAATCCAGAGTGATTAACCAACTGCTTTAGGGGGACAACTC
*
22371 AATCTTTATTGTATATAT
66 AAACTTTATTGTATATAT
22389 CATGAGTATA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
88 5 0.07
89 66 0.93
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (89 bp):
ATAGGCTAGCTGAACATTATCCATAAATCCAGAGTGATTAACCAACTGCTTTAGGGGGACAACTC
AAACTTTATTGTATATATAATAAT
Found at i:24275 original size:76 final size:77
Alignment explanation
Indices: 24147--24355 Score: 282
Period size: 76 Copynumber: 2.8 Consensus size: 77
24137 CCGTTGTACA
* * *
24147 AGGGGGGAATCGGTACCCCCT-TGGGGGG-ATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
**
24210 -AAAAACTGTTT
66 CAAAAACCATTT
* *
24221 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
*
24286 CCAAAACCATTT
66 CAAAAACCATTT
* * *
24298 AGGGGGG-ATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCTGAGCAATCTGTAATT
1 AGGGGGGAATCGGTTCCTCCTAT-GGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATT
24356 TTTGGCTTTG
Statistics
Matches: 119, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
74 19 0.16
75 7 0.06
76 47 0.39
77 46 0.39
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (77 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
CAAAAACCATTT
Found at i:26946 original size:21 final size:21
Alignment explanation
Indices: 26920--26959 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26910 CAGAACCCCA
*
26920 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
26941 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
26960 TCAAATGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:30853 original size:22 final size:21
Alignment explanation
Indices: 30811--30850 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
30801 GAGTTTGTTT
*
30811 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
30832 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
30851 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:32902 original size:76 final size:77
Alignment explanation
Indices: 32774--32982 Score: 282
Period size: 76 Copynumber: 2.8 Consensus size: 77
32764 CCGTTGTACA
* * *
32774 AGGGGGGAATCGGTACCCCCT-TGGGGGG-ATCGGTTCCCTCCGAGCATACTGGAATTCTCGGAG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
**
32837 -AAAAACTGTTT
66 CAAAAACCATTT
* *
32848 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAAATCTCGGGG
1 AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
*
32913 CCAAAACCATTT
66 CAAAAACCATTT
* * *
32925 AGGGGGG-ATCGGTTCCTCCTATGGGGGGGAATCGGTTCCCTCTGAGCAATCTGTAATT
1 AGGGGGGAATCGGTTCCTCCTAT-GGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATT
32983 TTTGGCTTTG
Statistics
Matches: 119, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
74 19 0.16
75 7 0.06
76 47 0.39
77 46 0.39
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (77 bp):
AGGGGGGAATCGGTTCCTCCTATGGGGGGAATCGGTTCCCTCCGAGCATTCTGGAATTCTCGGAG
CAAAAACCATTT
Found at i:35533 original size:2 final size:2
Alignment explanation
Indices: 35526--35569 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
35516 ACTAAAGTAA
35526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35568 AT
1 AT
35570 TAGGGTATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35898 original size:22 final size:20
Alignment explanation
Indices: 35870--35911 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
35860 AATTAATGAC
35870 TAACATGAAATAAAATAGAAAT
1 TAACATGAAA-AAAAT-GAAAT
*
35892 TAACATGCAAAAAATGAAAT
1 TAACATGAAAAAAATGAAAT
35912 GAAATAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (20 bp):
TAACATGAAAAAAATGAAAT
Found at i:36630 original size:20 final size:20
Alignment explanation
Indices: 36600--36648 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
36590 AAAAATAAAA
*
36600 TAAAGAATAAAATACCAAACTG
1 TAAA-AATAAAAGACCAAA-TG
36622 -AAAAAT-AAAGACCAAATG
1 TAAAAATAAAAGACCAAATG
36640 TAAAAATAA
1 TAAAAATAA
36649 CATTTGCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 2 0.08
19 15 0.62
20 4 0.17
21 3 0.12
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.16
Consensus pattern (20 bp):
TAAAAATAAAAGACCAAATG
Found at i:39320 original size:41 final size:41
Alignment explanation
Indices: 39243--39322 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
39233 AAGCAACCGT
*
39243 AGGGGTGTCAGAAGCACCCAGGGGCGGCGGTAGGGCACTTC
1 AGGGGTGTCAGAAGCACCCAAGGGCGGCGGTAGGGCACTTC
* *
39284 AGGGGCTG-CAGAAGACATCCAAGGGCGGCGG-CGGGCACT
1 AGGGG-TGTCAGAAG-CACCCAAGGGCGGCGGTAGGGCACT
39323 GTTAGTGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 18 0.53
42 16 0.47
ACGTcount: A:0.21, C:0.25, G:0.44, T:0.10
Consensus pattern (41 bp):
AGGGGTGTCAGAAGCACCCAAGGGCGGCGGTAGGGCACTTC
Found at i:42366 original size:30 final size:30
Alignment explanation
Indices: 42325--42391 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
42315 TCCACCAATG
* * *
42325 TGTGCTCCACCATCACCTGATCCATCAACA
1 TGTGCTCCACCAGCACATAATCCATCAACA
* *
42355 TGTGCTTCACCAGCGCATAATCCATCAACA
1 TGTGCTCCACCAGCACATAATCCATCAACA
42385 TGTGCTC
1 TGTGCTC
42392 TAATGGCACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.36, G:0.13, T:0.25
Consensus pattern (30 bp):
TGTGCTCCACCAGCACATAATCCATCAACA
Found at i:42839 original size:45 final size:45
Alignment explanation
Indices: 42785--42888 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
42775 ACCACACCAA
* * *
42785 ACCGTGACAATGCGGATAGGATCACGTCCTTGGGAGCAATGGCTG
1 ACCGTGACAATGCGGATAGGACCACGTACTTGGGAGCAATGGCGG
* * * *
42830 ACTGTGACAATGCGTATGGGACCACGTACTTTGGAGCAATGGCGG
1 ACCGTGACAATGCGGATAGGACCACGTACTTGGGAGCAATGGCGG
42875 ACCGTGACAATGCG
1 ACCGTGACAATGCG
42889 CATTGGGCTG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.20
Consensus pattern (45 bp):
ACCGTGACAATGCGGATAGGACCACGTACTTGGGAGCAATGGCGG
Found at i:46320 original size:186 final size:184
Alignment explanation
Indices: 45958--46347 Score: 615
Period size: 186 Copynumber: 2.1 Consensus size: 184
45948 TTTTCTAATT
* * * * *
45958 TATATAA-AAATTAAATGTTTTTTAATTCAAAAAAAGTTTATAATTAATTTAAATAATATATAAT
1 TATATAATATATTTAATATTTTTTAATTAAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
46022 TATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
66 TATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
* * *
46087 GGATCTTAAATTATTAATTGGGTTTTAAATGGTTTGGGCTTAGCCCATATGTTA
131 AGATCTTAAATTATTAATTGAGTTTTAAATGGTTTGAGCTTAGCCCATATGTTA
46141 TATATAATATATTTAATATTTTTTAATTAAAAAAAATAGTTTACAATTAATTTAAATAATATATA
1 TATATAATATATTTAATATTTTTTAATT-AAAAAAA-AGTTTACAATTAATTTAAATAATATATA
* * * *
46206 ATTATAAAATAAAAATTTTATAT-AATTTTTTAAATTAATTAATATTGATTTACGTTTAAAATTT
64 ATTATAAAATAAAAATTTCAGATAAATTTTTT-AATTAATTAATATTGATTTAAGTTTAAAAGTT
46270 ATTAGATCTTAAATTATTAATTGAGTTTTAAATGGTTTGAG-TTGAGCCCATATGTTA
128 ATTAGATCTTAAATTATTAATTGAGTTTTAAATGGTTTGAGCTT-AGCCCATATGTTA
46327 TATATAATATATTTAATATTT
1 TATATAATATATTTAATATTT
46348 AAAATTTAAT
Statistics
Matches: 190, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
183 7 0.04
184 17 0.09
185 16 0.08
186 150 0.79
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (184 bp):
TATATAATATATTTAATATTTTTTAATTAAAAAAAAGTTTACAATTAATTTAAATAATATATAAT
TATAAAATAAAAATTTCAGATAAATTTTTTAATTAATTAATATTGATTTAAGTTTAAAAGTTATT
AGATCTTAAATTATTAATTGAGTTTTAAATGGTTTGAGCTTAGCCCATATGTTA
Found at i:48691 original size:22 final size:22
Alignment explanation
Indices: 48640--48724 Score: 102
Period size: 22 Copynumber: 3.9 Consensus size: 22
48630 ATGTGAAATT
* *
48640 TGTCCTGAATGACCTCATGTATA
1 TGTCCCGAAGGACCT-ATGTATA
*
48663 --TCCCGAAGGATCTATGTATA
1 TGTCCCGAAGGACCTATGTATA
48683 TGTCCCGAAGGACCTATGTATA
1 TGTCCCGAAGGACCTATGTATA
* *
48705 TGTCTCGAATGACCTATGTA
1 TGTCCCGAAGGACCTATGTA
48725 ACCCTCGAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
20 7 0.13
21 10 0.19
22 37 0.69
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (22 bp):
TGTCCCGAAGGACCTATGTATA
Found at i:51101 original size:17 final size:18
Alignment explanation
Indices: 51064--51101 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51054 ACCTATTTTG
*
51064 GTATCGATACTCACTCCA
1 GTATCGATACTCACGCCA
*
51082 GTATTGATACTCA-GCCA
1 GTATCGATACTCACGCCA
51099 GTA
1 GTA
51102 GTATCATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (18 bp):
GTATCGATACTCACGCCA
Found at i:51729 original size:32 final size:33
Alignment explanation
Indices: 51688--51762 Score: 95
Period size: 32 Copynumber: 2.3 Consensus size: 33
51678 TTTTAGTTGG
51688 ACTGAAAGCAAAC-TGAA-CTAAAATCAA-CCGAA
1 ACTGAAAGCAAACTTGAATC-AAAATCAACCCG-A
*
51720 ACTGAAAGC-AACTTGAATCAAAATTAACCCGA
1 ACTGAAAGCAAACTTGAATCAAAATCAACCCGA
51752 ACTGAAAGCAA
1 ACTGAAAGCAA
51763 CACAAACCGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
31 3 0.08
32 30 0.79
33 5 0.13
ACGTcount: A:0.51, C:0.21, G:0.13, T:0.15
Consensus pattern (33 bp):
ACTGAAAGCAAACTTGAATCAAAATCAACCCGA
Found at i:53223 original size:5 final size:5
Alignment explanation
Indices: 53208--53243 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
53198 TAAACAATAT
*
53208 ATAAA AGAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
53244 ATTAGAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (5 bp):
ATAAA
Found at i:53253 original size:20 final size:19
Alignment explanation
Indices: 53213--53283 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 19
53203 AATATATAAA
53213 AGAAAATAAAAT-AAAA-T
1 AGAAAATAAAATAAAAATT
53230 --AAAATAAAATAAAAATT
1 AGAAAATAAAATAAAAATT
* *
53247 AGAAAAAAAAATTAAAGATT
1 AGAAAATAAAA-TAAAAATT
* *
53267 TGTAAATAAAATAAAAA
1 AGAAAATAAAATAAAAA
53284 CAAATGCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
15 10 0.23
16 4 0.09
17 1 0.02
19 13 0.30
20 15 0.35
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (19 bp):
AGAAAATAAAATAAAAATT
Found at i:57141 original size:2 final size:2
Alignment explanation
Indices: 57134--57163 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
57124 AAAACTTTTA
57134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57164 TTGAGAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57374 original size:19 final size:19
Alignment explanation
Indices: 57329--57377 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
57319 GCGATTTTGA
*
57329 AAAATGTATTGCGATAGTT
1 AAAATGTGTTGCGATAGTT
57348 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTT
*
57367 ACAATGTGTTG
1 AAAATGTGTTG
57378 TGAGAGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (19 bp):
AAAATGTGTTGCGATAGTT
Found at i:57385 original size:19 final size:19
Alignment explanation
Indices: 57329--57390 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
57319 GCGATTTTGA
* *
57329 AAAATGTATTGCGATAGTT
1 AAAATGTGTTGCGAGAGTT
*
57348 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGAGAGTT
* *
57367 ACAATGTGTTGTGAGAGTTT
1 AAAATGTGTTGCGAGAG-TT
57387 AAAA
1 AAAA
57391 AACGTGTTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 32 0.86
20 5 0.14
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (19 bp):
AAAATGTGTTGCGAGAGTT
Found at i:57727 original size:6 final size:6
Alignment explanation
Indices: 57716--57747 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
57706 GTCCCGTCCC
57716 GTCGTG GTCGTG GTCGTG GTCGTG GTCGTG GT
1 GTCGTG GTCGTG GTCGTG GTCGTG GTCGTG GT
57748 ATTTTAACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.16, G:0.50, T:0.34
Consensus pattern (6 bp):
GTCGTG
Found at i:60584 original size:29 final size:29
Alignment explanation
Indices: 60551--60639 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
60541 AATCAATAAA
60551 CATAATTTTAAAGCCAAGCTTTATCATGG
1 CATAATTTTAAAGCCAAGCTTTATCATGG
*
60580 CATAATTTTAAAGTCAAGCTTTATCATGG
1 CATAATTTTAAAGCCAAGCTTTATCATGG
60609 CATAATTTTAAAGCCAAGCTTTATCATGG
1 CATAATTTTAAAGCCAAGCTTTATCATGG
60638 CA
1 CA
60640 CTTTGAAGGA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (29 bp):
CATAATTTTAAAGCCAAGCTTTATCATGG
Found at i:65121 original size:36 final size:35
Alignment explanation
Indices: 65077--65223 Score: 231
Period size: 36 Copynumber: 4.1 Consensus size: 35
65067 CATCCTTCCA
*
65077 TTCGACTTGAGTCGGAAGTGCCGATGCTTCTTTCTG
1 TTCGACTTGAATCGGAAGTGCCGATGCTTCTTTC-G
*
65113 TTCGACTTGAATCGGAAGTGCCGATGCTTCATTGCG
1 TTCGACTTGAATCGGAAGTGCCGATGCTTC-TTTCG
*
65149 TTCGACTTGAATCGGAAGTGCCGATGCTTCCTTCCG
1 TTCGACTTGAATCGGAAGTGCCGATGCTT-CTTTCG
65185 TTCGACTTGAATCGGAAGTGCCGATGCTTTCTTTCG
1 TTCGACTTGAATCGGAAGTGCCGATGC-TTCTTTCG
65221 TTC
1 TTC
65224 TTCTTATTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
36 98 0.94
37 6 0.06
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (35 bp):
TTCGACTTGAATCGGAAGTGCCGATGCTTCTTTCG
Found at i:67551 original size:15 final size:16
Alignment explanation
Indices: 67528--67586 Score: 58
Period size: 15 Copynumber: 4.0 Consensus size: 16
67518 AATACATAAC
67528 AAAAA-TAAA-TAAAT
1 AAAAATTAAATTAAAT
67542 AAAAATT-AA--AAAT
1 AAAAATTAAATTAAAT
67555 AAAAAATTAAATTAAAT
1 -AAAAATTAAATTAAAT
*
67572 -TAAATTAAATTAAAT
1 AAAAATTAAATTAAAT
67587 TAAAGAAATG
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
13 4 0.10
14 14 0.36
15 17 0.44
17 4 0.10
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATTAAATTAAAT
Found at i:67552 original size:21 final size:21
Alignment explanation
Indices: 67506--67570 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
67496 AAAATCAAAG
* *
67506 AAAAATAAAATAAATACATAA-C
1 AAAAAT-AAATAAATA-AAAATT
67528 AAAAATAAATAAATAAAAATT
1 AAAAATAAATAAATAAAAATT
*
67549 AAAAATAAA-AAAT-TAAATT
1 AAAAATAAATAAATAAAAATT
67568 AAA
1 AAA
67571 TTAAATTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
19 8 0.21
20 7 0.18
21 18 0.46
22 6 0.15
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAATAAATAAATAAAAATT
Found at i:67600 original size:5 final size:5
Alignment explanation
Indices: 67558--67590 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
67548 TAAAAATAAA
67558 AAATT AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAATT AAA
67591 GAAATGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:71310 original size:21 final size:21
Alignment explanation
Indices: 71286--71346 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
71276 TGTTGTGTAT
*
71286 TACTGATCTGTTGTTCCCTGG
1 TACTGGTCTGTTGTTCCCTGG
*
71307 TACTGGTCTGTTGTTCCCTGT
1 TACTGGTCTGTTGTTCCCTGG
*
71328 TATTGGTCTGTTGTTCCCT
1 TACTGGTCTGTTGTTCCCT
71347 TTCTCCTTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.07, C:0.23, G:0.23, T:0.48
Consensus pattern (21 bp):
TACTGGTCTGTTGTTCCCTGG
Found at i:71956 original size:3 final size:3
Alignment explanation
Indices: 71933--71973 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
71923 CCCAAATTCT
71933 ATA ATA A-A ATA CA-A ATAA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT
71974 GACATGAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 3 0.09
3 27 0.79
4 4 0.12
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:72730 original size:45 final size:44
Alignment explanation
Indices: 72664--72831 Score: 165
Period size: 45 Copynumber: 3.8 Consensus size: 44
72654 AGACCAAATA
*
72664 TGAAAGATTGACTCCTCTTCACAAGAAATTCAATAAGGACAACAC
1 TGAAAGATTGACTCCTCTTCACAAGAAAGTCAATAA-GACAACAC
* * * * *
72709 TAAAAGATTGACTCATCTTCACGAGAAAGTCAAGGAAGACAACAT
1 TGAAAGATTGACTCCTCTTCACAAGAAAGTCAA-TAAGACAACAC
* * * * * *
72754 TGAAATAATGACTCCTCTGCACTAGAAAGTCAATAATAACAATAC
1 TGAAAGATTGACTCCTCTTCACAAGAAAGTCAATAA-GACAACAC
* * * *
72799 TGAGAGATTGACTTCTCTTCACGAGGAAGTCAA
1 TGAAAGATTGACTCCTCTTCACAAGAAAGTCAA
72832 GAATAACAAA
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
44 2 0.02
45 94 0.96
46 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (44 bp):
TGAAAGATTGACTCCTCTTCACAAGAAAGTCAATAAGACAACAC
Found at i:72818 original size:90 final size:91
Alignment explanation
Indices: 72650--72832 Score: 228
Period size: 90 Copynumber: 2.0 Consensus size: 91
72640 GTTACTCTTC
* * * *
72650 AGGAAGACCAAATATGAAAGATTGACTCCTCTTCACAAGAAATTCAATAAGGACAACACTAAAAG
1 AGGAAGACCAAATATGAAAGAATGACTCCTCTGCACAAGAAAGTCAATAAGAACAACACTAAAAG
72715 ATTGACTCATCTTCACGAGAAAGTCA
66 ATTGACTCATCTTCACGAGAAAGTCA
* * * * * *
72741 AGGAAGA-CAACAT-TGAAATAATGACTCCTCTGCACTAGAAAGTCAATAATAACAATACTGAGA
1 AGGAAGACCAA-ATATGAAAGAATGACTCCTCTGCACAAGAAAGTCAATAAGAACAACACTAAAA
*
72804 GATTGACTTC-TCTTCACGAGGAAGTCA
65 GATTGAC-TCATCTTCACGAGAAAGTCA
72831 AG
1 AG
72833 AATAACAAAG
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
90 68 0.86
91 11 0.14
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (91 bp):
AGGAAGACCAAATATGAAAGAATGACTCCTCTGCACAAGAAAGTCAATAAGAACAACACTAAAAG
ATTGACTCATCTTCACGAGAAAGTCA
Found at i:72854 original size:38 final size:38
Alignment explanation
Indices: 72803--74107 Score: 1599
Period size: 38 Copynumber: 34.2 Consensus size: 38
72793 CAATACTGAG
72803 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
** *
72841 AGATTGACTTCTCTTCATAAGGAAGTAAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
*
72879 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAAAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
72917 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
72955 A-ACATGACTTCTCTTCATGAGGAAGTCAAGAATAACAA
1 AGA-TTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
72993 AGAATGACTTCTCTTCACGAGGAAGTCAAGAATAAAAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* * * *
73031 ATATTGACTTCTCTTCACGAGGAATTAAAAAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* * *
73069 AGACTGACTTCTCTTAACGAGAAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
** *
73107 AGACCGATTTCTCTTCACGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* * *
73145 AGATGGTA-TTCTCTTCATGAGAAAGTCAAGAATAACAA
1 AGATTG-ACTTCTCTTCACGAGGAAGTCAAGAATAACAA
*
73183 AGATTGACTTCTCTTCACGAGGAAGTCAATAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* * *
73221 ATATTGATTTCTCTTCATGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73259 AGATTGACTTCTCTTCTCGAGGAAGTTAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
*
73297 AGATTGACTTCTC-T--CGAGGAAGTTAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73332 AGATTGACTTCTCTTCATGAGAAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73370 AGCTTGAATTCTCTTCACGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* **
73408 AGATTAACTTCTCTTCATTAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
** *
73446 AGA-TGACTTCTCTGAACGAGGAAGTAAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73483 AGATTGTA-TTCTCTTCCCAAGGAAGTCAAGAATAACAA
1 AGATTG-ACTTCTCTTCACGAGGAAGTCAAGAATAACAA
*
73521 CA-ATTGACTTCTCTTCACGAGGAAGTCAAGAATAATAA
1 -AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
** * *
73559 AGGCTGACTTCTCTTCTCGAGGAAGTTAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73597 AGATTGAC-TCATCTTCACAAGGAAGTTAAGAATAACAA
1 AGATTGACTTC-TCTTCACGAGGAAGTCAAGAATAACAA
* * *
73635 AGATTGACTTTTCTTCTCAAGGAAGTCAATAATAAGTCAAGAATAACAA
1 AGATTGACTTCTC-T-TC-ACG-AG-------GAAGTCAAGAATAACAA
* * *
73684 AGATTGACTCCTCTTCACGAGGAAGTCAGGAATAAAAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73722 AGATTGACTTCACTTCACGAGAAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
** *
73760 AGATTGACTTCTCTTCACGAATAAGTCAAGAATTA-AA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
*
73797 AGATTGACTTCTCTTCACGAAGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73835 AGATTGACTTATCTTCATGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* *
73873 AGATTGACTTCTTTTC-CTGAGGAAGTCAAGAATAAAAA
1 AGATTGACTTCTCTTCAC-GAGGAAGTCAAGAATAACAA
* * * *
73911 ATATTGGCCTCTCTTCACGAGGAAGTCAAGAATAAAAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
73949 AGATTGACTTCTCTTC-CTGAGGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCAC-GAGGAAGTCAAGAATAACAA
* * * * * * *
73987 AGGTTAACTCCTATTTATGACGAAGTCAAGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* ** * * * *
74025 AGATTAACGCCTTTTCGCGAGGGAGTCAGGAATAACAA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
* * * *
74063 AGATTAACTTCTCTTCACAAGGAAGTTAAGAATAACGA
1 AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
74101 AGATTGA
1 AGATTGA
74108 AAATTGACTC
Statistics
Matches: 1093, Mismatches: 144, Indels: 60
0.84 0.11 0.05
Matches are distributed among these distances:
35 34 0.03
36 1 0.00
37 74 0.07
38 939 0.86
39 7 0.01
40 2 0.00
41 1 0.00
42 2 0.00
45 2 0.00
46 2 0.00
47 2 0.00
48 1 0.00
49 26 0.02
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.25
Consensus pattern (38 bp):
AGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACAA
Found at i:73718 original size:49 final size:49
Alignment explanation
Indices: 73619--73718 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 49
73609 CTTCACAAGG
* ** * *
73619 AAGTTAAGAATAACAAAGATTGACTTTTCTTCTCAAGGAAGTCAATAAT
1 AAGTCAAGAATAACAAAGATTGACTCCTCTTCACAAGGAAGTCAAGAAT
* *
73668 AAGTCAAGAATAACAAAGATTGACTCCTCTTCACGAGGAAGTCAGGAAT
1 AAGTCAAGAATAACAAAGATTGACTCCTCTTCACAAGGAAGTCAAGAAT
73717 AA
1 AA
73719 AAAAGATTGA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (49 bp):
AAGTCAAGAATAACAAAGATTGACTCCTCTTCACAAGGAAGTCAAGAAT
Found at i:82071 original size:20 final size:20
Alignment explanation
Indices: 82035--82101 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 20
82025 CTGGTTACTA
*
82035 TTGTTCACTATTATTGGTATG
1 TTGTTCCCTA-TATTGGTATG
82056 TTGTTCCCTATATTGGTATG
1 TTGTTCCCTATATTGGTATG
* *
82076 TTGTTCCCTGGTATTGGTCTG
1 TTGTTCCCT-ATATTGGTATG
82097 TTGTT
1 TTGTT
82102 TTCTTTCTCC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
20 19 0.45
21 23 0.55
ACGTcount: A:0.12, C:0.13, G:0.22, T:0.52
Consensus pattern (20 bp):
TTGTTCCCTATATTGGTATG
Found at i:82878 original size:25 final size:23
Alignment explanation
Indices: 82832--82891 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
82822 ATTATATACT
* * *
82832 TATATTTATATTTGTTTTCAAACC
1 TATA-TTATATTTATTTCCAAAAC
82856 ATATATTATATTTATCTTCCAAAAC
1 -TATATTATATTTAT-TTCCAAAAC
82881 TATATT-TATTT
1 TATATTATATTT
82892 TCAAAACTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 5 0.16
24 15 0.48
25 11 0.35
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.53
Consensus pattern (23 bp):
TATATTATATTTATTTCCAAAAC
Found at i:82898 original size:18 final size:19
Alignment explanation
Indices: 82862--82902 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
82852 AACCATATAT
82862 TATATTTATCTTCCAAAAC
1 TATATTTATCTTCCAAAAC
*
82881 TATATTTAT-TTTCAAAAC
1 TATATTTATCTTCCAAAAC
82899 TATA
1 TATA
82903 CTATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (19 bp):
TATATTTATCTTCCAAAAC
Found at i:82909 original size:25 final size:25
Alignment explanation
Indices: 82881--82955 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 25
82871 CTTCCAAAAC
82881 TATATTTATTTTCAAAACTATACTA
1 TATATTTATTTTCAAAACTATACTA
*
82906 TATATATATTTTTC-AAAC-ACT-CTA
1 TATATTTA-TTTTCAAAACTA-TACTA
*
82930 TA-CTTTATATTTCAAAACTATA-TA
1 TATATTTAT-TTTCAAAACTATACTA
82954 TA
1 TA
82956 GTATACATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
22 1 0.02
23 7 0.17
24 15 0.37
25 13 0.32
26 5 0.12
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (25 bp):
TATATTTATTTTCAAAACTATACTA
Found at i:82960 original size:22 final size:22
Alignment explanation
Indices: 82902--82960 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
82892 TCAAAACTAT
*
82902 ACTATATATATATTTTTCAAAC
1 ACTATATATATATATTTCAAAC
* *
82924 ACTCTATACTTTATATTTCAAA-
1 ACTATATA-TATATATTTCAAAC
82946 ACTATATATAGTATA
1 ACTATATATA-TATA
82961 CATATATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 1 0.03
22 18 0.60
23 11 0.37
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.44
Consensus pattern (22 bp):
ACTATATATATATATTTCAAAC
Found at i:83003 original size:15 final size:16
Alignment explanation
Indices: 82974--83007 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
82964 ATATATAACC
82974 AAAATAAAATAAAACA
1 AAAATAAAATAAAACA
*
82990 AAAATAAACT-AAACA
1 AAAATAAAATAAAACA
83005 AAA
1 AAA
83008 GAAAACTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAATAAAATAAAACA
Found at i:83518 original size:45 final size:45
Alignment explanation
Indices: 83464--83563 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
83454 AATCCGAAAG
* * *
83464 ATTGACTCCTCTTTACGAGAAAGTCAATAAGGAAAACACTAAAAT
1 ATTGACTCCTCTTCACGAGAAAGTCAAGAAAGAAAACACTAAAAT
* *
83509 ATTGACTCCTCTTCACGAGAAAGTCAAGAAAGACAACACTGAAAT
1 ATTGACTCCTCTTCACGAGAAAGTCAAGAAAGAAAACACTAAAAT
*
83554 ATTGATTCCT
1 ATTGACTCCT
83564 ATTGTAACAC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (45 bp):
ATTGACTCCTCTTCACGAGAAAGTCAAGAAAGAAAACACTAAAAT
Found at i:84313 original size:45 final size:44
Alignment explanation
Indices: 84209--84386 Score: 257
Period size: 44 Copynumber: 4.0 Consensus size: 44
84199 ATACCATGAG
* * **
84209 TGGCACCTTTCTGCCAATAATGTACCATTATATATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* *
84253 TGGCACATTTCTGCCAATAATGCATCGTTATGCATTTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCA-TTTTCATTTA
* *
84298 TGGCACCTTTATGCCAATAATGCACCGTTATGCATTTTCATTTC
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* *
84342 TGACATCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
84386 T
1 T
84387 TTTAGAGCAG
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
44 78 0.66
45 41 0.34
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (44 bp):
TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
Found at i:84313 original size:89 final size:88
Alignment explanation
Indices: 84209--84386 Score: 259
Period size: 89 Copynumber: 2.0 Consensus size: 88
84199 ATACCATGAG
* * * *
84209 TGGCACCTTTCTGCCAATAATGTACCATTATATATTTTCATTTATGGCA-CATTTCTGCCAATAA
1 TGGCACCTTTATGCCAATAATGCACCATTATACATTTTCATTTATGACATC-TTTCTGCCAATAA
*
84273 TGCATCGTTATGCATTTTTCATTTA
65 TGCACCGTTATGCA-TTTTCATTTA
* * *
84298 TGGCACCTTTATGCCAATAATGCACCGTTATGCATTTTCATTTCTGACATCTTTCTGCCAATAAT
1 TGGCACCTTTATGCCAATAATGCACCATTATACATTTTCATTTATGACATCTTTCTGCCAATAAT
84363 GCACCGTTATGCATTTTCATTTA
66 GCACCGTTATGCATTTTCATTTA
84386 T
1 T
84387 TTTAGAGCAG
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
88 11 0.14
89 68 0.85
90 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.42
Consensus pattern (88 bp):
TGGCACCTTTATGCCAATAATGCACCATTATACATTTTCATTTATGACATCTTTCTGCCAATAAT
GCACCGTTATGCATTTTCATTTA
Found at i:86934 original size:73 final size:75
Alignment explanation
Indices: 86766--86926 Score: 199
Period size: 73 Copynumber: 2.2 Consensus size: 75
86756 GGGGCTTATT
*
86766 TAGTATA-TATATT-AATATTATATTTTATCTTTGTATTCTAGTTTAAATAGATATTAGTATTTC
1 TAGTATATTATTTTAAATATTATATTTTATCTTTGTATTCTAGTTTAAATAGATATTAGTATTTC
*
86829 AATTAGGATT
66 AATTAGGATA
* * * *
86839 TAGTATATTATTTTAAATATTATTTTTTATC-TT-TATTTTAGTTTAAATAG-TTTTAAGTTTTT
1 TAGTATATTATTTTAAATATTATATTTTATCTTTGTATTCTAGTTTAAATAGATATT-AGTATTT
*
86901 TAATTAGGATAA
65 CAATTAGGAT-A
86913 TAG-ATATTATTTTA
1 TAGTATATTATTTTA
86927 TGAATTATCT
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
72 3 0.04
73 49 0.64
74 10 0.13
75 15 0.19
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (75 bp):
TAGTATATTATTTTAAATATTATATTTTATCTTTGTATTCTAGTTTAAATAGATATTAGTATTTC
AATTAGGATA
Found at i:87583 original size:18 final size:18
Alignment explanation
Indices: 87560--87602 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
87550 CTTTAGATCA
87560 TTTATTTAATTATT-TTCT
1 TTTATTTAATTATTATT-T
*
87578 TTTATTTAATTCTTATTT
1 TTTATTTAATTATTATTT
87596 TTTATTT
1 TTTATTT
87603 TAAAAACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTAATTATTATTT
Found at i:95184 original size:86 final size:86
Alignment explanation
Indices: 94989--95453 Score: 574
Period size: 86 Copynumber: 5.4 Consensus size: 86
94979 AAGAACATCT
* * * ** * **
94989 CACATAACTTTCCCATGAAGGGGAGTCATCCAAATATAATCTCACCTGGTTCA-AATCGTGAATA
1 CACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATAATCTCACCTGGTTCAGACCCGCGAAGG
* *
95053 TGAACCACCTTAAGAATATAC
66 GGAACCACCTGAAGAATATAC
* * * * *
95074 CGCATAACTTTCCCGTGAAGGGGAGTTATCCAAAGATAATCTCACATGGTTCAGACCCGCGAATG
1 CACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATAATCTCACCTGGTTCAGACCCGCGAAGG
*
95139 GGAACCACCTGAAGAATGTAC
66 GGAACCACCTGAAGAATATAC
* *
95160 CACATGATTTTCCCGTGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCGAAGG
1 CACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATAATCTCACCTGGTTCAGACCCGCGAAGG
* *
95225 GGAGCCACCTGAGGAATATAC
66 GGAACCACCTGAAGAATATAC
* * * * *
95246 CACATTACTTTCCTGTGAAGGGGAGTCATCAAAAGATAATCTTACCTGGTTTAGACCCGCGAAGG
1 CACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATAATCTCACCTGGTTCAGACCCGCGAAGG
*
95311 GGAACCACATGAAGAATATAC
66 GGAACCACCTGAAGAATATAC
* * * * * *
95332 CACATGACTTTCCCATGAAGGGGAGTCATCCAAATATCATCTCACCTGGTCCATACCCGTGAAGG
1 CACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATAATCTCACCTGGTTCAGACCCGCGAAGG
*
95397 GGAACTACCTGAAGAATATAC
66 GGAACCACCTGAAGAATATAC
* * * *
95418 CA-ATTGGCTTTCCCGTGAAAGGAAGTCATCTAAAGA
1 CACA-TGACTTTCCCGTGAAGGGGAGTCATCCAAAGA
95454 ATTATGATCG
Statistics
Matches: 327, Mismatches: 51, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
85 49 0.15
86 278 0.85
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (86 bp):
CACATGACTTTCCCGTGAAGGGGAGTCATCCAAAGATAATCTCACCTGGTTCAGACCCGCGAAGG
GGAACCACCTGAAGAATATAC
Found at i:96230 original size:76 final size:78
Alignment explanation
Indices: 96102--96251 Score: 207
Period size: 76 Copynumber: 1.9 Consensus size: 78
96092 TATATATGAA
** *
96102 TATTATATTTTATCTTTGTATTCTAGTTTAAATAGATGTTAGTATTTCAATTAGGATTTAGGATA
1 TATTATATTTTATCTTTGTATTCTAGTTTAAATAGATGTTAGTATTTCAATTAGGATAAAAGATA
96167 TTATTTTAAATAT
66 TTATTTTAAATAT
* * * *
96180 TATTTTATTTTATCTTTGT-TT-TAGTTTAAATAG-TTTTAAGTGTTTTAATTAGGATAAAAGAT
1 TATTATATTTTATCTTTGTATTCTAGTTTAAATAGATGTT-AGTATTTCAATTAGGATAAAAGAT
96242 ATTATTTTAA
65 ATTATTTTAA
96252 GAATTACCTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
75 3 0.05
76 41 0.64
77 2 0.03
78 18 0.28
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.54
Consensus pattern (78 bp):
TATTATATTTTATCTTTGTATTCTAGTTTAAATAGATGTTAGTATTTCAATTAGGATAAAAGATA
TTATTTTAAATAT
Found at i:96904 original size:18 final size:19
Alignment explanation
Indices: 96881--96924 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
96871 CTTTAGATCA
96881 TTTATTTAATTATT-TTCT
1 TTTATTTAATTATTATTCT
* *
96899 TTTATTTAATTCTTATTTT
1 TTTATTTAATTATTATTCT
96918 TTTATTT
1 TTTATTT
96925 TAAAAACAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTAATTATTATTCT
Found at i:97018 original size:18 final size:18
Alignment explanation
Indices: 96964--97028 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
96954 TCTTTATTAC
*
96964 TATTATTTATTATTTTAT
1 TATTATTTTTTATTTTAT
*
96982 TA-TATTTCTCTTTTATTTAT
1 TATTATTT-T-TTAT-TTTAT
*
97002 TATTATTTTTTGTTTTAT
1 TATTATTTTTTATTTTAT
*
97020 TTTTATTTT
1 TATTATTTT
97029 CTTTTTAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 5 0.13
18 15 0.38
19 6 0.15
20 8 0.21
21 5 0.13
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (18 bp):
TATTATTTTTTATTTTAT
Found at i:97018 original size:38 final size:37
Alignment explanation
Indices: 96956--97071 Score: 100
Period size: 38 Copynumber: 3.2 Consensus size: 37
96946 ATTTTTTATC
96956 TTTATTACTATTATTTATTATTTTA-TTATATTTCTCT
1 TTTATTACTATTATTTATTATTTTATTTATATTT-TCT
* * * *
96993 TTTATTTATTATTATTTTTTGTTTTATTTTTATTTTCT
1 TTTA-TTACTATTATTTATTATTTTATTTATATTTTCT
* *
97031 TTT-TAAAC-ATTTTTTCA-TATTTTA-TTAT-TTTTCT
1 TTTAT-TACTATTATTT-ATTATTTTATTTATATTTTCT
97065 TTTATTA
1 TTTATTA
97072 AATTTAATAA
Statistics
Matches: 63, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
34 10 0.16
35 4 0.06
36 13 0.21
37 5 0.08
38 24 0.38
39 7 0.11
ACGTcount: A:0.22, C:0.06, G:0.01, T:0.72
Consensus pattern (37 bp):
TTTATTACTATTATTTATTATTTTATTTATATTTTCT
Found at i:97025 original size:21 final size:22
Alignment explanation
Indices: 96976--97026 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
96966 TTATTTATTA
96976 TTTTATTATATTTCTCTTTTAT
1 TTTTATTATATTTCTCTTTTAT
* *
96998 TTATTATTAT-TTTTTGTTTTAT
1 TT-TTATTATATTTCTCTTTTAT
97020 TTTTATT
1 TTTTATT
97027 TTCTTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 14 0.54
23 7 0.27
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTATTATATTTCTCTTTTAT
Found at i:97028 original size:11 final size:11
Alignment explanation
Indices: 96976--97035 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
96966 TTATTTATTA
*
96976 TTTTATTATAT
1 TTTTATTTTAT
* *
96987 TTCTCTTTTAT
1 TTTTATTTTAT
*
96998 TTATTATTAT-T
1 TT-TTATTTTAT
*
97009 TTTTGTTTTAT
1 TTTTATTTTAT
*
97020 TTTTATTTTCT
1 TTTTATTTTAT
97031 TTTTA
1 TTTTA
97036 AACATTTTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
10 5 0.14
11 28 0.76
12 4 0.11
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:97034 original size:22 final size:22
Alignment explanation
Indices: 96969--97026 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
96959 ATTACTATTA
* * *
96969 TTTATTATTTTATTATATTTCTCT
1 TTTATT-TATTATTAT-TTTTTGT
96993 TTTATTTATTATTATTTTTTGT
1 TTTATTTATTATTATTTTTTGT
97015 TTTATTT-TTATT
1 TTTATTTATTATT
97027 TTCTTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.16
22 12 0.39
23 8 0.26
24 6 0.19
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTATTTATTATTATTTTTTGT
Found at i:97126 original size:42 final size:41
Alignment explanation
Indices: 97030--97126 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 41
97020 TTTTATTTTC
* *
97030 TTTTTAAACATTTTTTCATATTTTATTATTTTTCTTTTATTA
1 TTTTTAAA-ATTTCTTCATATTTTATTATTTTTCTTTTAATA
**
97072 AATTTAATAATTTCTTCAT-TTATT-TTATTTTTTCTTTTAATA
1 TTTTTAA-AATTTCTTCATATT-TTATTA-TTTTTCTTTTAATA
97114 TTTTTTAAAATTT
1 -TTTTTAAAATTT
97127 AAAATTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
41 5 0.11
42 34 0.76
43 6 0.13
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (41 bp):
TTTTTAAAATTTCTTCATATTTTATTATTTTTCTTTTAATA
Found at i:97127 original size:7 final size:7
Alignment explanation
Indices: 97117--97147 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
97107 TTTAATATTT
97117 TTTAAAA
1 TTTAAAA
97124 TTTAAAA
1 TTTAAAA
97131 TTTAAAA
1 TTTAAAA
*
97138 TTTAATA
1 TTTAAAA
97145 TTT
1 TTT
97148 CATTCTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TTTAAAA
Found at i:99122 original size:56 final size:56
Alignment explanation
Indices: 99061--99504 Score: 628
Period size: 56 Copynumber: 8.0 Consensus size: 56
99051 CCCACTACCA
* *
99061 ATACGAAAATTCATAAACTTGTTATAAATTTCTTAGCTTTTGCACACAAAGTGCCC
1 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
* * **
99117 ATACGAAATTTCATAAACTTATTATGAATTTTTTAGC-TTTGCACAGGAAGTGCCC
1 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
* * * * *
99172 ATACGGAAATTCATAAACTCATTATAAATTTCTTAGCTTTTACACACCAAGTGCCC
1 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
* * *
99228 ATACAAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAATGCGCCC
1 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
99284 ATAC-AGAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
1 ATACGA-AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
* * * *
99340 ATATGGAAATTCATAAACTTATTATGAATTTCTTATCTTTTGCACACAAAGTTCCC
1 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
* * *
99396 ATACGGAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACATAAAGTGCCC
1 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
* *
99451 ATAC-AGAAATTCATAAACTTATTATGAATTTCTTAG-TTTTGCACGCATAGTGCC
1 ATACGA-AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCC
99505 ATTTGGTAAT
Statistics
Matches: 346, Mismatches: 38, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
55 114 0.33
56 232 0.67
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (56 bp):
ATACGAAAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCC
Found at i:104949 original size:56 final size:56
Alignment explanation
Indices: 104833--105422 Score: 809
Period size: 56 Copynumber: 10.6 Consensus size: 56
104823 ACCGTTACAA
* * *
104833 AAATTCATAAACTTATTATGAATTTCTTAG-TTTTGCACACAAATTGCACATATGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
*
104888 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
*
104944 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGACCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* ** **
105000 AAATTCATAAACTTATTATGAATTTCTTAGC-TTTGCACA-AGAATTTTCCATACAA
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACA-AAGTGCCCATACGG
* * **
105055 AAATTCATAAACTTATTATGAATATCTTAGGTTTTGCACACAAAGTGCCCATACAA
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* * * *
105111 AAATTCATAAACTTGTTACGAATTTCTTAGCTTTTGTACACAAAGTCCCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
*
105167 AAATTCATAAACTTATTATGAA-TTCTTAGCTTTTTCACACAAAGTGCCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* *
105222 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTACACACAAAGTACCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* **
105278 AAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACGTAAAGTGCCCATACGG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* * *** * *
105333 AAATTCATAAACTAATTATGAATTTCTTA-ATTTTGCATGTAAAGTGCCCAAACAG
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
**
105388 AAATTCATAATAAGT-TTATGAATTTCTTAG-TTTTG
1 AAATTCATAA-ACTTATTATGAATTTCTTAGCTTTTG
105423 TACGCATAGT
Statistics
Matches: 484, Mismatches: 43, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
54 1 0.00
55 228 0.47
56 254 0.52
57 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (56 bp):
AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
Found at i:104954 original size:111 final size:111
Alignment explanation
Indices: 104833--105422 Score: 821
Period size: 111 Copynumber: 5.3 Consensus size: 111
104823 ACCGTTACAA
* * *
104833 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAATTGCACATATGGAAATTCATAA
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAA
104898 ACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
66 ACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
*
104944 AAATTCATAAACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTGACCATACGGAAATTCATA
1 AAATTCATAAACTTATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCCATACGGAAATTCATA
* * **
105009 AACTTATTATGAATTTCTTAGC-TTTGCACA-AGAATTTTCCATACAA
65 AACTTATTATGAATTTCTTAGCTTTTGCACACA-AAGTTCCCATACGG
* **
105055 AAATTCATAAACTTATTATGAATATCTTAGGTTTTGCACACAAAGTGCCCATACAAAAATTCATA
1 AAATTCATAAACTTATTATGAATTTCTTA-GTTTTGCACACAAAGTGCCCATACGGAAATTCATA
* * * *
105120 AACTTGTTACGAATTTCTTAGCTTTTGTACACAAAGTCCCCATACGG
65 AACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
*
105167 AAATTCATAAACTTATTATGAA-TTCTTAGCTTTTTCACACAAAGTGCCCATACGGAAATTCATA
1 AAATTCATAAACTTATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCCATACGGAAATTCATA
* *
105231 AACTTATTATGAATTTCTTAGCTTTTACACACAAAGTACCCATACGG
65 AACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
* **
105278 AAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACGTAAAGTGCCCATACGGAAATTCATAA
1 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAA
* * *** * * *
105343 ACTAATTATGAATTTCTTA-ATTTTGCATGTAAAGTGCCCAAACAG
66 ACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
**
105388 AAATTCATAATAAGT-TTATGAATTTCTTAGTTTTG
1 AAATTCATAA-ACTTATTATGAATTTCTTAGTTTTG
105423 TACGCATAGT
Statistics
Matches: 426, Mismatches: 45, Indels: 17
0.87 0.09 0.03
Matches are distributed among these distances:
110 50 0.12
111 277 0.65
112 98 0.23
113 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (111 bp):
AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAA
ACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGG
Found at i:105117 original size:167 final size:166
Alignment explanation
Indices: 104833--105422 Score: 776
Period size: 167 Copynumber: 3.5 Consensus size: 166
104823 ACCGTTACAA
* * *
104833 AAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAATTGCACATATGGAAATTCATAA
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTGCACACAAATT-CCCATACGGAAATTCATAA
*
104898 ACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTTCCCATACGGAAATTCATAAACTTATTAT
65 ACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTACCCATACGGAAATTCATAAACTTATTAT
*
104963 GAATTTCTTAGCTTTTGCACACAAAGTGACCATACGG
130 GAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* **
105000 AAATTCATAAACTTATTATGAATTTCTTAGCTTTGCACA-AGAATTTTCCATACAAAAATTCATA
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTGCACACA-AA-TTCCCATACGGAAATTCATA
* * * ** *
105064 AACTTATTATGAATATCTTAGGTTTTGCACACAAAGTGCCCATACAAAAATTCATAAACTTGTTA
64 AACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTACCCATACGGAAATTCATAAACTTATTA
* * *
105129 CGAATTTCTTAGCTTTTGTACACAAAGTCCCCATACGG
129 TGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* *
105167 AAATTCATAAACTTATTATGAA-TTCTTAGCTTTTTCACACAAAGTGCCCATACGGAAATTCATA
1 AAATTCATAAACTTATTATGAATTTCTTAGC-TTTGCACACAAA-TTCCCATACGGAAATTCATA
* *
105231 AACTTATTATGAATTTCTTAGCTTTTACACACAAAGTACCCATACGGAAATTCATAAACTCATTA
64 AACTTATTATGAATTTCTTAGCTTTTGCACACAAAGTACCCATACGGAAATTCATAAACTTATTA
**
105296 TGAATTTCTTAG-TTTTGCACGTAAAGTGCCCATACGG
129 TGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
* ** *** * * *
105333 AAATTCATAAACTAATTATGAATTTCTTAATTTTGCATGTAAAGTGCCCAAACAGAAATTCATAA
1 AAATTCATAAACTTATTATGAATTTCTTAGCTTTGCACACAAA-TTCCCATACGGAAATTCATAA
**
105398 TAAGT-TTATGAATTTCTTAG-TTTTG
65 -ACTTATTATGAATTTCTTAGCTTTTG
105423 TACGCATAGT
Statistics
Matches: 370, Mismatches: 47, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
165 4 0.01
166 94 0.25
167 269 0.73
168 3 0.01
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (166 bp):
AAATTCATAAACTTATTATGAATTTCTTAGCTTTGCACACAAATTCCCATACGGAAATTCATAAA
CTTATTATGAATTTCTTAGCTTTTGCACACAAAGTACCCATACGGAAATTCATAAACTTATTATG
AATTTCTTAGCTTTTGCACACAAAGTGCCCATACGG
Done.