Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004982.1 Hibiscus syriacus cultivar Beakdansim tig00011180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72508
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:934 original size:20 final size:20
Alignment explanation
Indices: 911--953 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
901 ATTCCATCAC
911 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGCTCCTAA
* * *
931 ATGCATCTATATGGTTCTAA
1 ATGCAACTATATGCTCCTAA
951 ATG
1 ATG
954 GGCTCTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGCAACTATATGCTCCTAA
Found at i:1581 original size:16 final size:16
Alignment explanation
Indices: 1560--1593 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
1550 ATGCTATAGT
1560 AAGTTGACCTAAGTAA
1 AAGTTGACCTAAGTAA
1576 AAGTTGACCTAAGTAA
1 AAGTTGACCTAAGTAA
1592 AA
1 AA
1594 TCATTAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.24
Consensus pattern (16 bp):
AAGTTGACCTAAGTAA
Found at i:4608 original size:34 final size:33
Alignment explanation
Indices: 4562--4642 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 33
4552 TTCTAAATAC
* * * *
4562 TTTTTGAA-TATTTTGAGCTTTTAATTTTTTATAA
1 TTTTT-AATTATTTTGAACTTTTAAATATTT-CAA
4596 TTTTTAATTATTTTGAACTTTTAAATATTTCAA
1 TTTTTAATTATTTTGAACTTTTAAATATTTCAA
*
4629 TTTTTAATAATTTT
1 TTTTTAATTATTTT
4643 TAATTTTCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 17 0.41
34 24 0.59
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.62
Consensus pattern (33 bp):
TTTTTAATTATTTTGAACTTTTAAATATTTCAA
Found at i:4617 original size:17 final size:17
Alignment explanation
Indices: 4570--4667 Score: 67
Period size: 17 Copynumber: 5.8 Consensus size: 17
4560 ACTTTTTGAA
*
4570 TATTTTGAGCTTTTAAT
1 TATTTTGAACTTTTAAT
* *
4587 T-TTTTATAATTTTTAAT
1 TATTTT-GAACTTTTAAT
*
4604 TATTTTGAACTTTTAAA
1 TATTTTGAACTTTTAAT
* *
4621 TA-TTTCAATTTTTAAT
1 TATTTTGAACTTTTAAT
* *
4637 AATTTTTAA-TTTTCAAT
1 TATTTTGAACTTTT-AAT
*
4654 AATTTTGATACTTT
1 TATTTTGA-ACTTT
4668 ATATGATTTA
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
16 20 0.32
17 35 0.56
18 5 0.08
19 3 0.05
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (17 bp):
TATTTTGAACTTTTAAT
Found at i:6885 original size:20 final size:20
Alignment explanation
Indices: 6860--6899 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6850 GCGGTCCTTC
6860 GGGACAATACTATGTGGTCT
1 GGGACAATACTATGTGGTCT
6880 GGGACAATACTATGTGGTCT
1 GGGACAATACTATGTGGTCT
6900 TTTAGGACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (20 bp):
GGGACAATACTATGTGGTCT
Found at i:6976 original size:24 final size:24
Alignment explanation
Indices: 6911--6969 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
6901 TTAGGACAAT
*
6911 TTCTATGTGGCACTTCGGTGCATA
1 TTCTATGTGGCACTTCGATGCATA
* *
6935 TTCTACGCGGCACTTCGATGCA-A
1 TTCTATGTGGCACTTCGATGCATA
6958 TTCTATGTGGCA
1 TTCTATGTGGCA
6970 GTTTCGACTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (24 bp):
TTCTATGTGGCACTTCGATGCATA
Found at i:8580 original size:12 final size:12
Alignment explanation
Indices: 8565--8589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8555 AGTATCTTAG
8565 AGAGGTCGAGGA
1 AGAGGTCGAGGA
8577 AGAGGTCGAGGA
1 AGAGGTCGAGGA
8589 A
1 A
8590 TGAATCAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.48, T:0.08
Consensus pattern (12 bp):
AGAGGTCGAGGA
Found at i:9614 original size:47 final size:47
Alignment explanation
Indices: 9562--9766 Score: 328
Period size: 47 Copynumber: 4.4 Consensus size: 47
9552 TCATTTATCT
* *
9562 CATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTTAAATTC
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
*
9609 CATAAGCTCGTAAGCTTATTTTATCAACATACTTACCATTTAAATTC
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
*
9656 CATAAGCTCATAAGCTTATTTTATCAATATACTTACCATTTAAATTC
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
* *
9703 CATAAGCTCTTAAGCTTATTTTATCAATATACTTGCCA-TT--ATT-
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
9746 CATAAGCTCGTAAGCTTATTT
1 CATAAGCTCGTAAGCTTATTT
9767 GCATACTTAC
Statistics
Matches: 151, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
43 20 0.13
44 3 0.02
46 2 0.01
47 126 0.83
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40
Consensus pattern (47 bp):
CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
Found at i:9997 original size:61 final size:61
Alignment explanation
Indices: 9882--9997 Score: 178
Period size: 61 Copynumber: 1.9 Consensus size: 61
9872 CTAAACCTGC
*
9882 ACTAAGCTTACGCCATAGTGCTAATCCAGATATGATACATAAGGTCGTGCCCACCACCTAT
1 ACTAAGCTTACGCCATAGTGCTAATCCAGATATGATACATAAGGTCGTACCCACCACCTAT
* ** * *
9943 ACTAAGCTTACGCTATAGTGCTAATCTGGATATGATACATTAGGTCGTATCCACC
1 ACTAAGCTTACGCCATAGTGCTAATCCAGATATGATACATAAGGTCGTACCCACC
9998 TTACCGCACT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (61 bp):
ACTAAGCTTACGCCATAGTGCTAATCCAGATATGATACATAAGGTCGTACCCACCACCTAT
Found at i:13534 original size:22 final size:20
Alignment explanation
Indices: 13509--13558 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
13499 GTGAAATATA
13509 TTTTTTCTCTCATTTTTT-TT
1 TTTTTTCTC-CATTTTTTCTT
*
13529 TCTTTTCTTTCCATTTTTTCTT
1 T-TTTT-TCTCCATTTTTTCTT
13551 TTTTTTCT
1 TTTTTTCT
13559 TTTTCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 3 0.12
21 16 0.64
22 6 0.24
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTCTCCATTTTTTCTT
Found at i:13539 original size:4 final size:5
Alignment explanation
Indices: 13521--13611 Score: 50
Period size: 5 Copynumber: 18.8 Consensus size: 5
13511 TTTTCTCTCA
* ** *
13521 TTTTT TTTTC TTTTC -TTTC CATT- TTTTC TTTT- TTTTC TTTT- TCTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
* * *
13567 TTTT- TTTCCTA TTTTC TTTTC TTTT- TCTTC TTTTTC TTTTG TTTT
1 TTTTC TTT--TC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTT
13612 TTTATATAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 18
0.71 0.11 0.19
Matches are distributed among these distances:
4 19 0.28
5 40 0.60
6 5 0.07
7 3 0.04
ACGTcount: A:0.02, C:0.16, G:0.01, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:13539 original size:9 final size:8
Alignment explanation
Indices: 13523--13606 Score: 71
Period size: 9 Copynumber: 9.5 Consensus size: 8
13513 TTCTCTCATT
13523 TTTTTTTC
1 TTTTTTTC
13531 TTTTCTTTCC
1 TTTT-TTT-C
*
13541 ATTTTTTC
1 TTTTTTTC
13549 TTTTTTTTC
1 -TTTTTTTC
13558 TTTTTCTTC
1 TTTTT-TTC
13567 TTTTTTTCC
1 TTTTTTT-C
13576 TATTTTCTT-
1 T-TTTT-TTC
13585 TTCTTTTTC
1 TT-TTTTTC
13594 TTCTTTTTC
1 TT-TTTTTC
13603 TTTT
1 TTTT
13607 GTTTTTTTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 18
0.76 0.02 0.21
Matches are distributed among these distances:
8 17 0.26
9 38 0.58
10 8 0.12
11 2 0.03
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTTC
Found at i:13547 original size:18 final size:16
Alignment explanation
Indices: 13524--13586 Score: 72
Period size: 17 Copynumber: 3.7 Consensus size: 16
13514 TCTCTCATTT
13524 TTTTTTCTTTTCTTTCC
1 TTTTTTCTTTT-TTTCC
*
13541 ATTTTTTCTTTTTTTTCT
1 -TTTTTTC-TTTTTTTCC
13559 TTTTCTTCTTTTTTTCC
1 TTTT-TTCTTTTTTTCC
*
13576 TATTTTCTTTT
1 TTTTTTCTTTT
13587 CTTTTTCTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
16 7 0.17
17 15 0.38
18 14 0.35
19 4 0.10
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTCTTTTTTTCC
Found at i:13557 original size:27 final size:26
Alignment explanation
Indices: 13522--13590 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 26
13512 TTTCTCTCAT
13522 TTTTTTTTCTTTTCTTTCCATTTTTTC
1 TTTTTTTTCTTTTCTTT-CATTTTTTC
*
13549 TTTTTTTTCTTTT-TCTTCTTTTTTTC
1 TTTTTTTTCTTTTCT-TTCATTTTTTC
* *
13575 -CTATTTTCTTTTCTTT
1 TTTTTTTTCTTTTCTTT
13591 TTCTTCTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 12 0.32
26 10 0.27
27 15 0.41
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTTTTTTCTTTTCTTTCATTTTTTC
Found at i:13559 original size:22 final size:20
Alignment explanation
Indices: 13509--13560 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
13499 GTGAAATATA
*
13509 TTTTTTCTCTCATTTTTTTT
1 TTTTTTCTTTCATTTTTTTT
*
13529 TCTTTTCTTTCCATTTTTTCTT
1 TTTTTTCTTT-CATTTTTT-TT
13551 TTTTTTCTTT
1 TTTTTTCTTT
13561 TTCTTCTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 8 0.30
21 8 0.30
22 11 0.41
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTTCTTTCATTTTTTTT
Found at i:13562 original size:36 final size:36
Alignment explanation
Indices: 13522--13606 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
13512 TTTCTCTCAT
*
13522 TTTTTTTTCTTTTCTTTCC-ATTTT-TTCTTTTTTTTC
1 TTTTTTTTCTTTT-TTTCCTATTTTCTT-TTCTTTTTC
*
13558 TTTTTCTTCTTTTTTTCCTATTTTCTTTTCTTTTTC
1 TTTTTTTTCTTTTTTTCCTATTTTCTTTTCTTTTTC
*
13594 TTCTTTTTCTTTT
1 TTTTTTTTCTTTT
13607 GTTTTTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 5 0.12
36 36 0.84
37 2 0.05
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (36 bp):
TTTTTTTTCTTTTTTTCCTATTTTCTTTTCTTTTTC
Found at i:13594 original size:27 final size:27
Alignment explanation
Indices: 13526--13602 Score: 70
Period size: 26 Copynumber: 2.9 Consensus size: 27
13516 TCTCATTTTT
* * *
13526 TTTTCTTTTC-TTTCCATTTTTT-CTT
1 TTTTCTTTTCTTTTTCTTTTTTTCCTA
* *
13551 TTTTTTCTTT-TTCTTCTTTTTTTCCTA
1 TTTTCT-TTTCTTTTTCTTTTTTTCCTA
13578 TTTTCTTTTCTTTTTCTTCTTTTTC
1 TTTTCTTTTCTTTTTCTT-TTTTTC
13603 TTTTGTTTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
25 5 0.12
26 15 0.38
27 14 0.35
28 6 0.15
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (27 bp):
TTTTCTTTTCTTTTTCTTTTTTTCCTA
Found at i:16493 original size:47 final size:47
Alignment explanation
Indices: 16441--16645 Score: 292
Period size: 47 Copynumber: 4.4 Consensus size: 47
16431 TCATTTATCT
* * * *
16441 CATAAGATCGTAAGCTTATTTTACCAAAATACATACCATTTAAATTC
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
*
16488 CATAAGCTCGTAAGCTTATTTTATCAACATACTTACCATTTAAATTC
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
* *
16535 TATAAGCTCGTAAGTTTATTTTATCAATATACTTACCATTTAAATTC
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
* * *
16582 CATAAGCTCTTGAGCTTATTTTATCAATATACTTGCCA-TT--ATT-
1 CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
16625 CATAAGCTCGTAAGCTTATTT
1 CATAAGCTCGTAAGCTTATTT
16646 GCATACTTAC
Statistics
Matches: 144, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
43 19 0.13
44 3 0.02
46 2 0.01
47 120 0.83
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.40
Consensus pattern (47 bp):
CATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTAAATTC
Found at i:16866 original size:61 final size:61
Alignment explanation
Indices: 16754--16868 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 61
16744 GTAGTGCTAA
* * * *
16754 ACCTGCACTAAGCTTACGCCATAGTGTTAATCTGGATATAACACATAAGGTCGTGCCCACC
1 ACCTACACTAAGCTTACGCCATAGTGTTAATCCGAACATAACACATAAGGTCGTGCCCACC
* * * *
16815 ACCTACACTAAGCTTACGCTATAGTGTTAATCCGAACATGATACATTAGGTCGT
1 ACCTACACTAAGCTTACGCCATAGTGTTAATCCGAACATAACACATAAGGTCGT
16869 ATCCACCTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (61 bp):
ACCTACACTAAGCTTACGCCATAGTGTTAATCCGAACATAACACATAAGGTCGTGCCCACC
Found at i:23392 original size:15 final size:15
Alignment explanation
Indices: 23372--23419 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
23362 GCGTATATGC
23372 ACTATGTGAGTTCAT
1 ACTATGTGAGTTCAT
23387 ACTATGT--G---AT
1 ACTATGTGAGTTCAT
23397 A-TATGTGAGTTCAT
1 ACTATGTGAGTTCAT
23411 ACTATGTGA
1 ACTATGTGA
23420 CATTGATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
9 5 0.19
10 3 0.11
11 1 0.04
13 1 0.04
14 3 0.11
15 14 0.52
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (15 bp):
ACTATGTGAGTTCAT
Found at i:23401 original size:24 final size:24
Alignment explanation
Indices: 23374--23419 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
23364 GTATATGCAC
23374 TATGTGAGTTCATACTATGTGATA
1 TATGTGAGTTCATACTATGTGATA
23398 TATGTGAGTTCATACTATGTGA
1 TATGTGAGTTCATACTATGTGA
23420 CATTGATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (24 bp):
TATGTGAGTTCATACTATGTGATA
Found at i:24116 original size:22 final size:23
Alignment explanation
Indices: 24104--24148 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
24094 TCTCGAATGA
24104 CCACAT-AGGTTGTACCGAAGTG
1 CCACATAAGGTTGTACCGAAGTG
*
24126 CCACATAAGGTTGCACCGAAGTG
1 CCACATAAGGTTGTACCGAAGTG
24149 ACATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (23 bp):
CCACATAAGGTTGTACCGAAGTG
Found at i:24181 original size:21 final size:21
Alignment explanation
Indices: 24087--24199 Score: 79
Period size: 21 Copynumber: 5.2 Consensus size: 21
24077 AAAGTGCCAT
*
24087 ATAATTGTCTCGAATGACCAC
1 ATAATTGTCCCGAATGACCAC
* *
24108 ATAGGTTGTACCGAAGTG-CCAC
1 ATA-ATTGTCCCGAA-TGACCAC
*
24130 ATAAGGTTG-CACCGAAGTGA-CAT
1 ATAA--TTGTC-CCGAA-TGACCAC
**
24153 ATTTTTGTCCCGAATGACCAC
1 ATAATTGTCCCGAATGACCAC
* *
24174 ATAATTGTCCTGAAGGACCAC
1 ATAATTGTCCCGAATGACCAC
24195 ATAAT
1 ATAAT
24200 CCCTCGACTC
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
20 3 0.04
21 35 0.49
22 16 0.23
23 17 0.24
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (21 bp):
ATAATTGTCCCGAATGACCAC
Found at i:24824 original size:55 final size:55
Alignment explanation
Indices: 24743--24870 Score: 170
Period size: 55 Copynumber: 2.3 Consensus size: 55
24733 ACCCAAATTG
* * *
24743 CAAGGGTATCAATAC-CTCCTCAGTGTACCGATACACA-AGTAACACTCTATGTTT
1 CAAGGGTATTAATACACTCCTCAGTGTACCAATACACATA-TAACACTCGATGTTT
** *
24797 TGAGGGTATTAATACACTCCTCAGTGTACCAATACACATATGACACTCGATGTTT
1 CAAGGGTATTAATACACTCCTCAGTGTACCAATACACATATAACACTCGATGTTT
*
24852 CAAGGGTATTGATACACTC
1 CAAGGGTATTAATACACTC
24871 TCAACAGGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
54 12 0.19
55 50 0.79
56 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (55 bp):
CAAGGGTATTAATACACTCCTCAGTGTACCAATACACATATAACACTCGATGTTT
Found at i:28424 original size:15 final size:15
Alignment explanation
Indices: 28404--28442 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
28394 CAACTCATTC
28404 GGAGCCATCCTATAA
1 GGAGCCATCCTATAA
28419 GGAGCCATCCTATAA
1 GGAGCCATCCTATAA
28434 GGAGCCATC
1 GGAGCCATC
28443 GAAACTGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (15 bp):
GGAGCCATCCTATAA
Found at i:31017 original size:22 final size:21
Alignment explanation
Indices: 30996--31057 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
30986 AGCTCGTAAT
30996 TTGCACCGAAGTGCCACATAA
1 TTGCACCGAAGTGCCACATAA
* *
31017 TTGTC-CCGAAAG-ACCACATAGG
1 TTG-CACCG-AAGTGCCACATA-A
*
31039 TTGCACCGAAGTGACACAT
1 TTGCACCGAAGTGCCACAT
31058 TTTTGTCCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.19
Consensus pattern (21 bp):
TTGCACCGAAGTGCCACATAA
Found at i:31026 original size:21 final size:21
Alignment explanation
Indices: 31001--31069 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
30991 GTAATTTGCA
31001 CCGAAGTGCCACATAATTGTC
1 CCGAAGTGCCACATAATTGTC
* *
31022 CCGAAAG-ACCACATAGGTTG-C
1 CCG-AAGTGCCACATA-ATTGTC
* **
31043 ACCGAAGTGACACATTTTTGTC
1 -CCGAAGTGCCACATAATTGTC
31065 CCGAA
1 CCGAA
31070 AGACCATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (21 bp):
CCGAAGTGCCACATAATTGTC
Found at i:31746 original size:55 final size:56
Alignment explanation
Indices: 31659--31787 Score: 176
Period size: 55 Copynumber: 2.3 Consensus size: 56
31649 TTCGAAATTG
*
31659 CAAGGGTATTGATAC-CTCCTCAGTGTACCGATACACA-A-GTAGCACTAGATGTTTT
1 CAAGGGTATCGATACACTCCTCAGTGTACCGATACACATATG-A-CACTAGATGTTTT
* * *
31714 -GAGGGTATCGATACACTCCTCAGTTTACCGATACACATATGACACTCGATGTTTT
1 CAAGGGTATCGATACACTCCTCAGTGTACCGATACACATATGACACTAGATGTTTT
31769 CAAGGGTATCGATACACTC
1 CAAGGGTATCGATACACTC
31788 TCAACAGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
54 12 0.18
55 33 0.51
56 19 0.29
57 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (56 bp):
CAAGGGTATCGATACACTCCTCAGTGTACCGATACACATATGACACTAGATGTTTT
Found at i:32666 original size:24 final size:23
Alignment explanation
Indices: 32603--32703 Score: 98
Period size: 23 Copynumber: 4.3 Consensus size: 23
32593 GAGTCGAAGG
32603 TTCTACGC-AGTCTTTCGGGACAA
1 TTCTACGCTA-TCTTTCGGGACAA
* *
32626 TTCTACG-TGGTCATTCGGGACAA
1 TTCTACGCT-ATCTTTCGGGACAA
32649 TTTCTACGCTATCTTTCGGGACAA
1 -TTCTACGCTATCTTTCGGGACAA
* * * *
32673 TACTATGTTATCCTTCGGGACAA
1 TTCTACGCTATCTTTCGGGACAA
32696 TTTCTACG
1 -TTCTACG
32704 TGGCACTTAG
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
23 38 0.60
24 24 0.38
25 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (23 bp):
TTCTACGCTATCTTTCGGGACAA
Found at i:32672 original size:47 final size:47
Alignment explanation
Indices: 32603--32703 Score: 141
Period size: 47 Copynumber: 2.1 Consensus size: 47
32593 GAGTCGAAGG
* *
32603 TTCTACGCAGTCTTTCGGGACAATTCTACGTGGTCATTCGGGACAAT
1 TTCTACGCAGTCTTTCGGGACAATACTACGTGATCATTCGGGACAAT
* * *
32650 TTCTACGCTA-TCTTTCGGGACAATACTATGTTATCCTTCGGGACAAT
1 TTCTACGC-AGTCTTTCGGGACAATACTACGTGATCATTCGGGACAAT
32697 TTCTACG
1 TTCTACG
32704 TGGCACTTAG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 47 0.98
48 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (47 bp):
TTCTACGCAGTCTTTCGGGACAATACTACGTGATCATTCGGGACAAT
Found at i:35439 original size:23 final size:22
Alignment explanation
Indices: 35404--35448 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
35394 GACACGTTTA
*
35404 TAAAATTTGTAATTTTTTTAAAT
1 TAAAATTTGTAA-TTGTTTAAAT
35427 TAAAATTAT-TAATTGTTTAAAT
1 TAAAATT-TGTAATTGTTTAAAT
35449 GAAAGACCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 10 0.50
24 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
TAAAATTTGTAATTGTTTAAAT
Found at i:38273 original size:25 final size:25
Alignment explanation
Indices: 38242--38292 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
38232 AGTTCAGGAG
38242 TTAAAATAAAATTTTACTATTTCAT
1 TTAAAATAAAATTTTACTATTTCAT
38267 TTAAAATAAAATTTTACTATTTCAT
1 TTAAAATAAAATTTTACTATTTCAT
38292 T
1 T
38293 AAACTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (25 bp):
TTAAAATAAAATTTTACTATTTCAT
Found at i:44308 original size:143 final size:142
Alignment explanation
Indices: 44150--44406 Score: 340
Period size: 144 Copynumber: 1.8 Consensus size: 142
44140 ATATTAATTT
* *
44150 ATATATAAAATAT-AAATAAAATATTTATTTATTTAGAAATATCAGAAAAT-GACTTCTAAG-TG
1 ATATATAAAATATAAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATC-AAGTTG
* *
44212 CCTTAAGACAGCTCTTTTCTTCGATATTAAAAAATAAATAAATAATTAAAACATTTTTCTAAAAA
65 CCTTAAGACAG-TCCTTTCTT-AATATTAAAAAATAAATAAAT-ATTAAAACATTTTTCTAAAAA
44277 TAATAATAATATATTA
127 TAATAATAATATATTA
** ** * *
44293 ATATATAATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAGTTGT
1 ATATATAAAATATAAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCAAGTTGC
* * *
44358 TTTAAGACTGTCCTTTCTTAATATTGAAAAATAAATAAATATTAAAACA
66 CTTAAGACAGTCCTTTCTTAATATTAAAAAATAAATAAATATTAAAACA
44407 GGATTAAAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
142 9 0.09
143 30 0.31
144 44 0.45
145 15 0.15
ACGTcount: A:0.47, C:0.08, G:0.07, T:0.37
Consensus pattern (142 bp):
ATATATAAAATATAAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCAAGTTGC
CTTAAGACAGTCCTTTCTTAATATTAAAAAATAAATAAATATTAAAACATTTTTCTAAAAATAAT
AATAATATATTA
Found at i:44444 original size:27 final size:27
Alignment explanation
Indices: 44414--44465 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
44404 ACAGGATTAA
**
44414 AATAATTTCTATTAAAAATAAAATAAT
1 AATAATTAATATTAAAAATAAAATAAT
* *
44441 AATAATTAATATTTAAATTAAAATA
1 AATAATTAATATTAAAAATAAAATA
44466 TAACTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
AATAATTAATATTAAAAATAAAATAAT
Found at i:44616 original size:19 final size:20
Alignment explanation
Indices: 44585--44633 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
44575 AAATTAGAAT
*
44585 ATATTAAAATTAAATATCTA
1 ATATTATAATTAAATATCTA
* *
44605 AT-TTATAATTAATTATTTA
1 ATATTATAATTAAATATCTA
44624 ATATTATAAT
1 ATATTATAAT
44634 GACTAAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTATAATTAAATATCTA
Found at i:45940 original size:3 final size:3
Alignment explanation
Indices: 45932--45970 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
45922 TAAATGTATT
45932 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45971 AAAAGTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:46398 original size:76 final size:76
Alignment explanation
Indices: 46142--47256 Score: 1945
Period size: 76 Copynumber: 14.8 Consensus size: 76
46132 AGGCTTTAAG
* *
46142 ATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
* *
46207 GGTTT---AAG
66 GCTTTGAAAAC
* *
46215 ATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGCACTGTAGGTCTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
* *
46280 GGTTT---AAG
66 GCTTTGAAAAC
* *
46288 ATCAAAAAGCTTCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
*
46353 GTTTTGAAAAC
66 GCTTTGAAAAC
46364 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46429 GCTTTGAAAAC
66 GCTTTGAAAAC
* *
46440 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATACACTGTAAGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46505 GCTTTGAAAAC
66 GCTTTGAAAAC
*
46516 ATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46581 GCTTTGAAAAC
66 GCTTTGAAAAC
46592 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46657 GCTTTGAAAAC
66 GCTTTGAAAAC
*
46668 ATCAAAAAGCTCCCTAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46733 GCTTTGAAAAC
66 GCTTTGAAAAC
* * *
46744 ATCAAAAAGCTCCCTAAGGCTTTTTGGAAACATCATGGACTGTAGGACTTACAGATAACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46809 GCTTTGAAAAC
66 GCTTTGAAAAC
*
46820 ATCAAAAAGCTCCCGAAGGCTATTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
46885 GCTTTGAAAAC
66 GCTTTGAAAAC
* *
46896 ATCAAAAAGCTCCCGAAGGCTATTTGTAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
*
46961 GCTTTGAAGAC
66 GCTTTGAAAAC
* *
46972 ATCAAAAAGCTCCCAAAGGATTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
47037 GCTTTGAAAAC
66 GCTTTGAAAAC
*
47048 ATCAAAAAGCTCCCGAAGGCTATTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
47113 GCTTTGAAAAC
66 GCTTTGAAAAC
*
47124 ATCAAAAAGCTCCCGAAGGCTATTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
47189 GCTTTGAAAAC
66 GCTTTGAAAAC
*
47200 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGTACTGTAGGACTTACAGATG
1 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATG
47257 TGGGAAATAG
Statistics
Matches: 1005, Mismatches: 34, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
73 138 0.14
76 867 0.86
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (76 bp):
ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAG
GCTTTGAAAAC
Found at i:47956 original size:22 final size:22
Alignment explanation
Indices: 47931--48007 Score: 145
Period size: 22 Copynumber: 3.5 Consensus size: 22
47921 AATAAAGCTT
47931 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
*
47953 TCATCTTTAAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
47975 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
47997 TCATCTTTGAA
1 TCATCTTTGAA
48008 GAGTATAGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:52829 original size:16 final size:16
Alignment explanation
Indices: 52802--52882 Score: 101
Period size: 17 Copynumber: 4.9 Consensus size: 16
52792 TTTCCTTTTT
52802 TTTTTCCTTTTTTCTCA
1 TTTTT-CTTTTTTCTCA
*
52819 TTTTTCCTTTTTCAT-A
1 TTTTTCTTTTTTC-TCA
52835 TTTTTTCTTTTTTCTCA
1 -TTTTTCTTTTTTCTCA
*
52852 TTTTTCTTTTTTCATCT
1 TTTTTCTTTTTTC-TCA
52869 TTTTTCTTTTTTCT
1 TTTTTCTTTTTTCT
52883 TTCTTTGCTG
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
16 23 0.40
17 34 0.60
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTCTTTTTTCTCA
Found at i:52845 original size:7 final size:7
Alignment explanation
Indices: 52791--52884 Score: 64
Period size: 7 Copynumber: 12.1 Consensus size: 7
52781 CTTGATTCAA
*
52791 TTTTCCT
1 TTTTCTT
52798 TTTT-TT
1 TTTTCTT
*
52804 TTTCCTT
1 TTTTCTT
52811 TTTTCTCAT
1 TTTTCT--T
52820 TTTTCCTT
1 TTTT-CTT
*
52828 TTTCATATT
1 TTT--TCTT
52837 TTTTCTT
1 TTTTCTT
52844 TTTTCTCAT
1 TTTTCT--T
52853 TTTTCTTT
1 TTTTC-TT
52861 TTTCATCTT
1 TTT--TCTT
52870 TTTTCTT
1 TTTTCTT
52877 TTTTCTT
1 TTTTCTT
52884 T
1 T
52885 CTTTGCTGGA
Statistics
Matches: 71, Mismatches: 5, Indels: 22
0.72 0.05 0.22
Matches are distributed among these distances:
6 4 0.06
7 32 0.45
8 8 0.11
9 21 0.30
10 6 0.08
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTCTT
Found at i:52845 original size:33 final size:33
Alignment explanation
Indices: 52801--52882 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
52791 TTTTCCTTTT
52801 TTTTTTCCTTTTTTCTCATTTTTCCTTTTTCATA
1 TTTTTT-CTTTTTTCTCATTTTTCCTTTTTCATA
* *
52835 TTTTTTCTTTTTTCTCATTTTTCTTTTTTCATC
1 TTTTTTCTTTTTTCTCATTTTTCCTTTTTCATA
52868 TTTTTTCTTTTTTCT
1 TTTTTTCTTTTTTCT
52883 TTCTTTGCTG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 40 0.87
34 6 0.13
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (33 bp):
TTTTTTCTTTTTTCTCATTTTTCCTTTTTCATA
Found at i:58925 original size:27 final size:27
Alignment explanation
Indices: 58895--58946 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
58885 ACATGATTAA
*
58895 AATAATTTATATTAAAAATAAAATAAT
1 AATAATTAATATTAAAAATAAAATAAT
* *
58922 AATAATTAATATTTAAATTAAAATA
1 AATAATTAATATTAAAAATAAAATA
58947 TAACTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
AATAATTAATATTAAAAATAAAATAAT
Found at i:59097 original size:19 final size:20
Alignment explanation
Indices: 59066--59114 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
59056 AAATTAGAAT
*
59066 ATATTAAAATTAAATATCTA
1 ATATTATAATTAAATATCTA
* *
59086 AT-TTATAATTAATTATTTA
1 ATATTATAATTAAATATCTA
59105 ATATTATAAT
1 ATATTATAAT
59115 GGCTTAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTATAATTAAATATCTA
Found at i:60420 original size:3 final size:3
Alignment explanation
Indices: 60412--60444 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
60402 TAAATGTATT
*
60412 TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
60445 AAGTGAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:67524 original size:128 final size:125
Alignment explanation
Indices: 67299--67557 Score: 324
Period size: 128 Copynumber: 2.0 Consensus size: 125
67289 CACTATGCTT
* *
67299 GGTTTTACGGTTTTGCCTGGTGATGATGGATTCGATAAAGAAACAACCAAAATGAGGATCAAACT
1 GGTTTTACGGTTTTGCCTGGTGATGACGGATTCGATAAAAAAACAACCAAAATGAGGATCAAACT
* * * * *
67364 ATCCATTGTTCTTAGAGCTTAGAGTGGAAGTCATAAACATAAACTCCTTATTGTTGCTGA
66 ATCCAGTGTTCTTAGAGCTTAGAGTGGAAGTCATAAACACAAACTCCTGATTCTTACTGA
* * *
67424 GGTTTTACGG-TTTGCCTGGTTGATGACGTATTTGATAAAAAAACAACGAAAATGTTGAGG-TCC
1 GGTTTTACGGTTTTGCCTGG-TGATGACGGATTCGATAAAAAAACAACCAAAA---TGAGGAT-C
** * *
67487 AAACTATCTGGTGTTCTTAGTGCTTAGAGTGGAAGTCATAAACACGAACTCCTGATTCTTACTGA
61 AAACTATCCAGTGTTCTTAGAGCTTAGAGTGGAAGTCATAAACACAAACTCCTGATTCTTACTGA
*
67552 GATTTT
1 GGTTTT
67558 TACCATCACA
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
124 9 0.08
125 37 0.32
127 1 0.01
128 67 0.59
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (125 bp):
GGTTTTACGGTTTTGCCTGGTGATGACGGATTCGATAAAAAAACAACCAAAATGAGGATCAAACT
ATCCAGTGTTCTTAGAGCTTAGAGTGGAAGTCATAAACACAAACTCCTGATTCTTACTGA
Done.