Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: VEPZ01004984.1 Hibiscus syriacus cultivar Beakdansim tig00011184_pilon, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Length: 139136

Tables:   1   

This is table  1  of  1  ( 64 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--49
19
2.5
20
90
3
73
8
16
28
46
1.75
98--560
93
5.1
93
94
4
827
46
19
12
22
1.83
2244--2333
14
5.7
14
72
23
72
43
23
24
8
1.82
2258--2355
19
5.7
19
71
22
90
43
22
23
10
1.83
2237--2350
33
3.5
33
96
1
212
45
21
23
9
1.81
2367--2423
14
3.7
14
75
20
60
10
24
22
42
1.85
2364--2428
33
2.0
33
100
0
130
10
24
21
43
1.84
2408--2483
21
3.7
21
80
3
100
13
25
15
46
1.82
2407--2484
41
1.9
41
94
0
138
14
25
15
44
1.84
2563--2633
33
2.2
33
92
0
115
47
18
22
11
1.80
3014--3204
20
9.6
20
80
6
201
19
19
25
35
1.96
3191--3273
21
4.0
21
73
6
78
25
16
24
33
1.96
3171--3269
42
2.4
43
77
11
100
21
18
23
37
1.94
6147--6222
37
2.1
37
94
0
134
19
22
23
34
1.97
6491--6547
22
2.5
22
74
2
60
33
3
8
54
1.48
9560--9631
36
2.0
36
100
0
144
30
13
27
27
1.94
13141--13215
32
2.3
32
95
0
132
20
30
12
37
1.89
17355--17409
20
2.8
20
88
0
83
12
18
21
47
1.82
17422--17469
19
2.5
19
93
0
78
18
20
18
41
1.90
17581--17649
6
12.0
6
98
1
117
30
52
17
0
1.45
18140--18175
6
6.0
6
100
0
72
0
16
50
33
1.46
18284--18336
22
2.4
22
93
0
97
37
28
16
16
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18822--18881
29
2.1
28
84
9
77
43
5
8
43
1.56
27334--27396
23
2.8
23
87
2
83
23
31
20
23
1.98
30966--31024
23
2.6
23
83
0
73
30
23
27
18
1.98
31634--31681
20
2.4
20
92
0
78
29
25
16
29
1.97
37890--37921
11
2.9
11
100
0
64
43
9
37
9
1.69
42876--42971
48
2.0
48
100
0
192
27
12
12
47
1.77
49447--49472
12
2.2
12
100
0
52
50
0
0
50
1.00
49836--49883
19
2.5
19
75
3
60
50
0
2
47
1.12
51086--51123
19
2.1
18
90
5
58
52
0
2
44
1.14
51533--51580
24
2.0
24
87
0
69
60
4
12
22
1.49
54626--54690
34
1.9
33
87
9
96
47
3
0
49
1.17
63986--64026
17
2.4
17
95
0
73
21
21
34
21
1.97
66336--66380
21
2.1
21
87
0
63
31
28
24
15
1.96
68202--68246
23
2.0
23
86
0
63
20
26
26
26
1.99
71389--71433
21
2.1
21
83
0
54
31
26
24
17
1.97
84532--84651
35
3.3
36
89
5
181
43
20
5
31
1.73
84583--84643
21
3.2
21
65
29
64
42
21
4
31
1.74
84534--84678
35
4.1
36
83
11
142
41
19
6
33
1.76
88703--88733
15
2.0
16
93
6
55
32
22
6
38
1.80
89163--89225
22
3.2
22
62
29
59
46
15
3
34
1.62
89230--89290
21
3.2
21
65
29
64
42
21
4
31
1.74
89142--89298
37
4.3
37
91
4
232
43
19
4
32
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89142--89298
72
2.2
73
87
5
230
43
19
4
32
1.70
91692--91765
31
2.4
31
81
0
85
43
9
5
41
1.60
92180--92226
23
2.0
23
95
0
85
57
4
6
31
1.43
92340--92643
151
2.0
151
98
1
592
34
23
22
19
1.96
105872--106026
60
2.6
60
78
4
152
40
6
20
33
1.78
110909--111039
62
2.1
65
80
11
157
32
25
9
32
1.87
110928--111039
22
5.3
22
85
7
135
32
25
9
32
1.89
113848--114225
185
2.0
184
91
4
618
45
8
3
42
1.51
114319--114376
31
2.0
30
86
10
84
48
8
15
27
1.74
122501--122622
60
2.0
60
82
3
147
30
22
4
41
1.75
122651--122795
60
2.4
60
82
3
177
46
5
16
31
1.70
124814--124867
26
2.1
26
83
13
67
42
1
3
51
1.30
126993--127018
2
13.0
2
100
0
52
0
50
0
50
1.00
127018--127065
2
24.0
2
82
0
60
50
8
0
41
1.33
127019--127067
6
8.2
6
97
0
71
51
10
0
38
1.36
133882--133958
24
3.2
24
71
10
66
37
20
16
24
1.93
134265--134307
14
3.0
14
76
6
50
39
13
6
39
1.72
135183--135215
12
2.8
12
90
4
50
57
0
33
9
1.30
137012--137090
22
3.7
22
91
5
126
29
24
26
20
1.99
138421--138622
99
2.1
98
89
6
313
26
14
22
36
1.93

Tables:   1   

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