Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004986.1 Hibiscus syriacus cultivar Beakdansim tig00011186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 428355
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:205785 original size:22 final size:22
Alignment explanation
Indices: 205757--205807 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
205747 GCTAACCGGG
*
205757 TCGGGTCTGTTCTAGGTTGGAT
1 TCGGGTCTGTTCTAGGTCGGAT
205779 TCGGGTCTGTTCTAGGTCGGAT
1 TCGGGTCTGTTCTAGGTCGGAT
205801 TCGGGTC
1 TCGGGTC
205808 ATGTCGACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.08, C:0.18, G:0.37, T:0.37
Consensus pattern (22 bp):
TCGGGTCTGTTCTAGGTCGGAT
Found at i:205902 original size:9 final size:8
Alignment explanation
Indices: 205887--205928 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 8
205877 TATTTGATTA
205887 ATAATAAT
1 ATAATAAT
205895 ACTAATAAT
1 A-TAATAAT
205904 ATAATATAAT
1 AT-A-ATAAT
205914 ATAATAAT
1 ATAATAAT
205922 -TAATAAT
1 ATAATAAT
205929 TTTTTATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 7 0.23
8 7 0.23
9 10 0.32
10 7 0.23
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATAAT
Found at i:206392 original size:131 final size:131
Alignment explanation
Indices: 206206--206472 Score: 351
Period size: 131 Copynumber: 2.0 Consensus size: 131
206196 AACTTTAGGA
* * *
206206 AGGG-TGATAACATGGTTCCTACATGATGAGGACGACTGGTTATCTAGGGGTGACACGACTCGTA
1 AGGGATGATAACATGATTACTACATGATGAGGACGACTGGTTATCTAGGGGTGACACGACTCCTA
* * * * *
206270 CGTGATTAGGAGGTCAGGTTAGTGGATGACACGATTCATACT-TGATGAGGATGGT-AGGCCATC
66 CGTGATGAGGAGGTCAGGTCAGGGGATGACACGATTCATA-TGCGATGAGGAT-GTCAGACCATC
206333 TTT
129 TTT
* * *
206336 AGGGATGATAACATGATTATTACGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGACTCCTA
1 AGGGATGATAACATGATTACTACATGATGAGGACGACTGGTTATCTAGGGGTGACACGACTCCTA
* * * * *
206401 CGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTATGCGATGAGGATGTCTGACCATCTT
66 CGTGATGAGGAGGTCAGGTCAGGGGATGACACGATTCATATGCGATGAGGATGTCAGACCATCTT
206466 T
131 T
206467 AGGGAT
1 AGGGAT
206473 AATGGTTTTA
Statistics
Matches: 118, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
130 7 0.06
131 111 0.94
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (131 bp):
AGGGATGATAACATGATTACTACATGATGAGGACGACTGGTTATCTAGGGGTGACACGACTCCTA
CGTGATGAGGAGGTCAGGTCAGGGGATGACACGATTCATATGCGATGAGGATGTCAGACCATCTT
T
Found at i:206404 original size:43 final size:42
Alignment explanation
Indices: 206222--206419 Score: 116
Period size: 43 Copynumber: 4.5 Consensus size: 42
206212 ATAACATGGT
* *
206222 TCCTACATGATGAGGACGACTGGTTATCTAGGGGTGACACGAC
1 TCCTACGTGATGAGGA-GGCTGGTTATCTAGGGGTGACACGAC
* * * * * *
206265 TCGTACGTGATTAGGAGGTCAGGTTA-GT--GGATGACACGAT
1 TCCTACGTGATGAGGAGG-CTGGTTATCTAGGGGTGACACGAC
* * ** * * *
206305 TCATACTTGATGAGGATGG-TAGGCCATCTTTAGGGATGATAACATGAT
1 TCCTACGTGATGAGGA-GGCT-GGTTATC--TAGGG--G-TGACACGAC
**
206353 TATTACGTGATGAGGACGGCTGGTTATCTAGGGGTGACACGAC
1 TCCTACGTGATGAGGA-GGCTGGTTATCTAGGGGTGACACGAC
206396 TCCTACGTGATGAGGAGGTCTGGT
1 TCCTACGTGATGAGGAGG-CTGGT
206420 CGGGGGATGA
Statistics
Matches: 113, Mismatches: 29, Indels: 26
0.67 0.17 0.15
Matches are distributed among these distances:
40 26 0.23
41 2 0.02
42 4 0.04
43 45 0.40
44 1 0.01
45 2 0.02
46 5 0.04
48 27 0.24
49 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (42 bp):
TCCTACGTGATGAGGAGGCTGGTTATCTAGGGGTGACACGAC
Found at i:206819 original size:36 final size:36
Alignment explanation
Indices: 206778--206891 Score: 147
Period size: 36 Copynumber: 3.1 Consensus size: 36
206768 AGGAAAAATG
* * *
206778 TCTCAAGCGAGACAAAATTTGTTTTGAGAGAAATTC
1 TCTCAAGCGAGACAAAATTTGTTTTTAGAGAAACTA
* *
206814 TCTCAAGCGAGATAAAATTTGTTTTTAGCGAAAACTA
1 TCTCAAGCGAGACAAAATTTGTTTTTAGAG-AAACTA
* * *
206851 TCTCGAGCGAGACAAAATTCGTTTTTAGAGAAACAA
1 TCTCAAGCGAGACAAAATTTGTTTTTAGAGAAACTA
206887 TCTCA
1 TCTCA
206892 GAGACGACAG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
36 36 0.55
37 30 0.45
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (36 bp):
TCTCAAGCGAGACAAAATTTGTTTTTAGAGAAACTA
Found at i:208108 original size:19 final size:18
Alignment explanation
Indices: 208072--208114 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
208062 TGCATGTGAT
*
208072 TTTTATCTTTTTTATTTGC
1 TTTT-TCTTTTTTATTTGA
*
208091 TTTTTCTTTTGTTCTTTGA
1 TTTTTCTTTT-TTATTTGA
208110 TTTTT
1 TTTTT
208115 TGATTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.07, C:0.09, G:0.07, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTTTTATTTGA
Found at i:216202 original size:21 final size:21
Alignment explanation
Indices: 216146--216203 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
216136 TTTGGTGCAT
* **
216146 AGGGAATTAATA-CCCCCATG
1 AGGGAATCAATACCCCCCACA
* * *
216166 AGGGAACCGATTCCCCCCACA
1 AGGGAATCAATACCCCCCACA
216187 AGGGAATCAATACCCCC
1 AGGGAATCAATACCCCC
216204 TGGGATTCTG
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.33, C:0.34, G:0.19, T:0.14
Consensus pattern (21 bp):
AGGGAATCAATACCCCCCACA
Found at i:217966 original size:17 final size:17
Alignment explanation
Indices: 217933--217966 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
217923 TTGAATATTT
* *
217933 TGGATTGTTTGATTTTG
1 TGGATTGTTAGACTTTG
217950 TGGATTGTTAGACTTTG
1 TGGATTGTTAGACTTTG
217967 GATTTGTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.29, T:0.53
Consensus pattern (17 bp):
TGGATTGTTAGACTTTG
Found at i:221088 original size:31 final size:30
Alignment explanation
Indices: 221001--221106 Score: 104
Period size: 30 Copynumber: 3.5 Consensus size: 30
220991 ATCATATTCG
* * * *
221001 ATTTAAAGGACCAAAATAGCATAAATAGAA
1 ATTTAAAGGACTAAAACAGAAAAAATAGAA
* * * *
221031 ACTTAAAGGGCTAAAACAGAAAAAATATAT
1 ATTTAAAGGACTAAAACAGAAAAAATAGAA
**
221061 ATTTAAAGGACTAAAATGGAAAAAAATAGAA
1 ATTTAAAGGACTAAAACAG-AAAAAATAGAA
*
221092 ATTTAAAGGTCTAAA
1 ATTTAAAGGACTAAA
221107 CCTCAAATAT
Statistics
Matches: 60, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
30 37 0.62
31 23 0.38
ACGTcount: A:0.57, C:0.08, G:0.14, T:0.22
Consensus pattern (30 bp):
ATTTAAAGGACTAAAACAGAAAAAATAGAA
Found at i:222664 original size:3 final size:3
Alignment explanation
Indices: 222654--222705 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
222644 AATATTTGAT
* * *
222654 TAA T-A TAA TAA GAA TAA TAC TAA TAG TAA TAA TAA TAA T-A TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
222701 TAA TA
1 TAA TA
222706 TTTTTTGTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.82
4 3 0.08
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:223452 original size:22 final size:22
Alignment explanation
Indices: 223403--223453 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
223393 TCCAAGAGAG
*
223403 GCTTTAATCATACGGTATCAAA
1 GCTTTTATCATACGGTATCAAA
223425 GCTTTTATCATACGGTATCAAA
1 GCTTTTATCATACGGTATCAAA
223447 GCTTTTA
1 GCTTTTA
223454 GGTAATCAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (22 bp):
GCTTTTATCATACGGTATCAAA
Found at i:225119 original size:17 final size:17
Alignment explanation
Indices: 224973--225119 Score: 102
Period size: 17 Copynumber: 8.5 Consensus size: 17
224963 TTTAACTAAG
* *
224973 TAGTTCATTGATTAAAC
1 TAGTTCATTCATCAAAC
* *
224990 TAGCTCATTCATTAAAC
1 TAGTTCATTCATCAAAC
*
225007 TAGTT-ATTCTTCAAAC
1 TAGTTCATTCATCAAAC
*
225023 TAGTTCATTAAATCAAAC
1 TAGTTCATT-CATCAAAC
** *
225041 TAGTTCATTCAAGATTAC
1 TAGTTCATTCATCA-AAC
* * * *
225059 AAGTTCGTTGAAT-AAAGT
1 TAGTTCATT-CATCAAA-C
*
225077 TAGTTCA-TCAATTAAAC
1 TAGTTCATTC-ATCAAAC
225094 TAGTTCATTCATCAAAC
1 TAGTTCATTCATCAAAC
225111 TAGTTCATT
1 TAGTTCATT
225120 TAATAAACTA
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
16 14 0.14
17 50 0.50
18 35 0.35
19 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (17 bp):
TAGTTCATTCATCAAAC
Found at i:228713 original size:440 final size:439
Alignment explanation
Indices: 227682--229429 Score: 2998
Period size: 440 Copynumber: 4.0 Consensus size: 439
227672 AGAAATTTTT
* * * * * *
227682 GATGTGTTATTTTGGTATTGATATCGTCAATTCAATATCAATACTCCTTCATTATCAATACCATT
1 GATGTGCTATTTTGGTACTGATATCATCAATTCAGTATCAATACTCTTTCAGTATCAATACCATT
* *
227747 GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGTATCCAAAT
66 GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGCATCCAAAC
* *
227812 TTTCCAATATTGAAAGATTAGAAAAAAGTTCTATTATACTTGAATATCTATGAGTCGTAATTCAT
131 TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATACTTGAATATCTACGAGTCGTAATTCAT
*
227877 AAAATAACTAAAATACCCTCAGGTGATGCAAATTACCAAATACCCATAACACCTAATAAATAGGT
196 AAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATAGGT
227942 TTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGAA
261 TTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGAA
* *
228007 ACCAAAAATGTGTAAAAATGAAAACCTACTTGGGTGCTAAAATAA--AAAATAACCATAAGTTCT
326 ACCAAAAATGTGTAAAAATGAAAAACTACTTGGGTGCTAAAATAACCAAAATAACCTTAAGTTCT
228070 AAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAATGAGATTTC
391 AAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAATGAGATTTC
* * * *
228119 GATGTGTTATTTTGGTACTGATATAATCAATTCGGTATCAATACTCTTTCAGTATGAATACCATT
1 GATGTGCTATTTTGGTACTGATATCATCAATTCAGTATCAATACTCTTTCAGTATCAATACCATT
* * * *
228184 GAGTGAGTATCGGTACTAAAGTATCTATGCTCAATTATACATACTTTTTTGTTGAGCATCCAAAC
66 GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGCATCCAAAC
228249 TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATACTTGAATATCTACGAGTCGTAATTCAT
131 TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATACTTGAATATCTACGAGTCGTAATTCAT
*
228314 AAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATATGT
196 AAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATAGGT
*
228379 TTGATGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGAA
261 TTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGAA
* *
228444 ACCAAAACTGTGTAAAAATGAAAAACTAATTGGGGTGCTAAAATAACCAAAATAACCTTAAGTTC
326 ACCAAAAATGTGTAAAAATGAAAAACTACTT-GGGTGCTAAAATAACCAAAATAACCTTAAGTTC
* * *
228509 TAAAATTACTAAAATGTCTCCATGTGTAAAAATAACAAAAATGAGATTTC
390 TAAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAATGAGATTTC
* * *
228559 GATGTGCTATTTTGATACTGATATCATCAATTCGGTATCAATACTCTTTTAGTATCAATACCATT
1 GATGTGCTATTTTGGTACTGATATCATCAATTCAGTATCAATACTCTTTCAGTATCAATACCATT
* *
228624 GAGTGAGTATCGATACTCAAGTATCTATGCTCAATTATACATACTCTTTTGTTAAGCATCCAAAC
66 GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGCATCCAAAC
* *
228689 TTTCCAATGCTGAAAGATTAGAAAAAAGTTCTATTATACCTGAATATCTACGAGTCGTAATTCAT
131 TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATACTTGAATATCTACGAGTCGTAATTCAT
*
228754 AAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATATGT
196 AAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATAGGT
*
228819 TTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAGTGAA
261 TTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGAA
228884 ACCAAAAATGTGTAAAAATGAAAAACTACTTGGGGTGCTAAAATAACCAAAATAACCTTAAGTTC
326 ACCAAAAATGTGTAAAAATGAAAAACTACTT-GGGTGCTAAAATAACCAAAATAACCTTAAGTTC
* *
228949 TAAAATTACTAAAATGTCTCCATGTGTAAAAATAACCAAAATGAGATTTC
390 TAAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAATGAGATTTC
*
228999 GATGTTCTATTTTGGTACTGATATCATCAATTCAGTATCAATACTCTTTCAGTATCAATACCATT
1 GATGTGCTATTTTGGTACTGATATCATCAATTCAGTATCAATACTCTTTCAGTATCAATACCATT
*
229064 GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGTATCCAAAC
66 GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGCATCCAAAC
* *
229129 TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATA-TATGAATATCTACTAGTCCTAATTCA
131 TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATACT-TGAATATCTACGAGTCGTAATTCA
* * * *
229193 TAAAATAAATAAAATACCCTCAAGTGGTACAAATTACCAAATACCAATAACACCTAATAAATAGG
195 TAAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATAGG
* *
229258 TTTGATGGTCTAAAATATGTAGAATTGAGTAAAATATTCTCATGGTATATGAATGGGTCTAATGA
260 TTTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGA
*
229323 AACCAAAAATATGTAAAAATGAAAAACTACTTGGGTGCTAAAATAACCAAAATAACCTTAAGTTC
325 AACCAAAAATGTGTAAAAATGAAAAACTACTTGGGTGCTAAAATAACCAAAATAACCTTAAGTTC
229388 TAAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAAT
390 TAAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAAT
229430 ACACATGTGT
Statistics
Matches: 1243, Mismatches: 64, Indels: 6
0.95 0.05 0.00
Matches are distributed among these distances:
437 334 0.27
438 14 0.01
439 73 0.06
440 822 0.66
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (439 bp):
GATGTGCTATTTTGGTACTGATATCATCAATTCAGTATCAATACTCTTTCAGTATCAATACCATT
GAGTGAGTATCGATACTCAAGTATCTATACTCAATTATACATACTCTTTTGTTGAGCATCCAAAC
TTTCCAATGTTGAAAGATTAGAAAAAAGTTCTATTATACTTGAATATCTACGAGTCGTAATTCAT
AAAATAACTAAAATACCCTCAGGTGATACAAATTACCAAATACCCATAACACCTAATAAATAGGT
TTGAAGGTCTAAAATATGTAGAATTGAGTAAAATATTCTTATGGTATATGAATGGGTCTAATGAA
ACCAAAAATGTGTAAAAATGAAAAACTACTTGGGTGCTAAAATAACCAAAATAACCTTAAGTTCT
AAAATAACTAAAATGTCTCCATGTATAAAAATAACCAAAATGAGATTTC
Found at i:230577 original size:35 final size:35
Alignment explanation
Indices: 230534--230615 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
230524 TTCTATTTTT
* *
230534 TATATTTTTAAAGTATATCTTTGCATTATGTAATT
1 TATATTTTTAAAGTATATCTGTGCATTATGTAATA
* * * *
230569 TGA-ATTTTTAAATTTTATGTGTGGATTATGTAATA
1 T-ATATTTTTAAAGTATATCTGTGCATTATGTAATA
230604 TATATTTTTAAA
1 TATATTTTTAAA
230616 ATTTAAGTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 1 0.03
35 37 0.95
36 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (35 bp):
TATATTTTTAAAGTATATCTGTGCATTATGTAATA
Found at i:232244 original size:237 final size:241
Alignment explanation
Indices: 231948--232427 Score: 923
Period size: 241 Copynumber: 2.0 Consensus size: 241
231938 TCCAAAGCTG
231948 ACAAATAGTGAAAACCACCATATATTTTTATTTTATATTTTAAATTATTTTTATATTAAGTAATA
1 ACAAATAGTGAAAACCACCATATATTTTTATTTTATATTTTAAATTATTTTTATATTAAGTAATA
232013 ATAAAAAT-G-CG-TTTATCAAAATAATAATAAAATAATTCAGAGTGACCAAAATATGAGCAATT
66 ATAAAAATCGACGTTTTATCAAAATAATAATAAAATAATTCAGAGTGACCAAAATATGAGCAATT
232075 CGAAAGTTTAGTGAGTAAATTGGAAAAATTGAAAGTACAATGAGTGAAATAGAAGAAAGAGTAAA
131 CGAAAGTTTAGTGAGTAAATTGGAAAAATTGAAAGTACAATGAGTGAAATAGAAGAAAGAGTAAA
232140 TTTTAGTGAGGAATGATGTAGTTTACCCTTATTAAAAT-GGCATGT
196 TTTTAGTGAGGAATGATGTAGTTTACCCTTATTAAAATGGGCATGT
232185 ACAAATAGTGAAAACCACCATATATTTTTATTTTATATTTTAAATTATTTTTATATTAAGTAATA
1 ACAAATAGTGAAAACCACCATATATTTTTATTTTATATTTTAAATTATTTTTATATTAAGTAATA
232250 ATAAAAATGCGACGTTTTATCAAAATAATAATAAAATAATTCAGAGTGACCAAAATATGAGCAAT
66 ATAAAAAT-CGACGTTTTATCAAAATAATAATAAAATAATTCAGAGTGACCAAAATATGAGCAAT
232315 TCGAAAGTTTAGTGAGTAAATTGGAAAAATTGAAAGTACAATGAGTGAAATAGAAGAAAGAGTAA
130 TCGAAAGTTTAGTGAGTAAATTGGAAAAATTGAAAGTACAATGAGTGAAATAGAAGAAAGAGTAA
232380 ATTTTAGTGAGGAATGATGTAGTTTACCCTTATTAAAATGGGCATGT
195 ATTTTAGTGAGGAATGATGTAGTTTACCCTTATTAAAATGGGCATGT
232427 A
1 A
232428 AGGGTTGAAA
Statistics
Matches: 238, Mismatches: 0, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
237 73 0.31
239 1 0.00
240 2 0.01
241 154 0.65
242 8 0.03
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (241 bp):
ACAAATAGTGAAAACCACCATATATTTTTATTTTATATTTTAAATTATTTTTATATTAAGTAATA
ATAAAAATCGACGTTTTATCAAAATAATAATAAAATAATTCAGAGTGACCAAAATATGAGCAATT
CGAAAGTTTAGTGAGTAAATTGGAAAAATTGAAAGTACAATGAGTGAAATAGAAGAAAGAGTAAA
TTTTAGTGAGGAATGATGTAGTTTACCCTTATTAAAATGGGCATGT
Found at i:232706 original size:20 final size:20
Alignment explanation
Indices: 232638--232700 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 20
232628 AATATTTTAA
232638 ATAATTCAAATAATATATTTT
1 ATAATT-AAATAATATATTTT
* *
232659 ATAA-TAACTTATTATATTTTT
1 ATAATTAA-ATAATATA-TTTT
232680 ATAATTAAATAATATATTTT
1 ATAATTAAATAATATATTTT
232700 A
1 A
232701 ACATTATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
19 2 0.06
20 12 0.34
21 18 0.51
22 3 0.09
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATAATTAAATAATATATTTT
Found at i:232725 original size:9 final size:9
Alignment explanation
Indices: 232711--232750 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
232701 ACATTATAAA
232711 ATTAAAAAT
1 ATTAAAAAT
232720 ATTAAAAAT
1 ATTAAAAAT
*
232729 ATTAAATAT
1 ATTAAAAAT
*
232738 ATTATAAAT
1 ATTAAAAAT
232747 ATTA
1 ATTA
232751 TATAGGGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:232751 original size:9 final size:9
Alignment explanation
Indices: 232703--232752 Score: 59
Period size: 9 Copynumber: 5.7 Consensus size: 9
232693 ATATTTTAAC
232703 ATTATAAA-
1 ATTATAAAT
*
232711 ATTAAAAAT
1 ATTATAAAT
*
232720 ATTAAAAAT
1 ATTATAAAT
232729 ATTA-AATAT
1 ATTATAA-AT
232738 ATTATAAAT
1 ATTATAAAT
232747 ATTATA
1 ATTATA
232753 TAGGGTAGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
8 9 0.24
9 27 0.71
10 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTATAAAT
Found at i:232895 original size:18 final size:19
Alignment explanation
Indices: 232872--232908 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
232862 TGGAAGCCTC
232872 AGAATGATAAGA-TTGAAA
1 AGAATGATAAGATTTGAAA
232890 AGAATGATAAGATTTGAAA
1 AGAATGATAAGATTTGAAA
232909 TAAGGTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (19 bp):
AGAATGATAAGATTTGAAA
Found at i:233424 original size:35 final size:35
Alignment explanation
Indices: 233376--233555 Score: 184
Period size: 35 Copynumber: 5.1 Consensus size: 35
233366 AACATCATGA
* * * *
233376 CTTTTGATAAAGCATTGTGCCTCGTGGAAAAGTAC
1 CTTTTGATGAAGCATTGTGCCTCTTGGAAAGGAAC
* *
233411 CTTTTGATGAAGCATCGTGTCC-CTTGGAAAGGCAC
1 CTTTTGATGAAGCATTGTG-CCTCTTGGAAAGGAAC
* * *
233446 CTTTTGAT-CAGACATTGTGTCTCTTGGAAAGGCAC
1 CTTTTGATGAAG-CATTGTGCCTCTTGGAAAGGAAC
* * * *
233481 CTTTTGGTGAAGCATCGTGTCTCTTTGAAAAGGAAC
1 CTTTTGATGAAGCATTGTGCCTC-TTGGAAAGGAAC
* *
233517 CTTTTGATGAAGCATTATGCCACTTGGAAAGGAAC
1 CTTTTGATGAAGCATTGTGCCTCTTGGAAAGGAAC
233552 CTTT
1 CTTT
233556 GTTAAATGGT
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
34 3 0.02
35 86 0.71
36 32 0.26
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (35 bp):
CTTTTGATGAAGCATTGTGCCTCTTGGAAAGGAAC
Found at i:233846 original size:2 final size:2
Alignment explanation
Indices: 233830--233871 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
233820 GTATAAAAAC
*
233830 AT AT AT -T AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
233870 AT
1 AT
233872 GAATGTGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:236036 original size:17 final size:17
Alignment explanation
Indices: 236014--236153 Score: 67
Period size: 17 Copynumber: 8.1 Consensus size: 17
236004 AATTAAGATT
236014 TAGTTTAATACATGAAC
1 TAGTTTAATACATGAAC
*
236031 TAGTTTGATGA-ATGAAC
1 TAGTTTAAT-ACATGAAC
** *
236048 TAGTTTAATTGATAAAC
1 TAGTTTAATACATGAAC
* * *
236065 TAATTTTATTCAATGAAC
1 TAGTTTAATAC-ATGAAC
* *
236083 T--TGTAATCCTGAATGAAC
1 TAGTTTAATAC---ATGAAC
*
236101 TAGTTTGATGA-ATGAAC
1 TAGTTTAAT-ACATGAAC
*
236118 CAGTTTAAT-CAATGAAC
1 TAGTTTAATAC-ATGAAC
236135 TAGTTTAATTA-ATGAAC
1 TAGTTTAA-TACATGAAC
236152 TA
1 TA
236154 CTTAGTTAAA
Statistics
Matches: 94, Mismatches: 17, Indels: 24
0.70 0.13 0.18
Matches are distributed among these distances:
16 5 0.05
17 69 0.73
18 16 0.17
20 4 0.04
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (17 bp):
TAGTTTAATACATGAAC
Found at i:236115 original size:35 final size:33
Alignment explanation
Indices: 236025--236153 Score: 98
Period size: 34 Copynumber: 3.8 Consensus size: 33
236015 AGTTTAATAC
*
236025 ATGAACTAGTTTGATGAATGAACTAGTTTAATTG
1 ATGAACTAGTTTGATGAATGAACTA-TGTAATTG
* * * *
236059 ATAAACTAATTTTATTCAATGAACT-TGTAATCCTG
1 ATGAACTAGTTTGA-TGAATGAACTATGTAAT--TG
* * **
236094 AATGAACTAGTTTGATGAATGAACCAGTTTAATCA
1 -ATGAACTAGTTTGATGAATGAACTA-TGTAATTG
* *
236129 ATGAACTAGTTTAATTAATGAACTA
1 ATGAACTAGTTTGATGAATGAACTA
236154 CTTAGTTAAA
Statistics
Matches: 73, Mismatches: 16, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
33 5 0.07
34 33 0.45
35 19 0.26
36 11 0.15
37 5 0.07
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (33 bp):
ATGAACTAGTTTGATGAATGAACTATGTAATTG
Found at i:240533 original size:17 final size:17
Alignment explanation
Indices: 240511--240577 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
240501 CATTAAGAGT
*
240511 TAGTTTGATTAATGCAC
1 TAGTTTGATTAATGAAC
* *
240528 TAGTTT-AGTAAGTTAAC
1 TAGTTTGATTAA-TGAAC
240545 TAGTTTGATTAATGAAC
1 TAGTTTGATTAATGAAC
*
240562 TAACTTT-ATTAATGAA
1 T-AGTTTGATTAATGAA
240578 ATAAAAGCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
16 4 0.10
17 29 0.71
18 8 0.20
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (17 bp):
TAGTTTGATTAATGAAC
Found at i:240670 original size:17 final size:17
Alignment explanation
Indices: 240648--240688 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
240638 AAATGAAATA
240648 CATGCTTAATTGCAATG
1 CATGCTTAATTGCAATG
*
240665 CATGCTTAATTGTAATG
1 CATGCTTAATTGCAATG
240682 CATGCTT
1 CATGCTT
240689 TAATGAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (17 bp):
CATGCTTAATTGCAATG
Found at i:244661 original size:34 final size:34
Alignment explanation
Indices: 244621--244688 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
244611 TTAAGAGTTT
**
244621 GTTTGATTAATTCACTAA-TTTAATAAATGAACTA
1 GTTTGATTAATGAACTAACTTT-ATAAATGAACTA
*
244655 GTTTGATTAATGAACTAACTTTATTAATGAACTA
1 GTTTGATTAATGAACTAACTTTATAAATGAACTA
244689 AATGCATGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 27 0.90
35 3 0.10
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (34 bp):
GTTTGATTAATGAACTAACTTTATAAATGAACTA
Found at i:244689 original size:17 final size:18
Alignment explanation
Indices: 244622--244689 Score: 70
Period size: 17 Copynumber: 3.9 Consensus size: 18
244612 TAAGAGTTTG
**
244622 TTTGATTAATTCACTAA-
1 TTTGATTAATGAACTAAC
* * *
244639 TTTAATAAATGAACT-AG
1 TTTGATTAATGAACTAAC
244656 TTTGATTAATGAACTAAC
1 TTTGATTAATGAACTAAC
244674 TTT-ATTAATGAACTAA
1 TTTGATTAATGAACTAA
244690 ATGCATGAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
16 1 0.02
17 37 0.88
18 4 0.10
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (18 bp):
TTTGATTAATGAACTAAC
Found at i:246510 original size:22 final size:22
Alignment explanation
Indices: 246482--246523 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
246472 TGGAAGACTC
246482 TTGTTATTCCATGCTGAAAATT
1 TTGTTATTCCATGCTGAAAATT
246504 TTGTTATTCCATGCTGAAAA
1 TTGTTATTCCATGCTGAAAA
246524 GTGTCTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (22 bp):
TTGTTATTCCATGCTGAAAATT
Found at i:247035 original size:17 final size:17
Alignment explanation
Indices: 247013--247082 Score: 77
Period size: 17 Copynumber: 4.1 Consensus size: 17
247003 AATTAAGAGT
*
247013 TAGTTTTATTAATGCAC
1 TAGTTTTATTAATGAAC
* *
247030 TAGTTTAATAAATGAAC
1 TAGTTTTATTAATGAAC
*
247047 TAGTTTGATTAATGAAC
1 TAGTTTTATTAATGAAC
** *
247064 TAACTTTATTAATAAAC
1 TAGTTTTATTAATGAAC
247081 TA
1 TA
247083 TATGCATGGA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 44 1.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (17 bp):
TAGTTTTATTAATGAAC
Found at i:247159 original size:17 final size:17
Alignment explanation
Indices: 247139--247180 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
247129 AGTACTTCCC
247139 TAAATGAAATACATGCT
1 TAAATGAAATACATGCT
* *
247156 TAAATGCAATGCATGCT
1 TAAATGAAATACATGCT
*
247173 TTAATGAA
1 TAAATGAA
247181 CAACGCACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (17 bp):
TAAATGAAATACATGCT
Found at i:257073 original size:21 final size:22
Alignment explanation
Indices: 257022--257075 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
257012 ACAAAAGAGT
*
257022 ACAAAAGCAAAAAGAAGAAACACA
1 ACAAAAG--AAAAGAAGAAACAAA
**
257046 AGGAAAGAAAAGAA-AAACAAA
1 ACAAAAGAAAAGAAGAAACAAA
257067 ACAAAAGAA
1 ACAAAAGAA
257076 GGCTCATTGC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 13 0.52
22 7 0.28
24 5 0.20
ACGTcount: A:0.74, C:0.11, G:0.15, T:0.00
Consensus pattern (22 bp):
ACAAAAGAAAAGAAGAAACAAA
Found at i:278762 original size:191 final size:191
Alignment explanation
Indices: 278440--278825 Score: 731
Period size: 191 Copynumber: 2.0 Consensus size: 191
278430 TGTTTATGTC
278440 GATGCAAGTGACTAAAATGTAGGGCAGTGCTAGGAAATAAAAGTAAAATCTTCCATGTCATCTAT
1 GATGCAAGTGACTAAAATGTAGGGCAGTGCTAGGAAATAAAAGTAAAATCTTCCATGTCATCTAT
278505 TATGTTAGCCATACCCTTAATGATACACAACTTAATTATACCACCACTAAAAAGAATTGCTTCTC
66 TATGTTAGCCATACCCTTAATGATACACAACTTAATTATACCACCACTAAAAAGAATTGCTTCTC
278570 G-TATTCGCTTTTGATAAGTTTAGAGCATACC-TATAGAAACTAAGGACATTGTACATACT
131 GATATTCGCTTTTGATAAGTTTAGAGCATACCTTATAGAAACTAAGGACATTGTACATACT
278629 GATGCAAGTGACTAAAATGTAGGGGCAGTGCTAGGGAAATAAAAGTAAAATCTTCCATGTCATCT
1 GATGCAAGTGACTAAAATGTA-GGGCAGTGCTA-GGAAATAAAAGTAAAATCTTCCATGTCATCT
278694 ATTATGTTAGCCATACCCTTAATGATACACAACTTAATTATACCACCACTAAAAAGAATTGCTTC
64 ATTATGTTAGCCATACCCTTAATGATACACAACTTAATTATACCACCACTAAAAAGAATTGCTTC
278759 TCGTATATTCGCTTTTGATAAGTTTAGAGCATACCTTATAGAAACTAAGGACATTGTACATACT
129 TCG-ATATTCGCTTTTGATAAGTTTAGAGCATACCTTATAGAAACTAAGGACATTGTACATACT
278823 GAT
1 GAT
278826 CACTCTGTCA
Statistics
Matches: 192, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
189 21 0.11
190 11 0.06
191 99 0.52
193 30 0.16
194 31 0.16
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (191 bp):
GATGCAAGTGACTAAAATGTAGGGCAGTGCTAGGAAATAAAAGTAAAATCTTCCATGTCATCTAT
TATGTTAGCCATACCCTTAATGATACACAACTTAATTATACCACCACTAAAAAGAATTGCTTCTC
GATATTCGCTTTTGATAAGTTTAGAGCATACCTTATAGAAACTAAGGACATTGTACATACT
Found at i:279928 original size:73 final size:73
Alignment explanation
Indices: 279809--279955 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
279799 ACTAGAACAC
279809 AAGGCAATCTATGCCATCAAGAAACTTAATATGGATCCGTAGCTTGCTAGGGAAAGGCGATTGTT
1 AAGGCAATCTATGCCATCAAGAAACTTAATATGGATCCGTAGCTTGCTAGGGAAAGGCGATTGTT
279874 GGAGCTAA
66 GGAGCTAA
279882 AAGGCAATCTATGCCATCAAGAAACTTAATATGGATCCGTAGCTTGCTAGGGAAAGGCGATTGTT
1 AAGGCAATCTATGCCATCAAGAAACTTAATATGGATCCGTAGCTTGCTAGGGAAAGGCGATTGTT
279947 GGAGCTAA
66 GGAGCTAA
279955 A
1 A
279956 CGATATGGAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.24
Consensus pattern (73 bp):
AAGGCAATCTATGCCATCAAGAAACTTAATATGGATCCGTAGCTTGCTAGGGAAAGGCGATTGTT
GGAGCTAA
Found at i:284123 original size:380 final size:379
Alignment explanation
Indices: 283404--284499 Score: 1328
Period size: 380 Copynumber: 2.9 Consensus size: 379
283394 TTGTTTCTCT
* * * *
283404 TTCACTCACTTTCTTCTTCATCTTTTATTTTA-CCTTTGATTTTTCATATTTCCTCAAACAACTC
1 TTCACTCACTTTCTTCTTCAACTTTT-CTTTAGCCTTTGATTTTTCAT-TTTCCACAAACACCTC
* * * *
283468 CATT-TTTACCATCC-AAAT-CTTGTTATTTCCATTAAACATGTCATGGCTCGATCTAAGTCAAC
64 CATTATTT-TCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAAC
* * * * * * * * *
283530 CTCTGGTGCTTTCACCTCGTCCACTGCTGCAACAGGCTTCTAGCGCTTCCAGAGTGCTGAGGCCA
128 CTCTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCG
*
283595 AGAACAAATTTAAGGTGTTGTAG-AACGCCAAGTCTACCTGGAAGTA-GGCTTTGTATTTCCTAA
193 AGAACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAA-CACGGCTTTGTA-TTCCT-A
* * * * *
283658 GGTCAATGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATTCGGCAACACAACTGGAAGAAAT
255 GGCCAACGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGAAACACAACTGGGAGAAAT
* * * *
283723 TTTCCAAGCACCCAAAGGCGATGACACCAGCGTTGGT-TCGGGCTCTTTCA-CCATT-TCACA
320 TGTCCAAGCACCCAAAGGCGATGACACCAACGCTAGTCT-GGGCTCTTTCATCCATTAT-A-A
283783 TTCACTCACTTT-TTCTTCAACTTTTCTTTAGCCTTTGATTTTTCATCTTTCCACAAACACCTCC
1 TTCACTCACTTTCTTCTTCAACTTTTCTTTAGCCTTTGATTTTTCAT-TTTCCACAAACACCTCC
* *
283847 ATTATTTTCATCCAAAATCCTTTTTCTCTCAATTAAACATGTCATGGCTCGATCTAAGTCAACCT
65 ATTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAACCT
283912 CTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAG
130 CTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAG
* * * *
283977 AATAAATTTAAGGTGTTGTAGAAATGTCAAGTCTACCTGGAACACGGCTTTATATTCCTTGAGGC
195 AACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAACACGGCTTTGTATTCC-T-AGGC
* * *
284042 CGACGAGGAACCTTTTGGGCCTGAGGTGATGAACATCATCCGGAAATACAACTGGGAGAAATTGT
258 CAACGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGAAACACAACTGGGAGAAATTGT
* * * * * *
284107 CCAA-CATCCGAAGGCGATGGCCCCAACGCTAGTCTGGGCTCTTTCATCGATTATAT
323 CCAAGCACCCAAAGGCGATGACACCAACGCTAGTCTGGGCTCTTTCATCCATTATAA
* * * * *
284163 TTCACTCACTTTCTTCTTC-A-TATTTCTTT-GCCCTTGATTCTTCATATTCCCCAAAAACCTCC
1 TTCACTCACTTTCTTCTTCAACT-TTTCTTTAGCCTTTGATTTTTCATTTTCCACAAACACCTCC
* * * *
284225 ATTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACCTCTCATGGCTCGATCCAAGTCAACCC
65 ATTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAACCT
* * * * *
284290 CTGGTGTTTCCACCTTGTCCACCACTGTAACAAGCTT-CAGTGCTTCCAAAGTACT-AAGCTGAG
130 CTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAG
* * * * * *
284353 AACGAATTTAAGGTGTTGCAGAAACACCAAGTCTATCTGGAAGACGACTTTGTATTCCCTATGGC
195 AACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAACACGGCTTTGTATT-CCTA-GGC
*
284418 CAACGAGGAAACTTTTGGGCCTGAGGTGATGGACATCATCC-GATAACACAACTGGGAGAAAATT
258 CAACGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGA-AACACAACTGGGAG-AAATT
* *
284482 -TTCTAGCACCCAAAGGCG
321 GTCCAAGCACCCAAAGGCG
284500 GTGGCTCCAG
Statistics
Matches: 623, Mismatches: 77, Indels: 36
0.85 0.10 0.05
Matches are distributed among these distances:
375 3 0.00
376 110 0.18
377 38 0.06
378 158 0.25
379 34 0.05
380 176 0.28
381 103 0.17
382 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (379 bp):
TTCACTCACTTTCTTCTTCAACTTTTCTTTAGCCTTTGATTTTTCATTTTCCACAAACACCTCCA
TTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAACCTC
TGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAGA
ACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAACACGGCTTTGTATTCCTAGGCCAA
CGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGAAACACAACTGGGAGAAATTGTCCA
AGCACCCAAAGGCGATGACACCAACGCTAGTCTGGGCTCTTTCATCCATTATAA
Found at i:308854 original size:32 final size:32
Alignment explanation
Indices: 308808--308873 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
308798 CTCCACTTCC
*
308808 AACTTGAGGGGGCGTAAAGACATAATCATTTG
1 AACTCGAGGGGGCGTAAAGACATAATCATTTG
308840 AACTCGAGGGGGCGTAAAGACATAATCATTTG
1 AACTCGAGGGGGCGTAAAGACATAATCATTTG
308872 AA
1 AA
308874 TTTCAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (32 bp):
AACTCGAGGGGGCGTAAAGACATAATCATTTG
Found at i:311437 original size:11 final size:11
Alignment explanation
Indices: 311421--311445 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
311411 ATATCATAAC
311421 TATCATGACAA
1 TATCATGACAA
311432 TATCATGACAA
1 TATCATGACAA
311443 TAT
1 TAT
311446 AATAAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (11 bp):
TATCATGACAA
Found at i:314145 original size:42 final size:42
Alignment explanation
Indices: 314083--314165 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
314073 TTCCTTTCGC
**
314083 TTCTCCTCCGTCTTTGCCTTCCTTT-AGCTTCTCCTCAAGCTG
1 TTCTCCTCCGTCTTCACCTTCCTTTCA-CTTCTCCTCAAGCTG
* *
314125 TTCTCCTCTGTCTTCACCTTCCTTTCACTTCTCCTCTAGCT
1 TTCTCCTCCGTCTTCACCTTCCTTTCACTTCTCCTCAAGCT
314166 CTACCAACCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.07, C:0.40, G:0.08, T:0.45
Consensus pattern (42 bp):
TTCTCCTCCGTCTTCACCTTCCTTTCACTTCTCCTCAAGCTG
Found at i:315310 original size:41 final size:41
Alignment explanation
Indices: 315260--315361 Score: 116
Period size: 41 Copynumber: 2.5 Consensus size: 41
315250 ATATTGCTAA
* *
315260 AGGTTCCTATTTGGCTCTAGCAGAATGGAG-AAAATTACTAG
1 AGGTGCCTATTTGGCTCTAGCAGAA-GAAGAAAAATTACTAG
* ** * *
315301 AGGTGCCTATTTGGTTAGAGTAGAAGAAGAAAAATTATTAG
1 AGGTGCCTATTTGGCTCTAGCAGAAGAAGAAAAATTACTAG
*
315342 AGGTGCCTATCTGGCTCTAG
1 AGGTGCCTATTTGGCTCTAG
315362 TAAAAAATTA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
40 3 0.06
41 46 0.94
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (41 bp):
AGGTGCCTATTTGGCTCTAGCAGAAGAAGAAAAATTACTAG
Found at i:315386 original size:34 final size:34
Alignment explanation
Indices: 315330--315436 Score: 88
Period size: 34 Copynumber: 3.1 Consensus size: 34
315320 GTAGAAGAAG
* * *
315330 AAAAATTATTAGAGGTGCCTATCTGGCTCTAGTA
1 AAAAATTACTAAAAGTGCCTATCTGGCTCTAGTA
* * * *
315364 AAAAATTACTAAAAGTGTCTATCTGGTTCTAATT
1 AAAAATTACTAAAAGTGCCTATCTGGCTCTAGTA
* ** * * * *
315398 GAAAATTGTTAGAGGTGCCTATCTGTCTCTAATA
1 AAAAATTACTAAAAGTGCCTATCTGGCTCTAGTA
315432 AAAAA
1 AAAAA
315437 AAAAAGGTTA
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (34 bp):
AAAAATTACTAAAAGTGCCTATCTGGCTCTAGTA
Found at i:328127 original size:382 final size:379
Alignment explanation
Indices: 327405--328507 Score: 1366
Period size: 382 Copynumber: 2.9 Consensus size: 379
327395 TTGTTTCTCT
* * * *
327405 TTCACTCACTTTCTTCTTCATCTTTTATTTTA-CCTTTGATTTTTCATATTTCCTCAAACAACTC
1 TTCACTCACTTTCTTCTTCAACTTTT-CTTTAGCCTTTGATTTTTCAT-TTTCCACAAACACCTC
* * * *
327469 CATT-TTTACCATCC-AAAT-CTTGTTATTTCCATTAAACATGTCATGGCTCGATCTAAGTCAAC
64 CATTATTT-TCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAAC
* * * * * * * * *
327531 CTCTGGTGCTTTCACCTCGTCCACTGCTGCAACAGGCTTCTAGCGCTTCCAGAGTGCTGAGGCCA
128 CTCTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCG
*
327596 AGAACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAAGTA-GGCTTTGTATTTCCTAA
193 AGAACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAA-CACGGCTTTGTA-TTCCT-A
* * * * *
327660 GGTCAATGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATTCGGCAACACAACTGGAAGAAAT
255 GGCCAACGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGAAACACAACTGGGAGAAAT
* * *
327725 TTTCCAAGCACCCAAAGGCGATGACACCAGCGTTGGT-TCGGGCTCTTTCA-CCATT-TCACA
320 TTTCCAAGCACCCAAAGGCGATGACACCAACGCTAGTCT-GGGCTCTTTCATCCATTAT-A-A
*
327785 TTCACTCACTTTTTTCTTCAACTTTTCTTTAGCCTTTGATTTTTCATCTTTCCACAAACACCTCC
1 TTCACTCACTTTCTTCTTCAACTTTTCTTTAGCCTTTGATTTTTCAT-TTTCCACAAACACCTCC
* *
327850 ATTATTTTCATCCAAAATCCTTTTTCTCTCAATTAAACATGTCATGGCTCGATCTAAGTCAACCT
65 ATTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAACCT
327915 CTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAG
130 CTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAG
* * * *
327980 AATAAATTTAAGGTGTTGTAGAAATGTCAAGTCTACCTGGAACACGGCTTTATATTCCTTGAGGC
195 AACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAACACGGCTTTGTATTCC-T-AGGC
* * *
328045 CGACGAGGAACCTTTTGGGCCTGAGGTGATGAACATCATCCGGAAATACAACTGGGAGAAATTTG
258 CAACGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGAAACACAACTGGGAGAAATTT-
* * * * * *
328110 TCCAA-CATCCGAAGGCGATGGCCCCAACGCTAGTCTGGGCTCTTTCATCGATTATAT
322 TCCAAGCACCCAAAGGCGATGACACCAACGCTAGTCTGGGCTCTTTCATCCATTATAA
* * * * * *
328167 TTCACTCACTTTCTTCTTCATA-TTTTCTTTTGCCCTTGATTCTTCATATTCCCCAAAAACCTCC
1 TTCACTCACTTTCTTCTTCA-ACTTTTCTTTAGCCTTTGATTTTTCATTTTCCACAAACACCTCC
* * * *
328231 ATTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACCTCTCATGGCTCGATCCAAGTCAACCC
65 ATTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAACCT
* * * * * *
328296 CTGGTGTTTCCACCTTGTCCACCACTGTAACAAGCTTTCAGTGCTTCCAAAGTACTAAGGCTGAG
130 CTGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAG
* * * * * *
328361 AACGAATTTAAGGTGTTGCAGAAACACCAAGTCTATCTGGAAGACGACTTTGTATTCCCTATGGC
195 AACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAACACGGCTTTGTATT-CCTA-GGC
*
328426 CAACGAGGAAACTTTTGGGCCTGAGGTGATGGACATCATCC-GATAACACAACTGGGAGAAAATT
258 CAACGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGA-AACACAACTGGGAG-AAATT
*
328490 TT-CTAGCACCCAAAGGCG
321 TTCCAAGCACCCAAAGGCG
328508 GTGGCTCCAG
Statistics
Matches: 628, Mismatches: 79, Indels: 31
0.85 0.11 0.04
Matches are distributed among these distances:
379 4 0.01
380 67 0.11
381 256 0.41
382 288 0.46
383 12 0.02
384 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (379 bp):
TTCACTCACTTTCTTCTTCAACTTTTCTTTAGCCTTTGATTTTTCATTTTCCACAAACACCTCCA
TTATTTTCATCCAAAATCCTTATTCTCTCCATTAAACATGTCATGGCTCGATCTAAGTCAACCTC
TGGTGCTTCCACCTTGTCCACCGCTGTAACAAGCTTCCAGTGCTTCCAAAGTGCTGAGGCCGAGA
ACAAATTTAAGGTGTTGTAGAAACGCCAAGTCTACCTGGAACACGGCTTTGTATTCCTAGGCCAA
CGAGGAACCTTTTGGGCCTGAGGTGATGGACATCATCCGGAAACACAACTGGGAGAAATTTTCCA
AGCACCCAAAGGCGATGACACCAACGCTAGTCTGGGCTCTTTCATCCATTATAA
Found at i:352865 original size:32 final size:32
Alignment explanation
Indices: 352819--352884 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
352809 CTCCACTTCC
*
352819 AACTTGAGGGGGCGTAAAGACATAATCATTTG
1 AACTCGAGGGGGCGTAAAGACATAATCATTTG
352851 AACTCGAGGGGGCGTAAAGACATAATCATTTG
1 AACTCGAGGGGGCGTAAAGACATAATCATTTG
352883 AA
1 AA
352885 TTTCAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (32 bp):
AACTCGAGGGGGCGTAAAGACATAATCATTTG
Found at i:355394 original size:11 final size:11
Alignment explanation
Indices: 355378--355402 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
355368 ATATCATAAC
355378 TATCATGACAA
1 TATCATGACAA
355389 TATCATGACAA
1 TATCATGACAA
355400 TAT
1 TAT
355403 AATAAAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (11 bp):
TATCATGACAA
Found at i:357494 original size:42 final size:43
Alignment explanation
Indices: 357426--357508 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 43
357416 AAAATATATT
357426 TGATAATACAATAAATTAGAAACATGAATTAAGCGGTTTTTTA
1 TGATAATACAATAAATTAGAAACATGAATTAAGCGGTTTTTTA
357469 TGATAATACAAT-AATTAGAAACATGAATTAAGCGGTTTTT
1 TGATAATACAATAAATTAGAAACATGAATTAAGCGGTTTTT
357509 ATGTAAGCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 28 0.70
43 12 0.30
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.35
Consensus pattern (43 bp):
TGATAATACAATAAATTAGAAACATGAATTAAGCGGTTTTTTA
Found at i:358105 original size:42 final size:42
Alignment explanation
Indices: 358043--358125 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
358033 TTCCTTTCGC
**
358043 TTCTCCTCCGTCTTTGCCTTCCTTT-AGCTTCTCCTCAAGCTG
1 TTCTCCTCCGTCTTCACCTTCCTTTCA-CTTCTCCTCAAGCTG
* *
358085 TTCTCCTCTGTCTTCACCTTCCTTTCACTTCTCCTCTAGCT
1 TTCTCCTCCGTCTTCACCTTCCTTTCACTTCTCCTCAAGCT
358126 CTACCAACCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.07, C:0.40, G:0.08, T:0.45
Consensus pattern (42 bp):
TTCTCCTCCGTCTTCACCTTCCTTTCACTTCTCCTCAAGCTG
Found at i:359312 original size:32 final size:33
Alignment explanation
Indices: 359276--359379 Score: 111
Period size: 34 Copynumber: 3.2 Consensus size: 33
359266 GTAGAAGAAG
*
359276 AAAAATTATTAGAGGTGCCTA-CTGGCTCTAGT
1 AAAAATTATTAGAGGTGCCTATCTGGCTCTAAT
* * * * *
359308 AAAAATTACTAAAAGTGTCTATCTGGTTCTAATT
1 AAAAATTATTAGAGGTGCCTATCTGGCTCTAA-T
* * *
359342 GAAAATTGTTAGAGGTGCCTATCTGTCTCTAAT
1 AAAAATTATTAGAGGTGCCTATCTGGCTCTAAT
359375 AAAAA
1 AAAAA
359380 AAAAAAGGTT
Statistics
Matches: 55, Mismatches: 15, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
32 17 0.31
33 13 0.24
34 25 0.45
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (33 bp):
AAAAATTATTAGAGGTGCCTATCTGGCTCTAAT
Found at i:372820 original size:14 final size:14
Alignment explanation
Indices: 372801--372831 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
372791 GGGCCGAGGG
372801 TACCGGATGAACAA
1 TACCGGATGAACAA
372815 TACCGGATGAACAA
1 TACCGGATGAACAA
372829 TAC
1 TAC
372832 TGATACTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (14 bp):
TACCGGATGAACAA
Found at i:373494 original size:23 final size:23
Alignment explanation
Indices: 373451--373494 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
373441 GAGTTATGTG
* *
373451 TGATATGTTATTCTATGTGATCA
1 TGATATGTTATTATATATGATCA
373474 TGATATG-TATGTATATATGAT
1 TGATATGTTAT-TATATATGAT
373495 AATAAGACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.30, C:0.05, G:0.18, T:0.48
Consensus pattern (23 bp):
TGATATGTTATTATATATGATCA
Found at i:374093 original size:23 final size:23
Alignment explanation
Indices: 374067--374110 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
374057 ACGCAGTCCT
* *
374067 TCAGGATAATTCTATGTGGTCTA
1 TCAGGACAATTCTACGTGGTCTA
*
374090 TCAGGACATTTCTACGTGGTC
1 TCAGGACAATTCTACGTGGTC
374111 CTTTGGGACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (23 bp):
TCAGGACAATTCTACGTGGTCTA
Found at i:374395 original size:2 final size:2
Alignment explanation
Indices: 374388--374489 Score: 204
Period size: 2 Copynumber: 51.0 Consensus size: 2
374378 ATAGGAGGTA
374388 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
374430 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
374472 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
374490 TAATTGGTTG
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 100 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:376312 original size:2 final size:2
Alignment explanation
Indices: 376305--376347 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
376295 TTATTCATCT
*
376305 TA TA TA TA TA TA TA TA TA TA TA TA TA -A T- TG TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
376345 TA T
1 TA T
376348 TATCCATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:380198 original size:44 final size:44
Alignment explanation
Indices: 380128--380236 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
380118 CTTTTTTCTA
* * * *
380128 GATTCTATAACATAAAGAGTTGGATCAGCATC-ACTCTTTTGCTC
1 GATTCTATCACATAAAGAGGTAGATCAGCATCAAC-ATTTTGCTC
* *
380172 GATTCTATCACATAATA-AGGTAGATCATCATCAACATTTTGTTC
1 GATTCTATCACATAA-AGAGGTAGATCAGCATCAACATTTTGCTC
380216 GATTCTATCACA-AAAGGAGGT
1 GATTCTATCACATAAA-GAGGT
380237 GTCATTTTGC
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
42 1 0.02
43 2 0.04
44 49 0.89
45 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (44 bp):
GATTCTATCACATAAAGAGGTAGATCAGCATCAACATTTTGCTC
Found at i:380588 original size:10 final size:10
Alignment explanation
Indices: 380573--380611 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
380563 ATTAGTTGAT
380573 AAAAAATGAA
1 AAAAAATGAA
380583 AAAAAATGAATGA
1 AAAAAATG-A--A
380596 AAAAAATGAA
1 AAAAAATGAA
380606 AAAAAA
1 AAAAAA
380612 AATTGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 15 0.58
11 1 0.04
12 1 0.04
13 9 0.35
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:380618 original size:13 final size:12
Alignment explanation
Indices: 380573--380620 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 12
380563 ATTAGTTGAT
380573 AAAAAATG--AA
1 AAAAAATGAAAA
*
380583 AAAAAATGAATGA
1 AAAAAATGAA-AA
380596 AAAAAATGAAAA
1 AAAAAATGAAAA
380608 AAAAAATTGAAAA
1 AAAAAA-TGAAAA
380621 TGATGAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 8 0.25
12 7 0.22
13 17 0.53
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.12
Consensus pattern (12 bp):
AAAAAATGAAAA
Found at i:380618 original size:22 final size:23
Alignment explanation
Indices: 380568--380636 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
380558 CAAAGATTAG
380568 TTGATAAAAAATGAAAAAAAATGAA
1 TTGA-AAAAAATGAAAAAAAA-GAA
380593 -TGAAAAAAATGAAAAAAAA-AA
1 TTGAAAAAAATGAAAAAAAAGAA
** *
380614 TTGAAAATGATGAAAAAAGAGAA
1 TTGAAAAAAATGAAAAAAAAGAA
380637 ATAAATGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
21 2 0.05
22 16 0.41
23 18 0.46
24 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16
Consensus pattern (23 bp):
TTGAAAAAAATGAAAAAAAAGAA
Found at i:380902 original size:26 final size:27
Alignment explanation
Indices: 380866--380921 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
380856 AATAATTTTC
380866 AAATAAATTTCAATTCGATTAACGGTT
1 AAATAAATTTCAATTCGATTAACGGTT
** *
380893 AAAT-AATTTCTGTTCGATTAATGGTT
1 AAATAAATTTCAATTCGATTAACGGTT
380919 AAA
1 AAA
380922 GAAAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (27 bp):
AAATAAATTTCAATTCGATTAACGGTT
Found at i:380977 original size:69 final size:71
Alignment explanation
Indices: 380893--381060 Score: 207
Period size: 74 Copynumber: 2.4 Consensus size: 71
380883 ATTAACGGTT
* * *
380893 AAAT-AATTTCTGTTCGATTAATGGTTAAAGAAAAA-AAATCGGTTGATTTGG-TTCGGTTAATA
1 AAATAAATTTCTGTTCGATTAACGGTTAAAGAAAAATAAATCAGTTGATTCGGATTCGGTTAATA
380955 ATTTTC
66 ATTTTC
* * * *
380961 AAATAAATTTCTGTTCGATTAACGGTTAAAGAAAAATAATTTATTTTATTCGGTTAATTCGGTTA
1 AAATAAATTTCTGTTCGATTAACGGTTAAAGAAAAATAAATCAGTTGATTCGG---ATTCGGTTA
381026 ATAATTTTC
63 ATAATTTTC
**
381035 AAATAAATTTGGGTTCGATTAACGGT
1 AAATAAATTTCTGTTCGATTAACGGT
381061 CAAATAATTT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
68 4 0.05
69 30 0.35
70 10 0.12
74 41 0.48
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (71 bp):
AAATAAATTTCTGTTCGATTAACGGTTAAAGAAAAATAAATCAGTTGATTCGGATTCGGTTAATA
ATTTTC
Found at i:381063 original size:27 final size:27
Alignment explanation
Indices: 381033--381158 Score: 107
Period size: 26 Copynumber: 4.7 Consensus size: 27
381023 TTAATAATTT
*
381033 TCAAATAAATTTGGGTTCGATTAACGG
1 TCAAATAAATTTCGGTTCGATTAACGG
* *
381060 TCAAAT-AATTTTGGTTCGATTAATGG
1 TCAAATAAATTTCGGTTCGATTAACGG
* * ** * ***
381086 TTAAAGAAAAAAATCGGTT--AATAATTT
1 -TCAA-ATAAATTTCGGTTCGATTAACGG
381113 TCAAATAAATTTCGGTTCGATTAACGG
1 TCAAATAAATTTCGGTTCGATTAACGG
381140 TCAAAT-AATTTCGGTTCGA
1 TCAAATAAATTTCGGTTCGA
381159 CTAATGTTAA
Statistics
Matches: 76, Mismatches: 18, Indels: 11
0.72 0.17 0.10
Matches are distributed among these distances:
25 10 0.13
26 34 0.45
27 24 0.32
28 1 0.01
29 7 0.09
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (27 bp):
TCAAATAAATTTCGGTTCGATTAACGG
Found at i:381118 original size:80 final size:79
Alignment explanation
Indices: 381019--381269 Score: 342
Period size: 80 Copynumber: 3.1 Consensus size: 79
381009 TTCGGTTAAT
*
381019 TCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAAT
1 TCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAAT
381084 GGTTAAAGAAAAAAA
66 -GTTAAAGAAAAAAA
* *
381099 TCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGGTTCGACTAAT
1 TCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAAT
*
381164 GTTAAAGAAAAAAT
66 GTTAAAGAAAAAAA
* * ** * *
381178 TCGTTTAAT-TTGGTTTGGTTAATAAATTTTGGTTCGATTAACTGTCAAATAATTTTGGTTCGAT
1 TCGGTTAATAAT--TTT--CAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGAT
*
381242 TAATTTTAAAGAAAAAAA
62 TAATGTTAAAGAAAAAAA
381260 TTCGGTTAAT
1 -TCGGTTAAT
381270 TTGGTTCGAT
Statistics
Matches: 151, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 21 0.14
80 65 0.43
82 56 0.37
83 8 0.05
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (79 bp):
TCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAAT
GTTAAAGAAAAAAA
Found at i:381230 original size:82 final size:81
Alignment explanation
Indices: 381036--381289 Score: 327
Period size: 82 Copynumber: 3.1 Consensus size: 81
381026 ATAATTTTCA
* *
381036 AATAAATTTGGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAATC
1 AATAAATTTTGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAAT-GTTAAAGAAAAAATTC
* **
381101 GGTTAATAAT--TTT-CA
65 GGTTAAT-TTGGTTTGTT
* * *
381116 AATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGGTTCGACTAATGTTAAAGAAAAAATTCG
1 AATAAATTTTGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGTTAAAGAAAAAATTCG
*
381181 TTTAATTTGGTTTGGTT
66 GTTAATTTGGTTT-GTT
* *
381198 AATAAATTTTGGTTCGATTAACTGTCAAATAATTTTGGTTCGATTAATTTTAAAGAAAAAAATTC
1 AATAAATTTTGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGTTAAAG-AAAAAATTC
*
381263 GGTTAATTTGGTTCGATT
65 GGTTAATTTGGTTTG-TT
381281 AAT-AATTTT
1 AATAAATTTT
381290 CAAATAAATT
Statistics
Matches: 153, Mismatches: 15, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 21 0.14
80 48 0.31
82 57 0.37
83 26 0.17
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.40
Consensus pattern (81 bp):
AATAAATTTTGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGTTAAAGAAAAAATTCG
GTTAATTTGGTTTGTT
Found at i:383171 original size:137 final size:136
Alignment explanation
Indices: 382885--383200 Score: 379
Period size: 137 Copynumber: 2.3 Consensus size: 136
382875 GGTGCTCGCT
* ** * *
382885 TTTGCTCGAGGTTCTATTTTAATTATTCAATTCAAATAATTGGTTAAAATGAATTGAGCTAATGT
1 TTTGCTCGAGGTTCCATTTTAATTATTCAATTC-AATAATTAATTAAAATGAATAGAGCTAATAT
* *
382950 TTAGAGCCTCCATTTTAGGCTTAATTTCAAACTTAGTCCTTAAATTTAGGGGAATTTTTAATTTC
65 TTAGAGCCTCCACTTTAGGCTTAATTTC-AACTTAGTCCTTAAATTTAGGGGAATTCTTAATTTC
* *
383015 TTCATCGAT
129 TCCATC-AC
*
383024 TTTGCTCGAGGTTCCATTTTAATTATTCAATTCAATAATTAATTAAAATTGAATAG-GTTAATAT
1 TTTGCTCGAGGTTCCATTTTAATTATTCAATTCAATAATTAATTAAAA-TGAATAGAGCTAATAT
* * **
383088 TTAGAGCTTTCACTTTAGG-TCTAATTTC-ACTTTAGTCCTTTTATTTAGGGGAATTCTTAATTT
65 TTAGAGCCTCCACTTTAGGCT-TAATTTCAAC-TTAGTCCTTAAATTTAGGGGAATTCTTAATTT
*
383151 GGTCCAT-ACC
128 -CTCCATCA-C
* *
383161 TTTGCTCGAGGTTCCATATTAATTATTCAATCCAATAATT
1 TTTGCTCGAGGTTCCATTTTAATTATTCAATTCAATAATT
383201 GGTAAAACAA
Statistics
Matches: 155, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
136 3 0.02
137 68 0.44
138 46 0.30
139 38 0.25
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (136 bp):
TTTGCTCGAGGTTCCATTTTAATTATTCAATTCAATAATTAATTAAAATGAATAGAGCTAATATT
TAGAGCCTCCACTTTAGGCTTAATTTCAACTTAGTCCTTAAATTTAGGGGAATTCTTAATTTCTC
CATCAC
Found at i:392608 original size:2 final size:2
Alignment explanation
Indices: 392601--392625 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
392591 TGATGAATTC
392601 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
392626 ATTCAGTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:410959 original size:54 final size:54
Alignment explanation
Indices: 410862--411363 Score: 508
Period size: 54 Copynumber: 9.3 Consensus size: 54
410852 TTCATTACGA
* * * * * * **
410862 TGCACACGTAGTGCCTATACGATCATTCATAAAC-TCATTATGAATTCTGTGGGT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACAT-ATGATGAATTCTGTGCTT
* * * * * **
410916 TACACACATAGTGCTGAAACGATTATTCATCAACATACGATGAATTCCGTGAAT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTGCTT
* * *
410970 TGCAAATTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTATGTGCTT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTGCTT
* * * *
411024 TGCACACTTAGTTCCGAAACGGTTATTCATCAACATTATGATGAATTCCGTACTT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACA-TATGATGAATTCTGTGCTT
* * * * *
411079 TACACACTTAGTGCTGAAACGGTTATTCATCAACATATGATGAATTCTTTACTT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTGCTT
* * * * * *
411133 TGCACACATAGTGCCGAAGCGATTTTTCATCAACATATAACGAATT-TCGTACTT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCT-GTGCTT
* * * * *
411187 TGCACACTTAATGTCGAAAC-AGTTATTCATTAACTTATGATGAATT-TCGTACTT
1 TGCACACTTAGTGCCGAAACGA-TTATTCATCAACATATGATGAATTCT-GTGCTT
* ** * * *
411241 TGCACACTTAGTGCCAAAATAATTATTCATTAACATATGATGAATTCCGTACTT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTGCTT
* * *
411295 TGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTACTT
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTGCTT
411349 TGCACACTTAGTGCC
1 TGCACACTTAGTGCC
411364 TATTTGGTAA
Statistics
Matches: 379, Mismatches: 63, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.01
54 327 0.86
55 50 0.13
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (54 bp):
TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTGCTT
Found at i:411059 original size:108 final size:108
Alignment explanation
Indices: 410862--411363 Score: 571
Period size: 108 Copynumber: 4.6 Consensus size: 108
410852 TTCATTACGA
* * * * * * *** * *
410862 TGCACACGTAGTGCCTATACGATCATTCATAAAC-TCATTATGAATTCTGTGGGTTACACACATA
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACAT-ATGATGAATTCTGTACTTTGCACACTTA
* * *
410926 GTGCTGAAACGATTATTCATCAACATACGATGAATTCCGTGA-AT
65 GTGCCGAAACGATTATTCATCAACATATGATGAATTCCGT-ACTT
* * * *
410970 TGCAAATTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTATGTGCTTTGCACACTTAG
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTACTTTGCACACTTAG
* *
411035 TTCCGAAACGGTTATTCATCAACATTATGATGAATTCCGTACTT
66 TGCCGAAACGATTATTCATCAACA-TATGATGAATTCCGTACTT
* * * * *
411079 TACACACTTAGTGCTGAAACGGTTATTCATCAACATATGATGAATTCTTTACTTTGCACACATAG
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTACTTTGCACACTTAG
* * * * *
411144 TGCCGAAGCGATTTTTCATCAACATATAACGAATTTCGTACTT
66 TGCCGAAACGATTATTCATCAACATATGATGAATTCCGTACTT
* * * *
411187 TGCACACTTAATGTCGAAAC-AGTTATTCATTAACTTATGATGAATT-TCGTACTTTGCACACTT
1 TGCACACTTAGTGCCGAAACGA-TTATTCATCAACATATGATGAATTCT-GTACTTTGCACACTT
* ** *
411250 AGTGCCAAAATAATTATTCATTAACATATGATGAATTCCGTACTT
64 AGTGCCGAAACGATTATTCATCAACATATGATGAATTCCGTACTT
* *
411295 TGCACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTACTTTGCACACTTAG
1 TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTACTTTGCACACTTAG
411360 TGCC
66 TGCC
411364 TATTTGGTAA
Statistics
Matches: 329, Mismatches: 58, Indels: 14
0.82 0.14 0.03
Matches are distributed among these distances:
107 1 0.00
108 236 0.72
109 92 0.28
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (108 bp):
TGCACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCTGTACTTTGCACACTTAG
TGCCGAAACGATTATTCATCAACATATGATGAATTCCGTACTT
Found at i:411285 original size:162 final size:163
Alignment explanation
Indices: 410915--411358 Score: 563
Period size: 162 Copynumber: 2.7 Consensus size: 163
410905 ATTCTGTGGG
* ** * * * * **
410915 TTACACACATAGTGCTGAAACGATTATTCATCAACATACGATGAATTCCGTGA-ATTGCAAATTT
1 TTACACACTTAGTGCCAAAACAATTATTCATCAACATATGATGAATTCCGT-ACTTTGCACACAT
* *
410979 AGTGCCGAAACGATTATTCATCAACATATGATGAATTAT-GTGCTTTGCACACTTAGTTCCGAAA
65 AGTGCCGAAACGATTATTCATCAACATATGATGAATT-TCGTACTTTGCACACTTAATTCCGAAA
*
411043 CGGTTATTCATCAACATTATGATGAATTCCGTACT
129 CAGTTATTCATCAACATTATGATGAATTCCGTACT
** ** **
411078 TTACACACTTAGTGCTGAAACGGTTATTCATCAACATATGATGAATTCTTTACTTTGCACACATA
1 TTACACACTTAGTGCCAAAACAATTATTCATCAACATATGATGAATTCCGTACTTTGCACACATA
* * * *
411143 GTGCCGAAGCGATTTTTCATCAACATATAACGAATTTCGTACTTTGCACACTTAATGT-CGAAAC
66 GTGCCGAAACGATTATTCATCAACATATGATGAATTTCGTACTTTGCACACTTAAT-TCCGAAAC
* *
411207 AGTTATTCATTAAC-TTATGATGAATTTCGTACT
130 AGTTATTCATCAACATTATGATGAATTCCGTACT
* * * *
411240 TTGCACACTTAGTGCCAAAATAATTATTCATTAACATATGATGAATTCCGTACTTTGCACACTTA
1 TTACACACTTAGTGCCAAAACAATTATTCATCAACATATGATGAATTCCGTACTTTGCACACATA
* *
411305 GTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTACTTTGCACACTTA
66 GTGCCGAAACGATTATTCATCAACATATGATGAATTTCGTACTTTGCACACTTA
411359 GTGCCTATTT
Statistics
Matches: 244, Mismatches: 34, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
162 123 0.50
163 120 0.49
164 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (163 bp):
TTACACACTTAGTGCCAAAACAATTATTCATCAACATATGATGAATTCCGTACTTTGCACACATA
GTGCCGAAACGATTATTCATCAACATATGATGAATTTCGTACTTTGCACACTTAATTCCGAAACA
GTTATTCATCAACATTATGATGAATTCCGTACT
Found at i:411810 original size:20 final size:19
Alignment explanation
Indices: 411782--411836 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
411772 GTTATCAATG
*
411782 GTATTGATACCTTCTTCACA
1 GTATCGATACCTT-TTCACA
** *
411802 GTATCGATACCCTTTTTTCG
1 GTATCGATA-CCTTTTCACA
411822 GTATCGATACCTTTT
1 GTATCGATACCTTTT
411837 GAATCAGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 6 0.20
20 20 0.67
21 4 0.13
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.44
Consensus pattern (19 bp):
GTATCGATACCTTTTCACA
Found at i:416204 original size:48 final size:48
Alignment explanation
Indices: 416020--416187 Score: 264
Period size: 48 Copynumber: 3.5 Consensus size: 48
416010 CAGCTGCATT
* * *
416020 ATATTGAGCACAAGTTTGACATCTGTGTGACGGTGGTGCTATTATATG
1 ATATTGAGCACGAGTTTGACGTCTGTGTGACGATGGTGCTATTATATG
416068 ATATTGAGCACGAGTTTGACGTCTGTGTGACGATGGTGCTATTATATG
1 ATATTGAGCACGAGTTTGACGTCTGTGTGACGATGGTGCTATTATATG
* * * *
416116 ACATTGAGCATGACTTTGACGTATGTGTGACGATGGTGCTATTATATG
1 ATATTGAGCACGAGTTTGACGTCTGTGTGACGATGGTGCTATTATATG
*
416164 ATATAGAGCACGAGTTTGACGTCT
1 ATATTGAGCACGAGTTTGACGTCT
416188 ACATGACAGT
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 108 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (48 bp):
ATATTGAGCACGAGTTTGACGTCTGTGTGACGATGGTGCTATTATATG
Found at i:416628 original size:15 final size:16
Alignment explanation
Indices: 416593--416630 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
416583 ATGAGTATGC
*
416593 TTTATTATTGATTTTA
1 TTTAATATTGATTTTA
*
416609 TTTAATATTGTTTTTA
1 TTTAATATTGATTTTA
416625 -TTAATA
1 TTTAATA
416631 GTACTTAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTAATATTGATTTTA
Done.