Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004981.1 Hibiscus syriacus cultivar Beakdansim tig00011179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89141

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18094--18150
25
2.3
25
84
0
69
52
1
3
42
1.28
20903--21183
140
2.0
140
99
0
553
44
14
25
16
1.84
25294--25352
26
2.3
26
84
0
82
45
5
3
45
1.42
27003--27043
19
2.2
19
100
0
82
51
9
14
24
1.72
27431--27459
2
14.5
2
100
0
58
51
0
0
48
1.00
27470--27506
12
3.1
12
92
0
56
13
35
0
51
1.41
27462--27509
16
3.0
16
87
0
60
14
33
0
52
1.42
30613--30659
23
2.0
23
100
0
94
38
8
8
44
1.65
30704--30749
20
2.3
20
88
3
67
34
0
26
39
1.57
38802--38842
22
1.9
21
90
5
64
34
36
2
26
1.70
39164--39237
30
2.4
31
82
15
82
70
4
16
9
1.29
51013--51042
12
2.4
13
94
5
53
33
6
0
60
1.23
56292--56364
2
36.5
2
97
0
137
0
1
49
49
1.09
61289--61667
55
6.9
55
85
2
449
32
20
17
29
1.96
61696--61741
2
23.0
2
100
0
92
50
0
0
50
1.00
61987--62106
63
1.9
61
89
3
186
28
26
15
29
1.96
63939--63984
19
2.3
20
92
3
76
78
13
8
0
0.97
71261--71294
15
2.3
15
89
0
50
5
26
38
29
1.80
75722--75764
23
1.9
22
90
4
68
11
0
37
51
1.39
75722--75771
23
2.2
23
85
7
66
10
0
40
50
1.36
76539--76667
41
3.1
41
74
5
107
31
20
20
27
1.97
76257--77349
275
4.0
274
87
2
1528
33
20
16
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76934--77014
39
2.1
40
83
4
103
32
20
13
33
1.92
76257--77349
551
2.0
550
91
2
1773
33
20
16
30
1.94
77214--77643
98
4.4
97
88
3
623
36
20
12
31
1.89
77556--77695
53
2.5
55
82
10
169
40
21
9
28
1.84
79011--79076
32
2.1
32
94
0
114
43
12
6
37
1.67
84510--84552
21
2.0
21
90
0
68
51
0
0
48
1.00
84515--84540
13
2.0
13
100
0
52
53
0
0
46
1.00
84950--85126
60
3.0
60
94
0
318
38
24
13
23
1.91
85390--85440
24
2.3
21
86
10
66
50
1
11
35
1.50
86838--86968
36
3.7
35
76
5
118
35
16
19
29
1.93
86864--86979
36
3.2
37
80
4
139
36
17
18
27
1.94
86838--86979
72
2.0
72
85
0
194
35
16
19
28
1.93

Tables:   1

The End!