Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000499.1 Hibiscus syriacus cultivar Beakdansim tig00000951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 585273
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
File 1 of 2
Found at i:1792 original size:814 final size:816
Alignment explanation
Indices: 1--5599 Score: 9317
Period size: 814 Copynumber: 6.9 Consensus size: 816
* *
1 TTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTG-ATTCACGGAAGCAAAATCACACA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
*
65 AGAC-TCATCTTCATATCTCCCCAA-TGAAAAGGGCGCATGTACTTGCTCTATGACTTCTAACTC
66 AGACTTCATCTTCATATCT-CCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTC
* *
128 ATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAG-AGTAGATAATTC-AAATCA
130 TTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCA
191 AAGAAAATGAAATAATAAA-TTCATGAATGAA-GAATTTGTCCGTTTAAGGTCCTCATTGGATAG
195 AAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAG
*
254 GTTCATTGAAACTTCCATTTCTTTAGATTGTTCGAACTTTGAATGT-GAATG-ATCGTACTTCGA
260 GTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAAT-GTACTTCGA
317 ATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATT
324 ATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATT
*
382 TGATTCATC-ATTTGCAATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAA
389 TGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAA
446 GAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTC
454 GAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTC
* * *
511 CCTTCTGAAA-TT-TCTTCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTG-TATTTTT-A
519 CCTTTTGAAATTTCTCTTCTTCATACTCTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGA
*
572 GTTCCACTATCACATTCATGGTTTTCTTCACACTCATTCTCTTC-ATATTCTCATTTTCAACTAC
584 GTTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTAC
636 TCCAAATGCCTTTG-TTTCTCTCAATGTTCATTTTGCATAGCATC-AAG-TTTTCTTAAGTTG-T
649 TCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTT
*
697 G-TGATCTTGAACTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATG
714 GTTGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATG
761 AATGAAT-ATGATTTAAAAAACCCATCATGCAATGCTCG
779 AATGAATAATGATTT-AAAAACCCATCATGCAATGCTCG
* *
799 TTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATAACACA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
* * *
864 AGAATTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACATGCTGTATGACTTCTAACTCT
66 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
*
929 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAGAGTTAGAAGTAGATAATTCAAAATCAA
131 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
994 AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
196 AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
1059 TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGAAT
261 TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGAAT
1124 GTCAAAGAGCACATGTTTTGGAATACCAAATG-TACAACATTTGGAACTTCAATGTAC-AATTTG
326 GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTG
* * *
1187 ATTCAACAATTTGCAATGGTATGGCCTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGA
391 ATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
1252 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
456 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
*
1317 TTTTGAAATTTCTCTTCTTCATACTCTTCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGT
521 TTTTGAAATTTCTCTTCTTCATACTCTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGT
*
1382 TCCACTTTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTC
586 TCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTC
*
1447 CAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGT
651 CAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGT
* *
1512 TGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAA
716 TGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAA
1577 TGAATAATGATTTAAAAACCCATCATGCAATGCTCG
781 TGAATAATGATTTAAAAACCCATCATGCAATGCTCG
* *
1613 TTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAAAATCACACA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
* * ** *
1678 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGAGCAGGTACTTGCTCTATGACTAATAACTCA
66 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
*
1743 TCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
131 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
*
1808 AGAAAATGAAATAATATATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
196 AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
*
1873 TTCATTGAAACTTCCATTTCTTTAGATTGTTCGAACTTTGAATGTAGAATG-ATCGTACTTCGAA
261 TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAAT-GTACTTCGAA
1937 TGTCAAAGAGCACATGTTTTGGAATACC-AATGTTACAACATTTGGAACTTCAATGTACAAATTT
325 TGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTT
* *
2001 GATTCATCAATTTGCAATGGTATGGCATTTGGAATAACCTGC-AATCAAACG-AATAATAGGAAG
390 GATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAG
2064 AAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCC
455 AAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCC
* * * * *
2129 CTTCTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTATTTTTTAG
520 CTTTTGAAATTTCTCTTCTTCATACTCTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAG
*
2194 TTCCACTTTCACATTCATGGTTTTC-TCACACTCATTCTCTTC-ATATTCTCATTTTCAACTACT
585 TTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACT
*
2257 CCAAATGCC-TTGTTTTCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTG
650 CCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTG
*
2321 TTGATCTTGAACTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCC-TCTCCCATGGATGA
715 TTGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGA
2385 ATGAATAATGATTTAAAAAACCCATCATGCAATGCTCG
780 ATGAATAATGATTT-AAAAACCCATCATGCAATGCTCG
* *
2423 TTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATAACACA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
* *
2488 AGA-TTC-TCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACATGCTGTATGACTTCTAACTCT
66 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
2551 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAG-AG-TAATTCAAAATCAA
131 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
*
2614 AG-AAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAAGTCCTCATTGGATAGG
196 AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
*
2678 TTCATTGAAACTTCCATTTCTTTAGA-TGTTTGAAC-TTG-ATGTAGAATGAACGTACTTCGAAT
261 TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGAAT
2740 GTCAAAGAGCACATG-TTTGGAATACCAAATGTTACAACATTTGGAACTTC-ATGTACAAA-TTG
326 GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTG
* * *
2802 ATTCAACAATTTGCAATGGTATGGCCTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGA
391 ATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
*
2867 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCGCATTA-TTTCTCTCATGCTCATGTCCC
456 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
*
2931 TTTTGAAATTTCTCTTCTTCATACTC-TCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGT
521 TTTTGAAATTTCTCTTCTTCATACTCTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGT
* *
2995 TCCACTTTCACATTCATGG--TT-TTCACACTCATTCTCTTCAATA-T-TCATTTTCAACAACTC
586 TCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTC
3055 CAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCAT---ATCAAAGTTTTTCTTAAGTTGTTGT
651 CAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGT
* *
3117 TGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAA
716 TGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAA
3182 TGAATAATGATTTAAAAACCCATCATGCAATGCTCG
781 TGAATAATGATTTAAAAACCCATCATGCAATGCTCG
* * * * *
3218 TTTATCACAGTGCTAAGGACGTCTGAGAAGTAGATGGCTTGAATTCATGGAAGCAACATCACATA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
** *
3283 AGACTTCATCTTCATATCGGCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCT
66 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
*
3348 TCATCTTCATAGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
131 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
** *
3413 AGAAAATGAAATAATAAATTTCATGAATGAATGCCTTTGTCCGTTTAAGGTCCTCGTTGGATAGG
196 AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
* *
3478 TTCATTGAAACTTCCATTTCCTTAGATTGTTTGAACTTTGAATGTAGAATGAATATACTTCGAAT
261 TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGAAT
* * * **
3543 GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAATTTG
326 GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTG
* *
3608 ATTCATTAATTTGCGAT-GTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
391 ATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
*
3672 AAAGATTGATTAGTAGAAAGC-AACTTCATTCTCCTTCCATTATTTTCTCTCATGCTCATGTCCC
456 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
* * *
3736 TTTTGAAATTTCTCTTCTTCATACTCCTT-TCGTATGCTCTCTTTACACTCTTCTTCTTTTTGAG
521 TTTTGAAATTTCTCTTCTTCATACT-CTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAG
* *
3800 TTTCCACTCTCACTTTCATGGTTTTCTTCACACTCATTCTCTTCAATATACTCA-TTTC-ACTAC
585 -TTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTAC
* *
3863 TCC-AATGCCTTTGTTTTCTATCAATGTTCATTTTACATAGCATCAAAGTTTTTCTTAAGTTGTT
649 TCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTT
*
3927 GTTGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAAATTGAATCTCCTTCTCCCATGGATG
714 GTTGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATG
*
3992 AATGAATAATGATTTAAAAACCCATCATGCAATGCTTG
779 AATGAATAATGATTTAAAAACCCATCATGCAATGCTCG
* *
4030 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGTAAAATCACACA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
* * *
4095 AGACTTCATCTTCATATCTCCCAATTG-AAAGGGCCCAGGTACTTGCTCTATGACTTCTAACTCA
66 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
*
4159 TCATCTTCATTGAATCATCATTCTAAAAAAATAAAGC-AAGTTAGAAGTAGATAATTCAAAATC-
131 TCATCTTCATTGAATCATCATTCT-GAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCA
* *
4222 -AGAAAATG-AATAATAAATTTCATGAATGTATGAATTTTGTCCATTTAAGGTCCTCATTGGATA
195 AAGAAAATGAAATAATAAATTTCATGAATGAATGAA-TTTGTCCGTTTAAGGTCCTCATTGGATA
* * * *
4285 GGTTCATTGAAACTTCCGTTTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGA
259 GGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGA
4350 ATGTCAAAGAGCACATGTTTTGGAATACCAAATG-TACAAC--TTGGAACTTCAATGTACAAATT
324 ATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATT
* * *
4412 TGATTCATCATTTTGCAATGGTATGACCTTTGGAATAACCTGCAAATCAAACG-AAGAATAGCAA
389 TGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAA
*
4476 GAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCT-CCATTATTTTCTCTCATTCTCATGTC
454 GAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTC
* * *
4540 CCTTTTGAAATTTCTCTTCTTCACAC-C-TCCCGTATACTATCTTTACACACTTGTTCTTTTTGA
519 CCTTTTGAAATTTCTCTTCTTCATACTCTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGA
4603 GTTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTAC
584 GTTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTAC
*
4668 TCCAAATGCCTTTGTTTTCTCTCAATGTTCTTTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTT
649 TCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTT
* * *
4733 GTTGATCTTGAAGTA-TTCGGTGTGGTGGCATTTGTACTAACGTGAATCTCCTTCTCCCATGGAT
714 GTTGATCTTGAAGTACTT-GGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGAT
4797 GAATGAATAATGATTTAAAAACCCATCATGCAATGCTCG
778 GAATGAATAATGATTTAAAAACCCATCATGCAATGCTCG
* ** * *
4836 TTTATCACATTGCCAAGGACGTTTGAGAAGTAAATGGCTTGAATTCATGGAAGCAACATCACACA
1 TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
* *
4901 AGACTTCATCTTCATATCGCCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCT
66 AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
*
4966 TCATCTTCATAGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
131 TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
* *
5031 AGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCGTTGGATAGG
196 AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
* * **
5096 TTCATTGAAACTTCCATTTCCTTAGATTTTTTGAACTTTGAATGTAGAATGAACATACTTCGAAT
261 TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGAAT
* * * **
5161 GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAATTTG
326 GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTG
* *
5226 ATTCATTAATTTGCGATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
391 ATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
5291 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
456 AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
* * * *
5356 TTTTGAAATTTCTCTTCTTCATACTCCTT-TCGTATGCTCTCTTTACTCTCTTCTTCTTTTTGAG
521 TTTTGAAATTTCTCTTCTTCATACT-CTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAG
5420 TTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACT
585 TTCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACT
*
5485 CCAAATGCCTTTGTTTTCTATCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTG
650 CCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTG
*
5550 TTAATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCC
715 TTGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCC
5600 CAATTGAAAA
Statistics
Matches: 4491, Mismatches: 231, Indels: 140
0.92 0.05 0.03
Matches are distributed among these distances:
795 155 0.03
796 31 0.01
797 121 0.03
798 89 0.02
799 48 0.01
800 269 0.06
801 96 0.02
802 140 0.03
803 117 0.03
804 322 0.07
805 265 0.06
806 471 0.10
807 155 0.03
808 169 0.04
809 354 0.08
810 277 0.06
811 119 0.03
812 316 0.07
813 215 0.05
814 507 0.11
815 51 0.01
816 201 0.04
817 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (816 bp):
TTTATCACAATGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCACACA
AGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCT
TCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAA
AGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGG
TTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAATGTACTTCGAAT
GTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTG
ATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGA
AAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCC
TTTTGAAATTTCTCTTCTTCATACTCTTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGT
TCCACTCTCACATTCATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTC
CAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGT
TGATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAA
TGAATAATGATTTAAAAACCCATCATGCAATGCTCG
Found at i:6217 original size:678 final size:678
Alignment explanation
Indices: 4920--6277 Score: 2403
Period size: 678 Copynumber: 2.0 Consensus size: 678
4910 CTTCATATCG
*
4920 CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATAGAATCATC
1 CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCATCATCTTCATAGAATCATC
* *
4985 ATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
66 ATTCTAAAAAATAAACCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
* *
5050 TTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCGTTGGATAGGTTCATTGAAACTTCCATTT
131 TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTT
*
5115 CCTTAGATTTTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
196 CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
* * ** *
5180 GGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAATTTGATTCATTAATTTGCGATGG
261 GGAATACCAAATGTTACAACATTTGCAACTTCAATAAACAAATTTGATTCAACAATTTGCAATGG
5245 TATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAA
326 TATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAA
5310 GCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
391 GCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
* * *
5375 CATACTCCTTTCGTATGCTCTCTTTACTCTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATGG
456 CATACTCCTATCGTATGCTATCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATGG
5440 TTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTA
521 TTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTA
*
5505 TCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAAGTACTTGGT
586 TCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAACTACTTGGT
5570 GTGGTGGCATTGGTACAAACTTGAATCT
651 GTGGTGGCATTGGTACAAACTTGAATCT
* * * *
5598 CCCAATTGAAAAGGGCGTAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATC
1 CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCATCATCTTCATAGAATCATC
5663 ATTCTAAAAAATAAACCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
66 ATTCTAAAAAATAAACCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
5728 TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTT
131 TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTT
* *
5793 CTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTT
196 CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
* **
5858 GGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCAATGG
261 GGAATACCAAATGTTACAACATTTGCAACTTCAATAAACAAATTTGATTCAACAATTTGCAATGG
* * *
5923 TATGGCTTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGAAAAGATTGATTAGTAGAAA
326 TATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAA
5988 GCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
391 GCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
* *
6053 CATACTCCTCAT-GTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTCATG
456 CATACTCCT-ATCGTATGCTATCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATG
6117 GTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCT
520 GTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCT
* * *
6182 CTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACTTGG
585 ATCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAACTACTTGG
*
6247 TGTGGTGGGATTGGTACAAACTTGAATCT
650 TGTGGTGGCATTGGTACAAACTTGAATCT
6276 CC
1 CC
6278 TTCTCCCATG
Statistics
Matches: 646, Mismatches: 33, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
678 645 1.00
679 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (678 bp):
CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCATCATCTTCATAGAATCATC
ATTCTAAAAAATAAACCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTT
CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
GGAATACCAAATGTTACAACATTTGCAACTTCAATAAACAAATTTGATTCAACAATTTGCAATGG
TATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAA
GCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
CATACTCCTATCGTATGCTATCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATGG
TTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTA
TCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAACTACTTGGT
GTGGTGGCATTGGTACAAACTTGAATCT
Found at i:7692 original size:816 final size:817
Alignment explanation
Indices: 5594--9055 Score: 6396
Period size: 816 Copynumber: 4.2 Consensus size: 817
5584 ACAAACTTGA
*
5594 ATCTCCCAATTGAAAAGGGCGTAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
5659 CATCATTCTAAAAAATAAACCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
5724 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
5789 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
5854 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCA
* * *
5919 ATGGTATGGCTTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
5984 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
** *
6049 TCTTCATACTCCTCATGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTGAGTTCCACTTTCACATTC
*
6114 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
6179 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
586 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
* *
6244 TGGTGTGGTGGGATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACAAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
6309 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
716 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
*
6374 TTCACGGAAGCAACATAACACAAGAATTCATCTTCAT
781 TTCACGGAAGCAAAATAACACAAGAATTCATCTTCAT
* * * *
6411 ATCTCCCAATTGAAAAGGGCGCAAGTACATGCTGTATGACTTCTAACTCTTCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
6476 CATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
6541 --ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
6604 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
*
6669 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTAAACAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCA
* * * *
6734 ATGGTATAGCCTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
6799 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
* *
6864 TCTTCATACTCCTCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTGAGTTCCACTTTCACATTC
6929 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
*
6994 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
*
7059 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTT-A
651 TGGTGTGGTGGCATTGGTACAAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
* *
7123 AAAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAA
716 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
* *
7188 TTCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
781 TTCACGGAAGCAAAATAACACAAGAATTCATCTTCAT
7225 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
7290 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
7355 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
* *
7420 ATTTCTTTAGATTGTTCGAACTTTGAATGTAGAATGATCGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
*
7485 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCA
7550 ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
7615 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
7680 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTT-AGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTGAGTTCCACTTTCACATTC
*
7744 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
*
7809 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
586 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
*
7874 TGGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACAAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
7939 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
716 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
*
8004 TTCACGGAAGCAACATAACACAAGAATTCATCTTCAT
781 TTCACGGAAGCAAAATAACACAAGAATTCATCTTCAT
* * * *
8041 ATCTCCCAATTGAAAAGGGCGCAAGTACATGCTGTATGACTTCTAACTCTTCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
8106 CATCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
8171 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
8236 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
*
8301 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCA
8366 ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
8431 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
*
8496 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTTAGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTGAGTTCCACTTTCACATTC
8561 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
*
8626 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
*
8691 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTT-A
651 TGGTGTGGTGGCATTGGTACAAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
* *
8755 AAAACCCATCATGCAATGGTCGTTTATCACAGTGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
716 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
* *
8820 TTCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
781 TTCACGGAAGCAAAATAACACAAGAATTCATCTTCAT
8857 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
8922 CATCATTCT-AAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
* *
8986 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCGTTGAATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
9051 ATTTC
196 ATTTC
9056 CTTACATTTG
Statistics
Matches: 2571, Mismatches: 70, Indels: 10
0.97 0.03 0.00
Matches are distributed among these distances:
814 223 0.09
815 901 0.35
816 1118 0.43
817 329 0.13
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (817 bp):
ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAACAATTTGCA
ATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTGAGTTCCACTTTCACATTC
ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACAACTCCAAATGCCTTTGTTT
TCTCTCAATGTTCATTTTGCATATCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
TGGTGTGGTGGCATTGGTACAAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
TTCACGGAAGCAAAATAACACAAGAATTCATCTTCAT
Found at i:15075 original size:814 final size:816
Alignment explanation
Indices: 9580--22418 Score: 22878
Period size: 816 Copynumber: 15.8 Consensus size: 816
9570 AGAATCATCT
*
9580 TCATTCATAAAAAAAAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATA
1 TCATTC-TAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATA
9645 AATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCG
65 AATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCG
9710 TTTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGT
130 TTTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGT
* *
9775 TTTGGAATACCAAATGTTCCAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTACAA
195 TTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAA
* * * * *
9840 TGGTATGGCCTTTGGAATAACCCGTAAATCAATCAAAAGAATAGGAAGAAAAGATTGATTAGTCG
260 TGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAG
* *
9905 AAAGCAAACTTCATTTTCCTCCCATTATTTTCTCTCTTGCTCATGTCCCTTTTGAAATTTCTCTT
325 AAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTT
* * *
9970 CTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCA
390 CTTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
**
10035 TGGTTTTCAACACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
10100 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
*
10165 GGTGTGGTGGCATTGGTACTAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
*
10230 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGATGTCCGAGAAGTAGATGGCTTGAATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
* *
10295 CACGGAAGCAAAATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCACAGGTACTT
715 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
*
10360 GCTCTATGACTTCTAACTCATCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
10397 TTATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
*
10462 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCAT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
* *
10527 TTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
10592 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
10657 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
10722 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCCCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * *
10787 TTCATACTCC-TCCTGTATGCTATATTTACACTCTTGTTCTTTTTGAGTTCAACTTTCACATTCA
391 TTCATACTCCTTCC-GTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
10851 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
*
10916 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGCTGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
* * * * *
10981 GGAGTGGTGGCATTGGTAATAACTTGAATCTCCATCTCCCATGGATGAATGAATAATGATTTTAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
11046 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
* * * *
11111 GATGGAAGCAAAATCA-ATGAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACT
715 CACGGAAGCAACATCACA-CAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACT
*
11175 TGCTCTATGACTTCTAACTCATCATCTTCATTGAATCA
779 TGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
11213 TTATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
* * *
11278 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAATGGATAGGTTCTTTGAAACTTCCAT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
* *
11343 TTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
11408 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
11473 GGTATGGCCTTTGGAATAACCTG-AAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
11537 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCCCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* *
11602 TTCATACTCC-TCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCAACTTTCACATTCA
391 TTCATACTCCTTCC-GTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
11666 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
11731 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
11796 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
* * *
11861 AACCCATCATGGAATGCTCATTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGTATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
11926 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
715 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
*
11991 GCTCTATGACTTCTAACTCATCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
12028 TTATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
* * *
12093 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAATGGATAGGTTCTTTGAAACTTCCAT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
* *
12158 TTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
12223 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
12288 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
12353 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* *
12418 TTCATACTCCTTCCGTTTGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
12483 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
12548 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
12613 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
* *
12678 ACCCATCATGCAATGCTCATTTATCACAGTGCCAAGGACGTTCGAGAAGTAGATGGCTTGAATTC
651 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
* *
12743 ACGGAAGCAACATAACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTG
716 ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTG
*
12808 CTCTAAGACTTCTAACTCTTCATCTTCATTGAATCA
781 CTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
12844 TCATTCTAAAAAAGAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
12909 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
12974 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
13039 TTGGAATACCAAATGTTACAAC-TTTGGAACTTCAATGTACAAATTTGATTCATCAATTTTGCAA
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAA-TTTGCAA
13103 TGGTATGGCCTTTGGAATAACCTTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
260 TGGTATGGCCTTTGGAATAACC-TGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
* *
13168 GAAAGCAAACTTCATTTTCCTCCCATTATTTTCTCTCTTGCTCATGTCCCTTTTGAAATTTCTCT
324 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
** * *
13233 TCTTCATACTCCTTTTGTATGCTCTCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTC
389 TCTTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTC
**
13298 ATGGTTTTCAACACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
454 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
13363 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
519 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
*
13428 TGGTGTGGTGGCATTGGTACTAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
584 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
*
13493 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGATGTCCGAGAAGTAGATGGCTTGAAT
649 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
* *
13558 TCACGGAAGCAAAATCACACAAGACTTCATCTTCATATCTCTCAATTGAAAAGGGCGCAGGTACT
714 TCACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACT
*
13623 TGCTC--TGACTTCTAACTCATCATCTTCATTGAATCA
779 TGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
13659 TTATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
13724 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
13789 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
*
13854 TTGGAATACCAAATGTTACAAC-TTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCACT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
* *
13918 GGTATGGCATTTGGAATAACCTGCAAATCAAATGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
13983 AAGCAAACTTCATT-TCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * *
14047 TTCATACTCCTTCCGTTTGCTATCTTTACACTCTTGTTCTTTTTGAATTCCACTTTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
14112 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
14177 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
14242 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
*
14307 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTTCGAGAAGTAGATGGCTTGAATTC
651 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
** *
14372 ACGGAAGCAACAGAACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTG
716 ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTG
*
14437 CTCTAAGACTTCTAACTCTTCATCTTCATTGAATCA
781 CTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
14473 TCATTCTAAAAAAGAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
14538 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
14603 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
* *
14668 TTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
14733 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
14798 AAGCAAACTTCATT-TCCTCCCATTATTTTCTCTCATTGCTCATGTCCCTTTTGAAATTTCTCTT
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCA-TGCTCATGTCCCTTTTGAAATTTCTCTT
** *
14862 CTTCATACTCCTTTTGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
390 CTTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
14927 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
14992 CTCTCAATGTTCATTTTGCATAGCATCAAAG-TTTTCTTAAGTTG-TGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
*
15055 GGTGTGGTGGCATTGGTACTAACATGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
15120 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
*
15185 CACGGAAGCAAAATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
715 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
*
15250 GCTCTATGACTTCTAACTCATCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
15287 TTATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
15352 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
15417 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
*
15482 TTGGAATACCAAATGTTAC-A-ATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTACAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
* * * * *
15545 GGTATGGCCTTTGGAATAACCCGTAAATCAATCAAAAGAATAGGAAGAAAAGATTGATTAGTCGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
* * *
15610 AAGCAAACTTCATTTTCCTCCCATTAATTTCTCTCATGCTCATGTCCATTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* *
15675 TTCATACTCC-TCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCAACTTTCACATTCA
391 TTCATACTCCTTCC-GTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
15739 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
15804 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
15869 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
* *
15934 AACCCATCATGGAATGCTCATTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
15999 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
715 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
*
16064 GCTCTAAGACTTCTAACTCTTCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
16101 TCATTTTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
16166 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
16231 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
*
16296 TTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATC-ATTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
*
16360 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
16425 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * *
16490 TTCATACTCCTCCCGTATACTATCTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
16555 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
16620 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
16685 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
* *
16750 ACCCATCATGGAATGCTCATTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
651 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
* *
16815 ACGGAAGCAAAATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTT
716 ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTG
*
16880 CTCTATGACTTCTAACTCATCATCTTCATTGAATCA
781 CTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
16916 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
16981 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
*
17046 TTCTTCAGATTGTTTGAACTTTGAATGTAGATTGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
*
17111 TTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
17176 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
* *
17241 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCCCATGTCCCTTAAT-AAATTTCTCTT
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTT-TTGAAATTTCTCTT
17305 CTTCATACTCC-TCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
390 CTTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
17369 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
17434 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
17499 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
* * *
17564 AACCCATCATGGAATGCTCATTTATCACATTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
* * *
17629 CAAGGAAGCAACATCACACAAGACTTCATCTTCATATCGCCCAATTGAAAAGGGTGCAGGTACTT
715 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
*
17694 GCTCTAAGACTTCTAACTCTTCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
17731 TCATTTTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
* * *
17796 ATTTCATGAATGTATGAATTTGTCGGTTTAAGGTCCTCGTTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
*
17861 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCGCATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
* *
17926 TTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
*
17991 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
18056 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * *
18121 TTCATACTCCTCCCGTATACTATCTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
18186 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
*
18251 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTATTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
18316 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
* *
18381 ACCCATCATGCAATGCTCGTTTATCACATTGCCAAGGACGTCTGAGAAGTAGATGGCTTGAATTC
651 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
* * ** * *
18446 ATGGAAGCAACATCACACAATACTTCATCTTCATATCGGCCAATTGAAAAGGGAGCAAGTACTTG
716 ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTG
* *
18511 CTCTATGACTTCTAACTCTTCATCTTCATAGAATAA
781 CTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
18547 TCATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
* * *
18612 ATTTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCGTTGGATAGGTTCATTGAAACTTCCAT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
** *
18677 TTCCTT-AGATTGTTTGAACTTTGAATGTAGAATGAATATACTTCGAATGTCAAAGAGCACATGT
131 TT-CTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGT
* * * ** * *
18741 TTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAATTTGATTCATTAATTTGCGA
195 TTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAA
18806 TGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAG
260 TGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAG
*
18871 AAAGCAAACTTCATTCTCCTCCCAATATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTT
325 AAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTT
* * *
18936 CTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCA
390 CTTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCA
19001 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
455 TGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTT
*
19066 CTATCAATGTTCATTTTGCATAGCATCAAAGTTTTT-TTAAGTTGTTGTTGATCTTGAAGTACTT
520 CTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT
* *
19130 GGTGTGGTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAATG---AAT-A---AAA
585 GGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAA
*
19188 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTTCGAGAAGTAGATGGCTTGAATT
650 AACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATT
* * * * * *
19253 CACGGAAGCAACATAACACAATAATTCATCTTCATATATCCCAATTGAAAAGGGCGCAAGTACAT
715 CACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTT
*
19318 GCTGTATGACTTCTAACTCTTCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
19355 TCATTCTGAAAAATAAAGCAAAGTTAGCAA-TAGATAATTCAAAATCAAAGAAAATGAAATAATA
1 TCATTCTAAAAAATAAAGCAAAGTTAG-AAGTAGATAATTCAAAATCAAAGAAAATGAAATAATA
* * *
19419 AATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATGGGTTCATTGAAGCTTCCC
65 AATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCG
* *
19484 TTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGT
130 TTTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGT
* * *
19549 TTTGGAATACCAAATGTTACAGCATTTGGAACTTCAATGTACAGATTTGATTCATCAATTTCCAA
195 TTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAA
*
19614 TGGTATGGCCTTTGGAATAA-CTCGTAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
260 TGGTATGGCCTTTGGAATAACCT-GCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
* *
19678 GAAAGCAAACTTCATTTTCCTCCCATTATTTTCTCTCTTGCTCATGTCCCTTTTGAAATTTCTCT
324 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
* * * *
19743 TCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTTGAGTTCCACTTTCACATTC
389 TCTTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTC
**
19808 ATGGTTTTCAACACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
454 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
19873 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
519 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
19938 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
584 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
* * * *
20003 AAACCCATCATGGAATGCTCATTTATCACAGTGGCAAGGACGTCCGAGAAGTAGATGACTTGAAT
649 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
*
20068 TCACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCCGGTACT
714 TCACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACT
*
20133 TGCTCTAAGACTTCTAACTCTTCATCTTCATTGAATCA
779 TGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
20171 TCATTCTAAAAAAGAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
20236 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
*
20301 TTCTTCCGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
* *
20366 TTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
*
20431 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
20496 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * *
20561 TTCATACTCCTCCCGTATACTATCTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
20626 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
* * *
20691 TCTCAATGTTCATTTTGAATAGTATCAAAGTTTTTCTTAAGTTGTTGTTTATCTTGAAGTACTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
20756 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
* *
20821 ACCCATCATACAATGCTCGTTTATCACAGTGCCAAGGACGTTCGAGAAGTAGATGGCTTGAATTC
651 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
* * * *
20886 ACGGAAGCAACATAACACAAGAATTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACATG
716 ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTG
*
20951 CTGTATGACTTCTAACTCTTCATCTTCATTGAATCA
781 CTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
* *
20987 TCATTCTGAAAAATAAAGCAAAGTTAGCAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
* * * *
21052 ATTTCATGAATGAATGAATTTGTCTGTTTAAGGTCCTCATTGGATGGGTTCATTGAAGCTTCCCT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
* *
21117 TTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
* *
21182 TTGGAATACCAAATGTTACAGCATTTGGAACTTCAATGTACAGATTTGATTCATCAATTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
* *
21247 GGTATGGCCTTTGGAATAACCCGTAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
21312 AAGCAAACTTCATTTTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * * * *
21377 TTCATAATCCTTTCGTATGCTCTCTTTACTCTCTTCTTCTTTTTGAGTTCCACTCTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
21442 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
21507 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
* * *
21572 GTGTGGTGGCATTGGTACTAACTTGAATGTCCTTCTCCCATGGATAAATGAATAATGATTTAAAA
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
* *
21637 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGAAGTCTGAGAAGTAGATGGCTTGAATTC
651 ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
* * * *
21702 ACGGAAGCAAAATCACACAGGACTTCATCTTCATATCTCCCAA-TGAAAAAGGGTGCA-CTACTT
716 ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTG-AAAAGGGCGCAGGTACTT
*
21765 GCTCTATGACTTCTAACTCATCATCTTCATTGAATCA
780 GCTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
*
21802 TCATTCTAAAAAAGAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
1 TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
21867 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
66 ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
*
21932 TTCTTCCGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
131 TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
* *
21997 TTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCAAT
196 TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
*
22062 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGA
261 GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
*
22127 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCATGTCCCTTTTGAAATTTCTCTTC
326 AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
* * *
22192 TTCATACTCCTCCCGTATACTATCTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
391 TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
*
22257 GGATTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
456 GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
*
22322 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAAGTACTTG
521 TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
* *
22387 GTGTGGTGGCATTGGTACAAACTTGAATCTCC
586 GTGTGGTGGCATTGGTACTAACGTGAATCTCC
22419 CAATTGAAAA
Statistics
Matches: 11559, Mismatches: 426, Indels: 76
0.96 0.04 0.01
Matches are distributed among these distances:
807 5 0.00
808 676 0.06
809 79 0.01
811 2 0.00
812 726 0.06
813 92 0.01
814 1184 0.10
815 3552 0.31
816 4745 0.41
817 498 0.04
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (816 bp):
TCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAA
ATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGT
TTCTTCAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTT
TTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAAT
GGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGA
AAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTC
TTCATACTCCTTCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCAT
GGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTC
TCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTG
GTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAA
ACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTC
ACGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTG
CTCTATGACTTCTAACTCTTCATCTTCATTGAATCA
Found at i:23057 original size:678 final size:678
Alignment explanation
Indices: 21760--23096 Score: 2458
Period size: 678 Copynumber: 2.0 Consensus size: 678
21750 AAGGGTGCAC
21760 TACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATCATTCTAAAAAAGAAAGCAAAG
1 TACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATCATTCTAAAAAAGAAAGCAAAG
21825 TTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGT
66 TTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGT
* * *
21890 CCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGTTTCTTCCGATTGTTTGAACTTTG
131 CCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTTCTTCAGATTGTTTGAACTTTG
* *
21955 AATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACT
196 AATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACA
* *
22020 TTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCAATGGTATGGCCTTTGGAATAACCTG
261 TTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCCG
22085 CAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCA
326 CAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCA
*
22150 TTATTTTCTCTCATTCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTAT
391 TTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTAT
22215 CTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCATGGATTTCTTCACACTCATTCTCT
456 CTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCATGGATTTCTTCACACTCATTCTCT
22280 TCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGC
521 TCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGC
* *
22345 ATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACT
586 ATCAAAGTTTTTCTTAAGATGTTGTTAATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACG
22410 TGAATCTCCCAATTGAAAAGGGCGTAGG
651 TGAATCTCCCAATTGAAAAGGGCGTAGG
22438 TACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATCATTCTAAAAAAGAAAGCAAAG
1 TACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATCATTCTAAAAAAGAAAGCAAAG
22503 TTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGT
66 TTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGT
*
22568 CCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTTCTTTAGATTGTTTGAACTTTG
131 CCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTTCTTCAGATTGTTTGAACTTTG
*
22633 AATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAGCA
196 AATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACA
*
22698 TTTGGAACTTCAATGTACAGATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCCG
261 TTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCCG
* * *
22763 TAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTTTCCTCCCA
326 CAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCA
* *
22828 TTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCTGTATGCTAT
391 TTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTAT
* * *
22893 CTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTCATGGTTTTCTTCACACTCATTCTCT
456 CTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCATGGATTTCTTCACACTCATTCTCT
22958 TCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGC
521 TCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGC
* * *
23023 ATCAAAGTTTTTCTTAAGATGTTGTTGATCTTGAAGTACTTGGTGTGTTGGCATTGGTACTAACG
586 ATCAAAGTTTTTCTTAAGATGTTGTTAATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACG
23088 TGAATCTCC
651 TGAATCTCC
23097 TTCTCCCATG
Statistics
Matches: 635, Mismatches: 24, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
678 635 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (678 bp):
TACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATCATTCTAAAAAAGAAAGCAAAG
TTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGT
CCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTTCTTCAGATTGTTTGAACTTTG
AATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACA
TTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCCG
CAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCA
TTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTAT
CTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTCATGGATTTCTTCACACTCATTCTCT
TCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCATAGC
ATCAAAGTTTTTCTTAAGATGTTGTTAATCTTGAAGTACTTGGTGTGGTGGCATTGGTACAAACG
TGAATCTCCCAATTGAAAAGGGCGTAGG
Found at i:24541 original size:678 final size:677
Alignment explanation
Indices: 23233--24589 Score: 2374
Period size: 678 Copynumber: 2.0 Consensus size: 677
23223 CTTCATATCG
*
23233 CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATAGAATCATC
1 CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCATCATCTTCATAGAATCATC
*
23298 ATTCTAAAAAATAAAGCAAAGTTAGAAGTATATAATTCAAAATCAAAGAAAATGAAATAATAAAT
66 ATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
* * *
23363 TTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCGTTGGATAGGTTCATTGAAACTTCCATTT
131 TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTT
23428 CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
196 CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
* * * ** *
23493 GGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACCAATTTGATTCATTAATTTGCGATGT
261 GGAATACCAAATGTTACAACATTTGCAACTTCAATAAACAAATTTGATTCAACAATTTGCAATGT
23558 ATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAG
326 ATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAG
*
23623 CAAAGTTCATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTC
391 CAAACTTCATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTC
* *
23688 ATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATGGT
456 ATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATGGT
23753 TTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTAT
521 TTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTAT
*
23818 CAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTAATCTTGAAGTACTTGGTG
586 CAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGATGTTGTTAATCTTGAAGTACTTGGTG
*
23883 TGGTGGCATTGGTACAAACTTGAATCT
651 TGGTGGCATTGGTACAAACGTGAATCT
* * * *
23910 CCCAATTGAAAAGGGCGTAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAATCATC
1 CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCATCATCTTCATAGAATCATC
*
23975 ATTCTTAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
66 ATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
24040 TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTT
131 TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTT
* *
24105 CTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTT
196 CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
* *
24170 GGAATACCAAATGTTACAACATTTGGAACTTCAATATACAAATTTGATTCAACAATTTGCAATGG
261 GGAATACCAAATGTTACAACATTTGCAACTTCAATAAACAAATTTGATTCAACAATTTGCAAT-G
* *
24235 TATGGCCTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGAAAAGATTGATTAGTAGAAA
325 TATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAA
*
24300 GCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
390 GCAAACTTCATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTT
* *
24365 CATACTCCTC-CTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTCATG
455 CATACTCCTCTC-GTATGCTATCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATG
*
24429 GTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCTAAATGCCTTTGTTTTCT
519 GTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCT
* *
24494 CTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGATGTTGTTGATCTTGAAGTACTTGG
584 ATCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGATGTTGTTAATCTTGAAGTACTTGG
* *
24559 TGTGTTGGCATTGGTACTAACGTGAATCT
649 TGTGGTGGCATTGGTACAAACGTGAATCT
24588 CC
1 CC
24590 TTCTCCCATG
Statistics
Matches: 643, Mismatches: 35, Indels: 3
0.94 0.05 0.00
Matches are distributed among these distances:
677 304 0.47
678 339 0.53
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (677 bp):
CCCAATTGAAAAGGGAGCAAGTACTTGCTCTATGACTTCTAACTCATCATCTTCATAGAATCATC
ATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAAT
TTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACCATTT
CCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACATGTTTT
GGAATACCAAATGTTACAACATTTGCAACTTCAATAAACAAATTTGATTCAACAATTTGCAATGT
ATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAG
CAAACTTCATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTC
ATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTCATGGT
TTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTAT
CAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGATGTTGTTAATCTTGAAGTACTTGGTG
TGGTGGCATTGGTACAAACGTGAATCT
Found at i:27473 original size:817 final size:816
Alignment explanation
Indices: 23906--30140 Score: 11106
Period size: 816 Copynumber: 7.7 Consensus size: 816
23896 ACAAACTTGA
*
23906 ATCTCCCAATTGAAAAGGGCGTAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
23971 CATCATTCTTAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
*
24036 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTACC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
24101 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
* *
24166 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATATACAAATTTGATTCAACAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
* *
24231 ATGGTATGGCCTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
24296 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
*
24361 TCTTCATACTCCTCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
*
24426 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCTAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
*
24491 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGATGTTGTTGATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
*
24556 TGGTGTGTTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
*
24621 AAACCCATCATGCAATGCTCATTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
716 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
*
24686 TCATGGAAGCAAAATCACACAAGACTTCATCTTCAT
781 TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
* *
24722 ATCTCCCAATTGAAAAGGGCACATGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
24787 CATCATTCTAAAAAAGAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
24852 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
* ** *
24917 GTTTCTTCCGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
* *
24982 TTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
*
25047 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
25112 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCATGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
* * *
25177 TCTTCATACTCCTCCCGTATACTATCTTTACACACTTGTTCTTTTTGAGTTCCACTCTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
*
25242 ATGGATTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
25307 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
*
25372 TGGTGTGGTGGCATTGGTACTAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
*
25437 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGATGTCCGAGAAGTAGATGGCTTGAAT
716 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
25502 TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
781 TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
*
25538 ATCTCCCAATTGAAAAGGGCACAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
25603 CATTATTCT--AAAAT-AAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAA-GAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
25664 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
*
25729 ATTTCTTTAGATTGTTTGAACTTTTAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
* *
25794 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATATACAAATTTGATTCAACAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
* *
25859 ATGGTATGGCCTTTGGAATAACTTGCAAATCAAACGAAAGGATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
25924 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
*
25989 TCTTCATACTCCTCCTGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
*
26054 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCTAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
*
26119 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGATGTTGTTGATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
*
26184 TGGTGTGTTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
*
26249 AAACCCATCATGCAATGCTCATTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
716 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
*
26314 TCATGGAAGCAAAATCACACAAGACTTCATCTTCAT
781 TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
26350 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
*
26415 CATCAATCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
* *
26480 AAATTTCATGAATGAATGAATTTGTCCATTTAAAGTCCTCATTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
*
26545 ATTTCTTTAGATTGTTTGAACTTTTAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
* *
26610 TTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATTCATCATTTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
26675 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
26740 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTCTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
* *
26805 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTATTTTTTAGTTCCACTTTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
*
26870 ATGGATTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
*
26935 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAACTACT
586 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
* * *
27000 TGGTGTGCTGGCATTGGTACAAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTT-A
* *
27065 AAAACCCATCATGCAATGCTCGTTTATCACAATGCCAAGGATGTCCGAGAAGTAGATGGCTTGAA
715 AAAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAA
27130 TTCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
780 TTCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
27167 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
27232 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
*
27297 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTTGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
* *
27362 ATTTCTTTAGATTGTTCGAACTTTGAATGTAGAATGACCGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
27427 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
27492 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
27557 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCTTGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
* *
27622 TCTTCATACTCCTCCCGTATGCTATCTTTACAGTCTTGTTCTTTTTGAGTTCCACTTTCACATTT
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
*
27687 ATGGTTTTCTTCACACTCATTCTATTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
* * *
27752 TCTCTCAATGTTCATTTTGAATAGTATCAAAGTTTTTCTTAAGTTGTTGTTTATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
27817 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
* *
27882 AAACCCATCATACAATGCTCGTTTATCACAGTGCCAAGGACGTTCGAGAAGTAGATGGCTTGAAT
716 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
* * *
27947 TCACGGAAGCAACATAACACAAGAATTCATCTTCAT
781 TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
* * *
27983 ATCTCCCAATTGAAAAGGGCGCAAGTACATGCTGTATGACTTCTAACTC-TCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
* *
28047 CATCATTCTGAAAAATAAAGCAAAGTTAGCAGTAGATAATTC-AAATCAAAGAAAATG-AATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
* * *
28110 AAATTTCATGAATGAATGAA-TTGTCTGTTTAAGGTCCTCATTGGATGGGTTCATTGAAGCTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
*
28174 CTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
* *
28239 TTTTGGAATACCAAATGTTACAGCATTTGGAACTTCAATGTACAGATTTGATTCATCAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
* *
28304 ATGGTATGGCCTTTGGAATAACCCGTAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
28369 GAAAGCAAACTTCATTTTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTT-TCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
* ** * * *
28433 TCTTCATAATCCTTTCGTATGCTCTCTTTACTCTC-T-CTCTTTTTGAGTTCCAC--TCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
28494 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCC-AATGCCTTTG-TT
521 ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
28557 TCTCTCAATGTTC-TTTTGCATAGCATCAAAG-TTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
586 TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
* * *
28620 TGGTGTGGTGGCATTGGTACTAACTTGAATGTCCTTCTCCCATGGATAAATGAATAATGATTTAA
651 TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
* *
28685 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGAAGTCTGAGAAGTAGATGGCTTGAAT
716 AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
*
28750 TCACGGAAGCAAAATCACACAGGACTTCATCTTCAT
781 TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
* *
28786 ATCTCCCAA-TGAAAAAGGGTGCA-CTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAA
1 ATCTCCCAATTG-AAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAA
*
28849 TCATCATTCTAAAAAAGAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAA
65 TCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAA
28914 TAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTC
130 TAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTC
* *
28979 CATTTCTTTAGATTGTTTGCACTTTGAATGTAGAATGAACATACTTCGAATGTCAAAGAGCACAT
195 CATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACAT
* **
29044 GTTTTGGAATA-AAAATGTTTTAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGC
260 GTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGC
*
29108 AATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGT
325 AATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGT
29173 AGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTC
390 AGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTC
* * * *
29238 TTCTTCATACTCCTTCCGTTTGCTATCTTTACACTCTTGTTCTTTTTGAATTCCACTTTCCCATT
455 TTCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATT
29303 CATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTT
520 CATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTT
*
29368 TTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTTTTGTTGATCTTGAAGTAC
585 TTCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTAC
29433 TTGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTA
650 TTGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTA
* * *
29498 AAAACCCATCATGCAATGCTCGTTTATCACATTGCCAAGGATGTCCGAGAAGTTGATGGCTTGAA
715 AAAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAA
* *
29563 TTCATGGAAGCAACATCACACAAGACTTCATCTTCAT
780 TTCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
* * *
29600 ATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAAT
1 ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
* *
29665 CATCATTCTGAAAAATAAAGCAAACTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
66 CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
*
29730 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCGTTGGATAGGTTCATTGAAACTTCC
131 AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
*
29795 ATTTCTTTAGATTGTTCGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
196 ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
29860 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
261 TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
* *
29925 ATGGTATGGCCTTTGGAATAACCCGTAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
326 ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
*
29990 GAAAGCAAACTTCATTTTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
391 GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
** * * *
30055 TCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTTGAGTTCCACTCTCACATTC
456 TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
30120 ATGGTTTTCTTCACACTCATT
521 ATGGTTTTCTTCACACTCATT
30141 GACGTAAGGC
Statistics
Matches: 5175, Mismatches: 222, Indels: 44
0.95 0.04 0.01
Matches are distributed among these distances:
802 24 0.00
803 259 0.05
804 31 0.01
805 212 0.04
806 156 0.03
807 58 0.01
808 15 0.00
809 16 0.00
810 59 0.01
811 42 0.01
812 1042 0.20
813 83 0.02
814 229 0.04
815 333 0.06
816 1828 0.35
817 788 0.15
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (816 bp):
ATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAACTCATCATCTTCATTGAAT
CATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAAT
AAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCC
ATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATG
TTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCA
ATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTA
GAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCT
TCTTCATACTCCTCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTC
ATGGTTTTCTTCACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTT
TCTCTCAATGTTCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACT
TGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAA
AAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAAT
TCACGGAAGCAAAATCACACAAGACTTCATCTTCAT
Found at i:35495 original size:815 final size:816
Alignment explanation
Indices: 33379--36648 Score: 5691
Period size: 816 Copynumber: 4.0 Consensus size: 816
33369 GTGATCACAT
33379 CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
1 CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
33444 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCA
66 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCA
* *
33509 TTGGTACTAACTTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCCTCATGC
131 TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
*
33574 AATGCTCGTTTATTACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAAA
196 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAAA
* *
33639 ATCACACAATACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTT
261 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTT
33704 CTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTC
326 CTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTC
33769 AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAT
391 AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAT
* *
33834 TGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAAAGAACATA
456 TGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTA
33899 CTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTA
521 CTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTA
*
33964 CAAATTTGATTTATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
586 CAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
* *
34029 TAGGAAGAAATGATTGATTAGTAGAAAGCAAACTTCATTATCCTCCCATTATTTTCTCTCATGCT
651 TAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCT
34094 CATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTCT
716 CATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTCT
* *
34159 TTTTAAATTCCACTTTCACATTCATGGTTTTCTTCA
781 TTTTGAATTCCACTCTCACATTCATGGTTTTCTTCA
*
34195 CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAGATGCCTTTGTTTTCTCTCAATGTTC
1 CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
* * *
34260 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGCTCTTAAAGTACTTGTTGTGGTGGCA
66 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCA
* * *
34325 TTGGTACGAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATTATGG
131 TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
* *
34390 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGTAAC
196 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAAA
*
34455 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTGTAAGACTT
261 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTT
* * *
34520 CTAACTCTTCAACTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTCAGAAGTAGATAATTC
326 CTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTC
*
34585 AAAATCAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAT
391 AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAT
*
34650 TGGATAGGTTCATTGAAACTTCCGTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTA
456 TGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTA
* * *
34715 CTTTGAATGTCAAAGAGCAAATGTTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTA
521 CTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTA
* *
34780 CAAATTTGATTCATCATTTTGTAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
586 CAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
* * * *
34845 TAGCAAGAAAAGATTGGTTTGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCT
651 TAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCT
* * *
34910 CATGTCCCTTTTGAAATGTCTCTTCTTCATACTCCTCCCGTATACTATCTTTACACTCTTGTTCT
716 CATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTCT
* *
34975 TTTTGAGTTCCACTCTCACATTCATGGTTTTCTTCG
781 TTTTGAATTCCACTCTCACATTCATGGTTTTCTTCA
* * * * * *
35011 CACTCAATCTCTTCAATATTATCATTTTCAACTACACCAAATACCTTTGTTTTCTCTTAATATTC
1 CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
* * * *
35076 ATTTTGCACAGCATCAAAG-TTTTCTTAAGTTGTTGTTGATCTTGAACTACTTCGG-GTGATGGA
66 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTT-GGTGTGGTGGC
*
35139 ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTAAAAAACCCATCATG
130 ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATG
* * **
35204 GAATGCTCGTTTATCACAGTGCCTAGGACGTCCGAGAAGTAGATGGCTTGAATTCATTGAAGCAA
195 CAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAA
* * * * *
35269 GATCACACAAGACTTTATCTTCATATCTCCCAATTGAAAGGGGCGCAAGTACTTGCTCCAAGACT
260 AATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACT
* *
35334 TCTAACTCTTCATCTTCATTGAATCATCTTTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATT
325 TCTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATT
* *
35399 CAAAATCAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCTTCA
390 CAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCA
*
35464 TTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGT
455 TTGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGT
*
35529 ACTT-GAATGTCAAAGAGCACATGTTTTAGAATACCAAATGTTACAACATTTGGAACTTCAATGT
520 ACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGT
* *
35593 ACAAACTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGA
585 ACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGA
35658 ATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGC
650 ATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGC
** * * *
35723 TCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTC
715 TCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTC
* *
35788 TTTTTGAGTTCCACTCTCACATTTATGGTTTTCTTCA
780 TTTTTGAATTCCACTCTCACATTCATGGTTTTCTTCA
* *
35825 CACTCATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
1 CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
35890 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCA
66 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCA
35955 TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
131 TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
* *
36020 AATGCTCGTTTATCACAGTGCCATGGACGTCCGAGAAGTAGATTGCTTGAATTCACGGAAGCAAA
196 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAAA
* *
36085 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCATGTACTTGCTCTATGACTT
261 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTT
*
36150 CTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAACAAAGTTAGAAGTAGATAATTC
326 CTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTC
* *
36215 AAAATCAAAGAAAATGAAATAATAAATTTAATGAATGAATGAATTTGTCCGTTTGAGGTCCTCAT
391 AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAT
*
36280 TGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTGGAATGAACGTA
456 TGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTA
*
36345 CTTCGAATGTCAAAGAGCACATGTTTTGGAATACAAAATGTTACAACATTTGGAACTTCAATGTA
521 CTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTA
* *
36410 CAAATTTGATTCATCAATTTGTAATGGTATTGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
586 CAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
36475 TAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCT
651 TAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCT
*
36540 CATGTCCGTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTCT
716 CATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTCT
*
36605 TTTTGAATTCCACTTTCACATTCATGGTTTTCTTCA
781 TTTTGAATTCCACTCTCACATTCATGGTTTTCTTCA
36641 CACTCATT
1 CACTCATT
36649 GATGTAAGGT
Statistics
Matches: 2309, Mismatches: 141, Indels: 8
0.94 0.06 0.00
Matches are distributed among these distances:
814 350 0.15
815 822 0.36
816 1137 0.49
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (816 bp):
CACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCA
TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAAA
ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTT
CTAACTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTC
AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCAT
TGGATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTA
CTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACATTTGGAACTTCAATGTA
CAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAA
TAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCT
CATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTATCATTACACTCTTGTTCT
TTTTGAATTCCACTCTCACATTCATGGTTTTCTTCA
Found at i:49938 original size:815 final size:816
Alignment explanation
Indices: 38529--50000 Score: 19642
Period size: 816 Copynumber: 14.1 Consensus size: 816
38519 TCGTATCATC
*
38529 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAGATGCCTTTGTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
38594 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
* *
38659 TACGAACGTGAATCTCCTTCTCCCACGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* *
38724 CTCGTTTATCACAGTGCCAACGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGTAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* *
38789 CACAAGACTTCATCTTCATATCTCCCAATTGTAAAGGGCGCAGGTACTTGCTCTAAGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
*
38854 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGAAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* *
38919 TCAAAGAAAATGAAATTATAAATTTTATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
38984 TAGGTTCATTGAAACTTCCGTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTT
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* **
39049 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAA-CTTTGGGAACTTCAATGTACAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTT-GCAACTTCAATAAACAA
* * * *
39113 ATTTGATTCATCATTTTGTAATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAG
585 ATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAG
* * * *
39178 CAAGAAAAGATTGGTTTGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCAT
650 GAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCAT
* * * * *
39243 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTATATTTACACTATTGTTCTTTT
715 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTT
39308 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
780 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
39345 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATCTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
*
39410 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTTGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
*
39475 TACTAACGTGAATCTCCTTCTCCCACGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
*
39540 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGTAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* *
39605 CACAAGACATCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
39670 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* *
39735 TGAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
39800 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
*
39865 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* *
39930 TTTGATTCATTAATTTGCGATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
39995 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
40060 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
*
40125 GAGTTCCACTCTCACATTTATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
40161 CATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
40226 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
*
40291 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATTATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
40356 CTCGTTTATCACAGTGCCATGGACGTCTGAGAAGTAGATGGCTTGAATTCATGGAAGCAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* *
40421 CACAAGACTTCATCTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
* * * *
40486 CTCTTCATCTTCATTGAATCATCATTCTGAAAAATGAAGCAAACTTAGAAGTAGATATTTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
*
40551 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
40616 TAGGTTCATTGAAACTTCCATTTCCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTC
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* *
40681 GAATGTCAAAGAGCACATGTTTTGGAATAGCAAATGTTACAACCTTTGCAATTTCAATAAACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* * *
40746 TTTGATTCATTAATTTGCGATGGTATGGTCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
*
40811 AAGAAAAGATTGATTAGTGGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
40876 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
*
40941 GAGTTCCACTCTCACATTTATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
40977 CATTCTAC-TCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATT
1 CATTCT-CTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATT
*
41041 TTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCGTTG
65 TTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTG
41106 GTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAAT
130 GTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAAT
*
41171 GCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGTAACATC
195 GCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATC
* * *
41236 ACACAAGACATCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTGGCTCTAAGACTTCTA
260 ACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTA
*
41301 AATCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAA
325 ACTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAA
* * *
41366 ATGAAAGAAAATGAAATTATAAATTTCATTAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGG
390 ATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGG
41431 ATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTT
455 ATAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTT
* *
41496 CGAATGTCAAAGAACACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAA
520 CGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAA
* *
41561 ATTTGATTCATTAATTTGCGATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAG
585 ATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAG
* *
41626 GAATAAAAGATTGATTAGTAGAAAGAAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCAT
650 GAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCAT
* **
41691 GTCCCTTTTGAAATTTCTCTTC-T--T-C-CCTTTCGTATGCCCTCTTTACACTCTTCTTCTTTT
715 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTT
*
41751 TGAGTTCCACTCTCACATTTATGGTTTTCTTCACACT
780 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
41788 CATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
41853 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
*
41918 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATTATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
41983 CTCGTTTATCACAGTGCCATGGACGTCTGAGAAGTAGATGGCTTGAATTCATGGAAGCAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* * *
42048 CACAAGACTTCATCTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTATATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
* * *
42113 CTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAACTTAGAAGTATATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
*
42178 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
42243 TAGGTTCATTGAAACTTCCATTTCCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTC
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
*
42308 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* *
42373 TTTGATTCATTAATTTGCGATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
* *
42438 AAGAAAAGATTGATTAGTGGAAAGCAAACTTCATTCTCCTACCATTATTTTCTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
42503 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
* *
42568 GAGTTGCACTCTCACATTTATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
42604 CATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
42669 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
42734 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
42799 CTCGTTTATCACAGTGCCATGGACGTCCGAGAAGTAGATTGCTTGAATTCACGGAAGCAAAATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
42864 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
* *
42929 CTCATCATCTTCATTGAATCATCATTCTAAAAAATAAAACAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* * *
42994 TCAAAGAAAATGAAATAATAAATTTAATGAATGAATGAATTTGTCCGTTTGAGGGCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
*
43059 TAGGTTCATTAAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* ** * **
43124 GAATGTCAAAGAGCACATGTTTTGGAATACAAAATGTTACAAAATTTGGAACTTCAATGTACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* * *
43189 TTTGATTCATCAATTTGTAATGGTATTGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
*
43254 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTTTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
43319 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTAT-TATTACACTCTTGTTCTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCT-TTACACTCTTCTTCTTTT
* *
43383 TGAATTCCACTTTCACATTCATGGTTTTCTTCACACT
780 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
43420 CATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
43485 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
43550 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
43615 CTCGTTTATCACAGTGCCATGGACGTCCGAGAAGTAGATTGCTTGAATTCACGGAAGCAAAATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
43680 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
43745 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* *
43810 TCAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCTGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* * *
43875 TAGGTTCATTGAAACTTCCGTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTT
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* * **
43940 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* ** * * *
44005 TTTGATTCATCATTTTTTAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACAAAAGAATAGC
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
* * * *
44070 AAGAAAAGATTGGTTTGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTTATTCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* * *
44135 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTATCTTTACACTCTTGTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
* *
44200 GAGTTCCACTCTTACATTCATGGTTTTATTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
44236 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATCTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
* * *
44301 TGCATAGCATCAAAGTTTTTCCTAAGTTGTTGATGATCTTGAAGTACTTGGTGTGGTTGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
*
44366 TACTAACGTGAATCTCCTTCTCCCACGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * * *
44431 CTCGTTTATCACATTGCCAATGACGTCTGAGAAGTAGATGGCTTGAATTCATGGAAGCAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* *
44496 CACAAGACTTCATCTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
** *
44561 CTCTTCATCTTCATTGAATCATCATTCTGTAAAATAAAGCAAACTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
*
44626 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
44691 TAGGTTCATTGAAACTTCCATTTCCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTC
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
*
44756 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* *
44821 TTTGATTCATTAATTTGCGATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
*
44886 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCATCCCATTATTTTCTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
44951 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
*
45016 GAGTTCCACTCTCACATTTATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
45052 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATCTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
*
45117 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTTGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
*
45182 TACTAACGTGAATCTCCTTCTCCCACGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * * *
45247 CTCGTTTATCACATTGCCAAGGACGTCTGAGAAGTAAATGGCTTGAATTCATGGAAGCAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* * * *
45312 CACAAGACTTCATCTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTAAGACCTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
*
45377 CTCTTCATCTTCATTGAATCAGCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
*
45442 TCAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* * * * * *
45507 TACGTTCATTGAAACTTCCGTTTCTTTATATTGTTTGAATTTTGAATGTAGAATGATCGTACTTT
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* * **
45572 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* * * * *
45637 TTTGATTCATCATTTTGTAATGGTATGGCATTTGGAATAACCTGCAAATCAAACGAAAGAATAGC
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
* * *
45702 AAGAAAAGATTGGTTTGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
45767 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATACTATCTTTACACTCTTGTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
45832 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
45868 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATCTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
*
45933 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTTGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
45998 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* *
46063 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGGTGGCTTGAATTCACGGAAGTAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
*
46128 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
46193 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
*
46258 TCAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
46323 TAGGTTCATTGAAACTTCCGTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTT
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* ** * **
46388 GAATGTCAAAGAGCACATGTTTTGGAATACAAAATGTTACAAAATTTGGAACTTCAATGTACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* * *
46453 TTTGATTCATCAATTTGTAATGGTATTGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
* *
46518 AAGAAAAGATTGATTAGTAGAAAGCAAACTTTATTCTCCTCCCATTATTTTTTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* *
46583 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGCTAT-TATTACACTCTTGTTCTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCT-TTACACTCTTCTTCTTTT
* *
46647 TGAATTCCACTTTCACATTCATGGTTTTCTTCACACT
780 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
46684 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAGATGCCTTTTTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
46749 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
* *
46814 TACGAACATGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* *
46879 CTAGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGTAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
*
46944 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
*
47009 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGTAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* *
47074 TGAAAGAAAATGAAATTATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
47139 TAGGTTCATTGAAACTTCCGTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTT
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* * **
47204 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGCACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* * *
47269 TTTGATTCATCATTTTGTAATGGTATGGCCTTTGGAATAACCTGA-AAAACAAACGAAAGAATAG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCT-ACAAATCAAACGAAAGAATAG
* * * *
47333 CAAGAAAAGATTGGTTTGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATTCTCAT
650 GAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCAT
* * *
47398 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTATCTTTACACTCTTGTTCTTTT
715 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTT
47463 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
780 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
47500 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATCTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
* *
47565 TACATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTTGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
* * *
47630 TACTAATGTGAATCTCCTTCTCCCACGGATGAATGAATAATGATTTAAAAACCCATCATACAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
47695 CTCGTTTATCACATTGCCAAGGACGTCTGAGAAGTAGATGGCTTGAATTCATGGAAGCAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* *
47760 CACAAGACTTCATCTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
* *
47825 CTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAACTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* * *
47890 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCCATTTAAGGTCCTCGTTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
*
47955 TAGGTTCATTGAAACTTCCATTT-TCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTT
456 TAGGTTCATTGAAACTTCCATTTCT-TTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTT
*
48019 CGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAA
520 CGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAA
* * *
48084 ATTTGATTCATTAATTTGCGATGCTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAG
585 ATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAG
48149 GAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCAT
650 GAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCAT
* *
48214 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATGCTCTCTTTACACTCTTCTTCTTTT
715 GTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTT
*
48279 TGAGTTCCACTCTCACATTTATGGTTTTCTTCACACT
780 TGAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
48316 CATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
48381 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
48446 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
48511 CTCGTTTATCACAGTGCCATGGACGTCCGAGAAGTAGATTGCTTGAATTCACGGAAGCAAAATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
* *
48576 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCATGTACTTGCACTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
*
48641 CTCATCATCTTCATTGAATCATCATTCTAAAAAATAAA-CAAAGTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* * *
48705 TCAAAGAAAATGAAATAATAAATTTAATGAATGAATGAATTTGTCCGTTTGAGGTCCTAATTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
48770 TAGGTTCATTGAAACTTCCGTTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTT
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
* * **
48835 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACTTTTGGAACTTCAATGTACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* * * *
48900 TTTGATTCATCATTTTGTAATGGTATGGCCTTTGGAATAACCTGCAAATCAAACGAAAGAATAGC
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
* * * *
48965 AAGAAAAG-TTGGTTTGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTATCTCATTCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* * * *
49029 TCCCTATTGAAATTTCTCTTCTTCATACTCCTCCCGTATACTATCTTTACACTCTTGTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
49094 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
*
49130 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATCTTCATTT
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
*
49195 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTTGCATTGG
66 TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
* *
49260 TACTAACGTGAATCTCCTTCTCCCACGGATGAATGAATAATGATTTAAACACCCATCATGCAATG
131 TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
* * *
49325 CTCGTTTATCACATTGCCAAGGACGTCTGAGAAGTAGATGGCTTGAATTCATGGAAGCAACATCA
196 CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
** * *
49390 CACAAGACTTCAAGTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTTCTAA
261 CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
* *
49455 CTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCAAACTTAGAAGTAGATAATTCAAAA
326 CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
* *
49520 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCCGTTTAAGGTCCTCGTTGGA
391 TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
* *
49585 TAGGTTCATTGAAACTTCCATTTCCTTAGATTGTTTGAACTTTGAATGTAGAATGAACATACTTC
456 TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
*
49650 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAATTTCAATAAACAAA
521 GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
* *
49715 TTTGATTCATTAATTTGCGATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
586 TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
49780 AA-AAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
651 AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
* * * *
49844 TCCCTTTTGAAATTTCTCTTCTTTATACTCCTTTCGTATGTTCTCTTTACACTCTTCTTCTTTTT
716 TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
*
49909 GAGTTCCACTCTCACATTTATGGTTTTCTTCACACT
781 GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
* *
49945 CATTCTATTCAATATTCTCATTTTGAACTACTCCAAATGCCTTTGTTTTCTCTCAA
1 CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAA
50001 ATAAAAAAAA
Statistics
Matches: 10139, Mismatches: 499, Indels: 37
0.95 0.05 0.00
Matches are distributed among these distances:
811 778 0.08
812 2 0.00
813 1 0.00
814 496 0.05
815 741 0.07
816 8115 0.80
817 6 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (816 bp):
CATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTT
TGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGGCATTGG
TACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGCAATG
CTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAACATCA
CACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTATGACTTCTAA
CTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGCAAAGTTAGAAGTAGATAATTCAAAA
TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCCGTTTAAGGTCCTCATTGGA
TAGGTTCATTGAAACTTCCATTTCTTTAGATTGTTTGAACTTTGAATGTAGAATGAACGTACTTC
GAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACAACCTTTGCAACTTCAATAAACAAA
TTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAACCTACAAATCAAACGAAAGAATAGG
AAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTCCCATTATTTTCTCTCATGCTCATG
TCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGCTATCTTTACACTCTTCTTCTTTTT
GAGTTCCACTCTCACATTCATGGTTTTCTTCACACT
Found at i:51406 original size:816 final size:815
Alignment explanation
Indices: 49999--55123 Score: 8107
Period size: 816 Copynumber: 6.3 Consensus size: 815
49989 GTTTTCTCTC
** * *
49999 AAATAAAAAAAAGTTAGAAGCAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTAATGAA
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
* *
50064 TGAATAAATTTGTCCGTTTGAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
*
50129 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACA
131 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
* *
50194 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGTAATGGTATTGCCT
196 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAT-AATTTGCAATGGTATGGCCT
*
50259 TTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAATATTGATTAGTAGAAAGCAAACTT
260 TTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTT
50324 CATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCC
325 CATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCC
* * *
50389 TCCCGTATGCTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTTTCACATTCATGGTTTTCTTT
390 TCCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTC
*
50454 ACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTT
455 ACACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTT
* *
50519 CATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGGTCTTGAAGTACTTGGTGTGGTGGC
520 CATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGGC
*
50584 ATTGGTACTAACGTGAATCTCCTTATCCCATGGATGAATGAATAATGATTTAAAAACCCATCATG
585 ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATG
* *
50649 CAATGCTCATTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCACGGAAGCAA
650 CAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCAA
* *
50714 CATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAGGTACTTGCTCTAAGACT
715 CATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACT
*
50779 TCTAACTCTTCATCTTCATTGAATCATCATTCTTAA
780 TCTAACTCTTCATCTTCATTGAATCATCATTCTGAA
50815 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
** *
50880 TGAATGAATTTGTTTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCGTTTCTTTAGAT
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
*
50945 TGTTTGAACTTTGAATGTAGAATGAACGTACTTTGAATGTCAAAGAGCACATGTTTTGGAATACC
131 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
*
51010 AAATGTTACAACTTTTGGAACTTCAATGTACAAATTTGATAT-ATAATTTTGCAATGGTATGGCC
196 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGAT-TCATAA-TTTGCAATGGTATGGCC
* * * *
51074 TTTGGAATAACCTACAAATCAAACGAAAGAATAGCAAGAAAAGATTGATTAGTAGATAGCAAAAT
259 TTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACT
* *
51139 TCATTCTCCTCCCATTATTTTCTCTCATTCTGATGTCCCTTTTGAAATTTCTCTTCTTCATACTC
324 TCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTC
* * *
51204 CTCCCGTATACTATCTTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCATGGTTTTCTT
389 CTCCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTT
*
51269 CACACTCATTCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGT
454 CACACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGT
*
51334 TCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGGTGG
519 TCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGG
*
51399 CATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAACGAATAATGATTTAAAAACCCATCAT
584 CATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCAT
* **
51464 GCAATGCTCGTTTATCACATTGCCAAGGACGTTTGAGAAGTAGATGGCTTGAATTCATGGAAGCA
649 GCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCA
* *
51529 ACATCACACAATACTTCATCTTCATATCGCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGAC
714 ACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGAC
* *
51594 TTATAAATCTTCATCTTCATTGAATCATCATTCTGAA
779 TTCTAACTCTTCATCTTCATTGAATCATCATTCTGAA
51631 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
* * *
51696 TGAATGCATTTGTCCGTTTAAGGTCCTCGTTGGATAGGTTCATTGAAACTTCCATTTCCTTAGAT
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
**
51761 TGTTTGAACTTTGAATGTAGAATGAATATACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
131 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
* * * ** * * *
51826 AAATGTTACAACCTTTGCAATTTCAATAAATAAATTTGATTCATTAATTTGCGATGCTATGGCCT
196 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCA-TAATTTGCAATGGTATGGCCT
* *
51891 TTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGCAGAAAGAAAACTT
260 TTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTT
* *
51956 CATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTTTCTTCTTCATAATCC
325 CATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCC
** * * * *
52021 TCTTGTATGCTCTCTTTACACTCTTGTTATTTTTGAGTTCCACTCTCTCATTCATGATTTTCTTC
390 TCCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTC
* * * *
52086 ACACTCAATCTCTGCAATATTCTCATTTTCAACTACTCCAAATGCTTTTCTTTCCTCTCAATGTT
455 ACACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTT
* * * **
52151 CTTTTTGCATAGCATCAAAGTTTTTCTTAAGTTATTGTTAATCTTGAAGTACTTTATGTGATGGC
520 CATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGGC
* * * * * ** *
52216 TATT-GTTCTAACATGATTTTCCTTCTCCCATGTATGAATGAATAATGATTTAAGGACCAATCAT
585 -ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCAT
* * * *
52280 GTAATTCTCGTTTATCACACAT-CCAAGGACGTCCGAGAAGTAAATGGCTTGAATTCATGGAAGC
649 GCAATGCTCGTTTATCACA-GTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGC
* * * * * * *
52344 AACATCACAGAAGACTTCATCTTTATATATCCGAATTGGAAAGGGCACAAGTACTTGTTCTATGA
713 AACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGA
52409 CTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAA
778 CTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAA
* *
52447 AAATAAAGCAAAGTTATAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATCAATTTCATGAA
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
* * ** * * * * *
52512 TAAATAAATTTGTTTGTTTAAGGTTCTCATTGGATAGGTTTATTGAAACATCCCTTTCTTGAGAT
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
* * * *
52577 TGTTTGAACTTTGAATTTAGTATGAACGTGCTTTGAATGTCAAAGAGCACATGTTTTGGAATACC
131 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
*
52642 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTCA-TC--AATTTGCAATGGTATGGCCTT
196 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATAATTTGCAATGGTATGGCCTT
* *
52704 TGGAATAACCTGCAAATCAAACGAAAGAATGGGAAGAAAAGATTGATTCGTAGAAAGCAAACTTC
261 TGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTC
* *
52769 ATTCACATCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
326 ATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
* * *
52834 CTCGTATACTCTCTTTACACTCTTGTTCTTTTTTAGTTCCACTATCACATTCATGGTTTTCTTCA
391 CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCA
52899 CACAT-AATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTT
456 CAC-TCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTT
* * * * * * * *
52963 CTTTTTACATAGCGTCTAAGTTTTCCTTAAGTTATTGTTAATCTTGAAGTACTTTGTGTGATGGC
520 CATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGGC
* * * * **
53028 AATT-GTACAAAAGTGATTCTCCTTCTCCCATGTATGAATGAATAATGATTTAAGGA-CCATTCA
585 -ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCA-TCA
* * * * * * * *
53091 TGTAATTCTCGTTTATCACACTTCCAAGGATGTCCGAGTAGTAAATAGCTTGAATTCATGGAAGC
648 TGCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGC
* * * ** * * * *
53156 AACATCACAGAAAACTTCATCTTTATATCTCTGAATAGAAAAGGGCACAAATACTTGTTCTATGA
713 AACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGA
*
53221 CTTGTAACTCTTCATCTTCATTGAATCATCATTCTGAA
778 CTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAA
* *
53259 AAATAAAGCAAAGTTATAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATCAATTTCATGAA
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
* ** * * * * * * *
53324 TAAATGAATTTGTTTGTTTAAGATTCTCATTGGATATGTTTATTGAAACATCAATTTCTTGAGAT
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
* *
53389 TGTTTGTACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACA
131 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
* * *
53454 AAATATTACAACATTTGGAACTTCAATATACAAATTTCA-TC--AATTTGCAATGGTATGGCCTT
196 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATAATTTGCAATGGTATGGCCTT
* * *
53516 TGGAATAACCTGCAAATCAAACGAAAGAATATGAAGAAAAGATTGATTAGTTGAACGCAAACTTC
261 TGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTC
53581 ATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
326 ATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
*
53646 CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCC
391 CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCA
*
53711 CACTCAATCTCTTCAATATTCTCATTTTCAAGTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
456 CACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
* *
53776 ATTTTGCATAACATCAAAGTTTTTCCTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGGCA
521 ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGGCA
* *
53841 TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCTATCATGG
586 TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
*
53906 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATTGAAGCAAC
651 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCAAC
*
53971 ATCACACAAGACTTCATCTTCATATCTCCAAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTT
716 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTT
* *
54036 CTAACTCTTCATCTTCATTAAATCATCATTATGAA
781 CTAACTCTTCATCTTCATTGAATCATCATTCTGAA
* *
54071 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATAAAAGAAAATGAAATAAAAAATTTCATGAA
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
*
54136 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATT-ATAACTTCCCTTTCTTTAGA
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGA-AACTTCCATTTCTTTAGA
* * *
54200 TTGTTTGAACTTTGAATGTAGAATGAACGTAATTTGAATGTCAAAGAGCACATGTTTTGGAGTAC
130 TTGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATAC
*
54265 AAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCC
195 CAAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCAT-AATTTGCAATGGTATGGCC
** * * *
54330 TTCAGAGTAACTTGCAAATCAAATGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACT
259 TTTGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACT
*
54395 TCATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTC
324 TCATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTC
54460 CTCCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTT
389 CTCCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTT
*
54525 CCCACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGT
454 CACACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGT
* * *
54590 TCATTTTGCATAGCATCAATGTTTTTCTTAAGTTGTTGTTTATCTTGAAGTACTTAGTGTGATGG
519 TCATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGG
* *
54655 CATTGGTGCTAACGTAAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCAT
584 CATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCAT
* *
54720 GGAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGGTTGAATTCATGGAAGCA
649 GCAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCA
* *
54785 ACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTATTTTCTCTATGAC
714 ACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGAC
* * *
54850 TACTAACTCTTCATCGTCATTGAATCATAATTCTGAA
779 TTCTAACTCTTCATCTTCATTGAATCATCATTCTGAA
* *
54887 AAATAAAGCAAAGTTAGAAGTAGATATTTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAT
1 AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
* *
54952 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTAAGAT
66 TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
* **
55017 TGTTTGAACTTTGAATGTAGAATGAACGTGCTTCGAATGTCAAAGAGCACATGTTTCAGAATACC
131 TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
* *
55082 AAATGTTACGACATTTAGAACTTCAATGTACAAATTTGATTC
196 AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTC
55124 TCCTCCCATT
Statistics
Matches: 3983, Mismatches: 308, Indels: 36
0.92 0.07 0.01
Matches are distributed among these distances:
811 8 0.00
812 1475 0.37
813 5 0.00
815 5 0.00
816 2481 0.62
817 9 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (815 bp):
AAATAAAGCAAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAA
TGAATGAATTTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCATTTCTTTAGAT
TGTTTGAACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC
AAATGTTACAACATTTGGAACTTCAATGTACAAATTTGATTCATAATTTGCAATGGTATGGCCTT
TGGAATAACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTC
ATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCA
CACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
ATTTTGCATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTGGTGTGATGGCA
TTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGC
AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCAAC
ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTT
CTAACTCTTCATCTTCATTGAATCATCATTCTGAA
Found at i:55783 original size:722 final size:723
Alignment explanation
Indices: 54397--55812 Score: 2406
Period size: 722 Copynumber: 2.0 Consensus size: 723
54387 AGCAAACTTC
54397 ATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
1 ATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
* *
54462 CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCC
66 CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTACACTATCACATTCATGGTTTTCTTCA
*
54527 CACTCAATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTC
131 CACTCAATCTCTTCAATATTCTCATTTTCAACTACACCAAATGCCTTTGTTTTCTCTCAATGTTC
*
54592 ATTTTGCATAGCATCAATGTTTTTCTTAAGTTGTTGTTTATCTTGAAGTACTTAGTGTGATGGCA
196 ATTTTGCATAGCATCAATGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTAGTGTGATGGCA
* * *
54657 TTGGTGCTAACGTAAATCTCCTTCTCCCATGGATGAATGAATAATGATTTAAAAACCCATCATGG
261 TTGGTACTAACGTAAATCTCCTTCTCCCATGAATGAATGAATAATGATTTAAAAACCCATCATGC
*
54722 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGGTTGAATTCATGGAAGCAAC
326 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCAAC
* *
54787 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTATTTTCTCTATGACTA
391 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTA
* *
54852 CTAACTCTTCATCGTCATTGAATCATAATTCTGAAAAATAAAGCAAAGTTAGAAGTAGATATTTC
456 CTAACTCTTCATCGTCATTGAATCATAATTCTGAAAAATAAAGAAAAGTTAGAAGTAGATAATTC
* *
54917 AAAATCAAAGAAAATGAAATAATAAATTTCATGATTGAATGAATTTGTCCGTTTAAGGTCCTCAT
521 AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCAGTTTAAGGTCCTCAT
* * * *
54982 TGGATAGGTTCATTGAAACTTCCCTTTCTTAAGATTGTTTGAACTTTGAATGTAGAATGAACGTG
586 TGGATAGGTTCATTGAAACTTCCATTTCTTAAGATTGTTTGAACTTTGAATGTAGAATCAACATA
55047 CTTCGAATGTCAAAGAGCACATGTTTCAGAATACCAAATGTTACGACATTTAGAACTTCAATGTA
651 CTTCGAATGTCAAAGAGCACATGTTTCAGAATACCAAATGTTACGACATTTAGAACTTCAATGTA
55112 CAAATTTG
716 CAAATTTG
*
55120 ATTCTCCTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
1 ATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
* * *
55185 CCCGTATGCTCTCTTTACACTTTTTTTCTTTTTGAGTTACACTCTCACATTCATGGTTTTCTTCA
66 CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTACACTATCACATTCATGGTTTTCTTCA
* *
55250 CACTCATTCTCTTCAATATTCTTATTTTCAACTACACCAAATGCCTTTGTTTTCTCTCAATGTTC
131 CACTCAATCTCTTCAATATTCTCATTTTCAACTACACCAAATGCCTTTGTTTTCTCTCAATGTTC
* * *
55315 ATTTTGCATAGCATCAATGTTTTTCTTCAGTTGTTGTTGATCTTGAAGTACTTGGTG-GGTGGCA
196 ATTTTGCATAGCATCAATGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTAGTGTGATGGCA
*
55379 TTGGTACTAACGTGAATCTCCTTCTCCCATGAATGAATGAATAATGATTTAAAAACCCATCATGC
261 TTGGTACTAACGTAAATCTCCTTCTCCCATGAATGAATGAATAATGATTTAAAAACCCATCATGC
* ** * *
55444 AATGCTCGTTTATTATTGTGCCAAGGACGTCTGAGAGGTAGATGGCTTGAATTCATGGAAGCAAC
326 AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCAAC
* *
55509 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGTGCAAGTACTTGCTCTATGACTT
391 ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTA
* * *
55574 CTACCTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGAAAAGTTAGAAGTAGATAATT-
456 CTAACTCTTCATCGTCATTGAATCATAATTCTGAAAAATAAAGAAAAGTTAGAAGTAGATAATTC
* **
55638 AAAATTCAAAGAAAATGAAATAATAAATTTCATGAATGAATGCATTTGTCAGTTTAAGGTCCTTG
521 AAAA-TCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCAGTTTAAGGTCCTCA
55703 TTGGATAGGTTCATTGAAACTTCCATTTCCTT-AGATTGTTTGAACTTTGAATGTAGAATCAACA
585 TTGGATAGGTTCATTGAAACTTCCATTT-CTTAAGATTGTTTGAACTTTGAATGTAGAATCAACA
**
55767 TACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTAC
649 TACTTCGAATGTCAAAGAGCACATGTTTCAGAATACCAAATGTTAC
55813 AACCTTTTCA
Statistics
Matches: 648, Mismatches: 43, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
721 4 0.01
722 401 0.62
723 243 0.38
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (723 bp):
ATTCTCCTCCAATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCT
CCCGTATGCTCTCTTTACACTCTTGTTCTTTTTGAGTTACACTATCACATTCATGGTTTTCTTCA
CACTCAATCTCTTCAATATTCTCATTTTCAACTACACCAAATGCCTTTGTTTTCTCTCAATGTTC
ATTTTGCATAGCATCAATGTTTTTCTTAAGTTGTTGTTGATCTTGAAGTACTTAGTGTGATGGCA
TTGGTACTAACGTAAATCTCCTTCTCCCATGAATGAATGAATAATGATTTAAAAACCCATCATGC
AATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGGCTTGAATTCATGGAAGCAAC
ATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGCAAGTACTTGCTCTATGACTA
CTAACTCTTCATCGTCATTGAATCATAATTCTGAAAAATAAAGAAAAGTTAGAAGTAGATAATTC
AAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATTTGTCAGTTTAAGGTCCTCAT
TGGATAGGTTCATTGAAACTTCCATTTCTTAAGATTGTTTGAACTTTGAATGTAGAATCAACATA
CTTCGAATGTCAAAGAGCACATGTTTCAGAATACCAAATGTTACGACATTTAGAACTTCAATGTA
CAAATTTG
Found at i:60591 original size:815 final size:816
Alignment explanation
Indices: 59013--64195 Score: 8220
Period size: 816 Copynumber: 6.4 Consensus size: 816
59003 GCCTTACATC
* * *
59013 AAGTACTTTGTGTGATGGCAATT-GTACTAACGTGATTCTCCTTCTCCCATGTATGAATGAATAA
1 AAGTACTTGGTGTGATGGC-ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
** * * * *
59077 TGATTTAAGGACCCATCATGTAATTCTCGTTTATCACACTTCCAAGGACGTCCGAGAAGTAAATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATG
* * * *
59142 GCTTGAATTCATGGAAGAAACATCACAGAAGACTTCATCTTTATATCTCCCAATTGAAAAGGGCA
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
* **
59207 CAAGTACTTGTTCTATGACTTCTAAAACTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
*
59272 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATCAATTTCATGAATAAATGAAT
260 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATAAATGAAT
* * * *
59337 TTGTTTGTTTAAGGTTCTCAATGGATAGGCTT-ATTGACACATT-CCTTTCTTGAGATTGTTTGA
325 TTGTCTGTTTAAGGTCCTCATTGGATAGG-TTCATTGAAAC-TTCCCTTTCTTGAGATTGTTTGA
*
59400 ACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCGAATGTT
388 ACTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTT
*
59465 ACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTCGAAT
453 ACAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAAT
59530 AACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTC
518 AACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTC
* *
59595 CTCCCATTATTTTCTCTAATTCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTA
583 CTCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTA
* * * *
59660 TGTTATCTTTACACTCTTGTTCTTTTTGAGTTTCACTATCACATTTATGGTTTTCTTCACACTCA
648 TGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCA
*
59725 ATCTCTTCAATGTTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTG
713 ATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTG
*
59790 CATAGCATCAAAGTTTTTCTTAAGTTGTTATTGATCTTG
778 CATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* *
59829 AAGTAC-TGGTGTGATGGCATTTGTACTAACGTGAATCTCCTACTCCCATGGATGAATGAATAAT
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
* * * *
59893 GATTTAAAAACCCATTATGCAATGCTCGTTTATCACAGTACCAAGGGCATCCGAGAAGTAGATGG
66 GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATGG
* * *
59958 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAGAAGTGTGC
131 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
* *
60023 AAGTACTTGCTCTATTACTTCTAACTCTTTATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
196 AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
* * *
60088 AAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATAAATGAATGAATT
261 AAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATAAATGAATT
* * *
60153 TGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCATTCTTTAGATTGTTTGAACT
326 TGTCTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTGAGATTGTTTGAACT
60218 TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
391 TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
60283 ACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAAC
456 ACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAAC
* * *
60348 CTGCAAATCAAATGAAAGAATATGAAGAAAAGATTGATTAGTTGAACA-CAAACTTCATTCTCCT
521 CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAA-AGCAAACTTCATTCTCCT
* *
60412 CCCATTGTTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATG
585 CCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATG
* *
60477 CTCTCCTTACACTCTTGTTCTTTTTGAGTTCCACTCTCACATTCATGGTTTTCTTCACACTCAAT
650 CTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAAT
* *
60542 CTCTTCAATATTCTCATTTTTAACTACTCCAAATGCCTTTGTTTTCTCTCAATTTTCATTTTGCA
715 CTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCA
*
60607 TAGCATCAAAGTTTTTCTTAAGTTATTGTTGATCTTG
780 TAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* *
60644 AAGTACTTGGTGTGGTGGCATTGGTACTAACGTGAATCTCCTACTCCCATGGATGAATGAATAAT
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
* * * *
60709 GATTTAAAAACCCATTATGCAATGCTCGTTTATCACAGTACCAAGGGCATCCGAGAAGTAGATGG
66 GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATGG
* * *
60774 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAGAAGTGTGC
131 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
* * *
60839 AAGTACTTGCTCTATTACTTCTAACTCTTTATCTTCATTGAATCATCATTTTGAAAAATAAAGCA
196 AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
* * *
60904 ATGTTAGAAGTAGATAATTCAAAATCAAAGAAAATAAAATAATAAATTTCATGAATGAATGAATT
261 AAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATAAATGAATT
* * * * *
60969 TGTCCGTTTAAGGTCCTCATTGGATAGGTTCGTTGAAACTTTCATTTCCTT-AGATTATTTGAAC
326 TGTCTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTT-CTTGAGATTGTTTGAAC
* * * * * *
61033 ATTGAATGTAGAATGAACATACTTCGAATGTCAAAGACCACATGGTTTGGAATTCCAAAATTTTA
390 TTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACC-AAATGTTA
* * * ** * * *
61098 CAACCTTTGCAATTTCAATAAACAAATTTGGTTCATCAATTTGCGATGGTATTGCCTTTGGAATA
454 CAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATA
* *
61163 ACCTGCAAATCAAACAAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGAAAACTTCATTCTCC
519 ACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCC
61228 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAAATTT-TCTTCTTCATACTCCTCTCGTA
584 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTG-AAATTTCTCTTCTTCATACTCCTCTCGTA
* * *
61292 TGCTCTCTTTACACTCTTGTTCTGTTTGAGTTCCACTCTCACATTCATAGTTTTCTTCACACTCA
648 TGCTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCA
* * * *
61357 ATCTCTGCAATATTCTCATTTTCAACTACTCCAAATGCTTTTGTTTCCTCTCAATGTTCTTTTTG
713 ATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTG
* *
61422 CA-ATGCATCAAAGTTTTTCTTAACTTGTTGTTAATCTTG
778 CATA-GCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* * ** * * * *
61461 AAGTACTTTGTATGATGGCAATT-AAACTAACGTGATTCTTCTTCTCCCTTGTATGAATGAATAA
1 AAGTACTTGGTGTGATGGC-ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
** * * * ** *
61525 TGATTTAAGGACCCATCATGTAATTCTCGTTTATCACACTTCCAAGGACGTATGAGAAGTAAATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATG
* * * *
61590 GCTTGAATTCATGGAAGAAACATCACAGAAGACTTCATCTTTATATCTCCCATTTGAAAAGGGCG
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
* * * *
61655 TAAGTACTTGTTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCCGAAAAATAAAAC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
* * *
61720 AAAGTTAGAAATAGATAATTCAAAATCAAAGAAAATGAAAAAAATCAATTTCATGAATAAATGAA
260 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATG-AAATAATAAATTTCATGAATAAATGAA
* * *
61785 TTTGTTTGTTTAAGGTCCTCATTGGATAGGTTTATTGAAACATCCCTTTCTTGAGATTGTTTGAA
324 TTTGTCTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTGAGATTGTTTGAA
* *
61850 CTTTGAATGTAGAATGAACGTACTTCGAATGTGAAAGAGCACATGTTTTGGAATACTAAATGTTA
389 CTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTA
* * * * *
61915 CAACCTTTGGAACGTCAATATACAAATTTGATTCATCAATTTCCAATGGCATGGCCTTTGGAATA
454 CAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATA
* * *
61980 GCCTGCAAATCAAACGAAAGAATATGAAGAAAGGATTGATTAGTAGAAAGCAAACTTCATTCTCC
519 ACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCC
* *
62045 TCCCATTATTTTCTCTCATGTTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTAT
584 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTAT
* * *
62110 G-TACTCTTTACACTCTTGGTATTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCCCACTCA
649 GCT-CTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCA
* * *
62174 ATCTCTTCAATATTATCATTTTCAACTACACCAAATGCCTTTGTTTTCTCTCAATATTCATTTTG
713 ATCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTG
62239 CATAGCATCAAAG-TTTTCTTAAGTTGTTGTTGATCTTG
778 CATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* *
62277 AACTACTTCGG-GTGATGGAATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
1 AAGTACTT-GGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
* * *
62341 TGATTTAAAAACCCATCATGGAATGCTCGTTTATCACAGTGCCTAGGACGTCCGAGAAGTAGATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATG
* * * *
62406 GCTTGAATTCATTGAAGCAAGATCACACAAGACTTTATCTTCATATCTCCCAATTGAAAGGGGCG
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
* * * *
62471 CAAGTACTTGCTCCAAGACTTCTAACTCTTCATCTTCATTGAATCATCTTTCTAAAAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
* *
62536 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATTATAAATTTCATGAATGAATGAAT
260 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATAAATGAAT
* *
62601 TTGTCTGTTTAAGGTCTTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAAC
325 TTGTCTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTGAGATTGTTTGAAC
*
62666 TTTGAATGTAGAATGAACGTACTT-GAATGTCAAAGAGCACATGTTTTAGAATACCAAATGTTAC
390 TTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTAC
62730 AACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAA
455 AACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAA
*
62795 CCTACAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCT
520 CCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCT
*
62860 CCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTTTCGTATG
585 CCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATG
* * * *
62925 CTCTCTATACACTCTTCTTATTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCCCACTCAAT
650 CTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAAT
*
62990 CTCTTCAATATTCTCATTTTCAAGTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCA
715 CTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCA
*
63055 TAACATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
780 TAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* *
63092 AAGTACTTGGTATGATGGAATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
* * *
63157 GATTTAAAAACCTATCATGGAATGCTCGTTTATCACAGTGCCAAGGACGTCCGAGAAGTAGATGG
66 GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATGG
* * ***
63222 CTTGAATTCATTGAAGCAACATCACACAAGACTTCATCTTCATATCTCCAAATTGAAAAGGGTAT
131 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
* *
63287 AAGTACTTGTTCTATGACTTCTAACTCTTCATCTTCATTGAATCACCATTCTGAAAAATAAAGCA
196 AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
* * *
63352 AAGTTAGAAATAGTTAATTCAAAATCAAAGAAAATGAAATAATCAATTTCATGAATAAATGAATT
261 AAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATAAATGAATT
* * * * *
63417 TGTTTGTTTAAGGTTCTCATTGGATAGGTTTATTGAAACATCCCTTTCTTGAGATTGTTTAAACT
326 TGTCTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTGAGATTGTTTGAACT
*
63482 TTGAATGTAGAATGAACGTATTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
391 TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
* *
63547 ACATTTGGAACTTCAATTTACAAATTTGATTCATGAATTTGCAATGGTATGGCCTTTGGAATAAC
456 ACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAAC
63612 CTGCAAATCAAACGAAAGAAT-GTGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCT
521 CTGCAAATCAAACGAAAGAATAG-GAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCT
63676 CCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATG
585 CCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATG
63741 CTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAAT
650 CTCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAAT
63806 CTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCA
715 CTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCA
*
63871 TAGCATCAAAGTTTTTCTTAAGTTATTGTTGATCTTG
780 TAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* * *
63908 AAGTATTTGGTGTGATGGCATTGGTGCTAACATGAATCTCCTTCTCCCATGGATGAATGAATAAT
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
**
63973 GATTTAAAAACCCATTTTGCAATGCTCGTTTATCACAGTTCCAAGGACG-CCTGAGAAGTAGATG
66 GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCC-GAGAAGTAGATG
* * *
64037 GCTTGAATTCAAGGAAGCAACATCACACAGGACTTCATCTTCATATCTCCCAATTGAAAAGGGCA
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
*
64102 CAAGTACTTGCTCTATTACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
*
64167 AAA-TATAAAAGTAGATAATTCAAAATCAA
260 AAAGT-TAGAAGTAGATAATTCAAAATCAA
64196 GAGTCATGCC
Statistics
Matches: 4020, Mismatches: 322, Indels: 50
0.92 0.07 0.01
Matches are distributed among these distances:
814 362 0.09
815 1267 0.32
816 1358 0.34
817 896 0.22
818 137 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (816 bp):
AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTTCCAAGGACGTCCGAGAAGTAGATGG
CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
AAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATAAATGAATT
TGTCTGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTGAGATTGTTTGAACT
TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
ACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTGGAATAAC
CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCCTC
CCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGC
TCTCTTTACACTCTTGTTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAATC
TCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCAT
AGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
Found at i:69014 original size:815 final size:816
Alignment explanation
Indices: 66746--71067 Score: 6892
Period size: 815 Copynumber: 5.3 Consensus size: 816
66736 GCCTTACATC
* * * * *
66746 AAGTACTTTGTGTGATGGCAATT-GTACTAACGTGATTATCCTTCTCCTATGTATGAATGAATAA
1 AAGTACTTGGTGTGATGGC-ATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
** * * * * * *
66810 TGATTTAAGGACCCATCATGTACTTCTCGTTTATCACACTTCCAAGGACGTCCGAGAAGTAAATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATG
* * * * * **
66875 GCTTGAATTCATGGAAGAAACATCAAAGAAGACTTCATCTTTATATCTCCCAAATGAAAAGGGAA
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
* *
66940 CAAGTACTTGTTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTAAAAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
* * *
67005 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATCAATTTCATGAATAAATGAAT
260 AAAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAAT
** * * * * *
67070 TTGTTTGTTTAAGGTTCTCAATGGATAGGCTT-ATTGACACATCCCTTTCTTGAGATTGTTTGAA
325 TTGTCCGTTTAAGGTCCTCATTGGATAGG-TTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAA
*
67134 CTTTGAATGTAGAATGAACGTACTTCGACTGTCAAAGAGCACATGTTTTGGAATACCAAATGTTA
389 CTTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTA
* *
67199 CAACATTTGGAACTTCAATGTACAAATTTGATTCATCAATTTGCAATGGTATGGCCTTTAGAATA
454 CAACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTATGGCCTTTGGAATA
*
67264 ACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCATTCTCC
519 ACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCGTTCTCC
*
67329 TCCCATTATTTTCTCTAATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTAT
584 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTAT
* *
67394 GCTATCTTTACACTCTTGTTCTTTTTGAGTTTCACTATCACATTCATGGTTTTCTTCACACTCAA
649 GCTATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAA
67459 TCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGC
714 TCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGC
67524 ATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
779 ATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
*
67562 AAGTAC-TGGTGTGATGGCATTGGTACTAACGTGAATCTCCTACTCCCATGGATGAATGAATAAT
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
* *
67626 GATTTAAAAACCCATTATGCAATGCTCATTTATCACAGTACCAAGGACGTCCGAGAAGTAGATGG
66 GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATGG
* **
67691 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAGAAGTCCGC
131 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
* *
67756 AAGTACTTGCTCTATTACTTCTAA-----C-TCTTCATTGAATCATCCTTCTGAAAAATAAAGCA
196 AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
67815 AAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATT
261 AAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATT
**
67880 TGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTACTTGAACT
326 TGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAACT
67945 TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
391 TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
*
68010 ACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTACGGCCTTTGGAATAAC
456 ACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTATGGCCTTTGGAATAAC
68075 CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCGTTCTCCTC
521 CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCGTTCTCCTC
*
68140 CCATTATTTTCTCTCATGCTCATGTCCTTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGC
586 CCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGC
* *
68205 TATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTATCTTCGCACTCAATC
651 TATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAATC
**
68270 TCTTCAATATTCTCATTTTCAACTACTCCAAATGTTTTTGTTTTCTCTCAATGTTCATTTTGCAT
716 TCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCAT
68335 AGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
781 AGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
*
68371 AAGTAC-TGGTGTGATGGCATTGGTACTAACGCGAATCTCCTAT-TCCCATGGATGAATGAATAA
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCT-TCTCCCATGGATGAATGAATAA
*
68434 TGATTTAAAAACCCATTATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATG
* * * *
68499 GCTTGAATTCATGGAACCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAGATGTGCG
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
68564 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
*
68629 AAAGATAGAAGTAGATAATTTAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAAT
260 AAAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAAT
*
68694 TTGTCCGTTTAAGGTCCTCATTGGATAGGTTCAATGAAACTTCCCTTTCTTTAGATTGTTTGAAC
325 TTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAAC
* *
68759 TTTGAATGTAGAAAGAACGTACTTCGAATGTCAAAGAGCGCATGTTTTGGAATACCAAATGTTAC
390 TTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTAC
68824 AACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGT-TCGGCCTTTGGAATA
455 AACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTAT-GGCCTTTGGAATA
*
68888 ACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTTATTAGTAGAAAGCAAACTTCGTTCTCC
519 ACCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCGTTCTCC
68953 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTAT
584 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTAT
* *
69018 GCTATCTTTGCACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCGCACTCAA
649 GCTATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAA
69083 TCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGC
714 TCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGC
69148 ATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
779 ATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* *
69186 AAGTGC-TGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCACGGATGAATGAATAAT
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
* * *
69250 GATTTAAAAACCTATTATGCAATGCTTGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATGG
66 GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATGG
* * * * *
69315 CTTGAATTCATGGAACCAACATAACACAAGACTTCATCTTCATATATCCCAATTGAGAAGTGCGC
131 CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
*
69380 AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCGTCATTCTGAAAAATAAAGCA
196 AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
69445 AAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATT
261 AAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATT
*
69510 TGTCCGTTTAAGATCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAACT
326 TGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAACT
* *
69575 TTGAATGTAAAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAACGTTACA
391 TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
* *
69640 ACATTTTGAACTTCAATGTACAAATTTGATTAATCAATTTTCAATGGTATGGCCTTTGGAATAAC
456 ACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTATGGCCTTTGGAATAAC
*
69705 CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAAAAAGCAAACTTCGTTCTCCTC
521 CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCGTTCTCCTC
* *
69770 CCAATATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCCCGTATGC
586 CCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGC
* * *
69835 TCTCTTTACACTCTTGCTCTTTTTGATTTCCACTCTCACATTCATGGTTTTCTTCACACTCAATC
651 TATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAATC
* * *
69900 TCTTCAATATTCTCATTTTTAACTACTCCAAATGCCTTTGTTTTATCTCAATTTTCATTTTGCAT
716 TCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCAT
69965 AGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
781 AGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
70001 AAGTACTTGGTGTTG-TGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
1 AAGTACTTGGTG-TGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAA
* *
70065 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTGCCAAGGACGTCTGAGAAGTAGATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATG
* *
70130 GCTTGAATTCATGGAAGCAACATCACACAATACTTCATCTTCATATCTCCCAATTGAAAAGGGCT
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
*
70195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTAAATCATCATTCTGAAAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
* * *
70260 AAAGTTAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATCAATTTCATTAATGAATGAAT
260 AAAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAAT
*
70325 TTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCTCTTTCTTTAGATTGTTTGAAC
325 TTGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAAC
* * *
70390 TTTGAATGTAGAATGAACGTACTTCAAATGTTAATGAGCACATGTTTTGGAATACCAAATGTTAC
390 TTTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTAC
* * * ** * * * *
70455 AACCTTTGCAATTTCAATAAATAAATTGGATTCATCAATTTGCAATGGTATGGCGTTTGGAATAA
455 AACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTATGGCCTTTGGAATAA
* * * * *
70520 CCTTCAAATCAAACGAAATAATAAGAAGAAAAGATTGATTAGTAGAGAGCATAA-TTCATTCTCC
520 CCTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCA-AACTTCGTTCTCC
** * ** * *
70584 TTGCATTCTTTTCTCTCATGCTCAAATCCCTTTTGAAATTTCTCTTCTTCACACTCCTCACGTAT
584 TCCCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTAT
* * * * *
70649 GCTCTCTTTACACTATTGTTCTTTTTGAGTTCCACTCTCACATTCATGTTTTTCTT--CA--C-A
649 GCTATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAA
* * *
70709 ---C-TC-A-A---TC----T---CT--T-C-AATGCCTTTGTTTTCTCACAATTTTTCTTTTTG
714 TCTCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAA-TGTTCATTTTG
* * *
70754 TAAAGCATCAAAGTTTTTCTTAAGTTGTTGTCGATCTTG
778 CATAGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
* *
70793 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGATTCTCCTTCT-CCATTGGATGAATGAAAAA
1 AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCA-TGGATGAATGAATAA
* * * * *
70857 TGATTTAAGAACCCATCATGCAATGCTCGTTTATCACACTACCAAGAACGTCCGAGAAATATATG
65 TGATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATG
* * * * * *
70922 GCTTGAATTCGTTGAAGAAACATCACACAAGACTTCATCTTTATATCTCCCAATTAAAAAGGGCA
130 GCTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCG
* * *
70987 CAAGTACTTGCTCTATTACTTCTAACACTTCATCTTCATTGAATCATCATTTTG-AAAATAAAGC
195 CAAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGC
*
71051 AAAGTTAGAAGTAGATA
260 AAAGATAGAAGTAGATA
71068 TTTATGTAAG
Statistics
Matches: 3301, Mismatches: 187, Indels: 61
0.93 0.05 0.02
Matches are distributed among these distances:
791 51 0.02
792 268 0.08
793 1 0.00
795 2 0.00
798 1 0.00
802 2 0.00
805 1 0.00
806 1 0.00
807 2 0.00
808 3 0.00
809 770 0.23
810 1 0.00
811 1 0.00
812 1 0.00
814 7 0.00
815 1541 0.47
816 644 0.20
817 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (816 bp):
AAGTACTTGGTGTGATGGCATTGGTACTAACGTGAATCTCCTTCTCCCATGGATGAATGAATAAT
GATTTAAAAACCCATCATGCAATGCTCGTTTATCACAGTACCAAGGACGTCCGAGAAGTAGATGG
CTTGAATTCATGGAAGCAACATCACACAAGACTTCATCTTCATATCTCCCAATTGAAAAGGGCGC
AAGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTGAATCATCATTCTGAAAAATAAAGCA
AAGATAGAAGTAGATAATTCAAAATCAAAGAAAATGAAATAATAAATTTCATGAATGAATGAATT
TGTCCGTTTAAGGTCCTCATTGGATAGGTTCATTGAAACTTCCCTTTCTTTAGATTGTTTGAACT
TTGAATGTAGAATGAACGTACTTCGAATGTCAAAGAGCACATGTTTTGGAATACCAAATGTTACA
ACATTTGGAACTTCAATGTACAAATTTGATTAATCAATTTGCAATGGTATGGCCTTTGGAATAAC
CTGCAAATCAAACGAAAGAATAGGAAGAAAAGATTGATTAGTAGAAAGCAAACTTCGTTCTCCTC
CCATTATTTTCTCTCATGCTCATGTCCCTTTTGAAATTTCTCTTCTTCATACTCCTCTCGTATGC
TATCTTTACACTCTTGCTCTTTTTGAGTTCCACTATCACATTCATGGTTTTCTTCACACTCAATC
TCTTCAATATTCTCATTTTCAACTACTCCAAATGCCTTTGTTTTCTCTCAATGTTCATTTTGCAT
AGCATCAAAGTTTTTCTTAAGTTGTTGTTGATCTTG
Found at i:77603 original size:814 final size:816
Alignment explanation
Indices: 75468--79366 Score: 6640
Period size: 814 Copynumber: 4.8 Consensus size: 816
75458 TCATATCATA
* * *
75468 TGCTCCTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTTAAACAATCTCAAGAAA-GGAA
1 TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
* * * *
75532 TGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAATTTCATTTATTCATGAAATTGATT
66 -GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATT
* *
75597 ATTTCCTTTTCTTTGATTTTGAATTATCTACTTCTAACTTTTCTTTA-TTTTCAGAATGATGATT
130 ATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATT
* * * * *
75661 CAATGAAGATGATGAGTTAGAAGTTATAGAGCAAGTACTTGCACCCTTTTTAATTGGGAAATATG
195 CAATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATG
75726 AAGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGG
260 AAGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGG
* * * * * * *
75791 TAGTGTGATAACCGGGCATTGCATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGAAA
325 CACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAG
*
75856 GAGAATCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAA
390 GAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAA
**
75921 ACTTTGATGCTATGCAAAACAAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAG
455 ACTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAG
* * * *
75986 ATTATTGAAGATATTGAGTTTGAAGAAAAACATGAATGTGAGAGTGGAACTCAAAAAGAACAAGA
520 AATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGA
*
76051 GTGTAAAGAGAGCATACGTGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
585 GTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGA
* ** * *
76116 GAAAAGAATGCAAGGAGAATGAATTTTACTCTCTACTAATCAATCTTTTCTTCCTATTCTTTCGT
650 GAAAATAATGGGAGGAGAATGAAGTTTGCTCTCTACTAATCAATCTTTTCTTCCTATTCTTTCGT
* *
76181 TTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAATTTGATGAATCAAATTTGTATATTGAA
715 TTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAA
*
76246 GATCCAAATGTTGTAACATTTGGTATTCCAAAACATG
780 GTTCCAAATGTTGTAACATTTGGTATTCCAAAACATG
* *
76283 TGCTCTTTGACATTCGAAGTACATTCATTCTACATTCAATGTTCAAACAATCTAAAGAAAGGGAA
1 TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
76348 GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTA
66 GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTA
76413 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
131 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
* * *
76478 AATGAAGATGAAGAGTTAGAAGTCTTAGAGAAAGTACTTGCGCCCTTTTCAATTGGGAGATATAA
196 AATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATGA
*
76543 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGATGTCCTTGGC
261 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
* *
76608 ACTGTGATAAACGAGCATTGGATGATGGATTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
326 ACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
* * * * * *
76673 AGATTTACATTAGTACCGATGCCATCACACCAAGTAGTTCAAGATCAACGATAACTTAAGAAAAA
391 AGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAA
*
76738 CTTTGATTCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
456 CTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
* * * *
76803 ATATTGAAGAGAATGAGTGTGAAGAAAACCATGAATGTGAGAGTCGAACTCAAAAAGAACAACAA
521 ATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
* * * * *
76868 TGTAAAAAGCGCATATGAGAGGTGTATGAAAAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
586 TGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
* *
76933 AAAATAAT-GGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTA
651 AAAATAATGGGAGGAGAATGAAGTTTGCTCTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTT
*
76997 TGATTTACAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAG
716 TGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAG
* *
77062 TTCCAAATGTTGTAACATTTGGTATTCGAAAATATG
781 TTCCAAATGTTGTAACATTTGGTATTCCAAAACATG
* *
77098 TGCTCTTTGAAATTTGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
1 TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
* *
77163 GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTAATGAAATTGATTA
66 GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTA
*
77228 TTTCATTTTCTTTGATTTTGAATGATCTACTTCTAACTTTGCTTTA-TTTTCAGAATGATGATTC
131 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
*
77292 AATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAA
196 AATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATGA
*
77357 AGATGAAGTCTTGTGTGATGTTTCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
261 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
77422 ACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
326 ACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
* * *
77487 AGATTCACGTTAGTACCAATACCATCACACCAAGTACTTCAAGATCAACTACAGCTTAAGAAAAA
391 AGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAA
** *
77552 CTTTGATGCTATGCAAAATGAACATTGCCAAAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
456 CTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
* ** *
77617 ATATTGAAGATATTGAGTGTGAAGAAAACCATGAATAAGAGAGTGGAGCTCAAAAAGAACAAGAG
521 ATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
*
77682 TGTAAAGAGAGCATACAAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
586 TGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
*
77747 AAAATAATGGGAGGAGAATGAAGTTTGCTCTCTACTAATCAATCTTTTCTTCATATTCTTTCGTT
651 AAAATAATGGGAGGAGAATGAAGTTTGCTCTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTT
* *
77812 TGATTTGCAGGTTATTCCAGAGGCTATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAG
716 TGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAG
77877 TTCCAAATGTTGTAACATTTGGTATTCCAAAACATG
781 TTCCAAATGTTGTAACATTTGGTATTCCAAAACATG
77913 TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
1 TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
* * *
77978 GTTTCAGTGAACCTATCCAATGAGGACCTTAAACAGACAAATTCATTCATTCAAGAAATTTATTA
66 GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTA
78043 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
131 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
* * *
78108 AATGAAGATGAGGAGTTAGAAATCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGATATATGA
196 AATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATGA
78173 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
261 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
* *
78238 ACTGTGATAAACGAGTATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGGGAAGG
326 ACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
* * *
78303 AGATTCACATTAGTACCAATGCCATCACACCAAGTACTTCCATATCAACAACAACTTAAGAAAAA
391 AGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAA
*
78368 CTTTGATGCTATGCAAAATG-ACATTGAGAGAAAACAAAGGTATTTGGAGTAGTT-AAAATGAGA
456 CTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
*
78431 ATATTGAAGAGAATGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
521 ATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
*
78496 TGTAAAGAGAGTATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
586 TGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
* *
78561 AAAATAATGGGAGGAGAATTAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTT
651 AAAATAATGGGAGGAGAATGAAGTTTGCTCTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTT
* *
78626 TGATTTGCAGGTTATTCCAAAGGCCATGCCATTACAAATTGATGAATCAAATTTGTACATTGAAG
716 TGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAG
*
78691 TTCCAAATGTTGTAACATTTGGTATTCCAAAACTTG
781 TTCCAAATGTTGTAACATTTGGTATTCCAAAACATG
* *
78727 TGCTCTTTAACATTCGAAGTACGTTCACTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
1 TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
* *
78792 GTTTCAATGAACCTATCCAATGAGGACCTTAAATGGACAAATTCATTCATTCGTGAAATTTATTA
66 GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTA
*
78857 TTTAATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
131 TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
* **
78922 AATGAAGATGAAGAGTTAGAAGTCATAGAGCTAGTACTTGCGCCCTTTTCAATTATGAGATATGA
196 AATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATGA
78987 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
261 AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
* * * *
79052 ACTATGATAAACGAGCATTGCATGATGGGTTTTAAAATCATTATTCATTAATCCATGGGAGAAAG
326 ACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
*
79117 AGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAATAAAAA
391 AGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAA
* * *
79182 ATTAGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATTAGA
456 CTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
79247 ATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
521 ATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
*
79312 TGTAAAGAGAGCATACGAGAGGAGTATAAAGAAGAGAAATTTCAAAAGGGACATG
586 TGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATG
79367 TGATGTGTTC
Statistics
Matches: 2894, Mismatches: 184, Indels: 11
0.94 0.06 0.00
Matches are distributed among these distances:
814 1188 0.41
815 854 0.30
816 852 0.29
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (816 bp):
TGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA
GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTA
TTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC
AATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATGA
AGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGC
ACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGG
AGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAA
CTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGA
ATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAG
TGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGGACATGAGCATGAGAG
AAAATAATGGGAGGAGAATGAAGTTTGCTCTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTT
TGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAG
TTCCAAATGTTGTAACATTTGGTATTCCAAAACATG
Found at i:79528 original size:22 final size:22
Alignment explanation
Indices: 79502--79543 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
79492 TATTTATAGT
* *
79502 TATGATGATGATATTATGAATG
1 TATGAAGATAATATTATGAATG
*
79524 TATGAAGTTAATATTATGAA
1 TATGAAGATAATATTATGAA
79544 CCACATATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (22 bp):
TATGAAGATAATATTATGAATG
Found at i:80774 original size:35 final size:35
Alignment explanation
Indices: 80672--80786 Score: 117
Period size: 35 Copynumber: 3.3 Consensus size: 35
80662 ACTACCTAAA
* * *
80672 CATCACCATCTTC-CATCTCCATTTTCACGCCTATAG
1 CATCACCATCTTCTAAT-ACCA-TTTCACGCCTATAT
* *
80708 CATCACCATCTTCTAATACCATTACATGCCTATAT
1 CATCACCATCTTCTAATACCATTTCACGCCTATAT
* **
80743 CATTACCATCTTCT-ATCAGTATTTCACGCCTATAT
1 CATCACCATCTTCTAAT-ACCATTTCACGCCTATAT
80778 CATCACCAT
1 CATCACCAT
80787 TCCCTTACCA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
34 2 0.03
35 46 0.70
36 16 0.24
37 2 0.03
ACGTcount: A:0.27, C:0.34, G:0.04, T:0.35
Consensus pattern (35 bp):
CATCACCATCTTCTAATACCATTTCACGCCTATAT
Found at i:81184 original size:13 final size:12
Alignment explanation
Indices: 81160--81197 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
81150 GCTGCAACAA
81160 AAAGAAAAAAAG
1 AAAGAAAAAAAG
81172 AAAGAAGAAAAAG
1 AAAGAA-AAAAAG
81185 -AA-AAAAAAAG
1 AAAGAAAAAAAG
81195 AAA
1 AAA
81198 AAGACTCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.25
11 4 0.17
12 8 0.33
13 6 0.25
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:81458 original size:17 final size:17
Alignment explanation
Indices: 81400--81459 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
81390 GAGTTGTAAG
*
81400 TTATCTTCACTTTC-TTA
1 TTAT-TTCATTTTCTTTA
*
81417 CTATTTCA-TTTCTTTA
1 TTATTTCATTTTCTTTA
* * *
81433 TTCTTTCATTTTTTTTC
1 TTATTTCATTTTCTTTA
81450 TTATTTCATT
1 TTATTTCATT
81460 ACTATATCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
15 4 0.11
16 13 0.37
17 18 0.51
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTTCATTTTCTTTA
Found at i:87192 original size:816 final size:816
Alignment explanation
Indices: 85621--91421 Score: 8781
Period size: 816 Copynumber: 7.1 Consensus size: 816
85611 CCATACATCA
*
85621 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTTCTTTCTACTAATCAATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
* *
85686 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCAGACCATTGCAAATTGATGAATCAT
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
*
85751 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTTGTATTCCAAAACATGTGCTCTTTGACATT
131 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
* * * * *
85816 TGAAGTATGTTCATTCTACATTCAAAGTTTAAACAATCTAAAGAAAGGGGAGTTTCAATGAACCT
196 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAATAAACCT
* *
85881 ATCAAATGAGGACCTTAAACGGACAAATTCATTCATTCATGAAATTTATTATTTCATTTTCTTTG
261 ATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTTCATTTTCTTTG
*
85946 ATTTTGAATTATCTACTTCTAACTTTGCATTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
326 ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
* * * * *
86011 GTTAGAAGTCATAGTGCAAGTACTTGTGCCCTTTTCAATTGGGAGATATGAAGATGAAGTCTTGT
391 GTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTCT
* * * * * *
86076 GTGATGTTGGTTCCATGAATTTAAGCCATCTACTTCTCAGACGTACTTGGTACTGTGATAAACGA
456 GTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGATAAACGA
* * *
86141 GCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATAGGAGAAGGAGATTCATGTTAGT
521 GCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAGT
*
86206 ACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTACGC
586 ACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTATGC
*
86271 AAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGAAT
651 AAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATT
* * *
86336 GAGTGCGAAGAAAACCCTGAATGTGAGAGTGGAACTAAAAAAGAACAAGAGTGTAAAGAGAGCAT
716 GAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCAT
* *
86401 ACGAGAGGAGTATTAAGAAGAGAAATTTCAGAAGGG
781 ACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
** *
86437 ACATGAGCATGAGAGAAAATAATAAGAGGAGAATGAAATTTGCTTTCTACTAATCAATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
* * * *
86502 TCCAATTCTTTCATTTGATTTGCAGGTTATTCCAAAGGACATACCATTACAAATTGATGAATCAA
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
86567 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
131 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
* * * *
86632 TGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTTAATGAACAT
196 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAATAAACCT
* *
86697 ATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCGTGAAATTTATTATTTCATTTTCTTTG
261 ATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTTCATTTTCTTTG
86762 ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
326 ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
* * * * * *
86827 GCTAGAAGTCATACAGCAAGTACTTTCGCCCTTTTCAATTGGGAGATATGAAGATGAAGTCTTGT
391 GTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTCT
* * * * *
86892 GTGACGTTGCTTCCAAGAATTTAAGCCATCTACTTCTCGGACGTCCTTGGTACTGTGATAAACGA
456 GTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGATAAACGA
* *
86957 GCATTGCATGATGGGTTTTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCATGTTAGT
521 GCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAGT
* *
87022 ACCAATTCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTACGC
586 ACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTATGC
* *
87087 AGAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGAAT
651 AAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATT
* * * *
87152 GAGTGCGAAGAAAACCCTGAATGTGAGAGTGGAACTAAAAAAGAACAAGAGTGTAAAGAAAGCAT
716 GAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCAT
* *
87217 ACGAGAGGAGTATTAAGAAGAGAAATTTCAGAAGGG
781 ACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
* *
87253 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAATTTGCTTGCTACTAATCAATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
* * * *
87318 TCCAATTCTTTCATTTGATTTGCAGGTTATTCCAAAGGCCAGACCATTACAAATTGATGAATCAA
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
*
87383 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACTTT
131 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
* *
87448 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAATGAACAT
196 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAATAAACCT
* * * *
87513 ATCCAATGAAGACCTTAAACGGACAAATTCATTCATTCGTGAAATTTATTATTTCATTTTCTTTA
261 ATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTTCATTTTCTTTG
*
87578 ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTAAATGAAGATGAAGA
326 ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
* * * *
87643 GTTAGAAGTTATAGAGCAAGTACTTGTG-CCATTTCAATTGGGAGATATGAAGATGAAGTCTTGT
391 GTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTCT
*
87707 GTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCACTGTGATAAACGA
456 GTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGATAAACGA
* *
87772 GCATTGCATGATGGGTTTTTAAATCATTATTCATTAATCCATGGGAGAAGGAGATTCACGTTAGT
521 GCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAGT
87837 ACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAG-AAAACTTTGATGCTATGC
586 ACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTATGC
* * *
87901 AAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTAAATAGAAT
651 AAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATT
*
87966 GAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTAAAAAAGAACAAGAGTGTAAAGAGAGCAT
716 GAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCAT
*
88031 ACGAAAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
781 ACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
* *
88067 ACATGAGCATGAGAGAAAATAATAGGAGGAGAATGAAGTTTACTTTCTACTAATCAATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
* * * *
88132 TCCTATTCTTTCATTTGATTTACAGGTTCTTCTAAAGGCCATACCATTGCAAATTGATGAATCAA
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
* * * *
88197 ATTTGTACATTTAAGTTCCAAAT-TTTTTACATTTGGTATTCCAAAACATGTGCTCTTTCACATT
131 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
* * * * *
88261 CGAAGTGCGTTCATTCTACAATCAAAGTTCAAACAATCTCAAGAAAAGGG-TGTTTCAATAAAAC
196 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAG-AAAGGGAAGTTTCAATAAACC
** *
88325 TATCCAATGAGGACCTTAAACAAACAAATTCATTTATTCATGAAATTGATTATTTCATTTTCTTT
260 TATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTTCATTTTCTTT
*
88390 GATTTTAAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAG
325 GATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAG
* * * *
88455 AGTTAGAAGTTATAGAACAAGTACTTACGGCCTTTTCAATTGGGAGATATAAAGAGGAAGTCTTC
390 AGTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTC
* * * *
88520 TGTGATGTTGCTTCCATGAATTCAAGCCATTTACTTTTTGGACGTCCTTAGCAATGTGATAAACG
455 TGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGATAAACG
* * * *
88585 AGCATTACATGATGGGTCCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATAACGTTAG
520 AGCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAG
* * *
88650 TA-CAAGTGCCATCACACAAAGTACTTCAAGATTAACAACAACTTAAGAAAAACTTTGACGCTAT
585 TACCAA-TGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTAT
* * * *
88714 GCAAAAAGAAAATTGAGAGAAAACAAAAGCATTTGGAATAGTTGAAAATGAGAATATTGAAGAGA
649 GCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGA
* *
88779 TTGAGTCTTAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAAC---------AAGAGAGC
714 TTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAGC
88835 ATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
779 ATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
* *
88873 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTTCTTTATACTAATCAATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
* *
88938 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGTCATACCATTGCAAATCGATGAATCAA
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
* *
89003 ATTTATACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTAACATT
131 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
* * * *
89068 CGAAGTACGTTCATTCTACATTTAAAGTTCAAACAATCTCAAGAAAAGGG-TGTTTTAATAAACC
196 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAG-AAAGGGAAGTTTCAATAAACC
** *
89132 TATCCAATGAGGACCTTAAACAAACAAATCCATTTATTCATGAAATTGATTATTTCATTTCATTT
260 TATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAA-T--TTA-TT-ATTTCATTT
89197 TCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGA
320 TCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGA
* *
89262 TGAAGAGTTAGAGGTTATAGAACAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAG
385 TGAAGAGTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAG
* * * *
89327 TCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATTTACTTTTCGGACGCCCTTAGCAATGTGAT
450 TCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGAT
* * * *
89392 AAACGAGCATTACATGATGGGTCCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGAATAAC
515 AAACGAGCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCAC
* * *
89457 GTTAGTA-CAATTGCCATCACACAAAGTACTTCAATATTAACAACAACTTAAGAAAAACTTTGAT
580 GTTAGTACCAA-TGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGAT
* * * * *
89521 GCTATGCAAAAAGAAAATTGAGAGAAAACAAAAGCGTTTGGAATAGTTGAAAATGAGAATATTGA
644 GCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGA
*
89586 AGAGATTGAGTTTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAAC---------AAG
709 AGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAG
89642 AGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
774 AGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
*
89685 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTATACTAATCAATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
* * *
89750 TCCTATTCTTTCGTTTGATTTGCAAGTTATTCCAAAGGACATACCATTGCAATTTGATGAATCAA
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
* * *
89815 ATTTGTACATTTAAGTTCCAAATGTTTTAACATTTGGTATTCCAAAACATGTGCTCTTTAACATT
131 ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
* *
89880 CGAAGTACGTTTATTCTACATTCAAAG--------ATC---AG--A---ATGTTTCAATAAACCT
196 CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAATAAACCT
** * *
89929 ATCCAATGAGGACCTTAAACAAACAAATTCATTTATTCTTGAAATTGATTATTTCATTTTCTTTG
261 ATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTTCATTTTCTTTG
* *
89994 ATTTTGAATTATCTACTTCTAACTTTGCTTTGTTTTTTAGAATGATGATTCAATGAAGATGAAGA
326 ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
*
90059 GTTAGAA-TTCATAGAACAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTC
391 GTTAGAAGTT-ATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTC
* *
90123 TGTGATGTTGCTTCCATGAATTCAAGCAATATACTTCTCGGACGTCCTTGGCAATGTGATAAACG
455 TGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGATAAACG
* * * * *
90188 AGCATTGCATGATGGGTCCTTAAATCATTATTCATTCATCCATGAGAGAATGAGAATCACATTAG
520 AGCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAG
* * * *
90253 TA-CAATTACCATCACACAAAGTACATCAAGATTAACAACAACTTAAGAAAAACTTTGATGCTAT
585 TACCAA-TGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTAT
* * *
90317 GCAAAACT-AACATTGAGAGAAAATAAAAGCTTTTGGAGTAGTTGAAAATGAGAATATTGAAGAG
649 GCAAAA-TGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAG
* * *
90381 ATTGGGTGTGAAGAAAACAATGAATGTGAGAGTGAAACTCAAAAAGAACAAGAGTGTAAAGAGAG
713 ATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAG
90446 CATACGAGAGGAGTATGAAGAAGA-AAATTTTCAAAAGGG
778 CATACGAGAGGAGTATGAAGAAGAGAAA-TTTCAAAAGGG
90485 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATC-ATCCTTTTC
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAAT-CTTTTC
* *
90549 TTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTACAAATTGATGAATAA
65 TTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCA
* * *
90614 AATTTGTATATTGAAGTTACAAATGTTGTAACATTTGATATTCCAAAACATGTGCTCTTTGACAT
130 AATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACAT
* *
90679 TCGAAGTATGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAA-GGAATGTTTCAATAAAC
195 TCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAA-GTTTCAATAAAC
* * * *
90743 CTATCCAATGAGGACCTTAAATGGACAATTTCATTTAATCATGAAATTGATTATTTACA-TTTCT
259 CTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTT-CATTTTCT
* *
90807 TTTATTTTCAATTATCTACTTCTAACTTTGCTTTA-TTTTCAGAATGATGATTCAATGAAGATTC
323 TTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTC-------A---
* * * *
90871 GATGAAGATGAAGAGTTAGGAGTTTTAGAGCAAGTACTTGCACCCTTTTTAATTGGGAGATA-AT
378 -ATGAAGATGAAGAGTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATA-
* * * * *
90935 AAGATGAAGGCTTATGTGATGTTGCTTCCACGAATTCAAGCCATCTACTTCTCGTACTTCCTTGG
441 AAGATGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGG
*
91000 -AAGTGTGATAAACGAGC-TTAGCATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGA
506 CAA-TGTGATAAACGAGCATT-GCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGA
*
91063 AGGAGATTCACGTTAGTACTAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAA
569 AGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAA
* *
91128 AAACTTTGATGCTATGCAAAATGAACATTAAGAGAAAACAAAGGAATTTGGAGTAGTTGAAAATG
634 AAACTTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATG
* *
91193 AGAATATTGAAGAGATTGAGTGTGAAGAAAAACACGAATGTGAGAGTGGAACTCAAAAAGAACAA
699 AGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAA
* **
91258 GAGTGTAAAGAGAACATACGTTAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
764 GAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
* * * * ** * * * * *
91311 ATAAGAGCATGAGCGAAAAGAATGCAAGGAGAATAAAGTTTTCTCTCAACTAATCTATCTTTTCT
1 ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
*
91376 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAACGCCATACCA
66 TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCA
91422 AAACATGTGC
Statistics
Matches: 4650, Mismatches: 275, Indels: 110
0.92 0.05 0.02
Matches are distributed among these distances:
790 2 0.00
791 422 0.09
792 2 0.00
793 2 0.00
795 1 0.00
796 56 0.01
798 1 0.00
799 5 0.00
800 247 0.05
801 2 0.00
804 3 0.00
806 187 0.04
807 141 0.03
808 4 0.00
810 2 0.00
811 4 0.00
812 696 0.15
813 238 0.05
814 513 0.11
815 340 0.07
816 1284 0.28
817 2 0.00
822 1 0.00
825 6 0.00
826 480 0.10
827 9 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (816 bp):
ACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATCTTTTCT
TCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGGCCATACCATTGCAAATTGATGAATCAA
ATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTTGACATT
CGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAATAAACCT
ATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCATGAAATTTATTATTTCATTTTCTTTG
ATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGATGATTCAATGAAGATGAAGA
GTTAGAAGTTATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAGTCTTCT
GTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCGGACGTCCTTGGCAATGTGATAAACGA
GCATTGCATGATGGGTTCTTAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAGT
ACCAATGCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATGCTATGC
AAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATT
GAGTGTGAAGAAAACCATGAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCAT
ACGAGAGGAGTATGAAGAAGAGAAATTTCAAAAGGG
Found at i:92311 original size:13 final size:12
Alignment explanation
Indices: 92293--92426 Score: 70
Period size: 13 Copynumber: 11.1 Consensus size: 12
92283 ATATAGGCGT
92293 AATATGGTGATGG
1 AATATGGTGAT-G
92306 AATATGGTGATG
1 AATATGGTGATG
*
92318 -ATATAGGCG-TG
1 AATAT-GGTGATG
92329 -ATAATGGTGATGG
1 AAT-ATGGTGAT-G
*
92342 ATTATGGTGATG
1 AATATGGTGATG
*
92354 ATATAGGCGTGAT-
1 A-ATATG-GTGATG
92367 AATA--GTGATGG
1 AATATGGTGAT-G
92378 AATATGGTGATG
1 AATATGGTGATG
*
92390 -ATATAGGCG-TG
1 AATAT-GGTGATG
92401 -ATAATGGTGATGG
1 AAT-ATGGTGAT-G
*
92414 ACTATGGTGATG
1 AATATGGTGATG
92426 A
1 A
92427 TATAGGCGTG
Statistics
Matches: 97, Mismatches: 8, Indels: 33
0.70 0.06 0.24
Matches are distributed among these distances:
9 5 0.05
11 26 0.27
12 21 0.22
13 38 0.39
14 7 0.07
ACGTcount: A:0.31, C:0.03, G:0.35, T:0.31
Consensus pattern (12 bp):
AATATGGTGATG
Found at i:92444 original size:23 final size:24
Alignment explanation
Indices: 92294--92448 Score: 87
Period size: 23 Copynumber: 6.5 Consensus size: 24
92284 TATAGGCGTA
*
92294 ATATGGTGATGGA-ATATGGTGATG
1 ATATGGTGAT-GATATAGGGTGATG
* *
92318 ATATAGGCG-TGATA-ATGGTGATGG
1 ATAT-GGTGATGATATAGGGTGAT-G
92342 ATTATGGTGATGATATAGGCGTGAT-
1 A-TATGGTGATGATATAGG-GTGATG
* *
92367 A-ATAGTGATGGA-ATATGGTGATG
1 ATATGGTGAT-GATATAGGGTGATG
* *
92390 ATATAGGCG-TGATA-ATGGTGATGG
1 ATAT-GGTGATGATATAGGGTGAT-G
92414 ACTATGGTGATGATATAGGCGTGAT-
1 A-TATGGTGATGATATAGG-GTGATG
92439 A-ATGGTGATG
1 ATATGGTGATG
92449 GACAGATTGT
Statistics
Matches: 105, Mismatches: 9, Indels: 35
0.70 0.06 0.23
Matches are distributed among these distances:
22 5 0.05
23 41 0.39
24 22 0.21
25 23 0.22
26 4 0.04
27 10 0.10
ACGTcount: A:0.30, C:0.03, G:0.35, T:0.32
Consensus pattern (24 bp):
ATATGGTGATGATATAGGGTGATG
Found at i:92451 original size:36 final size:36
Alignment explanation
Indices: 92275--92450 Score: 300
Period size: 36 Copynumber: 4.9 Consensus size: 36
92265 ATTTATATGT
* *
92275 TGGTGATAATATAGGCGTAAT-ATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
*
92310 TGGTGATGATATAGGCGTGATAATGGTGATGGATTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
*
92346 TGGTGATGATATAGGCGTGATAATAGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
*
92382 TGGTGATGATATAGGCGTGATAATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
92418 TGGTGATGATATAGGCGTGATAATGGTGATGGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGA
92451 CAGATTGTAT
Statistics
Matches: 133, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
35 19 0.14
36 114 0.86
ACGTcount: A:0.30, C:0.03, G:0.35, T:0.31
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
Found at i:95859 original size:14 final size:15
Alignment explanation
Indices: 95842--95870 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
95832 TTGCTTTTGA
95842 TTTTC-TTCTTTTTC
1 TTTTCTTTCTTTTTC
95856 TTTTCTTTCTTTTTC
1 TTTTCTTTCTTTTTC
95871 ACTCCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTCTTTCTTTTTC
Found at i:96353 original size:13 final size:11
Alignment explanation
Indices: 96333--96469 Score: 102
Period size: 13 Copynumber: 11.5 Consensus size: 11
96323 AATATAGGCG
96333 TGATATGGTGA
1 TGATATGGTGA
96344 TGGAATATGGTGA
1 T-G-ATATGGTGA
*
96357 TGATATAGGCG-
1 TGATAT-GGTGA
96368 TGATAATGGTGA
1 TGAT-ATGGTGA
96380 TGGATTATGGTGA
1 T-GA-TATGGTGA
*
96393 TGATATAGGCG-
1 TGATAT-GGTGA
96404 TGATAATGGTGA
1 TGAT-ATGGTGA
96416 TGGAATATGGTGA
1 T-G-ATATGGTGA
96429 TGATATAGGCTGA
1 TGATAT-GG-TGA
96442 T-A-ATGGTGA
1 TGATATGGTGA
96451 TGGACTATGGTGA
1 T-GA-TATGGTGA
96464 TGATAT
1 TGATAT
96470 AGGCGTGATA
Statistics
Matches: 104, Mismatches: 4, Indels: 36
0.72 0.03 0.25
Matches are distributed among these distances:
9 4 0.04
10 2 0.02
11 32 0.31
12 22 0.21
13 41 0.39
14 3 0.03
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.33
Consensus pattern (11 bp):
TGATATGGTGA
Found at i:96378 original size:23 final size:24
Alignment explanation
Indices: 96339--96469 Score: 82
Period size: 23 Copynumber: 5.5 Consensus size: 24
96329 GGCGTGATAT
96339 GGTGATGGAATATGGTGATGATATAG
1 GGTGAT-G-ATATGGTGATGATATAG
*
96365 GCGTGAT-A-ATGGTGATGGAT-TAT
1 G-GTGATGATATGGTGAT-GATATAG
* *
96388 GGTGATGATATAGGCG-TGATA-AT
1 GGTGATGATAT-GGTGATGATATAG
96411 GGTGATGGAATATGGTGATGATATAG
1 GGTGAT-G-ATATGGTGATGATATAG
*
96437 GCTGAT-A-ATGGTGATGGACTAT--
1 GGTGATGATATGGTGAT-GA-TATAG
96459 GGTGATGATAT
1 GGTGATGATAT
96470 AGGCGTGATA
Statistics
Matches: 85, Mismatches: 6, Indels: 30
0.70 0.05 0.25
Matches are distributed among these distances:
22 18 0.21
23 27 0.32
24 16 0.19
25 12 0.14
26 7 0.08
27 5 0.06
ACGTcount: A:0.29, C:0.03, G:0.36, T:0.32
Consensus pattern (24 bp):
GGTGATGATATGGTGATGATATAG
Found at i:96443 original size:71 final size:72
Alignment explanation
Indices: 96316--96490 Score: 309
Period size: 71 Copynumber: 2.5 Consensus size: 72
96306 ATTTATAAGT
*
96316 TGGTGATAATATAGGCGTGAT-ATGGTGATGGAATATGGTGATGATATAGGCGTGATAATGGTGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATATGGTGATGATATAGGCGTGATAATGGTGA
*
96380 TGGATTA
66 TGGACTA
96387 TGGTGATGATATAGGCGTGATAATGGTGATGGAATATGGTGATGATATAGGC-TGATAATGGTGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATATGGTGATGATATAGGCGTGATAATGGTGA
96451 TGGACTA
66 TGGACTA
*
96458 TGGTGATGATATAGGCGTGATAATGGTTATGGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGA
96491 CAGATTGTAT
Statistics
Matches: 100, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
71 70 0.70
72 30 0.30
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32
Consensus pattern (72 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGAATATGGTGATGATATAGGCGTGATAATGGTGA
TGGACTA
Found at i:96491 original size:36 final size:36
Alignment explanation
Indices: 96316--96490 Score: 300
Period size: 36 Copynumber: 4.9 Consensus size: 36
96306 ATTTATAAGT
*
96316 TGGTGATAATATAGGCGTGAT-ATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
*
96351 TGGTGATGATATAGGCGTGATAATGGTGATGGATTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
96387 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
*
96423 TGGTGATGATATAGGC-TGATAATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
*
96458 TGGTGATGATATAGGCGTGATAATGGTTATGGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGA
96491 CAGATTGTAT
Statistics
Matches: 133, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
35 54 0.41
36 79 0.59
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGAATA
Found at i:99221 original size:11 final size:11
Alignment explanation
Indices: 99201--99242 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
99191 TTATTTTCAT
*
99201 AATGATGATTC
1 AATGAAGATTC
99212 AATGAAGATTC
1 AATGAAGATTC
*
99223 AATTAAGATTC
1 AATGAAGATTC
*
99234 GATGAAGAT
1 AATGAAGAT
99243 GAAGAGTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (11 bp):
AATGAAGATTC
Found at i:100875 original size:11 final size:11
Alignment explanation
Indices: 100855--100896 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
100845 TTATTTTCAG
*
100855 AATGATGATTC
1 AATGAAGATTC
100866 AATGAAGATTC
1 AATGAAGATTC
100877 AATGAAGATTC
1 AATGAAGATTC
*
100888 GATGAAGAT
1 AATGAAGAT
100897 GAAGAGTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (11 bp):
AATGAAGATTC
Found at i:103000 original size:816 final size:816
Alignment explanation
Indices: 97940--105123 Score: 10184
Period size: 816 Copynumber: 8.7 Consensus size: 816
97930 GATCACATCA
*
97940 GGAACTCAAAAAGAACAAAAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
*
98005 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATTG-AGTTTTCTTTCTACTAATCAAT
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA-TGAAGTTTGCTTTCTACTAATCAAT
* * * *
98069 CTTTTCTTCCAATTCTTTCGTTTGATTTGTAGGTTATTCCAAAGACCATTCCATTGCAAATTAAT
130 CTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGACCATACCATTGCAAATTGAT
98134 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
98199 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
*
98264 TAAACCTATCCAATGAGGACCTTAAACTGATTATTTCATTCTACAAATTCATTTATTCTTGAAAT
325 TAAACCTATCCAATGAGGACCTTAAAC-G------------GACAAATTCATTTATTCTTGAAAT
98329 TGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGA
377 TGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT-TTTTTCAGAATGA
* * * *
98394 TGATTCAATGAAGATGAT-GAGTTAGAAGTCACAGAACAAATACTTGCGCCCTTTTCAATTAGGA
441 TGATTCAATGAAGATGATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGA
* *
98458 GATATAAAGATGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATTTACTTCTCGGACGT
506 GATATAAAGATGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACAT
* * * *
98523 CCTTGGCAGTGTGATAAACTAGCATTACATGATGGGTCCTTAAATCATTATTCATTCATCCATGA
571 CCTTGGCAGTGTGATAAACGAGCATTACATGATGGGTTCTTAAATCATTTTTCATTCATCCATGG
* * * * * * *
98588 GACAATGAGAATCACATTAGTA-CAATTACCATCACACAAAGTACTTCAAGATTAACAAAAACTT
636 GAGAAGGAGACTCACGTTAGTACCAATT-CCATCACACCAAGTACTTCAAGATCAACAACAACTT
* * *
98652 AAGAAAAACTTTGATGCTATGCAAAAAGAACATTGAGAAAAAATAAAAG-ATTTTGGAGTAGTTG
700 AAGAAAAACTTTGATGCTATGCAAAAAGAACATTGAGAGAAAACAAAGGCA-TTTGGAGTAGTTG
98716 AAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
764 AAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* * *
98769 GGAACTCAAAAAGAACAAGAGTTTAAAGAGAGCATACGAGAGGAGTATAAAGAAGAAAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
*
98834 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGC-TT-T-CTAATCAACC
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
*
98896 TTTTCTTCCTATTCTTTCGTTTGATTTACAGGTTATTCCAAA-AGCCATACCATTGCAAATTGAT
131 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGA-CCATACCATTGCAAATTGAT
* *
98960 GAATAAAATTTGTACATTGAAGTTACAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
*
99025 TGACATTAGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAG-AAAGGAATGTTTCA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGG-ATGTTTCA
* * * * *
99089 ATAAACTTATCCAATGAGGACCATAAATGGACAATTTCATTTATTCATGAAATTGATTATTT-AC
324 ATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCA-
** * * *
99153 TTTTCTTTTCTTTTCAATTATCTACTTCTAACTTTGCTTTATTTTCATAATGATGATTCAATGAA
388 TTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTTTTTTCAGAATGATGATTCAAT---
* *
99218 GATTCAATTAAGATTCGATGAAGATGAAGAGTTAGAAGTTATAGAGCAAGTACTTGCACCCTTTT
450 G---------A-A---GAT---GAT--AGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTT
* * * * * *
99283 TAATTGGGCGATATTAAGATGAAGTCTTGTGTGATGTTGTTTCCACGAATTCAAGCCATATACTT
497 CAATTGGGAGATATAAAGATGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTT
* * *
99348 CTCGGACTTCCTTGGAAGTGTGATAAACGAGC-TTAGCATGATGGGTTCTTAACTCATTTTTCAT
562 CTCGGACATCCTTGGCAGTGTGATAAACGAGCATTA-CATGATGGGTTCTTAAATCATTTTTCAT
* *
99412 TCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAA
626 TCATCCATGGGAGAAGGAGACTCACGTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAA
* * *
99477 CAACAACTTAAGAAAAACTTTGATGCTATACAAAATGAACATTAAGAGAAAACAAAGGCATTTGG
691 CAACAACTTAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTTGG
*
99542 AGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAA-CACGAATGTGAGAGT
756 AGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* *
99602 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAACATACGTGAGGAGTATGAAGAAGAGAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
* ** * * * *
99667 AAAGGGACATGAGCATGAGAGAAAAGAATGCAAGGAGAATAAAGTTTGCTCTCTACTAATCTATA
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
* *
99732 TTTTCTTTCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAACG-CCATAACATTGCAAATTGAT
131 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAA-GACCATACCATTGCAAATTGAT
*
99796 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCACTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
* * * *
99861 TGACATTCGATGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
* * * *
99926 TGAACCTATCCAATGGGGACCTTAAACGGACAAATTCATTCATTCATT-AAATTTATTATTTCAT
325 TAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTC-TTGAAATTGATTATTTCAT
* * *
99990 TTCCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTTTTTTTTTCAGAATGGTTATTCAATG
389 TTTCTTTGATTTTGAATTATCTACTTCTAACTTTGC---TTTTTTTTCAGAATGATGATTCAATG
*
100055 AAGATG-TAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATGAAGA
451 AAGATGATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGA
* * ** * *
100119 TGAAGTCTTTTGTGATGTTGCTTCCATGAATTCAAGCCATCTACTTCTCAAACATCCTTTGCACT
516 TGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACATCCTTGGCAGT
* * * *
100184 TTGATAAACGAGCAGTGCATGATGGGTTCTTAAATCATTTTTCATTCATCCAAGGGAGAAGGAGA
581 GTGATAAACGAGCATTACATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGAAGGAGA
* * *
100249 CTCATGTTAGTACCGATTCCATCATACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTT
646 CTCACGTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTT
* * * *
100314 TGATTCTATGCAAAATA-AGCATTGAGTA-AAGACAAAGGCATTTGGAGTAGTTAAAAATGAGAA
711 TGATGCTATGCAAAA-AGAACATTGAG-AGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAA
100377 TATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
774 TATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* *
100420 GGAACTCAAAAAGAACAAGTGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAAAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
* *
100485 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTTCTTTCTACTAATCAACC
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
*
100550 TTATCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAA-AGCCATACCATTGCAAATTGAT
131 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGA-CCATACCATTGCAAATTGAT
* *
100614 GAATAAAATTTGTACATTGAAGTTACAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
* *
100679 TGGCATTCGAAGTATGTTCATTCTACATTCAAAGTTCAAACAATCTCAAG-AAAGGAATGTTTCA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGG-ATGTTTCA
* * * *
100743 ATAAACCTATCCAATGAGGACCTTAAATGGACAATTTTATTTATTCATGAAATTGATTATTT-AC
324 ATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCA-
* * *
100807 TTTTCTTTTATTTTCAATTATCTACTTCTAACTTTGCTTTATTTTCAGAATGATGATTCAATGAA
388 TTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTTTTTTCAG-A--ATG-----AT---
* *
100872 GATTCAATGAAGATTCGATGAAGATGAAGAGTTAGAAGTTATAGAGCAAGTACTTGCACCCTTTT
442 GATTCAATG-A-A---GAT---GAT--AGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTT
* * * * * *
100937 TAATTGGGCGATATTAAGATGAAGTCTTGTGTGATGTTGTTTCCACGAATTCAAGCCATATACTT
497 CAATTGGGAGATATAAAGATGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTT
* * * *
101002 CTCGGACTTCCTTGGAAGTGTGATAAACTAGC-TTAGCATGATGGGTTCTTAACTCATTTTTCAT
562 CTCGGACATCCTTGGCAGTGTGATAAACGAGCATTA-CATGATGGGTTCTTAAATCATTTTTCAT
* * *
101066 TCATCCATGGGAGAAGGAGATTCATGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAA
626 TCATCCATGGGAGAAGGAGACTCACGTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAA
* * *
101131 CAACAACTTAAGAAAAACTTTGATGCTATCCAAAATGAACATTAAGAGAAAACAAAGGCATTTGG
691 CAACAACTTAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTTGG
* * *
101196 AGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAAACACGAATATGAGAGT
756 AGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* *
101257 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAACATACGTGAGGAGTATGAAGAAGAGAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
* * * * ** * * * * *
101322 AAAGAGACACGAGCATGAGACAAAAGAATGCAAGGAGAATAAAGTTTGCTCTATACTAATCTATA
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
* * *
101387 TTTTCTTCCTATTCTTT-TTTTGAATTGCAGGTTATTCCAAACG-CCATAACATTGCAAATTGAT
131 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAA-GACCATACCATTGCAAATTGAT
* *
101450 GAATCAAATTTTTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCACTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
* * * * *
101515 TGACATTCGATGTACGTTCATTCTACATTCAAAGTTCAAATAATCTAAAGAAAGGGAAGTTTCAA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
* * * * *
101580 TGAACCTATCCAATGAGGACCTTAAACAGACAAATTCATTCATTCATT-AAATTTAATATTTCAT
325 TAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTC-TTGAAATTGATTATTTCAT
* * *
101644 TTCCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGGTTATTCAATGAA
389 TTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT-TTTTTCAGAATGATGATTCAATGAA
* * *
101709 GATG-TAGAGTTAAAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGATATATGAAGATG
453 GATGATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATG
* * * * * * * * *
101773 AATTCTTTTGTG-TGTTGCTTCCAGGAATTCAAGCCATCTACTTCTCGAACGTCCTTTGCACTTT
518 AAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACATCCTTGGCAGTGT
* * *
101837 GATAAACGAGCATTGCATGATGGGTTCTTAAATCATTTTTCATTCATCCAAGGTAGAAGGAGACT
583 GATAAACGAGCATTACATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGAAGGAGACT
* * *
101902 CATGTTAGTACCGATTCCATCACACCAAGTACTTCAAGATCAACAACTACTTAAGAAAAACTTTG
648 CACGTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTG
* * * *
101967 ATGCTATGCAAAATA-AACATTGAGTGAAGACAAAGGCATTTGGATTAGTTAAAAATGAGAATAT
713 ATGCTATGCAAAA-AGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATAT
102031 TGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
777 TGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* *
102071 GGAACTCAAAAAGAACAAGAGTGTAATGAGAGCATACGAGAGGAGTATGAAAAAGAGAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
102136 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATTG-AGTTTGCTTTCTACTAATCAAT
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA-TGAAGTTTGCTTTCTACTAATCAAT
* * *
102200 CTTTTCTTCCTATTCTTTCATTTGATTTGTAGGTTATTCCAAAGACCATTCCATTGCAAATTGAT
130 CTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGACCATACCATTGCAAATTGAT
102265 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
*
102330 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTCCAAACAATCTCAAGAAAAGGATGTTTCAA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
* ** ** *
102395 TAAACATATAAAATGAGGACCTTAAACAAACAAATTCATTTATTCTTGAAATTGATTGTTTCATT
325 TAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCATT
102460 TTCTTTGATTTT-ATATTATCTACTTCTAACTTTGCTTTGTTTTTCAGAATGATGATTCAATGAA
390 TTCTTTGATTTTGA-ATTATCTACTTCTAACTTTGCTTT-TTTTTCAGAATGATGATTCAATGAA
* *
102524 TATGAT-GAGTTAGAAGTCATAGAGCATGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATG
453 GATGATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATG
* *
102588 AAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATTTACTTCTTGGACATCCTTGGCAGTGT
518 AAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACATCCTTGGCAGTGT
* * * * * * * *
102653 GATAAACTAGCATTACATGGTGGGTCCTTAAATCATTATTCATTCATCCATGAGACAATGAGAAT
583 GATAAACGAGCATTACATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGAAGGAGACT
* * *
102718 CACATTAGTA-CAATTACCATCACACAAAGTACTTCAAGATTAACAACAACTTAAGAAAAACTTT
648 CACGTTAGTACCAATT-CCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTT
* * *
102782 GATGCTATGCAAAAAGAACATTGAGAAAAAATAAAAG-ATTTTGGAGTAGTTGAAAATGAGAATA
712 GATGCTATGCAAAAAGAACATTGAGAGAAAACAAAGGCA-TTTGGAGTAGTTGAAAATGAGAATA
102846 TTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
776 TTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* * * * *
102887 GAAACTAAAAAAGAACAAGAGTTTAAAGAGAGCATACGAGAGGAGTATAAAGAAGAAAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
*
102952 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAACC
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
* *
103017 TTTTCTTCCTATTCTTTCGCTTGATTTACAGGTTATTCCAAA-AGCCATACCATTGCAAATTGAT
131 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGA-CCATACCATTGCAAATTGAT
* *
103081 GAATAAAATTTGTACATTGAAGTTACAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
*
103146 TGACATTCGAAGTATGTTCATTCTACATTCAAAGTTCAAACAATCTCAAG-AAAGGAATGTTTCA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGG-ATGTTTCA
* * * *
103210 ATAAACCTATCCAATGAGGACCATAAATGGACAATTTCATTTATTCATGAAATTGATTATTT-AC
324 ATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCA-
* * * *
103274 TTTTCTTTTATTTTCAATTATCTACTTCTAACTTTGCTTTATTTTCATAATGATGATTCAATGAA
388 TTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTTTTTTCAGAATGATGATTCAATG--
* *
103339 TATTCAATTAAGATTCGATGAAGATGAAGAGTTAGAAGTTATAGAGCAAGTACTTGCACCCTTTT
451 ----------A-A---GAT---GAT--AGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTT
* * * * * *
103404 TAATTGGGCGATATTAAGATGAAGTCTTGTGTGATGTTGTTTCCACGAATTCAAGCCATATACTT
497 CAATTGGGAGATATAAAGATGAAGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTT
* * *
103469 CTCGGACTTCCTTGGAAGTGTGATAAACGAGC-TTAGCATGATGGGTTCTTAACTCATTTTTCAT
562 CTCGGACATCCTTGGCAGTGTGATAAACGAGCATTA-CATGATGGGTTCTTAAATCATTTTTCAT
* *
103533 TCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATCAA
626 TCATCCATGGGAGAAGGAGACTCACGTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAA
* * * *
103598 CAACAACTTAAGAAAAACTTTGATGCTATACAAAATGAACATTAAGAGAAAACAAAGGCATTTGA
691 CAACAACTTAAGAAAAACTTTGATGCTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTTGG
* *
103663 AATAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAA-CACGAATGTGAGAGT
756 AGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* *
103723 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAACATACGTGAGGAGTATGAAGAAGAGAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
* * ** * * * *
103788 AAAGCGACATGAGCATGAGAGAAAAGAATGCAAGGAGAATAAAGTTTGCTCTCTACTAATCTATA
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
*
103853 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAACG-CCATAACATTGCAAATTGAT
131 TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAA-GACCATACCATTGCAAATTGAT
* *
103917 GAATCAAATTTGTACATTGAAGTTCCAAATGATGTAACATTTGGTATTCCAAAACATGTGCACTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
* * * *
103982 TGACATTCGATGTACGTTCATTCTACATTCAAAGTTCAAACAATCTAAAGAAAGGGAAGTTTCAA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
* * * * *
104047 TGAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTCATTCATCAAATTTATTATTTCATT
325 TAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCATT
* * *
104112 TCCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTATTTTTCAGAATGGTTATTCAATGAAG
390 TTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT-TTTTTCAGAATGATGATTCAATGAAG
* *
104177 ATG-TAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTTAATTGGGAGATATGAAGATGA
454 ATGATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGA
* * * ** * * *
104241 AGTCTTTTGTGATGTTGCTTCCAGGAATTCAAGCCATCTACTTCTAAGACATCCTTTGCACTTTG
519 AGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACATCCTTGGCAGTGTG
* ** * *
104306 ATAAACGAGCAGTGGATTATGGGTTCTTAAATCATTTTTCATTCATCCAAGGGAGAAGGAGACTC
584 ATAAACGAGCATTACATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGAAGGAGACTC
* *
104371 ATGTTAGTACCGATTCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGA
649 ACGTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGA
*
104436 TGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTG
714 TGCTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTG
*
104501 AAGAGATTGAGTGTGAAGAAAACCAAGAATGTGAGAGT
779 AAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* * * *
104539 AGAAGTCAAAAAGAACAAGAGTGTAAAGAAAGCATAGGAGAGGAGTATGAAGAAGAGAAATTTCA
1 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
* *
104604 AAAGGGACATGAGCTTAAGAGAAAATAATGGGAGGAGAATTG-AGTTTGCTTTCTACTAATCAAT
66 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA-TGAAGTTTGCTTTCTACTAATCAAT
* *
104668 CTTTTCTTCCTATTCTTTCGTTTGATTTGTAGGTTATTCCAAAGACCATTCCATTGCAAATTGAT
130 CTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGACCATACCATTGCAAATTGAT
104733 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
195 GAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTT
*
104798 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAAGATGTTTCAA
260 TGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAA
**
104863 TAAACCTATCCAATGAGGACCTTAAACAAACAAATTCATTTATTCTTGAAATTGATTATTTCATT
325 TAAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCATT
*
104928 TTCTTTTATTTTGAATTATCTACTTCTAACTTTGCTTTGTTTTTCAGAATGATGATTCAATGAAG
390 TTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT-TTTTTCAGAATGATGATTCAATGAAG
* *
104993 ATGA-AGAGTTAGAAGTCATAGAACAAGTGCTTGCGCCCTTTTCAATTGGGAGATATAAAGATGA
454 ATGATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGA
* *
105057 AGTCTTCTGTTATGTTGCTTCCATGAATTCAAGCCATTTACTTCTCGGACATCCTTGGCAGTGTG
519 AGTCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACATCCTTGGCAGTGTG
105122 AT
584 AT
105124 GTGATCCTGT
Statistics
Matches: 5662, Mismatches: 561, Indels: 277
0.87 0.09 0.04
Matches are distributed among these distances:
812 21 0.00
813 67 0.01
814 388 0.07
815 763 0.13
816 1175 0.21
817 315 0.06
818 398 0.07
819 1 0.00
820 1 0.00
821 6 0.00
823 4 0.00
824 3 0.00
825 10 0.00
826 228 0.04
827 4 0.00
828 9 0.00
829 107 0.02
831 8 0.00
833 122 0.02
834 304 0.05
835 7 0.00
836 909 0.16
837 786 0.14
838 5 0.00
839 21 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (816 bp):
GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAATGAAGTTTGCTTTCTACTAATCAATC
TTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCCAAAGACCATACCATTGCAAATTGATG
AATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACATTTGGTATTCCAAAACATGTGCTCTTT
GACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAACAATCTCAAGAAAAGGATGTTTCAAT
AAACCTATCCAATGAGGACCTTAAACGGACAAATTCATTTATTCTTGAAATTGATTATTTCATTT
TCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTTTTTTCAGAATGATGATTCAATGAAGAT
GATAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCTTTTCAATTGGGAGATATAAAGATGAAG
TCTTCTGTGATGTTGCTTCCATGAATTCAAGCCATATACTTCTCGGACATCCTTGGCAGTGTGAT
AAACGAGCATTACATGATGGGTTCTTAAATCATTTTTCATTCATCCATGGGAGAAGGAGACTCAC
GTTAGTACCAATTCCATCACACCAAGTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATG
CTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAA
GAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
Found at i:107779 original size:13 final size:11
Alignment explanation
Indices: 107738--107822 Score: 66
Period size: 11 Copynumber: 7.2 Consensus size: 11
107728 ACAATCTGTC
107738 CATCACCATTAT
1 CATCACCA-TAT
*
107750 CA-CGCCTATAT
1 CATCACC-ATAT
107761 CATCACCATAGT
1 CATCACCATA-T
107773 CCATCACCATTAT
1 -CATCACCA-TAT
*
107786 CA-CGCCTATAT
1 CATCACC-ATAT
107797 CATCACCATATT
1 CATCACCATA-T
107809 CCATCACCATAT
1 -CATCACCATAT
107821 CA
1 CA
107823 CGCCTATATT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.40
12 15 0.25
13 19 0.32
14 2 0.03
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.28
Consensus pattern (11 bp):
CATCACCATAT
Found at i:107782 original size:36 final size:36
Alignment explanation
Indices: 107735--107839 Score: 185
Period size: 36 Copynumber: 2.9 Consensus size: 36
107725 GATACAATCT
107735 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
107771 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
* *
107807 TTCCATCACCA-TATCACGCCTATATTATCACCA
1 GTCCATCACCATTATCACGCCTATATCATCACCA
107840 ACTTATAAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
35 21 0.31
36 46 0.69
ACGTcount: A:0.30, C:0.36, G:0.05, T:0.29
Consensus pattern (36 bp):
GTCCATCACCATTATCACGCCTATATCATCACCATA
Found at i:108983 original size:19 final size:21
Alignment explanation
Indices: 108959--109010 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
108949 CGTCCAAGAG
*
108959 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
108978 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
108999 CATGTATTTTCA
1 CATGTATTTTCA
109011 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:110311 original size:11 final size:11
Alignment explanation
Indices: 110291--110332 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
110281 TTATTTTCAG
*
110291 AATGATGATTC
1 AATGAAGATTC
110302 AATGAAGATTC
1 AATGAAGATTC
110313 AATGAAGATTC
1 AATGAAGATTC
*
110324 GATGAAGAT
1 AATGAAGAT
110333 GAAGAGTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (11 bp):
AATGAAGATTC
Found at i:111901 original size:11 final size:11
Alignment explanation
Indices: 111881--111922 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
111871 TTGTTTTCAG
*
111881 AATGATGATTC
1 AATGAAGATTC
111892 AATGAAGATTC
1 AATGAAGATTC
111903 AATGAAGATTC
1 AATGAAGATTC
*
111914 GATGAAGAT
1 AATGAAGAT
111923 GAAGAGTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (11 bp):
AATGAAGATTC
Found at i:133724 original size:815 final size:817
Alignment explanation
Indices: 131870--135494 Score: 5639
Period size: 816 Copynumber: 4.4 Consensus size: 817
131860 AGAACAAGAG
*
131870 TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCTTATTCTTTCGTTTGATTTGCAGGTTATTCC
1 TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCC
131935 AAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACAT
66 AAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACAT
*
132000 TTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTTAAA
131 TTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAA
* * * *
132065 CAATCTAAAGAAAGGGAA-GTTCCAATGAACCTATCCAATGAGGACCTTAAACGAACAAATTCAT
196 CAATCTCAAGAAAGGGAATGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCAT
* * *
132129 TCAATCATGAAATTTATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTA
261 TTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTA
* * *
132194 TTTTTCAGAATGATGATTCAATGAAGATGAAGAATTAGAAGTCATAGAGCAAGTATTTACGCCCT
326 TTTTTCAGAATGATGATTCAATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCT
* * *
132259 TTTCAATTGGGAGATATGAAGATGAAGTCTTGTTTGATGTTACTTCCATGAATTCAAGCCATATA
391 TTTCAATTGGGAGATATGAAGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTA
* * *
132324 CTTCTCGGACGTCCTTGGCACTGTGATAAACGAGCATTGCATGATGGGTTTTTAAATCATTATCC
456 CTTCTCGGACGTCCTTGGCACTGTGATAAACGAGCATTACATGATGGGTTCTTAAATCATTATTC
*
132389 AATCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATC
521 ATTCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATC
* * *
132454 AACAACAACATAAGAAAAACTTTGATGCTATGCAAAATGAACATTGAGAGAAAA-AAAGGCATTT
586 AACAACAACTTAAGAAAAACTTTGATACTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTT
*
132518 GGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGC
651 GGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGG
* * *
132583 AACTTAAAAAGAACAAGAGTGTAATGAGAGCATATGAGAGGAGTATGAAGAAGAGAAATTTCAAA
716 AACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAA
132648 AGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
781 AGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
* *
132685 TTG-AGTTTGCTTTCTACTAATCAATCTTTTATTCCTATTCTTTCGTTTGATTTGTAGGTTATTC
1 -TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTC
* * *
132749 CAAAGACCATTCCATTGCAAATTGATGAATCAAATTTGTACTTTGAAGTTCCAAATGTTGTAACA
65 CAAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACA
*
132814 TTTGGTATTCCAAAACATGTGCTCTTTAACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAA
130 TTTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAA
* * * ***
132879 ACTATCTCAAGAAAAGG-ATGTTTTAATAAACCTATCCAATGAGGACCTTAAAAAAACAAATTCA
195 ACAATCTCAAGAAAGGGAATGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCA
* *
132943 TTTTTTCTTGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT
260 TTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT
* *
133008 ATTTTTCAGAATGATGATTCAATGAAGATGAAGAGTTAGAAGTCATAGAACAAGTACTTGTGCCC
325 ATTTTTCAGAATGATGATTCAATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCC
* * * *
133073 TTTTCAATTGGGAGATATAAAGATGAAGTCTTATGTGATGTTGCTTCCATGAATTTAAGCCATTT
390 TTTTCAATTGGGAGATATGAAGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCT
* * * *
133138 ACTTCTCGGACGTCCTTGGCAGTGTGATAAACTAGCATTACATGATGAGTCCTTAAATCATTATT
455 ACTTCTCGGACGTCCTTGGCACTGTGATAAACGAGCATTACATGATGGGTTCTTAAATCATTATT
* * * * * * *
133203 CATTCATCCATGAGAGAATGAGAATCACATTAGTA-CAATTGCCATCAGACAAAATACTTCAAGA
520 CATTCATCCATGGGAGAAGGAGATTCACGTTAGTACCAA-TGCCATCACACCAAGTACTTCAAGA
* * * *
133267 TTAACAACAACTTAAGAAAAACTTTGATACTATGCAAAAAGAACATTGAGAGAAAATAAAAGCTT
584 TCAACAACAACTTAAGAAAAACTTTGATACTATGCAAAAAGAACATTGAGAGAAAACAAAGGCAT
* *
133332 TTGGAGTAGTTGAAAATGAGAATATTGAAGAGACTGAGTGTGAATAAAACCATGAATGTGAGAGT
649 TTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* * *
133397 AGAACTCAAAAAGAGCAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAATA-AATATTTC
714 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAA-ATTTC
133461 AAAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
778 AAAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
* * * *
133501 TGAAGTTTGCTTTCGACTAATCAACCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGATTGTTCC
1 TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCC
* * *
133566 AAAGGCCATACCATTGCAAATTGATGAATAAAATTTGTACATTGAAATTACAAATGTTGTAACAT
66 AAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACAT
133631 TTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAA
131 TTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAA
* *
133696 CAATCTCAAGAAA-GGAATG-TTCAATAAACCTATCCAATGAGGACCTTAAATGGACAATTTCAT
196 CAATCTCAAGAAAGGGAATGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCAT
* *
133759 TTATTCATGAAATTGATTATTT-ACTTTTCTTTTATTTTCAATTATCTACTTCTAACTTTGCTTT
261 TTATTCATGAAATTGATTATTTCA-TTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT
*
133823 A-TTTTCAGAATGATGATTCAATGAAAATTCGATGAAGATGAAGAGTTAGAAGTTATAGAGCAAG
325 ATTTTTCAGAATGATGATTC-------A----ATGAAGATGAAGAGTTAGAAGTCATAGAGCAAG
* * ** * * *
133887 TACTT-CACCCTTTTTAAGAGGGAGATATTAAGGTGATGTCTTGTGTGATGTTGCTTCCATGAAT
379 TACTTGCGCCCTTTTCAATTGGGAGATATGAAGATGAAGTCTTGTGTGATGTTGCTTCCATGAAT
* * *
133951 TCAAGCCATCTACTTCTCGGACTTCCTTGGAAGTGTGATAAACGAGC-TTAGCATGATGGGTTCT
444 TCAAGCCATCTACTTCTCGGACGTCCTTGGCACTGTGATAAACGAGCATTA-CATGATGGGTTCT
*
134015 TAAATCATTTTTCATTCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAA
508 TAAATCATTATTCATTCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAA
* *
134080 GTACTTCAAGATCAACAACAACTTACGAAAAACTTTGATACTATGCAAAATA-AACATTAAGAGA
573 GTACTTCAAGATCAACAACAACTTAAGAAAAACTTTGATACTATGCAAAA-AGAACATTGAGAGA
* *
134144 AAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAAACAC
637 AAACAAAGGCATTTGGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCAT
* *
134209 GAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAACATACGTGAGGAGTATGAAGA
702 GAATGTGAGAGTGGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGA
* **
134274 AGAGAAATTTCAAAAGGGACATGAGCATGAGAGAAAAGAATGCAAGGAGAA
767 AGAGAAATTTCAAAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
* * * *
134325 TAAAGTTTGCTCTCTACTAATCTATCTTTTCTTCCTATTCTTTCGTTTGATTTGTAGGTTATTCC
1 TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCC
*
134390 AAACGCCATACCATTG-ATAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACA
66 AAAGGCCATACCATTGCA-AATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACA
* * * *
134454 TTTGGTATTCCAAAACATGTGCACTTTGACATTCTATGTACGTTCATTCTACATTCAAAATTCAA
130 TTTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAA
* *
134519 ACAATCTAAAGAAAGGGAA-GTTTCAATGAACCTATCCAATGAGGACCTTAAACGGACAAATTCA
195 ACAATCTCAAGAAAGGGAATGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCA
* * * *
134583 TTCAGTCATGAAATTTATTATTTCATTTCCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT
260 TTTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTT
* * *
134648 ATTTTTCAGAATGATGATTCAATGTAGATGTAGAGTTAGAAGTCACAGAGCAAGTACTTGCGCCC
325 ATTTTTCAGAATGATGATTCAATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCC
*
134713 TTTTCAATTGGGAGATATGAAGATGAAGTCTTGTGTGATATTGCTTCCATGAATTCAAGCCATCT
390 TTTTCAATTGGGAGATATGAAGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCT
* * * * *
134778 ACTTCTCGAACGTCCTTTGCACTGTGATAAACGAGCATTGCATGATGGATTTTTAAATCATTATT
455 ACTTCTCGGACGTCCTTGGCACTGTGATAAACGAGCATTACATGATGGGTTCTTAAATCATTATT
*
134843 CATTCATCCATGGGAGAAGGAGATTCGCGTTAGTACCAATGCCATCACACCAAGTACTTCAAGAT
520 CATTCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGAT
* * *
134908 CAACAACAACTTAAGAAAAACCTTGATGCTATGCAAAATGAACATTGAGAGAAAACAAAGGCATT
585 CAACAACAACTTAAGAAAAACTTTGATACTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATT
* * *
134973 TGGAGTAGTTGAAAAT-ACGAATATTTAAGAGATTGAGTGTGAATAAAACCATGAATTTGAGAGT
650 TGGAGTAGTTGAAAATGA-GAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGT
* *
135037 GGAACTCAAAAAGAACAAGAGTGTATAGAGAGCATACGAGAGGAGTATGAAGAACAGAAATTTCA
714 GGAACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCA
*
135102 AAAGGGACATGAGCATGAGAGAAAGTAATGGGAGGAGAA
779 AAAGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
* *
135141 TGAAGTTTGCTTTCTACTAATAAATATTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCC
1 TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCC
* *
135206 AAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGGAGTTCCAAATGTTGGAACAT
66 AAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACAT
* * *
135271 TTAGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACATTCATTCTACATTAAAAGTTCAAA
131 TTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAA
* * * *
135336 CAATCTCAAGAAATGG-ATGTTTCAATAAACCTATCCAATGAGGACCTTAAATGGATAATTTCAT
196 CAATCTCAAGAAAGGGAATGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCAT
* * *
135400 TTATTCATGAAATTGATCATTTCGTTTTCTTTGATTTTCAATTATCTACTTCTAACTTTGCTTTA
261 TTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTA
135465 -TTTTCAGAATGATGATTCAATGAAGATGAA
326 TTTTTCAGAATGATGATTCAATGAAGATGAA
135495 ATGAAGATGA
Statistics
Matches: 2550, Mismatches: 226, Indels: 67
0.90 0.08 0.02
Matches are distributed among these distances:
814 23 0.01
815 746 0.29
816 1041 0.41
817 3 0.00
819 1 0.00
821 1 0.00
823 4 0.00
824 568 0.22
825 144 0.06
826 19 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (817 bp):
TGAAGTTTGCTTTCTACTAATCAATCTTTTCTTCCTATTCTTTCGTTTGATTTGCAGGTTATTCC
AAAGGCCATACCATTGCAAATTGATGAATCAAATTTGTACATTGAAGTTCCAAATGTTGTAACAT
TTGGTATTCCAAAACATGTGCTCTTTGACATTCGAAGTACGTTCATTCTACATTCAAAGTTCAAA
CAATCTCAAGAAAGGGAATGTTTCAATAAACCTATCCAATGAGGACCTTAAACGGACAAATTCAT
TTATTCATGAAATTGATTATTTCATTTTCTTTGATTTTGAATTATCTACTTCTAACTTTGCTTTA
TTTTTCAGAATGATGATTCAATGAAGATGAAGAGTTAGAAGTCATAGAGCAAGTACTTGCGCCCT
TTTCAATTGGGAGATATGAAGATGAAGTCTTGTGTGATGTTGCTTCCATGAATTCAAGCCATCTA
CTTCTCGGACGTCCTTGGCACTGTGATAAACGAGCATTACATGATGGGTTCTTAAATCATTATTC
ATTCATCCATGGGAGAAGGAGATTCACGTTAGTACCAATGCCATCACACCAAGTACTTCAAGATC
AACAACAACTTAAGAAAAACTTTGATACTATGCAAAAAGAACATTGAGAGAAAACAAAGGCATTT
GGAGTAGTTGAAAATGAGAATATTGAAGAGATTGAGTGTGAAGAAAACCATGAATGTGAGAGTGG
AACTCAAAAAGAACAAGAGTGTAAAGAGAGCATACGAGAGGAGTATGAAGAAGAGAAATTTCAAA
AGGGACATGAGCATGAGAGAAAATAATGGGAGGAGAA
Found at i:135497 original size:11 final size:11
Alignment explanation
Indices: 135483--135527 Score: 90
Period size: 11 Copynumber: 4.1 Consensus size: 11
135473 ATGATGATTC
135483 AATGAAGATGA
1 AATGAAGATGA
135494 AATGAAGATGA
1 AATGAAGATGA
135505 AATGAAGATGA
1 AATGAAGATGA
135516 AATGAAGATGA
1 AATGAAGATGA
135527 A
1 A
135528 GAGTTAGATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.18
Consensus pattern (11 bp):
AATGAAGATGA
Found at i:135504 original size:6 final size:6
Alignment explanation
Indices: 135484--135529 Score: 71
Period size: 6 Copynumber: 8.2 Consensus size: 6
135474 TGATGATTCA
135484 ATGAAG ATGAA- ATGAAG ATGAA- ATGAAG ATGAA- ATGAAG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
135529 A
1 A
135530 GTTAGATGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 15 0.41
6 22 0.59
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.17
Consensus pattern (6 bp):
ATGAAG
Found at i:138377 original size:6 final size:6
Alignment explanation
Indices: 138338--138379 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
138328 CAAAGGCAAC
*
138338 AAAAAG AAAAA- AAAGAAG AAAAAC AAAAAG -AAAAG AAAAAG A
1 AAAAAG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG A
138380 CTCCTACATC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 8 0.26
6 20 0.65
7 3 0.10
ACGTcount: A:0.83, C:0.02, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:142936 original size:13 final size:13
Alignment explanation
Indices: 142918--142943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
142908 TGGCCAAAGA
142918 TGAAAAGGTATGT
1 TGAAAAGGTATGT
142931 TGAAAAGGTATGT
1 TGAAAAGGTATGT
142944 GAGATGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:148645 original size:689 final size:688
Alignment explanation
Indices: 145640--162897 Score: 18895
Period size: 677 Copynumber: 24.9 Consensus size: 688
145630 CCTTACATCA
* *
145640 ATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* * *
145705 CATTTAATTGAATTAAATTGCGTTTAGGAGATTATTTTATTTTAATTGTAAAAACTCTTCATATG
66 CATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATG
* * * * *
145770 GTGTCTATCAACACTATAAATAGGCACCACCGTGGCATTTGTACTAAGAAATTTTTGTATAATAA
131 GTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAA
* * * * * *
145835 ACTCTCTGAATGATTGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGATTTCTTGTTGGTCT
196 ACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTCT
** * * * *
145900 TGAATTCATCATCCATTTCATCTTGTTATAGCTTTCGTTCCTAGCTCTACTATAGCTAGTGGGTC
261 TGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTT
* * *
145965 ACATTTCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAG
326 ACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAG
* * ** ** * *
146030 TTAGAGGGTCAGAATCCATCCTTTGAATTGCTATCATTGACCATGCTAACCACAAACATCCTTAA
391 TTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCCACACCAACCACAAACATCCTTCA
* * * *
146095 CCATTTTCCTTACATCCAATCAACCACTATTATCACTACACATCTTTCATTTACAATCCACTTCA
455 CCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCA
*
146160 ACTTCATTCTATCATTTCCATTACTTACATACACATATTTAAATATACATATTTCCCTTCTTATA
520 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATA
* *
146225 ACGTTGTTTGTACATTTTTAGTCTTAAATCAAAGCACTACGAAGTTCTTAATAGAATCAAGATCG
585 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCG
*
146290 GGCAATCATATATATGATCTAAAACTCATAATCGAGATC
650 GGCAATCATATATATGATCTGAAACTCATAATCGAGATC
*
146329 ATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* * *
146394 CATTTAATTGAATTAAATTGCATTAAGGTTATTGCTTTATTTTAATTGTAAAAACTCTTCATATG
66 CATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATG
146459 GTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAA
131 GTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAA
*
146524 ACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCAATTGGTTTCTTGTAGGTCT
196 ACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC-
* *
146589 TGTGAAGTCTTCATCCATTTCATCTTGTTATAGCGTTGGGTCCTAGCTCTACTATAGCTAGTGGG
260 T-TGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * *
146654 TCACGTTCCACCCTCCATCACTTCGATTCCATCTTTAGTTTATTGTTGGTTTCTAACTCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * * * * ** *
146719 AGTTAGAGGGTCATAATCCATTCTTTAAATTACCATCATTGTCCACGTCAACCATAAACATCCTT
389 AGTTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCCACACCAACCACAAACATCCTT
* *
146784 CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAATT
453 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
* *
146849 GAACTTCATTCTATCATTTCCATTACCTACATACGCATATTTAAATATACATATTTCCCTTCTTA
518 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
* * * *
146914 TAATGTTGTTTGTACATTTTCACTCTTAAATCAAAGCGCTACGAAGTTCTTAATAGAATCAAGAT
583 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGAT
* * *
146979 CGGGTAATCATATATACGATCTGAAATTCATAATCGAGATC
648 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * * * *
147020 ATATCATTATTAATCCATTTTCAATCTACATGGGCAACTATAAAAAGGTTAGAAGAATGCCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
*
147085 CATTTATTTGAATTAAATAT-CATTTAGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
*
147148 TTGTGCCTATCAACACTATAAATAGGCACCTCCATGGCA-TTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
* *
147212 AAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * * ** * *
147277 CTTGAAGGCTTCGTCTATTTCATCTTGTTATAGTTTTGATTCCTAACTCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
147342 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTATTGGTTCCTAACTCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* ** * *
147407 ACTTAGACAGTCACAATCCATCCTTTGAATTACAATCATTCTCCACGCCAACCACAAACATCCTT
389 AGTTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCCACACCAACCACAAACATCCTT
*
147472 CACCATTTTCGTTACATCCAATCAACCACTATCATCATCACACTTCTTTCATTTACAATCCACTT
453 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
* * * * *
147537 -AACCTTTATTCTACCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTT
518 CAA-CTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTT
** *
147601 ATAGTGTTGTTTGTACATTTTCAGTC-TACAATCAAAGCACT-----G------CGAGAATCAAG
582 ATAACGTTGTTTGTACATTTTCAGTCTTA-AATCAAAGCACTACGAAGTTCTTACTAGAATCAAG
** * * * *
147654 ATC-TACAAATCATATCTATGATCCGAAACTCATAACCGATATC
646 ATCGGGC-AATCATATATATGATCTGAAACTCATAATCGAGATC
* * * * * * *
147697 ATATCAGTAGTCAACCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* *
147762 CATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTTG
66 CATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATG
* * * * *
147827 GTGCCTATCAACACAATAAATAGGCACCTCCACGACATTTGTAATAAGAACTTTTTTCATAATAA
131 GTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAA
* * * *
147892 ACTCTTTG-ATAGATTGCTTTAATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTATAGGTC
196 ACTCTTTGAAT-TATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * ** * *
147956 TTGAAGCCTTCATCCATTTCATCTAGATATAACATTACTTCTTAGCTCTACTATAGCTAGTGGGC
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
* * *
148021 CACGTTTCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
325 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATA
* * * * * *
148086 GTTAGAGGGTCACAATCCATACTTTAAATTACTATCATTGTCCACGCCAACCATAATCATCCTTC
390 GTTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCCACACCAACCACAAACATCCTTC
* *
148151 ACCATTTTTGTTACATCCAATCAACCACTATCATCACCCCACTTCTTTCATTTACAATCCACTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
148216 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* * * **
148281 AACATTGTTTGTACATTTTCAATCTAAAATCAAAGCACTACGACTTTCTTACTAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
* *
148346 GGGCAATCATATATATGATCCGAAACTCATAATCGATATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
148386 ATATCATTATTCATCCATTTTCAATCTACAT-GGACAACCATCAAAAGGTTAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGA-AACCATCAAAAGGTTAGAAGAATGACAAG
* * *
148450 TCATTTAAGTGAATTAAGTTGCATTTAGGTGATTGTTTTATTTTAATTGTATAAACTCTTCATAT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * *
148515 GGTTCCTGTCAACACTATAAATAGGCACCTCCATGGCATTTGTTCTAAGAACGTTTTGCATAATA
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATA
148580 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
195 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * *
148645 TTGAAGTCATCATCCATTTCATCTTGTTATAGTGTTGGTTCCTACCTCTTCTATAGCTAGTGGGT
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
* * *
148710 CACGTTCCACCCT-TCATCACTTCGATTCCATCTTTAGTTTATTGTTGGTTTCTAACTCATATAT
325 TACGTTCCACCCTCT-ATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * * * * *
148774 AGTTAGAGGGTCACAATCCGTTCTTTAAATTACCATCATTGTCCACATCAACCACAAACATCCTT
389 AGTTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCCACACCAACCACAAACATCCTT
* **
148839 CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAAAT
453 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
* *
148904 GAACTTTATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
518 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
* * *
148969 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTACGAAGTTCTTAATAGAATTAAGAT
583 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGAT
* * *
149034 CGGGCAATCATATATTTGATCTGAAATTCGTAATCGAGATC
648 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
*
149075 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* *
149140 CATTTATTTGAATTAAATAT-CATTTTGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
*
149203 TGGTGCCTATCAACACTATAAATAGGCACCTCCTTGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
*
149268 AAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
149333 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
149398 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACACATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
149463 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
*
149528 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAGTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * *
149593 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* *
149658 AACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
** *
149712 GGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * * **
149752 ATATCATTTTTCAACCATTTTCAATCTACATGGGAAACCAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * *
149816 TAATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
149881 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAAGAACTTTTTTCATAATA
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATA
** * * * * * *
149946 AACTCTTTGAAAAATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGATC
195 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * * *
150011 TTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCTCTACTATAGCTTGTGGGA
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
* *
150076 TACGTTCGACCCTCTATCACTTCGATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATATA
325 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATA
* ** *
150141 GTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCCTTCA
390 GTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTCA
* * * *
150206 CCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTTCA
455 CCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCA
150271 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATA
520 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATA
** * ***** *
150336 ACGTTGTTTGTACA-CAT-A-T-TTAAAT-ATA-CA-TATTTCCCTTCTTA-TAG--T-TAGA--
585 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTA-CGAAGTTCTTACTAGAATCAAGATC
** * * ** * * *
150388 GGGTC-A-CA-ATCCATCATTTGAATACTATCATTCTCCACACC
649 GGG-CAATCATATATATGATCTGAA-AC--TCATAATCGAGATC
* * ** * *** *
150429 AGCCGCAAACATCCTTCA-CCATTTTC-GT-TACATCCAATCAACCACTATCATCATCACA-CTT
1 A-----TATCATTATTCATCCATTTTCAATCTACATGGGA--AA-C-C-ATCA--A--A-AGGTT
***** * * * * * * * ** * *****
150490 CTTTCATTTACAA-TCCACTTAACCTTTATTCTACCATTTTCA-TTACTTTCATACACATA-TTT
51 AGAAGAATGACAAGT-CATTTAA--TTGAAT-TA--AATTGCATTTA-GGTGATTGTTTTATTTT
* * ** * * ** * * * * * *
150552 AAATATACATATTTCCCTTCTTATAGTGTTGTTTGTACATTTTCAGTCTACAATCAAAGCA-CTG
109 AATTGTA-A-A-AACTCTTC--ATA-TGGTGCCTAT-CA---ACACTATA-AAT--AGGCACCTC
* ** * * ** * * * *
150616 C--GAGAATCAAGATCGACAAATCATATCTATGATCCGA-AACTCATAAC-CGATGTCATATCAG
161 CATG-GCAT-TTG-T--ACTAA-GA-A-CT-TTTTGC-ATAA-T-A-AACTC--TTTGA-ATTA-
* *** * ** ** **** * *
150677 TAGTCAACCATTTTCA-ATC-TACATGGGCAAC-C-ATTAAAGGGTAAGAAGAATGACAAGTCAT
209 TTG-CTTTCATTTT-AGTTCTTGGATTAG-AACTCTATT----GGT----TTCTTG-TAGGTC-T
** * * * * ** ** * * *
150738 TGAATTGAATTAAATTGCATTT-AGGTGATTGTTTTA-TTTTAATT-GTAAAAACTCTTC-AT--
261 TGAA--GCCTT-CA-TCCATTTCA--T-CTTGTTATAGCGTTGGTTCCT---AGCTCTACTATAG
* * ** * * * *** * **
150797 TTGGTGCCTATCAACACAATAAATAGGCA-CCTCCA-CGACATTCGTACTAAGAACTTTTTTCAT
316 CTAGTGGGT-T----AC-GT---T--CCACCCTCTATC-AC-TTCG-A-TTCCATCTTTAGT-AT
*** ** ** * * * *** * * * * * **
150860 AATAAACTCTTTGATAGATTGCTTTAATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTATA
365 -AT-TGTTGGTTCCTA-ACT-C-AT-A-TATAGTTAGAGGGTCACAA-TCCATC-CTTT-GAATA
* * * * * * * * **
150925 GGTCTTGAAGCCTTCATCCATTTCATCTA-GATATAACATTACTTC-CTA-GCTC--TACTATAG
420 ---C-T--ATCATTC-TCCA---CACCAACCACA-AACA-TCCTTCACCATTTTCGTTAC-AT--
* * *** * * * * ****
150985 CTAGTGGGCCACGTTTCA-CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAA
470 CCAATCAACCAC-TATCATCAC-C-A-CACTTC--TTTCA--TTTA-CA-A---TCCACTTC-AA
* * ** **** * **
151049 C-TCA-TATAT-AGTTAGAGGGTC-ACA-ATC-CATACTTTGAAT-TACTATCATTGTCCACGCC
521 CTTCATTCTATCATTTCCATTACCTACATA-CACATA-TTTAAATATAC-AT-ATT-TCC-CTTC
** * ** * * ** ** *
151107 AACCATAATC-ATCCTT-CACCATTTT-TGTTACATCCAATCAACCA-CTATCATTACCCCACTT
580 --TTATAA-CGTTGTTTGTA-CATTTTCAG-T-C-TTAAATCAA--AGC-A-C--TA-CGAAGTT
* * * ** *** * * * * * * **
151168 CTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACCT-ACATACACATATTTAA
631 C-TT-A-CTAGAATCAAGATC--GGGCAATC-AT-ATAT--ATGATCTGA-A-ACTCATA-ATCG
*
151232 ATATAC
684 AGAT-C
* * * * * * **** * * *
151238 ATATTTCCCTTCTT-ATAACGTTGTC--TGTACATTTTCAATC-T-AAAA--TCA-AAGCACT-A
1 ATA--T-CATTATTCAT-CCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAG-AATGA
* * * * * * * ** ** ** * *
151294 CGACT-TTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTG--AAACTCATAATCGCG
61 CAAGTCAT-TTAATTGAATTAA-AT--TGC-AT--T-TAGGTGAT-TGTTTTA-TTTTAATTG-T
* * ** *** * * * ** * *
151356 ATCATA-TCATT-AT-TCAT-CC-ATTTTCAATCTACAT-GGACAACCATTAAAAGG--TTAG-A
115 A-AAAACTC-TTCATATGGTGCCTATCAACACTATAAATAGG-C-ACC--TCCATGGCATTTGTA
** * ** * * * * *
151412 AGAATGACAAGTAATTGAATTGAATTAAATTGCATTT-AGGTGATTG-TTTTATTTTAATTGTAA
174 CTAA-G--AACTTTTTGCA-T-AA-TAAACT-C-TTTGA-ATTATTGCTTTCATTTT-A--G---
* * ** * ** * *
151475 AAACTCTTCATTTGG-TGCCTATCAACACTATAAATAGG-CACCTCCACGACATTTGTTCTAAGA
224 ------TTC--TTGGAT---TA-GAACTCTAT---T-GGTTTCTTGTAGGTC--TTG----AAG-
* ** * ** * * * ** * * *
151538 ACTTTTTTCATAATAAACTCTTTGAAGTATTGCATTCATT-TTAGTTCATGAAT-TAGAACTCTA
266 CCTTCATCCAT--TTCA-TC-TTG--TTATAGCGTTGGTTCCTAGCTC-T-ACTATAG----CTA
* * * * * * * * ***
151601 -TCGGTTTCTTGTCGATCTTGAAGCTTTCA--TCCATTCCATC-TT-GTTATAACATTGGTTCCT
319 GTGGGTTACGT-TCCACCCT----CTATCACTTCGATTCCATCTTTAG-TATATTGTTGGTTCCT
* * * ** * * ***
151661 AGCTC-TACTATAGCTT-GTGGGTTACGTTCCACCCTCT--ATCACT-TCGA-T-TCCATC-TTT
378 AACTCATA-TATAG-TTAGAGGGTCACAATCCATCCTTTGAAT-ACTATC-ATTCTCCA-CACCA
**** **** * * * * * * * * *
151718 AGTTTATTGTTGGCTTCTAACTCATATATAGTTAGAAGGTCACAATCCATC-CTTTGAAT-ACTA
438 ACCACAAACAT-CCTTC--AC-CAT-TTTCGTTA-CA--TC-CAATCAACCACTAT-CATCACCA
* ** * * ** *
151781 TCA-TTC-TCCA-TGCCAA-CCACAAATATC--CTTCACCATTCTCGTTACATCCAATCAACCGC
493 -CACTTCTTTCATTTACAATCCAC---T-TCAACTT---CATTCT-ATCATTTCC-AT-TA-C-C
* ** ** * * * * **
151840 TATCATCACCACACTTCTTTCATTTATAACCCACTTCAACTTCATTCTATAA-TTTCCATTACCT
545 TA-CAT-A-CACA--TATTT-AAATAT-ACATATTTC-CCTTC--T-TATAACGTT--GTT-TGT
*** * ** * * * *
151904 ACATACACA-TATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTT
596 ACATTTTCAGT-CTT-AA-AT-CA-A-AGCACTAC---GAA-G-T-TCT-TAC----T-AG----
* ** * * * *
151968 AAATCAA-AGCGCTACGAAGTTCTTAATAGAATTAAGATCGGGCAA-TCATATATTCGATCTGAA
639 -AATCAAGATCG-GGC-AA--TC---ATA-TA-TATGATC-TGAAACTCATA-A-TCGA---G--
152031 ATTC
686 A-TC
* *** *
152035 GTAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGA
1 ATATCA------------TTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGA
* *
152100 AGAATGGCAAGTCATTTATTTGAATTAAATAT-CATTTAGGTGATT-TATTTATTTTAATTGTAA
54 AGAATGACAAGTCATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAA
* *
152163 AAACTCTTCATATGGTGCCTATCAACACCATAAATAGGCACCTCCTTGGCATTTGTACTAAGAAC
117 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAAC
**
152228 TTTTTGCATAATAAACTCTTTGAATTATTTTTTTCATTTTAGTTCTTGGATTAGAACTCTATTGG
182 TTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGG
* * * *
152293 TTTCTTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACT
247 TTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
* *
152358 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTTGATTCCATCTTTATTATATTGTTGGTTCC
312 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCC
* *
152423 TAACTCATATATAGTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAGCCG
377 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACC-
* * *
152488 A-AAACAACCTTCACCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATT
441 ACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
* *
152552 TATAACCCACTTCAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATA
506 TACAATCCACTTCAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATA
* * *
152617 TATCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTACGAAGTTCTTAA
571 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTAC
* * *
152682 TAGAATTAAGATCGGGCAATCATATATTTGATCTGAAATTCATAATCGAGATC
636 TAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
*
152735 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* *
152800 CATTTATTTGAATTAAATAT-CATTTTGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
* *
152863 TGTTGCCTATCAACACTATAAATAGGCACCTCCTTGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
*
152928 AAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * * *
152993 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCATATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
153058 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACACATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
153123 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
*
153188 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAGTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * *
153253 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* *
153318 AACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
** *
153372 GGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * * * **
153412 ATATCATTATTCAACCATTTTCAATCGACATGGGAACCCAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * * *
153476 TAATTGAATTGAATTAAATTGCATTTAGGTAATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
153541 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAAGAACTTTTTTCATAATA
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATA
** * * * * * *
153606 AACTCTTTGAAAAATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGATC
195 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * * *
153671 TTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCTCTACTATAGCTTGTGGGA
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
*
153736 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATATA
325 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATA
* ** *
153801 GTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCCTTCA
390 GTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTCA
* * * *
153866 CCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTTCA
455 CCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCA
*
153931 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTTAATATACATATTTCCCTTCTTATA
520 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATA
* * *
153996 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTACGAAGTTCTTAATAGAATTAAGATCG
585 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCG
* *
154061 GGCAATCATATAT-TCGATCTGAAATTCGTAATCGAGATC
650 GGCAATCATATATAT-GATCTGAAACTCATAATCGAGATC
* *
154100 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGATAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* * *
154165 CATTTATTTGAATTAAATAT-CATTTAGGTG-TTTTATTTATTTTAATTGTAAAAACTCTTCTTA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
154228 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
* *
154293 AAACTCTTTCAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
154358 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
154423 TTACGTTCCACCCTCTATCACTTCGTTTCCATCTTTAGTATATTGTTGGTTCCTAACCCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
154488 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
* * *
154553 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACATTTCTTTCATTTACAATCCAGTTA
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * *
154618 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* *
154683 AACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
** *
154737 GGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * **
154777 ATATCATTATTCAACCATTTTCAATCTACATGGGAAACCAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * *
154841 TAATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
154906 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAAGAACTTTTTTCATAATA
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATA
* ** * * * * * *
154971 AACTCTTCGAAAAATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGATC
195 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * * * *
155036 TTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCACTACTATAGCTTGTGGGA
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
*
155101 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATATA
325 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATA
* ** *
155166 GTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCCTTCA
390 GTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTCA
* * * *
155231 CCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTTCA
455 CCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCA
*
155296 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTTAATATACATATTTCCCTTCTTATA
520 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATA
* * *
155361 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTACGAAGTTCTTAATAGAATTAAGATCG
585 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCG
* *
155426 GGCAATCATATAT-TCGATCTGAAATTCGTAATCGAGATC
650 GGCAATCATATATAT-GATCTGAAACTCATAATCGAGATC
* *
155465 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGATAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* * *
155530 CATTTATTTGAATTAAATAT-CATTTAGGTG-TTTTATTTATTTTAATTGTAAAAACTCTTCTTA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
155593 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
* *
155658 AAACTCTTTCAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
155723 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
155788 TTACGTTCCACCCTCTATCACTTCGTTTCCATCTTTAGTATATTGTTGGTTCCTAACCCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
155853 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
* * *
155918 ACCATTTTCGTTACATCCAATCAACCACTACCATCACCACATTTCTTTCATTTACAATCCAGTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * * *
155983 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTGT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* *
156048 AACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G--C--A--AGACTCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
** *
156102 GGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * * * **
156142 ATATCATTATTCAACCATTTTCAATCTACATGGGCAACAAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * * * *
156206 TAATTGAATTAAATTAAATTACATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * * *
156271 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAATAACTTTTTTCATAATA
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATA
* * * * * * *
156336 AACTCTTTGAAATATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGATC
195 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * *
156401 TTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCTCTACTATAGCTTGTGGGT
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
*
156466 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATATA
325 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATA
* ** *
156531 GTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCCTTCA
390 GTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTCA
* * * *
156596 CCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTTCA
455 CCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCA
*
156661 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATATATATTTCCCTTCTTATA
520 ACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATA
* * *
156726 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTACGAAGTTCTTAATAGAATTAAGATCG
585 ACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCG
* *
156791 GGCAATCATATAT-TCGATCTGAAATTCGTAATCGAGATC
650 GGCAATCATATATAT-GATCTGAAACTCATAATCGAGATC
* *
156830 ATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
*
156895 CATTTATTTGAATTAAATAT-CATTTAGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
156958 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
*
157023 AAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
157088 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
157153 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACCCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
157218 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
*
157283 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAGTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * * *
157348 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTGT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* *
157413 AACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
* ** *
157467 AGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * **
157507 ATATCATTATTCAACCATTTTCAATCTACATGGGAAACCAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * *
157571 TAATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
157636 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAAGAACTTTTTTCATAATA
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATA
** * * * * * *
157701 AACTCTTTGAAAAATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGATC
195 AACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTC
* * * * * *
157766 TTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCTCTACTATAGCTTGTGGGA
260 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
* *
157831 TACGTTCCACCCTCTATCACTTCAATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATATA
325 TACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATA
* *
157896 GTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAGCCGA-AAACATCCTTC
390 GTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACC-ACAAACATCCTTC
* * * *
157960 ACCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
*
158025 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATATCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* * * *
158090 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTATGAAGTTCTTAATAGAATTAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
* *
158155 GGGCAATCATATATTTGATCTGAAATTCATAATCGAGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
*
158195 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* *
158260 CATTTATTTGAATTAAATAT-CATTTTGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
*
158323 TGGTGCCTATCAACACTATAAATAGGCACCTCCTTGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
*
158388 AAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
158453 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
158518 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACACATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * **
158583 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGTAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
* *
158648 ACCATTTTCGTTACATCCAATCAACCACTGTCATCACCACACTTCTTTCATTTACAATCCAGTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * * *
158713 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATATATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* *
158778 AACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
** *
158832 GGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * **
158872 ATATCATTATTCAACCATTTTCAATCTACATGGGAAACCAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * *
158936 TAATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
159001 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAAGATA-TTTTTTCATAAT
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGA-ACTTTTTGCATAAT
* * * * * * *
159065 AAACTCTTTGAAGTATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGAT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * * * *
159130 CTTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCTCTACTATAGCTTGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * *
159195 ATACGTTCCACCCTCTATCACTTCAATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* *
159260 AGTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAGCCGA-AAACATCCTT
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACC-ACAAACATCCTT
* * * *
159324 CACCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTT
453 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
*
159389 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATATCCCTTCTTA
518 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
* * * *
159454 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCGCTATGAAGTTCTTAATAGAATTAAGAT
583 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGAT
* *
159519 CGGGCAATCATATATTTGATCTGAAATTCATAATCGAGATC
648 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
*
159560 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
* *
159625 CATTTATTTGAATTAAATAT-CATTTTGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
*
159688 TGGTGCCTATCAACACTATAAATAGGCACCTCCTTGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
*
159753 AAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
159818 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
159883 TTACGTTCCACCCTCTATCACTTCGTTTCCATCTTTAGTATATTGTTGGTTCCTAACCCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
159948 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
*
160013 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACATTTCTTTCATTTACAATCCAGC-T
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCA-CTT
* * * * * *
160077 CAACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTG
518 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
* *
160142 TAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGAT
583 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGAT
** *
160196 CGGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
648 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * * **
160237 ATATCATTATTCAACCATTTTCAATCTACATGGGCAACCAT-TAAAGTGCAAGAAGAATGACAAG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* * *
160301 TAATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
160366 GGTGCCTATCAACACTATGAATAGGCACCTCCACGACATTTGTACCAAGATA-TTTTTTCATAAT
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGA-ACTTTTTGCATAAT
* * * * * * *
160430 AAACTCTTTGAAGTATTGCATTCATTTTAGTTCATGAATTAGAACTCTATCGGTTTCTTGTCGAT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * * * *
160495 CTTGAAGCTTTCATCCATTCCATCTTGTTATAACATTGGTTCCTAGCTCTACTATAGCTTGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
160560 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* ** *
160625 AGTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
* * * *
160690 ACCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCACTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
160755 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* * * * *
160820 AACGTTTTTTGTACTTTTTCAGTCTTAAATCAAAGCGCTACGAAGTTCTTAATAGAATTAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
* *
160885 GGGCAATCATATAT-TCGATCTGAAATTCGTAATCGAGATC
649 GGGCAATCATATATAT-GATCTGAAACTCATAATCGAGATC
*
160925 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGGCAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
*
160990 CATTTATTTGAATTAAATAT-CATTTAGGTGATT-TATTTATTTTAATTGTAAAAACTCTTCATA
66 CATTTAATTGAATTAAAT-TGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAACTCTTCATA
161053 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
129 TGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAT
* *
161118 AAACTCTTTCAATTATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * *
161183 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCCCTACTATAGCTAGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
161248 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACCCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* * *
161313 AGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
* *
161378 ACCATTTTCGTTATATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAGTTC
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
* * * * *
161443 AACTTTACTCTATCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTAT
519 AACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTAT
* * *
161508 AACGTTGTTTGTACATTTTTAGTCTTCAATCAAAGCACT-----G------CGAGAATCAAGATC
584 AACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATC
** *
161562 GGTAAATCATATATATGATCTGAAACTCATAATCGCGATC
649 GGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
* * * ** *
161602 ATATCATTATTCAACCATTTTCAATCTACATGGGCAACCAT-TAAAGTGCAAGAAGAATGACATG
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAG-GTTAGAAGAATGACAAG
* *
161666 TCATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATTT
65 TCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATAT
* * * * *
161731 GGTGCCTATCAACACTATAAGTAGGCACCTCCACGACATTTGTACCAAGATA-TTTTTTCATAAT
130 GGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGA-ACTTTTTGCATAAT
** * * * * *
161795 AAACTCTTTGAAAAATTGCATTCATTTTAGTTCATGAATTAGAACTCTATTGGTTTCTTGTCGAT
194 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGT
* * * * * *
161860 CTTGAAGCTTTCATCCATTCCATCTTGTTATAGCATTGGTTCCTAGCTTTGCTATAGCTTGTGGG
259 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
161925 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTATTATATTGTTGGTTCCTAACTCATATAT
324 TTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAT
* ** *
161990 AGTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCCTTC
389 AGTTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTC
* * * *
162055 ACCATTCTCGTTACCTCCAATCAACCGCCATCATCACCACACTTCTTTCATTTACAA-CGCACTT
454 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATC-CACTT
162119 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
518 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
* *
162184 TAACGTTGTTTGTACATTTTCAGTCATAAATCAAAGCGCTACGAAGTTCTTACTAGAATCAAGAT
583 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGAT
*
162249 CGGGCAATCATATATATGATCAGAAACTCATAATCGAGATC
648 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATC
*
162290 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAGGGTTAGAATAAAGACAAGT
1 ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGG-T----T--AG--AAG-
*
162355 CATTTAATTGAATTAAATAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTT
56 -----AA-TG------ACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTT
*
162420 AATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTTTA
109 AATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTA
* * * *
162485 CTAAGAATTTTTTGCATAATAAACTCTTTG-ATAGATTGCATTAATTTTAGTTCTTGGATTAGAA
174 CTAAGAACTTTTTGCATAATAAACTCTTTGAAT-TATTGCTTTCATTTTAGTTCTTGGATTAGAA
* * * **
162549 CTCTATAGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGATATAACGTTACTTCCT
238 CTCTATTGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCT
* * *
162614 ACCTCTACTATAGCTAGTGGGTCACGTTCTACCCTCTATCACTTCGATTCCATCTTTAGTATATT
303 AGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATT
* *
162679 GTTGGTTTCTAACTCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTCTCC
368 GTTGGTTCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCC
* * * * *
162744 ACGCCAACCACAAACATCCTTAACCATTTTCCTTACATCCATTAAACCACTATCATCACCACACT
432 ACACCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACT
* *
162809 TCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAA
497 TCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAA
*
162874 ATATACATA-TTCTCTTCTTATAAC
562 ATATACATATTTCCCTTCTTATAAC
162898 ATTTGATGCA
Statistics
Matches: 14002, Mismatches: 1930, Indels: 1253
0.81 0.11 0.07
Matches are distributed among these distances:
670 1 0.00
671 2 0.00
672 2 0.00
673 5 0.00
674 11 0.00
675 5 0.00
676 47 0.00
677 4959 0.35
678 426 0.03
679 11 0.00
680 1 0.00
681 13 0.00
682 16 0.00
683 10 0.00
684 3 0.00
686 1 0.00
687 22 0.00
688 4789 0.34
689 1318 0.09
690 102 0.01
691 551 0.04
692 12 0.00
693 11 0.00
694 1 0.00
695 7 0.00
697 5 0.00
698 6 0.00
699 2 0.00
700 4 0.00
701 1 0.00
702 5 0.00
703 8 0.00
704 6 0.00
705 5 0.00
706 4 0.00
707 8 0.00
708 11 0.00
709 4 0.00
710 338 0.02
711 144 0.01
712 3 0.00
713 4 0.00
714 3 0.00
715 5 0.00
716 10 0.00
717 10 0.00
718 13 0.00
719 1 0.00
720 3 0.00
721 2 0.00
722 1 0.00
724 2 0.00
725 2 0.00
726 7 0.00
727 2 0.00
728 4 0.00
729 3 0.00
730 12 0.00
731 6 0.00
732 9 0.00
733 10 0.00
734 1 0.00
735 4 0.00
736 3 0.00
737 2 0.00
738 9 0.00
739 5 0.00
740 12 0.00
741 8 0.00
742 1 0.00
743 12 0.00
744 7 0.00
745 6 0.00
746 9 0.00
747 2 0.00
748 5 0.00
749 2 0.00
750 4 0.00
751 14 0.00
752 6 0.00
753 4 0.00
754 5 0.00
755 5 0.00
756 6 0.00
757 14 0.00
758 13 0.00
759 7 0.00
760 15 0.00
761 18 0.00
762 19 0.00
763 48 0.00
764 33 0.00
765 35 0.00
766 12 0.00
767 13 0.00
768 18 0.00
769 8 0.00
770 9 0.00
771 12 0.00
772 17 0.00
773 21 0.00
774 21 0.00
775 13 0.00
776 26 0.00
777 15 0.00
778 17 0.00
779 22 0.00
780 18 0.00
781 29 0.00
782 7 0.00
783 1 0.00
784 18 0.00
785 13 0.00
786 7 0.00
787 8 0.00
788 9 0.00
789 14 0.00
790 15 0.00
791 18 0.00
792 22 0.00
793 22 0.00
794 15 0.00
795 17 0.00
796 18 0.00
797 11 0.00
798 5 0.00
799 3 0.00
800 10 0.00
801 12 0.00
802 7 0.00
803 2 0.00
804 8 0.00
805 17 0.00
806 26 0.00
807 24 0.00
808 36 0.00
809 15 0.00
810 5 0.00
812 6 0.00
813 16 0.00
814 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (688 bp):
ATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGT
CATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATG
GTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAA
ACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCTTGTAGGTCT
TGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTT
ACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAG
TTAGAGGGTCACAATCCATCCTTTGAATACTATCATTCTCCACACCAACCACAAACATCCTTCAC
CATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAA
CTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAA
CGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCGG
GCAATCATATATATGATCTGAAACTCATAATCGAGATC
Found at i:150560 original size:241 final size:241
Alignment explanation
Indices: 150137--150590 Score: 721
Period size: 241 Copynumber: 1.9 Consensus size: 241
150127 CTAACTCATA
* ** *
150137 TATAGTTAGAAGGTCACAATCCATCCTTTGAATACTATCATTCTCCATGCCAACCACAAATATCC
1 TATAGTTAGAAGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAACCACAAACATCC
* *
150202 TTCACCATTCTCGTTACATCCAATCAACCGCTATCATCACCACACTTCTTTCATTTATAACCCAC
66 TTCACCATTCTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAACCCAC
*
150267 TTCAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCT
131 TTCAACTTCATTCTACCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCT
150332 TATAACGTTGTTTGTACACATATTTAAATATACATATTTCCCTTCT
196 TATAACGTTGTTTGTACACATATTTAAATATACATATTTCCCTTCT
* * *
150378 TATAGTTAGAGGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAGCCGCAAACATCC
1 TATAGTTAGAAGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAACCACAAACATCC
* * *
150443 TTCACCATTTTCGTTACATCCAATCAACCACTATCATCATCACACTTCTTTCATTTACAATCCAC
66 TTCACCATTCTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAACCCAC
* * * *
150508 TT-AACCTTTATTCTACCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTC
131 TTCAA-CTTCATTCTACCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTC
**
150572 TTATAGTGTTGTTTGTACA
195 TTATAACGTTGTTTGTACA
150591 TTTTCAGTCT
Statistics
Matches: 193, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
240 2 0.01
241 191 0.99
ACGTcount: A:0.30, C:0.27, G:0.05, T:0.37
Consensus pattern (241 bp):
TATAGTTAGAAGGTCACAATCCATCATTTGAATACTATCATTCTCCACACCAACCACAAACATCC
TTCACCATTCTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAACCCAC
TTCAACTTCATTCTACCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCT
TATAACGTTGTTTGTACACATATTTAAATATACATATTTCCCTTCT
Found at i:162376 original size:22 final size:22
Alignment explanation
Indices: 162351--162394 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
162341 GAATAAAGAC
162351 AAGTCATTTAATTGAATTAAAT
1 AAGTCATTTAATTGAATTAAAT
162373 AAGTCATTTAATTGAATTAAAT
1 AAGTCATTTAATTGAATTAAAT
162395 TGCATTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (22 bp):
AAGTCATTTAATTGAATTAAAT
Found at i:165645 original size:678 final size:677
Alignment explanation
Indices: 164531--165851 Score: 2076
Period size: 678 Copynumber: 1.9 Consensus size: 677
164521 AGTTCTTAAT
* * * * *
164531 AGAATCAAGATCGGGCAATCATATATATGATCTGTAACTCATAATCGAGATCATATAATTATTCA
1 AGAATCAAGATCGGGCAATCATATATAAGATCCGAAACACATAACCGAGATCATATAATTATTCA
* * * *
164596 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAATAATGACAAGTCATTTAATTGAAT
66 ACCATTTTCAATCTACATGGGCAACCATCAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAAT
* * *
164661 TAAATTGCATTTAGGTGATTGTTTTACTTTAATTGTAAAAACTCTTCACATGGTGTCTATCAACA
131 TAAATTACATTTAGGTGATTGTTTTACTTTAATTGTAAAAACTATTCACATGGTGCCTATCAACA
* * * * *
164726 CTCTAAATAGGCACCTCCATGGCATTTGTAGTAAGAACTTTTTGCATAATAAACTCTTTGAATTA
196 CTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATAA
* * *
164791 TTGCTTTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGGCTTCATC
261 TTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGATCTTGAAGGCTTCATC
* * * *
164856 TATTTCATCTTGTTATAGTGTTGGTTCCTTGCTTTACTATAGCTAGTGGGTCATGTTCCACCCTC
326 CATTTCATCTTGTTATAGTGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
* *
164921 TATAACTTCGAATCCATCTTTAGTATATTGTTGGTTTATAACTCATATATAGTTAGACA-GTCAC
391 TATAACTTCGAATCCATCTTTAGTATATTGTTGGTTCATAACTCATATAAAGTTAGA-AGGTCAC
* * *
164985 AATCCATCCTTTGAATTACTATCATTCTCCACGTCAACCACAAACATCCTTCACCATTTTCGTTA
455 AATCCATCCTTTGAA-TACTATCATTCTCCACGCCAACCAAAAACATCCTACACCATTTTCGTTA
* *
165050 CATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTTATTCTAT
519 CATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACGTCATTCTAT
* * * *
165115 CATTTTCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAAAGTTGTTTGTA
584 CATTTCCATTACCTACATACACATATTTAAATATACATATATCCCTTCTTATAAAGTTGTTTGTA
165180 CATTTTCAGTCTTCAATCAAAGCACTGCG
649 CATTTTCAGTCTTCAATCAAAGCACTGCG
* *
165209 AGAATCAAGATC-GGCAAATCATATATAAGATCCGAAACACATAACCGCGATCATATCATTATTC
1 AGAATCAAGATCGGGC-AATCATATATAAGATCCGAAACACATAACCGAGATCATATAATTATTC
* * *
165273 AACCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATTACAAGTCATTGAATTGAA
65 AACCATTTTCAATCTACATGGGCAACCATCAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAA
* **
165338 TTAAATTACATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTATTCATTTGGTGCCTATCAAC
130 TTAAATTACATTTAGGTGATTGTTTTACTTTAATTGTAAAAACTATTCACATGGTGCCTATCAAC
*
165403 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAA-A
195 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATA
*
165467 AGTTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAA-GCTTTC
260 A-TTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGATCTTGAAGGC-TTC
* *
165531 ATCCATTTTATCTTGTTATAGCT-TTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCAC
323 ATCCATTTCATCTTGTTATAG-TGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCAC
* * *
165595 CCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATAAAGTTAGAAGGT
387 CCTCTATAACTTCGAATCCATCTTTAGTATATTGTTGGTTCATAACTCATATAAAGTTAGAAGGT
165660 CACAATCCATCCTTTGAATACTATCATTCTCCACGCCAACCAAAAACATCCTACACCATTTTCGT
452 CACAATCCATCCTTTGAATACTATCATTCTCCACGCCAACCAAAAACATCCTACACCATTTTCGT
165725 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACGTCATTCT
517 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACGTCATTCT
* * *
165790 ATCATTTCCATTACCTACATACAGATATTTTAATATACATATATCCCTTCTTATAACGTTGT
582 ATCATTTCCATTACCTACATACACATATTTAAATATACATATATCCCTTCTTATAAAGTTGT
165852 GATGTGAGGC
Statistics
Matches: 585, Mismatches: 53, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
677 169 0.29
678 415 0.71
679 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (677 bp):
AGAATCAAGATCGGGCAATCATATATAAGATCCGAAACACATAACCGAGATCATATAATTATTCA
ACCATTTTCAATCTACATGGGCAACCATCAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAAT
TAAATTACATTTAGGTGATTGTTTTACTTTAATTGTAAAAACTATTCACATGGTGCCTATCAACA
CTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATAA
TTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGATCTTGAAGGCTTCATC
CATTTCATCTTGTTATAGTGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
TATAACTTCGAATCCATCTTTAGTATATTGTTGGTTCATAACTCATATAAAGTTAGAAGGTCACA
ATCCATCCTTTGAATACTATCATTCTCCACGCCAACCAAAAACATCCTACACCATTTTCGTTACA
TCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACGTCATTCTATCA
TTTCCATTACCTACATACACATATTTAAATATACATATATCCCTTCTTATAAAGTTGTTTGTACA
TTTTCAGTCTTCAATCAAAGCACTGCG
Found at i:169553 original size:24 final size:24
Alignment explanation
Indices: 169526--169577 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
169516 TTTCTTTACT
169526 TTTTCTTCTTTTAGAGTGATTCAC
1 TTTTCTTCTTTTAGAGTGATTCAC
* * *
169550 TTTTCTTCTTTTGGAGTGCTTGAC
1 TTTTCTTCTTTTAGAGTGATTCAC
169574 TTTT
1 TTTT
169578 TCTTTGCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (24 bp):
TTTTCTTCTTTTAGAGTGATTCAC
Found at i:173752 original size:20 final size:20
Alignment explanation
Indices: 173727--173765 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
173717 TTTATCTTCG
*
173727 TTAAAATTATGTATTTTCAT
1 TTAAAATCATGTATTTTCAT
*
173747 TTAAAATCATGTGTTTTCA
1 TTAAAATCATGTATTTTCA
173766 AAGGGGTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (20 bp):
TTAAAATCATGTATTTTCAT
Found at i:183014 original size:278 final size:278
Alignment explanation
Indices: 182515--183070 Score: 943
Period size: 278 Copynumber: 2.0 Consensus size: 278
182505 CGAATCATGG
*
182515 CTATCTCCATTTCTTTGAAATAATCTTCAACGCTCTTACTCCCTTGTTTAAGATTTTATAGCTTA
1 CTATCTCCATTTCTTTGAAATAATCTTCAACGCTCCTACTCCCTTGTTTAAGATTTTATAGCTTA
182580 TGAAAGAGATCTCTGTGATAGTGAGTAGCCACGAACCTTTTCCTCATAATAGCCTTCATTTCTTC
66 TGAAAGAGATCTCTGTGATAGTGAGTAGCCACGAACCTTTTCCTCATAATAGCCTTCATTTCTTC
* * *
182645 CCACGTAGTGATGGGACGTTCACCACTTTGTCTTCTTGAACTCACTAATTGACCCCACCAGACTA
131 CCACGTAGTGATGGGACGTTCACCACTTTGTCTTCTTAAACTCACCAATTAACCCCACCAGACTA
* *
182710 GGGCATAGTCCACGAATTCCATAGCAGCAAGCCTAACCTTCTTTTGTTCTGTATAGTTTTGACAT
196 GGGCATAGTCCACGAATTCCATAGCAGCAAGCCTAACCTTCTTTTGCTCCGTATAGTTTTGACAT
*
182775 TCAAAAATGTGTTCGATC
261 TAAAAAATGTGTTCGATC
* *
182793 CTATCTCCATTTCTTTGAAATAATCTTCAACGCTCCTGCTCCCTTGTTTAAGATTTTGTAGCTTA
1 CTATCTCCATTTCTTTGAAATAATCTTCAACGCTCCTACTCCCTTGTTTAAGATTTTATAGCTTA
* * * *
182858 TGATAGAGATCTTTGTGATAGTGAGTAGGCACGACCCTTTTCCTCATAATAGCCTTCATTTCTTC
66 TGAAAGAGATCTCTGTGATAGTGAGTAGCCACGAACCTTTTCCTCATAATAGCCTTCATTTCTTC
*
182923 CCACGTAGTGATGGGACGTTCACCA-TTTCGTCTTCTTAAACTCACCAATTAATCCCACCAGACT
131 CCACGTAGTGATGGGACGTTCACCACTTT-GTCTTCTTAAACTCACCAATTAACCCCACCAGACT
* *
182987 AGGGCATAGTCCACGAATTCTATAGCAGCAAGCCTGACCTTCTTTTGCTCCGTATAGTTTTGACA
195 AGGGCATAGTCCACGAATTCCATAGCAGCAAGCCTAACCTTCTTTTGCTCCGTATAGTTTTGACA
*
183052 TTAAAAAATGTGTTTGATC
260 TTAAAAAATGTGTTCGATC
183071 TTGATTACCT
Statistics
Matches: 260, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
277 3 0.01
278 257 0.99
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.35
Consensus pattern (278 bp):
CTATCTCCATTTCTTTGAAATAATCTTCAACGCTCCTACTCCCTTGTTTAAGATTTTATAGCTTA
TGAAAGAGATCTCTGTGATAGTGAGTAGCCACGAACCTTTTCCTCATAATAGCCTTCATTTCTTC
CCACGTAGTGATGGGACGTTCACCACTTTGTCTTCTTAAACTCACCAATTAACCCCACCAGACTA
GGGCATAGTCCACGAATTCCATAGCAGCAAGCCTAACCTTCTTTTGCTCCGTATAGTTTTGACAT
TAAAAAATGTGTTCGATC
Found at i:187447 original size:24 final size:21
Alignment explanation
Indices: 187412--187454 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
187402 GGCTCATTCT
*
187412 TTTGAATTTCAAGAGGTACATCC
1 TTTGAATGTCAA-AGG-ACATCC
187435 TTTGAAATGTCAAAGGACAT
1 TTTG-AATGTCAAAGGACAT
187455 ATCTTGGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 7 0.39
24 7 0.39
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGAATGTCAAAGGACATCC
Found at i:193910 original size:6 final size:6
Alignment explanation
Indices: 193890--193933 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
193880 GATGTAGGAG
*
193890 TCTTTT TC-ATT TCTTTT TCTTTT TCTTCTT TCATTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTT-TT TC-TTTT TCTTTT T
193934 GTTGCTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 4 0.12
6 19 0.58
7 8 0.24
8 2 0.06
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (6 bp):
TCTTTT
Found at i:193928 original size:14 final size:12
Alignment explanation
Indices: 193890--193933 Score: 54
Period size: 11 Copynumber: 3.6 Consensus size: 12
193880 GATGTAGGAG
*
193890 TCTTTTTC-ATT
1 TCTTTTTCTTTT
193901 TCTTTTTCTTTT
1 TCTTTTTCTTTT
193913 TCTTCTTTCATTTT
1 TCTT-TTTC-TTTT
193927 TCTTTTT
1 TCTTTTT
193934 GTTGCTTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 8 0.28
12 6 0.21
13 7 0.24
14 8 0.28
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (12 bp):
TCTTTTTCTTTT
Found at i:194360 original size:35 final size:35
Alignment explanation
Indices: 194314--194428 Score: 142
Period size: 35 Copynumber: 3.3 Consensus size: 35
194304 TGGTAAGGGA
*
194314 ATGGTGATGATATAGGCGTGAAATGGTGATAGAAG
1 ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
* * *
194349 ATGGTAATGATATAGGTGT-ACAATGGTAATGGAAG
1 ATGGTGATGATATAGGCGTGA-AATGGTGATGGAAG
* * *
194384 ATGGTGATGTTATAGGCATGAAAATGGAGATGGAAG
1 ATGGTGATGATATAGGCGTG-AAATGGTGATGGAAG
194420 ATGGTGATG
1 ATGGTGATG
194429 TTTAGGTAGT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
34 1 0.01
35 44 0.66
36 21 0.31
37 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.36, T:0.27
Consensus pattern (35 bp):
ATGGTGATGATATAGGCGTGAAATGGTGATGGAAG
Found at i:195542 original size:24 final size:23
Alignment explanation
Indices: 195515--195559 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
195505 AAAAAAAAGC
195515 ATATAATAA-GCTAAATAATATGAG
1 ATATAATAATGC-AAAT-ATATGAG
195539 ATATAATAATGCAAATATATG
1 ATATAATAATGCAAATATATG
195560 GTTCATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 13 0.65
25 2 0.10
ACGTcount: A:0.53, C:0.04, G:0.11, T:0.31
Consensus pattern (23 bp):
ATATAATAATGCAAATATATGAG
Found at i:196689 original size:13 final size:14
Alignment explanation
Indices: 196664--196698 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
196654 ACTTCAACTT
*
196664 CATTCTATCATTTC
1 CATTCTTTCATTTC
196678 CA-TCTTTCATTTC
1 CATTCTTTCATTTC
196691 CATTCTTT
1 CATTCTTT
196699 TATACACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.17, C:0.29, G:0.00, T:0.54
Consensus pattern (14 bp):
CATTCTTTCATTTC
Found at i:198516 original size:688 final size:689
Alignment explanation
Indices: 195739--204272 Score: 12683
Period size: 689 Copynumber: 12.4 Consensus size: 689
195729 GATCACATCA
* *
195739 TATAGCATTGGTTCCTAGCTCTACTATAGTTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
*
195804 CCATCTTTAGTATATTGTTGGTTTCTAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * *
195869 ATTACTATCATTGTCCACACCAACCACAAACGTCCGTCACCATTTTCCTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* *
195934 CTATCACCACCACACTTCTTTCATTTACAATCCACTTCAACCTCATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
*
195999 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
* ** * * * *
196064 AATCAAAGCAGTTTGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATAATATGAAATT
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
* * *
196129 CATAATAGAGATCATATCTTTATTCATCCATTTTCAATCTACATAGGCAACCATCAAAGGGTTAG
391 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG
* * *
196194 AAGAATGACAAGACATTTAATTGAATTAAATTGCATTTAGGAGATCGTTTTATTTTAATTGTAAA
456 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * ** * *
196259 AACTCTTTATATGGTGCCTATCAACACTATAAATAGGCACCACTGTGCCATTTGTACTAAGAGCT
521 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* *
196324 TTTTGCATAATAAACTCTTTGAATGATTGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
586 TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
* * * * *
196389 TTCTAGTCGATCTTGAATTCGTCATCCATTTCATCTTGT
651 TTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* * *
196428 TATAGCTTTGGTTCCTATCTCTACTAGAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* *
196493 CCATCTTTAGTATATTGTTGTTTTCTAACTCATCTA-A-TTAGAGGGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * *
196556 ATTACTATCATTGCCCACGCCAACCAAAAACATCCTTCACCATTTTCTTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
** *
196621 CTATTTTTACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATCTTTC
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCA-TT---TC---C
*
196686 ATTTCCATTCTTTTATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA
254 A-TT--A--CTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA
* * * * *
196751 TTTTCAGTCTTAAAT-ATAAGCGCTGCAAAGTTCTTAATAGAATCAAGATCGGGAAAACATATAT
314 TTTTCAGTCTTAAATCA-AAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATAT
*
196815 ATGATCTGAAACACATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACC
378 ATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACC
* * *
196880 ATCAAAAGGTTAGAAGAATGATAAGTCATTTAATTGAATTAAATTGCATTTTGGTGATTGTTTTA
443 ATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTA
* * * *
196945 TTTTAATTATAAAAACTCTTTATATGGTGGCTATCAACACTATAAATAGGCACCTCCATGGAATT
508 TTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATT
* ** ** *
197010 TCTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTTATTTCATTTTAGTTCTTGAATTA
573 TGTACTAAGAACTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTA
* *
197075 GAACTATATCGGTTTCTTGTAGGTCTT----TCTTCATCCATTTTATCTTGT
638 GAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* *
197123 TATAGCATTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCCATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * *
197188 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATTCATTCATTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * *
197253 ATTACTATCATTGTCGACGCC-ACCTACAAAAATCCTTCACCATTTTCCTTACATCTAATCAACC
131 ATTACTATCATTGTCCACGCCAACC-ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACC
* * *
197317 ACTATCATCACCACACTTTTTTCATTTACAATCCACTTGAACTTCATTCTATCATTTTCATTACT
195 ACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACT
*
197382 TTCATACACATATTTAAATATACATATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTT
260 TTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTT
* ** **
197447 CAATCAAAGCACTGCGTATTTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAA
325 AAATCAAAGCACTGCG-AAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAA
* * * * * * *
197512 CACATAATCGAGTTCATATCATTATTAATCCTTTTTCAATCTACATGGGCAACCATCAACGTGTA
389 CTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTT
* * * * *
197577 AGAAGAATTACAAGTCATTTAATTGAATTAAATTTCATTTAGTTCATTGATTTATTTTAATTGTA
454 AGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTA
* ** *
197642 AAAACTCTTCATATGGTGCCTATCAACATTATAAATAGGCACCTCCATGGCATTTGTAAAAAGAC
519 AAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAA
* ** * * *
197707 CTTTTTGCATAATAAACTCTCTGAAAGATACCTTTCATTTTATTTCTTGGATTAAAACTCTATCA
584 CTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCG
* * * **
197772 GTTTCTTATCGGTCTTGAATTCGCCATCCATTTCATCTTGT
649 GTTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* *
197813 TATAGCTTTGGTTCCTAGCTCTACTATAGCTAATGGGTCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * *
197878 CTATCTTTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTTACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * * *
197943 ATTACTATCATTGTCCACACTAACCATAAACATCCTTCACCATTTTCCTTATATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
*
198008 CTATCATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
*
198073 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG-ACATTTTGAGTCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
* * *
198137 AATCAAAGCACTGTGAAGTTTTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACT
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
* **
198202 CATAATAGAGATCATATCATTATTCATCCATTTTTGATCTACATGGGCAACCATCAAAGGGTTAG
391 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG
* * * *
198267 AAGAACGACAAGTCATTTAATTGAATTAAATTTCATTTAGGAGATTATTTTATTTTAATTGTAAA
456 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* *
198332 AACTGTTCATATGGTGCCAATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
521 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* * *
198397 TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTATTAGATTAGAACTCTATCGAT
586 TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
*
198462 TTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGT
651 TTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* *
198501 TATAGCGTAGGTTCCTAGGTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * * *
198566 CCATCTTTAGTATATTGTTGGTTTCTAACTCAAATATAGTTAGAAGGTTACAATCCATCCTTTAA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * * *
198631 ATTATTATCATTGTCCATGCCAACCACAAACGTCCTTCACCATTTTCCTTACATACAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* * * *
198696 CTATCATCACCACACTTCTTTCCTTTAGAATCCACTTAAACTTTATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
* **
198761 TCATACACATATTTAAATATACATATTTCCCTTCTTATAATGTTGTTCATACATTTTCAGTCTTC
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTT-
* * *
198826 AAA-CAAAGCACTGCGATGTTCTTACTATAATCAAGATTGGGCAATCATATATATGATCTGAAAC
325 AAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAAC
* * *
198890 TCATAATCGAGATCATATCATTATTCATCCATTTTCAGTCTACATGGGCAACCATCAAAGTGTAA
390 TCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTA
* * * * *
198955 GAAGAATAACAATTCATTTAATTGATTTAAATTGCA-TTAAGTGATCGTTTTATTTTAATTGTAA
455 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * * * * *
199019 CAACTCTTAATATGGTGCCTATCAACACTATAAACAGGCACCACCGTGGCATTTGTATTAAGAAC
520 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAAC
* * * *
199084 TTTATGCATAATAAAATCTCTGAATGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGG
585 TTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGG
* * *
199149 TTTCTTGTCGGTCTTGAATTCGTCATCCATTTCATCTTGT
650 TTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* * * * *
199189 TATAGCTTTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACATTCCACCCCCTATCACTTTGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
*
199254 CCATCTTTAGTATATTGTTGGTTTCTAGCTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * *
199319 ATTACTATCATTGCCCATGCCAACCACAAACATCCTTAACCATTTTCCTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* * *
199384 CTATTATCAACACACTTCTTTCATTTAAAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
* * *
199449 ACATACACATATTTAAATATACATATTTCCTTTCTTATAATGTTGTTTGTACATTTTCAGTCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
* * * * * * *
199514 AATCAAAGCACTGGGAAGTTCTTAATGGAAT-AATTATCGGGAAATCATACATGTGATCTGAAAC
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAA-GATCGGGCAATCATATATATGATCTGAAAC
* *
199578 TCATAATCGAGATCATATCATTGTTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTA
390 TCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTA
* * *
199643 GATGAATGATAAGTCATTTAATTGAATTAAATTGCATTTTGGTGATTGTTTTTATTTTAATTGTA
455 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG-TTTTATTTTAATTGTA
* * * *
199708 AAAACTCTTTATATGGTGGCTATCAACACTATAAATAGGTACCTCCATGGCATTTCTACTAAGAA
519 AAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAA
** ** * * *
199773 CTTTTTGCATAATAAACTCTTTGAATTATTTATTTCATTTTAGTTCTTGAATTAGAACTCTTTCA
584 CTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCG
*
199838 GTTTCTTGTAGGTCTTGAAGTCTTCATCCATTTTATCTTGT
649 GTTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* * *
199879 TATAGCATTGGATCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCCATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* *
199944 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACATTCCAT-TTGTTG
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCT-TTG
* *
200008 AATTACTATCATTGTCCACGCCAACCACAAAAATCCTTCACCATTTTCCTTACATCTAATCAACC
130 AATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACC
* * *
200073 ACTATCATCACCACACTTTTTTCATTTACAATCCACTTGAACTTCATTCTATCATTTTCATTACT
195 ACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACT
* *
200138 TTCATACACATATTTAAATATACATATTTCCCTTCTTATAACATTGTTTGTACATTTTCAATCTT
260 TTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTT
* * * *
200203 GAATCAAAGCACTGTGAATTTTCTTACTAGAATCAAGACCGGGCAATCATATATATGATCTGAAA
325 AAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAA
* *
200268 CTCATAATAGAGATCATATCATTATTCATCCATTTTCGATCTACATGGGCAACCATCAAAGGGTT
389 CTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTT
* * * *
200333 AGAAGAATGACAAGTCATTTAATTGAATTAAATTTCATTTAGTTCATTGATTTATTTTAATTGTA
454 AGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTA
*
200398 AAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAA
519 AAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAA
*
200463 CTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTATTGGATTAGAACTCTATCG
584 CTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCG
* *
200528 ATTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGT
649 GTTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* *
200569 TATAGCGTTGGTTCTTAGGTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * * * *
200634 CCATCTTTAGTATATTGTTGGTTTCTAACTCAAATATAGTTAGAAGATCACAATCCATCATTTAA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * *
200699 ATTATTATCATTGTCCACGCCAACCACAAACGTCCTTCACCATTTTCCTTACATACAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* * *
200764 CTATCATCACCACACTTCTTTCCTTTAGAATCCACTTAAACTTCATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
200829 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTTCAGTCTT
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA-TTTTCAGTCTT
* *
200894 CAAA-CAAAGCACTGCGATGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTTAAA
325 -AAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAA
* *
200958 CTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGTGTA
389 CTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTT
* * * *
201023 AGAAGAATGACAATTCATTTAATTGATTTAAATTGCA-TTAAGTGATCGTTTTATTTTAATTGTA
454 AGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTA
* * * *
201087 ACAACTCTTCATATGGTGCCTATCAACACTATAAACAGGCA-CTACCGTGGCATTTGTATTAAGA
519 AAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT-CCATGGCATTTGTACTAAGA
* *
201151 ACTTTTTGCATAATAAACTCTCTGAATGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATC
583 ACTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATC
* * *
201216 GGTTTCTTGTCGGTCTTGAATTCGTCATCCATTTCATCTTGT
648 GGTTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* * * *
201258 TATAGCTTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACATTCCACCCCCTATCACTTTGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
*
201323 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAATTAGAGGGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * * * *
201388 ATTACTATCATTGCCCATGCCAACCATAAACATCCTTAACCGTTTTCCTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* *
201453 CTATTATCAACACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
* * *
201518 ACATACACATATTTAAATATACATATTTCCCTTCTTATAATGTTGTTTGTACATTTTCATTCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
* * * * * * * *
201583 AATCAGAGCACTGGGAAGTTCTTAATGGAATCAATATCGGGAAATCATACATGTGATCTGAAACT
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
* *
201648 CATAATCGAGATCATATCATTGTTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAG
391 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG
* *
201713 AAGAATGACAAGTCATTTAATTGATTTAAATTGCATTTAGGTGATTATTTTATTTTAATTGTAAA
456 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * * * * *
201778 AACTCTTCATATGGTGCATATCAACAGTATAAATAGGCACCTCCATGGAATTTGTTCAAAAAACT
521 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* *
201843 TTTTGCATAATAAAATCTTT-AAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGG
586 TTTTGCATAATAAACTCTTTGAAA-GATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGG
*
201907 TTTCTTGTAGGTCTTGAAGTCTTCATCCATTTTATCTTGT
650 TTTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* * *
201947 TATAGCGTTGGTTCCTTGCTCTACTATAGTTAGTGGGTCACGTTCCACCCTCCATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * * *
202012 CCATCTTTAGTATATTGTTGGTTTTTAACTCATATATAGTTAGAGGGTCACATTCCATTCTTTAA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* *
202077 ATTACCATCATTGTCCACGTCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* * *
202142 CTATCATCACCACAATTCTGTCATTTACAATCCACTTGAACTTCATTCTATCATTTCCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
* * *
202207 TCATACACATATTTATATATACATATTTCCCTTCTTATAATGTTGTTTGTACATTTTCAATCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
* * * * *
202272 AATAAAAGCACTGCGATGTTCTTAATAGAATCAATATCGGGCAATCATATATATGATCTGAAATT
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
* * *
202337 GATAATCGAGATAATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAG
391 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG
202402 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
456 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * *
202467 AACTCTTCATATGGTGGCTATCAACACTATAAGTAGGCACCTCCATGGCATTTCTACTAAGAACT
521 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
**
202532 TTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
586 TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
202597 TTCTTGTAGGTCTTGAACG-CTTCATCCATTTCATCTTGT
651 TTCTTGTAGGTCTTGAA-GTCTTCATCCATTTCATCTTGT
* *
202636 TATAGTGTTGGTTCCTAGCTCTACTATAGCTAGTGGGCCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * * * **
202701 CCATCTTTAGTGTATTGTTGGTTCCTAACTCATCTATAGCTAGACAGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* *
202766 ATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* * ** *
202831 CTATCATCAGCACACTTCTTTCATTTCCAATCCACTTCAACTTTTTTCTATCATTTTCATTACTT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
* *
202896 TTATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTTTTTGTACATTTTCAGTCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
*
202961 AATCAAAGCACTGC---G--------AGAATCAAGAT-TGGCAAATCATATATATGATCTGAAAC
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGC-AATCATATATATGATCTGAAAC
* * * * * * *
203014 TCATAACCAATATCATATCATTATTCAACCATTTTCAATCTACATGGGTAACCATTAGAGGG-TA
390 TCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTA
* * * * * *
203078 TGAAGAATAACAAGTCAATGAATTGAATTAAATTTCATTTAGGTGATTATTTTATTTTAGTTGTA
455 -GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTA
* * * * *
203143 AAAACTCTTCATTTGGTGCCTATCAACACTATAAATAGGCACCTCAACGACATTTGTACTATGAA
519 AAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAA
* * *
203208 CATTTTT-AATAATAAACTCTTTGAAAAATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATC
584 C-TTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATC
* * * *
203272 -GTTTCTTGTCGATCTTGAAG-CTTTCGTCCATTTCATCTTAT
648 GGTTTCTTGTAGGTCTTGAAGTC-TTCATCCATTTCATCTTGT
* * * ** *
203313 TATAGCATTGGTACCTAGCTCTACTGTAGCTAGTGGGTTGCATTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
* * *
203378 CCATCTTTAGTATATTGTTGGTTCCTAACTCATATATCGTTAGAAGGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * * * *
203443 A-TACTAACATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCGATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
*
203507 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACCT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
* * * *
203572 ACATACACATATTCAAATATACATATTTTCCTTTTTATAACGTTGTTTGTACATTTTCAGTCTTA
261 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
*
203637 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGCCAATCATATATATGATCTGAAACT
326 AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
* * *
203702 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATTAAAAGGTTAG
391 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG
* * * *
203767 AATAAAGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTAATTGTTTTATTTTAACTGTAAA
456 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * *
203832 AACTCTTCATGTGGTGCCTATTAACACTCTAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
521 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* * * * * *
203897 TTTTTCATAATAAACTCTTTGATAGATTTCTTTAATTTTAATTCTTGGATTAGAACTCTATAGGT
586 TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
* *
203962 TTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGA
651 TTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
* **
204001 TATAACGTTACTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
1 TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
204066 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
66 CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
* * **
204131 ATTTCTATCATTGTCCAAGCCAACCACAAACATCCTTCACCATTTTTGTTACATCCAATCAACCA
131 ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
* * *
204196 CTATCATCACCACACTTCTTTCATTTACTATCCATTTCAACTTCATTCTATCATTTCCATTACCT
196 CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
*
204261 ACATACACATAT
261 TCATACACATAT
204273 CTCCATGAAA
Statistics
Matches: 7057, Mismatches: 725, Indels: 126
0.89 0.09 0.02
Matches are distributed among these distances:
676 194 0.03
677 156 0.02
678 252 0.04
679 6 0.00
685 76 0.01
686 288 0.04
687 391 0.06
688 1522 0.22
689 1996 0.28
690 1388 0.20
691 167 0.02
692 4 0.00
693 1 0.00
694 2 0.00
695 116 0.02
696 6 0.00
697 127 0.02
698 1 0.00
699 364 0.05
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (689 bp):
TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATT
CCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGA
ATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA
CTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTT
TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
AATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG
AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
TTCTTGTAGGTCTTGAAGTCTTCATCCATTTCATCTTGT
Found at i:223291 original size:689 final size:690
Alignment explanation
Indices: 221976--227610 Score: 9429
Period size: 691 Copynumber: 8.2 Consensus size: 690
221966 TGTCCACGCC
221976 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
222041 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
222106 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
222171 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATAAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
* *
222236 GTTAG-AAGAATGACAAGTCATTTAATTGAATTAAATTG-TTTTAGGTGAATGTTTTATTTTAAT
261 GTT-GCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAAT
* * * * * * * *
222299 TGTAAAAATTCTTTATATGATGCCTATCAACACTATAAATAGGAACATGCACGATATTTGTACTA
325 TGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTA
* * * *
222364 AGAACTTTTTTCATAATAAACTCTTTCAATGATT-GCATTCATTTTAGTTCTTGGATTAGAACTC
390 AGAACTTCTTTCATAATAAACTCTTTAAAAGGTTCGCATTCATTTTAGTTCTTGGATTAGAACTC
* * * *
222428 TATCGGTTTCTTGTCGGTCTTGAATTCTTT-ATCCATTTCATCTT-TATATAGCTTTGGTTCCTA
455 TATCAGTTTCTTGTCGATCTTGAA-GCTTTCATCCATTTCATCTTGT-TATAGCGTTGGTTCCTA
* * * * * * * *
222491 GCTCTACAATAGCTAGTGGGTCACGTTCCAACCTCTATCACTTCGATTTCGTCTTTAGTATATTG
518 GCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTG
*
222556 TTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCA
583 TTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCA
* * * * *
222621 CGCCAACCACAAACATCATTCACCATTTTCCTTACATCCAATC
648 CGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
* * * * *
222664 AACCACCATCATCACCACACTTCTTTCTTTTACAATCCACTTCAACTTCATTCTATCGTTTCAAT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
* * *
222729 TACTTTCATATACATATTTAAATATACATATTTCCATTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
222794 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
222859 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATAAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
** *
222924 GTTAG-AAGAATGACAAGTCATTTAATTGAATTAAATTGTTTTTAGGTGAATGTTTTATTTTAAT
261 GTT-GCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAAT
* * * * * * * *
222988 TGTAAAAATTCTTTATATGATGCCTATCAACACTATAAATAGGAACATGCACGATATTTGTACTA
325 TGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTA
* * *
223053 AGAACATT-TTTCATAATAAACTCTTTCAATGATT-GCATTCATTTTAGTTCTTGGATTAGAACT
390 AGAAC-TTCTTTCATAATAAACTCTTTAAAAGGTTCGCATTCATTTTAGTTCTTGGATTAGAACT
* * * *
223116 CTATCGGTTTCTTGTCGGTCTTGAATTCTTT-ATCCATTTCATCTT-TATATAGCTTTGGTTCCT
454 CTATCAGTTTCTTGTCGATCTTGAA-GCTTTCATCCATTTCATCTTGT-TATAGCGTTGGTTCCT
** * * * * * * *
223179 AGCTTTACAATAGCTAGTGGGTCACGTTCCAACCTCTATCACTTCGATTTCGTCTTTAGTATATT
517 AGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATT
*
223244 GTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCC
582 GTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCC
* * * * *
223309 ACGCCAACCACAAACATCATTCACCATTTTCCTTACATCCAATC
647 ACGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
*
223353 AACCACCATCATCACCACACTTCTTTC--TT----T-CA-----A-TT-A--C-----TTT-C--
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
*
223394 -A--T--AT--ACATATTTAAATATACATATTTCCATTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
*
223452 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGAAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
223517 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATCAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
*
223582 GTTGCAAGAATGACAAGTCATTTAATTGAATCAAATTGCATTTAGGTGATTGTTTTATTTTAATT
261 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
223647 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
326 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
223712 GAACTTCTTTCATAATAAACTCTTTAAAAGGTTGCGCATTCATTTTAGTTCTTGGATTAGAACTC
391 GAACTTCTTTCATAATAAACTCTTTAAAAGGTT-CGCATTCATTTTAGTTCTTGGATTAGAACTC
*
223777 TATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
455 TATCAGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
223842 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
520 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
*
223907 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCAATCCTTTGAATTACTATCATTGTCCACG
585 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACG
223972 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
650 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
224013 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
224078 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
224143 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
224208 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATAAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
** *
224273 GTTAG-AAGAATGACAAGTCATTTAATTGAATTAAATTGTTTTTAGGTGAATGTTTTATTTTAAT
261 GTT-GCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAAT
* * * * * * * *
224337 TGTAAAAATTCTTTATATGATGCCTATCAACACTATAAATAGGAACATGCACGATATTTGTACTA
325 TGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTA
* * * *
224402 AGAACTTTTTTCATAATAAACTCTTTCAATGATT-GCATTCATTTTAGTTCTTGGATTAGAACTC
390 AGAACTTCTTTCATAATAAACTCTTTAAAAGGTTCGCATTCATTTTAGTTCTTGGATTAGAACTC
* * * *
224466 TATCGGTTTCTTGTCGGTCTTGAATTCTTT-ATCCATTTCATCTT-TATATAGCTTTGGTTCCTA
455 TATCAGTTTCTTGTCGATCTTGAA-GCTTTCATCCATTTCATCTTGT-TATAGCGTTGGTTCCTA
* * * * * * * *
224529 GCTCTACAATAGCTAGTGGGTCACGTTCCAACCTCTATCACTTCGATTTCGTCTTTAGTATATTG
518 GCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTG
*
224594 TTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCA
583 TTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCA
* * * * *
224659 CGCCAACCACAAACATCATTCACCATTTTCCTTACATCCAATC
648 CGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
* * * * *
224702 AACCACCATCATCACCACACTTCTTTCTTTTACAATCCACTTCAACTTCATTCTATCGTTTCAAT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
* * *
224767 TACTTTCATATACATATTTAAATATACATATTTCCATTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
*
224832 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGAAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
224897 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATCAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
* *
224962 GTTGCAAGAATGACAAGTCATTTAATTGAATCAAATTGCATTTAGGTGATTGTTTTATTTTAAAT
261 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
225027 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
326 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
225092 GAACTTCTTTCATAATAAACTCTTTAAAAGGTTGCGCATTCATTTTAGTTCTTGGATTAGAACTC
391 GAACTTCTTTCATAATAAACTCTTTAAAAGGTT-CGCATTCATTTTAGTTCTTGGATTAGAACTC
*
225157 TATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
455 TATCAGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
225222 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
520 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
*
225287 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCAATCCTTTGAATTACTATCATTGTCCACG
585 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACG
225352 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
650 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
*
225393 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCTT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
225458 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
*
225523 TCTTAAATCAAAGCACTGCGAAGTCCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
225588 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATTAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
225653 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
261 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
*
225718 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCATGACATTTGTACTAA
326 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
*
225783 GAAATTCTTTCATAATAAACTCTTTAAAAGGTTGCGCATTCATTTTAGTTCTTGGATTAGAACTC
391 GAACTTCTTTCATAATAAACTCTTTAAAAGGTT-CGCATTCATTTTAGTTCTTGGATTAGAACTC
* * *
225848 TATCAGTTTCTTGTTGATCTTGAAGCTTTAATACATTTCATCTTGTTATAGCGTTGGTTCCTAGC
455 TATCAGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
225913 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
520 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
*
225978 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACG
585 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACG
226043 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
650 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
226084 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
*
226149 TAATTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
226214 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
226279 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATCAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
* *
226344 GTTGCAAGAATGACAAGTCATTTAATTGAATCAAATTGCATTTAGGTGATTGTTTTATTTTAAAT
261 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
226409 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
326 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
226474 GAACTTCTTTCATAATAAACTCTTTAAAAGGTTGCGCATTCATTTTAGTTCTTGGATTAGAACTC
391 GAACTTCTTTCATAATAAACTCTTTAAAAGGTT-CGCATTCATTTTAGTTCTTGGATTAGAACTC
*
226539 TATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
455 TATCAGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
226604 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
520 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
*
226669 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCAATCCTTTGAATTACTATCATTGTCCACG
585 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACG
226734 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
650 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
*
226775 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCTT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
*
226840 TACTTACAAACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
*
226905 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGAAATCATATATATGATCTG
131 TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
*
226970 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATTAAAGG
196 AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
227035 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
261 GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
*
227100 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCATGACATTTGTACTAA
326 GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
*
227165 GAAATTCTTTCATAATAAACTCTTTAAAAGGTT-GCATTCATTTTAGTTCTTGGATTAGAACTCT
391 GAACTTCTTTCATAATAAACTCTTTAAAAGGTTCGCATTCATTTTAGTTCTTGGATTAGAACTCT
227229 ATCAGTTTCTTGTTC-ATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
456 ATCAGTTTCTTG-TCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGC
227293 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
520 TCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTT
*
227358 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACG
585 GATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACG
227423 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
650 CCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
227464 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
1 AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
*
227529 TAATTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
66 TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
227594 TCTTAAATCAAAGCACT
131 TCTTAAATCAAAGCACT
227611 ATCAAAGGGT
Statistics
Matches: 4714, Mismatches: 185, Indels: 95
0.94 0.04 0.02
Matches are distributed among these distances:
657 3 0.00
658 324 0.07
659 4 0.00
660 266 0.06
661 1 0.00
662 3 0.00
664 1 0.00
666 1 0.00
667 2 0.00
668 3 0.00
672 1 0.00
673 3 0.00
674 1 0.00
675 1 0.00
676 3 0.00
677 1 0.00
681 3 0.00
682 3 0.00
683 1 0.00
685 1 0.00
687 3 0.00
688 292 0.06
689 1452 0.31
690 11 0.00
691 2328 0.49
692 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (690 bp):
AACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCAT
TACTTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG
TCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATATATATGATCTG
AAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACTATAAAAGG
GTTGCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATT
GTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAA
GAACTTCTTTCATAATAAACTCTTTAAAAGGTTCGCATTCATTTTAGTTCTTGGATTAGAACTCT
ATCAGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCT
CAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTTG
ATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
CAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATT
Found at i:229281 original size:691 final size:689
Alignment explanation
Indices: 227921--230736 Score: 4381
Period size: 691 Copynumber: 4.1 Consensus size: 689
227911 ATAATGTTTC
*
227921 TTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCGGGCAATC
1 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATC
* *
227986 ATATATATGATCTGAAACTCATAATCCAGATCATATCATTATTCATCCATTTTCAATCTACATGT
66 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * *
228051 GTAACCATCAAAGGGTTATAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGGGATT
131 GCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * **
228116 GTTTTATTTTAATTGTAAAATCTCTT-AATATGTTGCCTATCAACACTATAAATAGGAACCAGCA
196 GTTTTATTTTAATTGTAAAAACTCTTCAA-ATGGTGCCTATCAACACTATAAATAGGAACCTCCA
* *
228180 CGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCT
260 CGACATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAAAAGATTGCATTCATTTTAGTTCT
* * * * * *
228245 TGGATTAGAACTCTATCGGTTTCTTATCGACCTTGAAGCTTTCGTCCATTTCATCTTATTATAGC
325 TGGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGC
* * *
228310 GTTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCT
390 GTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCT
** * *
228375 TTAGTATATTGTTGGCTCCTAACTCATATATAGTTAGAAGGTCACAATCCATCATTTGAATTACT
455 TTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCATTTGAATTACT
* * * * * * * * * *
228440 ATCATTCTCTACGCCAACCACAAATATCCTTCACCATTTT-CATTGCATTCAATCACCCATTATT
520 ATCATTGTCCACGCCAACCACAAACAACCTTCACCTTTTTGC-TTACATCCAATCAACCACTATC
* * * * * * *
228504 ATAACTACATTTTTTTCATTTACAATACACTTCAACTTCATTCTGTCA-TTTCCATTACTTTCAT
584 ATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT-AGTTTCCATTACTTACAT
** ** *
228568 ACACATATTTTTATATACATATTTCCCTTCTTATAATATTGA
648 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGT
* *
228610 TTGTACATTTTCAGTCTTCAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGAGCAATC
1 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATC
228675 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
66 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * *
228740 GCAACCATCAAAGGGTAAGAATAATGACAAGTCATTTAATTGAATCAAATTGCATTTAGGTGATT
131 GCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
*
228805 GTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCAC
196 GTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGAACCTCCAC
* *
228870 GACATTTGTACTAAGAACTCCTTTCATAATAAACTCTTTAAAAGGTTGCGCATTCATTTTAGTTC
261 GACATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAAAAGATT--GCATTCATTTTAGTTC
* *
228935 TTAGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAAGATTTCATCCATTTCATCTTGTTATAG
324 TTGGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAG
* **
229000 TGTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACAGTCCATCACTTCAATTCCATC
389 CGTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATC
229065 TTTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCA-TTGAATTA
454 TTTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCAT-CATTTGAATTA
*
229129 CTATCATTGTCCACGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATTAACCACTAT
518 CTATCATTGTCCACGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATCAACCACTAT
*
229194 CATCACCACACTTCTTTCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCATTACTTACAT
583 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATAGTTTCCATTACTTACAT
*
229259 ACACATATTTAAATATACATATTTTCCTTCTTATAACGTTGT
648 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGT
* ** *
229301 TTGTACATTTTCAGACTTAAATCAAAGCACTGTAAAGTTCTTACTAGAATCAAGATTGGGCAATC
1 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATC
* *
229366 ATATATATGATCTGAAACTCATACTCAAGATCATATCATTATTCATCCATTTTCAATCTACATGG
66 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * *
229431 GCAACCATAAAAGGGTTAGAAGAATAACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAAT
131 GCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * * * * *
229496 GTTTTATTTTAATTGTAAAAATTCTTTATATGTTGCCTATCAACACTATAAATAGGAACATGCAC
196 GTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGAACCTCCAC
* * * *
229561 AATATTTGTACTAAGAACGTT-TTTCATAATAAACTCTTTCAATGATTGCATTCATTTTAGTTCT
261 GACATTTGTACTAAGAAC-TTCTTTCATAATAAACTCTTTAAAAGATTGCATTCATTTTAGTTCT
* *
229625 TGGATTAGAACTCTATCGGTTTCTTGTCTG-TCTTGAATTCTTT-ATCCATTTCATCTTGTTATA
325 TGGATTAGAACTCTATCAGTTTCTTGT-TGATCTTGAA-GCTTTCATCCATTTCATCTTGTTATA
* * * * * *
229688 GCTTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCGT
388 GCGTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCAT
*
229753 CTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCATTTGAATTA
453 CTTTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCATTTGAATTA
* * * * *
229818 CTATCATTGTCCACGCCAACCATAAACATCCTTCA-CTATTTTCCTTACATCTAATCAACCACCA
518 CTATCATTGTCCACGCCAACCACAAACAACCTTCACCT-TTTTGCTTACATCCAATCAACCACTA
* * * *
229882 TCATCACCACACTTCTTTCTTTTACAATCCACTTCAACTTCATTCTATCGTTTTCATTACTTTCA
582 TCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATAGTTTCCATTACTTACA
* * * *
229947 TATACATATTTACATATACATATTTCCATGCTTATAACGTTGT
647 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGT
* *
229990 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGAAATC
1 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATC
* *
230055 ATATATATGATCCGAAACTCATAATCGAGATCATATCTTTATTCATCCATTTTCAATCTACATGG
66 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* *
230120 GCAACTATCAAAGGATT-GCAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
131 GCAACCATCAAAGGGTTAG-AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
** *
230184 TGTTTTATTTTAATTAAAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGCACCTCCA
195 TGTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGAACCTCCA
*
230249 CGACATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAAAAGGTTGCACATTCATTTTAGTT
260 CGACATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAAAAGATTG--CATTCATTTTAGTT
230314 CTTGGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATA
323 CTTGGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATA
230379 GCGTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCAT
388 GCGTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCAT
**
230444 CTTTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCGTTGAATTA
453 CTTTAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCATTTGAATTA
*
230509 CTATCATTGTCCACGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATTAACCACTAT
518 CTATCATTGTCCACGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATCAACCACTAT
*
230574 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATAGTTTCCATTACTCACAT
583 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATAGTTTCCATTACTTACAT
*
230639 ACACATATTTAAATATACATATTTCCCTTCTTATAATGTTGT
648 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGT
230681 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
1 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
230737 TGGGTTAGAA
Statistics
Matches: 1935, Mismatches: 174, Indels: 34
0.90 0.08 0.02
Matches are distributed among these distances:
688 7 0.00
689 899 0.46
690 14 0.01
691 1009 0.52
692 6 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.38
Consensus pattern (689 bp):
TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATC
ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
GCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
GTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGCCTATCAACACTATAAATAGGAACCTCCAC
GACATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAAAAGATTGCATTCATTTTAGTTCTT
GGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCG
TTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACGTTCCACCCTCCATCACTTCAATTCCATCTT
TAGTATATTGTTGATTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCATTTGAATTACTA
TCATTGTCCACGCCAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATCAACCACTATCAT
CACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATAGTTTCCATTACTTACATACA
CATATTTAAATATACATATTTCCCTTCTTATAACGTTGT
Found at i:229964 original size:14 final size:14
Alignment explanation
Indices: 229945--229971 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
229935 TCATTACTTT
229945 CATATACATATTTA
1 CATATACATATTTA
229959 CATATACATATTT
1 CATATACATATTT
229972 CCATGCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (14 bp):
CATATACATATTTA
Found at i:238531 original size:689 final size:689
Alignment explanation
Indices: 237004--241644 Score: 7122
Period size: 689 Copynumber: 6.7 Consensus size: 689
236994 CCATACATCA
* * * *
237004 CAACCACAAACATCATTAACCATTTTCCTTAAATCCAATCAACCACCATCATCACCACACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* * *
237069 TCTTTTACAATCCACTTCAACTTCATTCTATCGTTTCAATTACTTTCATATACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
* * *
237134 ACATATTTCCATTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACAAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
* * *
237199 CTTACTAGAATCAAGATTGGGAAATCATAAATATGATCTAAAACTCATAATCGAGATCATATCAT
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
*
237264 TATTCATCCATTTTCAATCTACATGGGCAACTATCAAAGGGTT-GCAAGAATGACAAGTCATTTA
261 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG-AAGAATGACAAGTCATTTA
* * *
237328 ATTGAATCAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGTCT
325 ATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCT
* * * *
237393 ATCAATACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTCTTTCATAATAAACTCTT
390 ATCAACACTATAAATAGGAACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTT
* * * * *
237458 TAAAAGGTTGTGCATTCATTTTAGTTATTGGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAA
455 TCAAA-GAT-TGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGAA
* * * *
237523 -GCTTTCATCCATTTCATCTTGTTATAGCGTTGGTCCCTAGCTCAACTATAGCTAGTGGGTTACG
518 TTCTTT-ATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACG
* * * *
237587 TTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTTGATTTCTAACTCATATATAGTTA
582 TTCCACCCTCTATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTA
237652 GAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
647 GAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* * * * *
237695 CAACCATAAACAACCTTCACCTTTTTGCTTACATCCAATTAACCACTATCATCACCACACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* * *
237760 TCATTTACAATCCACTTCGACTTCATTCTATAGTTTCCATTACTTACATACACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
*
237825 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCGTAAATCAAAGCACTGCGAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
237890 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
*
237955 TATTCATCCATTTTCAATCTGCATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAA
261 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAA
* * * *
238020 TTGAATTAAATTGCATTTAGGTGAATGTTTTATTTTAATTGTAAAAATTCTTTATATGTTGCCTA
326 TTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTA
* *
238085 TCAACACTATAAATAGGAACATGCACGATATTTGTACTAAGAACTTTTTTCATAATAAACTCTTT
391 TCAACACTATAAATAGGAACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTT
* * *
238150 CAATGATTGCATTCATTTTAGTTCTTGGATCAGAACTCTATCGGTTTCTTGTCGGTCTTGAATTC
456 CAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGAATTC
* *
238215 TTTATCCATTTCATCTT-TATATAGCTTTGGTTCCTAACTCTACTATAGCTAGTGGGTCACGTTC
521 TTTATCCATTTCATCTTGT-TATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTC
* *
238279 CACCCTCTATCACTTTGATTCCGTATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAG
585 CACCCTCTATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAG
* *
238344 GGTCGCAATTCATCCTTTGAATTACTATCATTGTCCACGC
650 GGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* * *
238384 CAACCACAAACATCCTTCACTATTTTCCTTACATCTAATCAACCACCATCATCACCACACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* * *
238449 TCTTTTACAATCCACATCAACTTCATTCTATCGTTTCCATTACTTTCATATACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
*
238514 ACATATTTCCATTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
*
238579 CTTACTAGAATCAAGATTGGGAAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
*
238644 TATTCATCCATTTTCAATCTACATGGGCAACTATCAAAGGGTT-GCAAGAATGACAAGTCATTTA
261 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAG-AAGAATGACAAGTCATTTA
* *
238708 ATTGAATCAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCAAATGGTGCCT
325 ATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCT
* * *
238773 ATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTCTTTCATAATAAACTCTT
390 ATCAACACTATAAATAGGAACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTT
* * * *
238838 TAAAAGGTTGCGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTTGATCTTGAA
455 TCAAAGATT--GCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGAA
* * *
238903 -GCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCAACTATAGCTAGTGGGTTACG
518 TTCTTT-ATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACG
* * * *
238967 TTCCACCCTCCATCACTTCAATTCCATCTTTAGTATATTGTTGATTTCTAACTCATATATAGTTA
582 TTCCACCCTCTATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTA
239032 GAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
647 GAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* * * *
239075 CAACCACAAACAACCTTCACCTTTTTGCTTACATCCAATTAACCACTATCATCACCACACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* **
239140 TCATTTACAATCCACTTCAACTTCATTCTATAGTTTCCATTACTCACATACACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
239205 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
*
239270 CTTACTAGAATCAAGATTGGGAAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
*
239335 TATTCATCCA-TTT---TC-A-AT---CAACCATCAAAGGGTTAGAAGAATGAAAAGTCATTTAA
261 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAA
* * * *
239391 TTGAATTAAATTGCATTTAGGTGAATGTTTTATTTTAATTGTAAAAATTCTTTATATGTTGCCTA
326 TTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTA
*
239456 TCAACACTATAAATAGGAACATGCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTT
391 TCAACACTATAAATAGGAACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTT
*
239521 CAATGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGAATTC
456 CAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGAATTC
* * *
239586 GTTATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACTATAACTAGTGGGTCACGTTCC
521 TTTATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCC
* *
239651 ACCCTCTATCACTTCGATTCCGTTTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
586 ACCCTCTATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
* *
239716 GTTAAAATCCATCCTTTGAATTACTATCATTGTCCACGC
651 GTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* *
239755 CAACCACAAACATCCTTCACCGTTTTCCTTACATCCAATCAACCACCATCATCACCACACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* *
239820 TCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATATACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
*
239885 ACATATTTCCCTTCTTTTAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
*
239950 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCCGAAACTCATAATC-ACGATCATATCA
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGA-GATCATATCA
* * *
240014 TTATTCATCCATTTTTAATCTACATGGGCAACTATCAAAGGGTTACAAGAATGACAAGTCATTTA
260 TTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTA
* * *
240079 ATTGAATTAAATTGCATTTAGGAGATTGTTTTATTTTAATTGTAAAAACTATTCATATGGTGCAT
325 ATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCT
* * * * * * ** *
240144 TTCAACACTATAAATAGGCACCTCCATGGCATTTGTAATAAGAAAATTTTGCATAATAAACTCTT
390 ATCAACACTATAAATAGGAACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTT
* * * * *
240209 TGAAAGATTGCTTTCATTTTAGTTCATGGATTAGAACTCTATC-GATTTCTTGTAGGTCTTGAAG
455 TCAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAG-TTTCTTGTCGGTCTTGAAT
* * *
240273 CCTTCATCGATTTCATCTTGTTATAGCGTTGG-TCCTAGCTCTACTATAGCTAGTGGGTCACGTT
519 TCTTTATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTT
* * *
240337 CCACCCTCTATCACTTCGATTCCATTTTTAGTATATTGTTGGTTTATAACTCAAATATAGTTAGA
584 CCACCCTCTATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGA
* *
240402 GGGTCATAATCCATCCTTTGAACTACTATCATTGTCCACGC
649 GGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* * *
240443 CAACCACAAACGTCCTTCACCATTTTCCTTACATACAATCAACCACTATCATCACCAAACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* * *
240508 TCATTTAGAATCTACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
* *
240573 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTTAATCAAAGCATTGCGAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
* * *
240638 CTTACTAGAATCCAGATCGGGCAATCATATATATGATAC--AAACTCATAATCTAGATCATATCA
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGAT-CTGAAACTCATAATCGAGATCATATCA
* * ** *
240701 TTATTCATCCATTCTCAATCTTCATGGGCAACCATCAAAGTATAAGAAGAATGACAAGTCATTTA
260 TTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTA
* ** * * * *
240766 ATTGATTTAAATTGC-TTTAATTTATCGTTTTATTTTAATTGTAAAAACTCTTCATATGGTTCCC
325 ATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCT
* *
240830 ATCAACACTATAAATAGG--CA-CCACCGTTGCATTTGTACTACGAACTTTTTTCATAATAAACT
390 ATCAACACTATAAATAGGAACATCCA-CG--ACATTTGTACTAAGAACTTTTTTCATAATAAACT
* * * * *
240892 CTCTGAATGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGGTCTTGA
452 CTTTCAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGA
* * *
240957 ATTCGTCT-TCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTATACTATAGCTAGTGTGTCAC
517 ATTC-TTTATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCAC
241021 GTTCCACCCT-TCATCACTTCGATTCCATCA-TTAGTATATTGTTGGTTTCTAACTCATATATAG
581 GTTCCACCCTCT-ATCACTTCGATTCCAT-ATTTAGTATATTGTTGGTTTCTAACTCATATATAG
* *
241084 TTAGAGGGTCATAATCCATCATTTGAATTACTATCATTGTCCACGC
644 TTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* * * **
241130 CAACCACAAATATCCTTCACCATTTTCCTTGCCTCCAATCAGTCACTATCATCACCACACTTCTT
1 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
*
241195 TCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATAT
66 TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
* * *
241260 ACATATTTCCCTTCTTATAACATTTTTTGTACATTTTCAGTCTTCAATCAAAGCACTGCGAAGTT
131 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
* * * *
241325 CTTACAAGAATCAAGAGTGGGCAATCATATATATGATCCGAAACTCATAATAGAGATCATATCAT
196 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
* *
241390 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAACGACAAGTCATGTAA
261 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAA
* * * *
241455 TTGAATTAAATTGTATTTAGGAGATTGTTTTATTATAATTGTAAAAAATCTTCATATGGTGCCTA
326 TTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTA
* * *
241520 TCAACACTATAAATAGGCACCA-CCATGGCATTTGTACTAAGAACTTTTTTCATAATAAACTCTT
391 TCAACACTATAAATAGG-AACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTT
* * *
241584 TCAAAGATTGCTTTCATTTTAGTTCTTGGTTTAGAACTCTATCAGTTTCTTGTAGGTCTTG
455 TCAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTG
241645 TGATGTAAGG
Statistics
Matches: 3608, Mismatches: 305, Indels: 76
0.90 0.08 0.02
Matches are distributed among these distances:
679 1 0.00
680 462 0.13
681 6 0.00
682 159 0.04
683 4 0.00
684 4 0.00
685 3 0.00
686 177 0.05
687 439 0.12
688 447 0.12
689 1009 0.28
690 13 0.00
691 877 0.24
692 7 0.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (689 bp):
CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
TCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATAT
ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAA
TTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTA
TCAACACTATAAATAGGAACATCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTT
CAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTCGGTCTTGAATTC
TTTATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCC
ACCCTCTATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
GTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
Found at i:241832 original size:19 final size:19
Alignment explanation
Indices: 241801--241851 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
241791 AGGGTATAAT
241801 AATATAAGTAATGAAATGA
1 AATATAAGTAATGAAATGA
241820 AATATCAAG-AATGAAATGA
1 AATAT-AAGTAATGAAATGA
*
241839 AATA-AAGAAATGA
1 AATATAAGTAATGA
241852 TAGAGATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.10
18 5 0.17
19 19 0.63
20 3 0.10
ACGTcount: A:0.61, C:0.02, G:0.16, T:0.22
Consensus pattern (19 bp):
AATATAAGTAATGAAATGA
Found at i:242795 original size:6 final size:6
Alignment explanation
Indices: 242784--242827 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
242774 CAAAAGCAAC
* * *
242784 AAAAAG AAAAAG AAAGATG AAAAAC AAAAAG AGAAAG AAAAAG A
1 AAAAAG AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG A
242828 CTCCTACATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:243072 original size:16 final size:16
Alignment explanation
Indices: 243016--243073 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
243006 GAGTTGTCAG
243016 TTATCTTCATTTTTCTTA
1 TTAT-TTCATTTTT-TTA
* *
243034 TCATTTCATTTCTTTA
1 TTATTTCATTTTTTTA
* *
243050 TTCTTTCATTTTTTTC
1 TTATTTCATTTTTTTA
243066 TTATTTCA
1 TTATTTCA
243074 CTATCTTATC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
16 22 0.67
17 8 0.24
18 3 0.09
ACGTcount: A:0.16, C:0.17, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTTCATTTTTTTA
Found at i:243088 original size:32 final size:33
Alignment explanation
Indices: 243021--243088 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 33
243011 GTCAGTTATC
* *
243021 TTCATTTTTCTTATCATTTCATTTCTTTATTCT
1 TTCATTTTTCTTATCATTTCATATCTTTATCCT
* *
243054 TTCATTTTT-TTCTTATTTCACTATC-TTATCCT
1 TTCATTTTTCTTATCATTTCA-TATCTTTATCCT
243086 TTC
1 TTC
243089 GTAACCATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.65
Consensus pattern (33 bp):
TTCATTTTTCTTATCATTTCATATCTTTATCCT
Found at i:251818 original size:688 final size:689
Alignment explanation
Indices: 248361--253698 Score: 8131
Period size: 689 Copynumber: 7.8 Consensus size: 689
248351 TAGTAATCAA
* ** * *
248361 AGGAACGAACGCTATAACAAGATGAAATGGATGAAGCCTTCAAGACCTACAAGAAATCGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
** *
248426 TTCTAATCCAAGAACTAAAATGAAAGCAATAATTCAAAGAGTTTATTATGCAAAAA-TTCTTAGA
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* *
248490 ACAAATGCCATGAAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTATACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* *
248555 AAATAAAACAATCTCCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCAAAC-CTTT
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACAC-TT
* * *
248619 TGATGGTTTCCCATGTTGATTAAAAATGGATGAATAAAGATATGATCTCGATTATGAGTTTCTGG
260 TGATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC-GG
* * * *
248684 -TCATATATATAATTGCCCGATCTTGATTCTATTAAGAACGTCGCAGTGCTTTGATTTAAGACTG
324 ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTG
* * *
248748 AAAATTTACAAATAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAGTG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* *
248813 GAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATTGT-GTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * *
248877 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATTGTAATTTAAAGAA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGA
* * *
248942 TGGATTTGTGACCCTCTAAATATATATGAGTTAGAAACCAACAATATACTAATGATGGAATCAAA
584 TGGA-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
* * *
249007 GTGATGGAGGGTGGAACGTGACCCACTAGTTATAGTATAGCT
648 GTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* * * *
249049 AGGAACCAACACTATAACAGGATGAAATGGATGACGAATTCAAGACCGACAAGAAACTGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* * * * *
249114 TGCTAGTCCAAGAACTAAAATGAAAGCAATCATTCAGAGAGTTTATTATGAAAAAAGTTCTTAGT
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * * * *
249179 ACAAATGCAACGGTGGTGCCTATTTATAATGTTGATGGGCACCATATGAAGAGTTTTTACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * * * * * * *
249244 AAATAATACGAGC-ACTTAATGCAATTTAAATCAATTAAATGACTTGTCATTCTTATTACACTTT
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* *
249308 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTT-GTAT
261 GATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
* *
249372 CATATATATGATTGCCCGATCTTGATTCTTGTAAGAACTTCGCAGTGCTTTTATTGAAGACTGAA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
*
249437 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATACGTGTATGAAAGTAATGGA
391 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* * * *
249502 AATGATAGAATGAAGTTGAAGTGGATTCTAAATTAAAGAACTGTTGTGATGATAGTGGTTGATTG
456 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
* * *
249567 GATCTAAGGAAAATGGTGAAGGACGTTTGTGGTTGGTGTGGACAATGTTAGTAATTCAAAGGATG
521 GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGATG
* ** *
249632 GATTGTGACCCTCTAACTATATTTGAGTTAGAAACTGACAATATACTAAAGATGGAATCGGAGTG
586 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
* * **
249697 ATAGATGGTGGAACGTGACCAACTAAATATAGTAGAGCT
651 ATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* * ** * * *
249736 AGGAACCAACGCAATAACAAGATAAAATGGATGAAGGCTTAAAGACCTACAAGAAACCAATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* * * *
249801 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTGAAAGAGTTTATTATGAAAAAAGTTGTTTGT
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
249866 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA-TTTTTAACAATT
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTT-ACAATT
* * *
249930 ATAATAAAACAATCTCCTAAATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTAACCCTT
195 AAAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTT
* *
249995 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCTATTATGAGTTTCGGA
260 TGATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGA
* * * * *
250060 TCATACATATGATTGCCCAATCTTGATTATAGTAAGAACATCGCAGTGCTTTGATTGAAGTCTGA
325 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGA
*
250125 AAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
390 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
** *
250190 AAACAATA-AAGTGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTGAT
455 AAATGATAGAA-TGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* **
250254 TGGATGTAAGGAACATGGTGAAGGATGTTTGTGGTTGGCATGGACAATGATAGTAATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGA
*
250319 TGGATTGT-AGCCCTCTAACTATATATGAGTTAGATACCAACAATATACTAAAGATGGAATCGAA
584 TGGATTGTGA-CCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
*
250383 GTGATAGAGGGTGGAACGTGACCCACTAGCTATTGTAGAGCT
648 GTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* * *
250425 AGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCTAGACCGACAAGAAACCGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* * * * * *
250490 TTTTAATCCAATAACTAAAATGAATGCAATCTTTTAGAGAGTTTATTATGCAAAAAGGTCTTAGT
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* *
250555 ACAAATGACATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGATTTTACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* ** * *
250620 AAATAAATCAATGACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTT
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* * * *
250685 GATGGTTGT-CCATGTAGATTAAAAATGGATTAATAATGTTATGATCTCGATTATGAGTTTTGGA
261 GATGGTT-TCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGA
* **
250749 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCATAGTGCTTTGATTGAAGACTG
325 TCATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTG
*
250814 GAAATGTACAAACAACGTTATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
*
250878 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * *
250943 TGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAAATCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGA
* * *
251008 TGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAATATACTAAAGAAGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* * *
251073 TTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGCT
649 TGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* ** *
251114 AGGAACCAACGCTATAACAAGATGAAAAGGATGAAGGCTTCAAGACCTACAAGAAACCGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* * **
251179 TTCTAATCCAAGAACTAAAATGAAAGGAATCTTTCAAATAGTTTATTATGCAAAAAGTTCCAAGT
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * *
251244 ACAAATGCCATGGAGGCGCCTGTTTATAGTGTTGATAGGCACCATATGAATAGTTTTTACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * *
251309 AAATAAAACAATCTTCTAAATGCAATTTAATTTAATTAAATGACTTGTCATTCTTCTAACCCTTT
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* *
251374 GATAGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
261 GATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
* * * * *
251439 CATATATATGATTACCCAATCTT-ATTTTAGTGAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
* ** *
251503 AATGTGCAAACAAAATTATAAGAAGGGAAATATGTATATTTAAATATGTATATGAAAGTAATGGA
391 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *
251568 AACGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
456 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
*
251633 GATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGATG
521 GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGATG
*
251698 TATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
586 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
*
251763 ATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCT
651 ATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* * * *
251802 AGGAACCAATGCTATAACAAGATGAAATGGATTACGAATTCAAGACCGACAAGAAATCGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* * * *
251867 TTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAG-
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* *
251931 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGGTAGGC-CCATATGAAGAGTTTTTACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
** * * *
251995 AAATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTT
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* * * *
252060 GATGGTTGT-CCATGTAGATTAAAAATGGATTAATAATGTTATGATCTCGATTATGAGTTTTGGA
261 GATGGTT-TCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGA
* **
252124 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCATAGTGCTTTGATTGAAGACTG
325 TCATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTG
*
252189 GAAATGTACAAACAACGTTATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
*
252253 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * *
252318 TGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAAATCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGA
* * *
252383 TGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAATATACTAAAGAAGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* * *
252448 TTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGCT
649 TGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* ** *
252489 AGGAACCAACGCTATAACAAGATGAAAAGGATGAAGGCTTCAAGACCTACAAGAAACCGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* **
252554 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAATAGTTTATTATGCAAAAAGTTCCAAGT
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * *
252619 ACAAATGCCATGGAGGCGCCTGTTTATAGTGTTGATAGGCACCATATGAATAGTTTTTACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * *
252684 AAATAAAACAATCTTCTAAATGCAATTTAATTTAATTAAATGACTTGTCATTCTTCTAACCCTTT
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* * *
252749 GATAGTTTCCCATGTACATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
261 GATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
* * * * *
252814 CATATATATGATTACCCAATCTT-ATTTTAGTGAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
* ** *
252878 AATGTGCAAACAAAATTATAAGAAGGGAAATATGTATATTTAAATATGTATATGAAAGTAATGGA
391 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *
252943 AACGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
456 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
*
253008 GATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGATG
521 GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGATG
*
253073 TATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
586 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
*
253138 ATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCT
651 ATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* * * *
253177 AGGAACCAATGCTATAACAAGATGAAATGGATTACGAATTCAAGACCGACAAGAAATCGATAGAG
1 AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
* * * *
253242 TTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAG-
66 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* *
253306 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGGTAGGC-CCATATGAAGAGTTTTTACAATTA
131 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
** * * * *
253370 AAATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTC
196 AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* * * *
253435 GATGGTTGCCCATGTAGATTGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTTGGAT
261 GATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
* *
253500 TATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGA
253565 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
390 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
* *
253630 AAATGATAGAATGAAGTTGAAGTGGATTATAAATGAAAGAAGTGTGTTGATGATAGTGGTTGATT
455 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
253695 GGAT
520 GGAT
253699 TGGTGAAGGA
Statistics
Matches: 4182, Mismatches: 443, Indels: 50
0.89 0.09 0.01
Matches are distributed among these distances:
686 321 0.08
687 988 0.24
688 1379 0.33
689 1442 0.34
690 52 0.01
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.30
Consensus pattern (689 bp):
AGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGACCGACAAGAAACCGATAGAG
TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
GATGGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGATG
GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
ATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
Found at i:254417 original size:588 final size:579
Alignment explanation
Indices: 253187--254285 Score: 1822
Period size: 588 Copynumber: 1.9 Consensus size: 579
253177 AGGAACCAAT
** * * *
253187 GCTATAACAAGATGAAATGGATTACGAATTCAAGACCGACAAGAAATCGATAGAGTTCTAATCCA
1 GCTATAACAAGATGAAATCCA-GACGAATTCAAGATCGATAAGAAATCGATAGAGTTCTAATCCA
253252 AGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAGACAAATGCCAT
65 AGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAGACAAATGCCAT
* *
253317 GGAAGTGCCTATTTATAGTGTTGGTAGGCCCATATGAAGAGTTTTTACAATTAAAATAAAACAAT
130 GGAAGTGCCTATTTATACTGTTGATAGGCCCATATGAAGAGTTTTTACAATTAAAATAAAACAAT
253382 GACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTCGATGGTTGCCCA
195 GACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTCGATGGTTGCCCA
* * ** *
253447 TGTAGATTGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTTGGATTATATATATGAT
260 TGTAAATTGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGAT
*
253512 TGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAAC
325 TGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTGGATTGAAGACTGAAAATGTACAAAC
* *
253577 AACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAAT
390 AACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGAAATGATAGAAT
* *
253642 GAAGTTGAAGTGGATTATAAATGAAAGAAGTGTGTTGATGATAGTGGTTGATTGGATTGGTGAAG
455 CAAGTTGAAGTGGATTATAAATGAAAGAAGTGTGCTGATGATAGTGGTTGATTGGATTGGTGAAG
* * * **
253707 GATGCTTGTGGATGGCATGGAGAATGATAGTATTCAAAGGAGGGATTGTATATGAGTTAGGAACC
520 GACGCTTGTGGATGACATGGACAATGATAGTATTCAAAGGAGGGATTG---ATGACCT----A-C
253772 AAA
577 AAA
**
253775 GCTATAACAAGATGAAATGGATGACGAATTCAAGATCGATAAGAAATCGATAGAGTTCTAATCCA
1 GCTATAACAAGATGAAATCCA-GACGAATTCAAGATCGATAAGAAATCGATAGAGTTCTAATCCA
*
253840 AGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTATTATGCAAAATGTTCTTAGACAAATGCCAT
65 AGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAGACAAATGCCAT
*
253905 GGAAGTGCCTATTTATACTGTTGATAGGTCCATATGAAGAGTTTTTACAATTAAAATAAAACAAT
130 GGAAGTGCCTATTTATACTGTTGATAGGCCCATATGAAGAGTTTTTACAATTAAAATAAAACAAT
*
253970 GACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTGATGGTTGCCCA
195 GACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTCGATGGTTGCCCA
*
254035 TGTAAATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGAT
260 TGTAAATTGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGAT
* *
254100 TGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTGGATTTAAGACTGAAAATGTACAAAC
325 TGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTGGATTGAAGACTGAAAATGTACAAAC
254164 AACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGAAATGATAGAAT
390 AACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGAAATGATAGAAT
*
254229 CAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTGATTGGAT
455 CAAGTTGAAGTGGATTATAAATGAAAGAAGTGTGCTGATGATAGTGGTTGATTGGAT
254286 GTAAGGAATA
Statistics
Matches: 489, Mismatches: 22, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
587 155 0.32
588 334 0.68
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (579 bp):
GCTATAACAAGATGAAATCCAGACGAATTCAAGATCGATAAGAAATCGATAGAGTTCTAATCCAA
GAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAGACAAATGCCATG
GAAGTGCCTATTTATACTGTTGATAGGCCCATATGAAGAGTTTTTACAATTAAAATAAAACAATG
ACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTCGATGGTTGCCCAT
GTAAATTGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATT
GCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTGGATTGAAGACTGAAAATGTACAAACA
ACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGAAATGATAGAATC
AAGTTGAAGTGGATTATAAATGAAAGAAGTGTGCTGATGATAGTGGTTGATTGGATTGGTGAAGG
ACGCTTGTGGATGACATGGACAATGATAGTATTCAAAGGAGGGATTGATGACCTACAAA
Found at i:257893 original size:688 final size:689
Alignment explanation
Indices: 255389--259115 Score: 5539
Period size: 689 Copynumber: 5.4 Consensus size: 689
255379 CAATAAAACA
* * *
255389 ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCCATCTTGATTCTATTAAGAACTTCGC
1 ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCGATCTTGATTCTAGTAAGAAATTCGC
* *
255454 AGTG-TTTGATTTAAGACTGAAAATGTACAAATAACGTTATAAGAAGGGAAATATGTATATTTAA
66 AGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAA
* * *
255518 ATATGTGTATGAAAGTAGTGGAAATGATACAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTG
131 ATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTG
* * *
255583 TGGTGATGATTGT-GTTGATTGGATGTAAGGAAAGTGGTGAAGGATGTTTGTGGTTGGCGTGGAC
196 TGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAC
* * * * *
255647 AATGATTGTAATTTAAAGAATGGATTTGTAACCCTCTAAATATATATGAGTTAGAAACCAACAAT
261 AATGATAGTAATTCAAAGGATGGA-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAAT
* * * *
255712 ATACTAATGATGGAATCAAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTATAGCTAGG
325 ATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGG
* *
255777 AACCAACGCTATAACAGGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAGTGC
390 AACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAGTTC
* * * *
255842 TAGTCCAAGAACTAAAACGAAAGCAATCATTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACA
455 TAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACA
* * * * *
255907 AATGCAACGGTGGTGCCTATTTATAATGTTGATGGGCACCATATGAAGAGTTTTTACAATTAAAA
520 AATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAA
* * * * *
255972 TAATACGA-G-CACTTAATGCAATTTAAATCAATTAAATGACTTGTCATTCTTATTACACTTTGA
585 TAAAACAATGAC-CTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGA
*
256035 TGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATG
649 TGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATG
* * * *
256076 ATCTCGATTATGAGTTT--GTATCATATATATGATTGCCCGATCTTTATTCTTGTAAGAACTTCG
1 ATCTCGATTATGAGTTTCAG-ATCATATATATGATTTCCCGATCTTGATTCTAGTAAGAAATTCG
*
256139 CAGTGCTTTTATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTA
65 CAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTA
* * *
256204 AATACGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAGAAAT
130 AATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGT
* * *
256269 GTTG-TGATGATAGTGGTTGATTGGATCTAAGGAAAATGGTGAAGGACGTTTGTGGTTGGTGTGG
195 G-TGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
* * **
256333 ACAATGTTAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACTGACAA
259 ACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAA
* * **
256398 TATACTAAAGATGGAATCGAAGTGATAGATGGTGGAACGTGACCAACTAAATATAGTAGAGCTAG
324 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
* * * * ** * * *
256463 GAACCAACGCAATAACAAGATAAAATGGATAAAGGCTTAAAGACCTACAAGAAACCAATAGAGTT
389 GAACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAGTT
* * *
256528 CTAATCCAAGAACTAAAATGAAAGCAATCTTTGAAAGAGTTTATTATGAAAAAAGTTCTTTGTAC
454 CTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTAC
*
256593 AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA-TTTTTATCAATTAT
519 AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTA-CAATTAA
** * * *
256657 AATAAAACAATCTCCTAAATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTAACCCTTTG
583 AATAAAACAATGACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTG
*
256722 ATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATG
648 ATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATG
* * * * *
256764 ATCTCTATTATGAGTTTCAGATCATACATATGA-TTGCAGAATCTTGATTATAGTAAGAACA-TC
1 ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCG-ATCTTGATTCTAGTAAGAA-ATTC
* *
256827 GCAGTGCTTTGATTGAAGTCTGAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTT
64 GCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTT
**
256892 AAATATGTGTATGAAAGTAATGGAAACAATA-AAGTGAAGTTGAAGTGGATTGTAAATGAAAGAA
129 AAATATGTGTATGAAAGTAATGGAAATGATAGAA-TGAAGTTGAAGTGGATTGTAAATGAAAGAA
* *
256956 GTGTGCTGATGATAGTGGTTGATTGGATGTAAGGAACATGGTGAAGGATGTTTGTGGTTGGCATG
193 GTGTGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTG
* *
257021 GGCAATGATAGTAATTCAAAGGATGGATTGT-AGCCCTCTAACTATATATGAGTTAGATACCAAC
258 GACAATGATAGTAATTCAAAGGATGGATTGTGA-CCCTCTAACTATATATGAGTTAGAAACCAAC
*
257085 AATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATTGTAGAGCT
322 AATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCT
* *
257150 AGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCTAGACCGACAAGAAACCGATAGAG
387 AGGAACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAG
* * * * * *
257215 TTTTAATCCAATAACTAAAATGAATGCAATCTTTTAGAGAGTTTATTATGCAAAAAGGTCTTAGT
452 TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * * *
257280 ACAAATGACGTGGAGGTGCCTATATATAGTGTTGATAGGCACCATATGAAGAGATTTTACAATTA
517 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* *
257345 AAATAAATCAATGACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTT
582 AAATAAAACAATGACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTT
* * *
257410 GATGGTTGTCCATGTAGATTAAAAATGGATTAATAATGTTATG
647 GATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATG
** *
257453 ATCTCGATTATGAGTTTTGGATCATATATATGATTTCCCGATCTTGATTCTAGTAAGAAAATTCA
1 ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCGATCTTGATTCTAGTAAG-AAATTCG
* *
257518 CAGTGCTTTGA-TGAAGACTGGAAATGTACAAACAACGTTATAAG-AGGGAAATATGTATATTTT
65 CAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTA
*
257581 AATATGTGTATGAATGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGT
130 AATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGT
* * *
257646 GTGCTGATGATAGTGGTTGATTGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGCCGTGGA
195 GTGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGA
* * *
257711 CAATGATAGTAAATCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAAT
260 CAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAAT
* * * *
257776 ATACTAAAGAAGGAATCGAAGTTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGCTAGG
325 ATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGG
* * ** *
257841 AACCAACGCTATAACAAGATGAAAAGGATGAAGGCTTCAAGACCTACAAGAAACCGATAGAGTTC
390 AACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAGTTC
* **
257906 TAATCCAAGAACTAAAATGAAAGCAATCTTTCAAATAGTTTATTATGCAAAAAGTTCCAAGTACA
455 TAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACA
*
257971 AATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAATAGTTTTTACAATTAAAA
520 AATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAA
*** * * * *
258036 TAAAACAATCTTCTAAATGCAATTTGATTTAATTAAATGACTTGTCATTCTTCTAACCCTTTGAT
585 TAAAACAATGACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGAT
*
258101 AGTT-TCCCATGTAGATTGAAAATGGATGAATAATGATATG
650 GGTTGT-CCATGTAGATTGAAAATGGATGAATAATGATATG
* * * * *
258141 ATCTCGATTATGAGTTTCAGATCATATATATGATTACCCAATCTTGATTTTAGTGAGAACTTCGC
1 ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCGATCTTGATTCTAGTAAGAAATTCGC
* ** *
258206 AGTGCTTTGATTTAAGACTGAAAATGTACAAACAAATTTATAAGAAGAGAAATATGTATATTTAA
66 AGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAA
* * * * *
258271 ACATGTATATGAAAGTAATGGAAACGATATAATGAAGTTGAAGTGGATTATAAATGAAAGAAGTG
131 ATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTG
* * * *
258336 TGGTGATAATAGTGGTTGATTGGATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGTGTGGAC
196 TGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAC
*
258401 AATGATAGTAATTCAAAGGATGTATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATA
261 AATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATA
*
258466 TACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGATATAGTAGAGCTAGGA
326 TACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGA
* * *
258531 ACCAAAGCTATAACAAGATGAAATGGATGACGAATTTAAGACCGACAAGAAATCGATAGAGTTCT
391 ACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAGTTCT
* * * * *
258596 AATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTA-AACAA
456 AATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAA
* *
258660 ATGCCATGGAAGTGCCTATTTATAGTGTTGATAGG-GCCATATGAAGAGTTTTTACAATTAAAAT
521 ATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAAT
* *
258724 AAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTGATG
586 AAAACAATGACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATG
* * *
258789 ATT-TCCCATGTAGATTGAAAATGGATTAAGAATGATATG
651 GTTGT-CCATGTAGATTGAAAATGGATGAATAATGATATG
** * *
258828 ATCTCGATTATGAGTTTTGGATTATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCG
1 ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCGATCTTGATTCTAGTAAG-AAATTCG
258893 CAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTA
65 CAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTA
*
258958 AATATGTGTATTAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGT
130 AATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGT
* * * *
259023 GTGCTGATGATAGTGGTTGATTGGATGTAATGAAAATGGTGAAGGATGCTTGTGGATGGCATGGA
195 GTGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGA
* *
259088 GAATGATAGT-ATTCAAAGGAGGGATTGT
260 CAATGATAGTAATTCAAAGGATGGATTGT
259116 ATATGAGTTA
Statistics
Matches: 2720, Mismatches: 296, Indels: 48
0.89 0.10 0.02
Matches are distributed among these distances:
685 1 0.00
686 50 0.02
687 607 0.22
688 1009 0.37
689 1028 0.38
690 25 0.01
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.30
Consensus pattern (689 bp):
ATCTCGATTATGAGTTTCAGATCATATATATGATTTCCCGATCTTGATTCTAGTAAGAAATTCGC
AGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAA
ATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTG
TGCTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAC
AATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATA
TACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGA
ACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAACCGATAGAGTTCT
AATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAA
ATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAAT
AAAACAATGACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATG
GTTGTCCATGTAGATTGAAAATGGATGAATAATGATATG
Found at i:259702 original size:598 final size:598
Alignment explanation
Indices: 258526--259705 Score: 2031
Period size: 598 Copynumber: 2.0 Consensus size: 598
258516 ATAGTAGAGC
*
258526 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTTAAGACCGACAAGAAATCGATAGA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAATCGATAGA
258591 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAA
66 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAA
*
258656 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGGCCATATGAAGAGTTTTTACAATTAA
131 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTCATAGGGCCATATGAAGAGTTTTTACAATTAA
*
258721 AATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
196 AATAAAACAATGACATAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
* * * * ** *
258786 ATGATTTCCCATGTAGATTGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTTGGATT
261 ACGATTGCCCATGTAAATTGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATC
*
258851 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
326 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTGGATTGAAGACTGAA
* *
258916 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATTAAAGTAATGGA
391 AATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *
258981 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTGATTG
456 AATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTAATTG
* * * *
259046 GATGTAATGAAAATGGTGAAGGATGCTTGTGGATGGCATGGAGAATGATAGTATTCAAAGGAGGG
521 GATGTAAGGAAAATGGTGAAGGACGCTTGTGGATGACATGGACAATGATAGTATTCAAAGGAGGG
259111 ATTGTATATGAGT
586 ATTGTATATGAGT
*
259124 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGATAAGAAATCGATAGA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAATCGATAGA
* *
259189 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTATTATGCAAAATGTTCTTAG
66 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAA
*
259254 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTCATAGGTCCATATGAAGAGTTTTTACAATTAA
131 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTCATAGGGCCATATGAAGAGTTTTTACAATTAA
259319 AATAAAACAATGACATAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
196 AATAAAACAATGACATAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
* * *
259384 ACGGTTGCCCATGTAAATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCATATC
261 ACGATTGCCCATGTAAATTGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATC
* *
259449 ATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTGGATTTAAGACTGAA
326 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTGGATTGAAGACTGAA
259513 AATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
391 AATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *
259578 AATGATAGAATCAAGTTTAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTAATTG
456 AATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTAATTG
* * *
259643 GATGTAAGGAAAATTGTGAAGGACGTTTGTGG-TCGACGTGGACAATGATAGTAATTCAAAGGA
521 GATGTAAGGAAAATGGTGAAGGACGCTTGTGGAT-GACATGGACAATGATAGT-ATTCAAAGGA
259706 TGGTTGTGAC
Statistics
Matches: 547, Mismatches: 33, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
596 1 0.00
597 194 0.35
598 352 0.64
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (598 bp):
TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGACAAGAAATCGATAGA
GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTACTATGCAAAATGTTCTTAA
ACAAATGCCATGGAAGTGCCTATTTATAGTGTTCATAGGGCCATATGAAGAGTTTTTACAATTAA
AATAAAACAATGACATAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
ACGATTGCCCATGTAAATTGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATC
ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTGGATTGAAGACTGAA
AATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTAATTG
GATGTAAGGAAAATGGTGAAGGACGCTTGTGGATGACATGGACAATGATAGTATTCAAAGGAGGG
ATTGTATATGAGT
Found at i:263464 original size:348 final size:348
Alignment explanation
Indices: 262821--263487 Score: 1226
Period size: 348 Copynumber: 1.9 Consensus size: 348
262811 CGTTGTGTTC
262821 TGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTG
1 TGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTG
*
262886 TATGAAAGTAATGAAAATGATAGAATAAAGTTGACGTGGATTGTAAATAAAAGAAGTGTGCTGAT
66 TATGAAAGTAATGAAAATGATAGAATAAAGTTGACATGGATTGTAAATAAAAGAAGTGTGCTGAT
*
262951 GATAGTGGTTGATTGGATGTAATGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATA
131 GATAGTGGTTGATTGGATGTAACGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATA
263016 GTAATTCAAATGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAACATACTAAA
196 GTAATTCAAATGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAACATACTAAA
* *
263081 GATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAACTATAGCAGAGGTAGGAATCAAAG
261 GATGGAATCAAAGTGATAGAGGGTGGAACGTGACCCACTAACTATAGCAGAGCTAGGAATCAAAG
263146 GGTTAGAAGAATGACAAGTTCTT
326 GGTTAGAAGAATGACAAGTTCTT
* * *
263169 TGATTTAAGACTGGAAATTTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTG
1 TGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTG
* * *
263234 TATGAAAGTAGTGAAAATGATAGAATGAAGTTGACATGGATTGTAAATGAAAGAAGTGTGCTGAT
66 TATGAAAGTAATGAAAATGATAGAATAAAGTTGACATGGATTGTAAATAAAAGAAGTGTGCTGAT
263299 GATAGTGGTTGATTGGATGTAACGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATA
131 GATAGTGGTTGATTGGATGTAACGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATA
263364 GTAATTCAAATGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAACATACTAAA
196 GTAATTCAAATGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAACATACTAAA
* *
263429 GATGGAATCAAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAA
261 GATGGAATCAAAGTGATAGAGGGTGGAACGTGACCCACTAACTATAGCAGAGCTAGGAA
263488 CAACCGCTAT
Statistics
Matches: 307, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
348 307 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (348 bp):
TGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTG
TATGAAAGTAATGAAAATGATAGAATAAAGTTGACATGGATTGTAAATAAAAGAAGTGTGCTGAT
GATAGTGGTTGATTGGATGTAACGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATA
GTAATTCAAATGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAACATACTAAA
GATGGAATCAAAGTGATAGAGGGTGGAACGTGACCCACTAACTATAGCAGAGCTAGGAATCAAAG
GGTTAGAAGAATGACAAGTTCTT
Found at i:264484 original size:689 final size:688
Alignment explanation
Indices: 263166--265999 Score: 4121
Period size: 689 Copynumber: 4.1 Consensus size: 688
263156 ATGACAAGTT
* *
263166 CTTTGATTTAAGACTGGAAATTTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
1 CTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
* * *
263231 GTGTATGAAAGTAGTGAAAATGATAGAATGAAGTTGACA-TGGATTGTAAATGAAAGAAGTGTGC
66 GTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGA-AGTGGATTGTAAATGAAAGAAGTGTGG
* * * *
263295 TGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAAT
130 TGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAAT
* *** * *
263360 GATAGTAATTCAAATGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAACATAC
195 GATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATAC
*
263425 TAAAGATGGAATCAAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAA-C
260 TAAAGATGGAATCAAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACC
* * * *
263489 AACCGCTATAACAAGATGAAATGGATGAAGCCTTCAAGACCTACAAGAAACCTATAGAGTTCAAA
325 AA-CGCTATAACAAGATGAAATGGATGAA-ACTTCAAGACCGACAAGAAACCGATAGAGTTCTAA
* ** *
263554 TCCAAGAACTAAAATGAAAGAAATAATTCAAAGAGTTTATTATACAAAAAGTTCTTAGTACAAAT
388 TCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAAT
*
263619 GCCATGGAGGTG-CATATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
453 GCCATGGAGGTGTC-TATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACAATTAAAATA
* *
263683 AAACAATCTCCTAAATAGAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCATTTGATGG
517 AAACAATCACCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCATTTGATGG
* * * *
263748 ATGCCCATGAAGATTGAAAATGGATGAATAATGACATAATCTCGATTATGAGTTTCAGATCATAT
582 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATAT
*
263813 ATATGATTGCCCGATCTTGATTCTATTAAGAACTTCGCAGTG
647 ATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTG
*
263855 CTTTGATTTAAGACTGAAAATGTACAAACACCGTTATAAGAAGGGAAATATGTATATTTAAATAT
1 CTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
* * * *
263920 GTTTATGAAAGTAATGGAAATGATAGAATGTAGTTGAAGTGGATTATAAATGAAAGAAGTATGGT
66 GTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGT
* *
263985 GATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAAGGATGTTTGTGGTTGGCGTGGACAATG
131 GATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATG
*
264050 ATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATATT
196 ATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACT
* * * * *
264115 AAAGATGGAATCAAAGTGATAGAGTGTGGAACGTGACTCACTAGTTATTGTAGAGCTAGGAACCA
261 AAAGATGGAATCAAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCA
* * * * * *
264180 AAGCTATAACATGATGAAATGGATGGCGAA-TACAAGACCGACAAGAAACCAATAGATTTCTAAT
326 ACGCTATAACAAGATGAAATGGAT-G-AAACTTCAAGACCGACAAGAAACCGATAGAGTTCTAAT
* * *
264244 CCAAGAATTAAAATGAAAGCAATCTTTCAGAGATTTTATTATGCAAAAAGTTCTTAGTACAAATG
389 CCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATG
*
264309 CCATGGAGGTGTCTATTTATAGTGTTGATAGGAACCATATGATGAGTTTTTACAATTAAAATAAA
454 CCATGGAGGTGTCTATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACAATTAAAATAAA
* ** * *
264374 ACAATGACCTATGTGA-AATTTAATTCAATTAAATAACTTGTCATTCTTCTTA-CACTTTGATGG
519 ACAATCACCTAAAT-ACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCA-TTTGATGG
* * **
264437 TTGCCCATGTAGATTGAAAATGGATTAATAATGATATGATATCGATTATGAGTTTTGGATCATAT
582 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATAT
* *
264502 ATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCACAGTG
647 ATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTG
*
264545 CTTTGATTAAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
1 CTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
* * *
264610 GTGTACGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTGAATAAAAGAAGTGTGGT
66 GTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGT
* * * * *
264675 GATGGTAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGTTGGCATGGAGAATA
131 GATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATG
* * * *
264740 ATAGT-ATTCAAAGGATGGATTGTGACCCTATAACTATATATTAGTTTGGAACCAACAATATACT
196 ATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACT
* * *
264804 AAAGATGGAATCGATGTGATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCA
261 AAAGATGGAATCAAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCA
* * * * * * *
264869 ACTCTATAATAAGATGAAATGGATGAAAGCTTTAAGATCGATATGAAACTGATAGAGTTCTAATC
326 ACGCTATAACAAGATGAAATGGATGAAA-CTTCAAGACCGACAAGAAACCGATAGAGTTCTAATC
* * * *
264934 CAAGAACTAAAATGAATGCAATCTTTCGAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAATGT
390 CAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGC
* * * * * *
264999 CGTGCATGT-TCCTATTTATAGTGTTTATAGGTAA-CATATGAAGTGTTTTTACCATTAAAATAA
455 CATGGAGGTGT-CTATTTATAGTGTTGATAGG-AACCATATGAAGAGTTTTTACAATTAAAATAA
* * *
265062 AACAATCAGCTAAATACAATTTAATTCAATTAAATGACTTGTCATTATTCTAACCCTTTGATGGT
518 AACAATCACCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCATTTGATGGT
*
265127 TTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATA
583 TGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATA
* *
265192 TATGATTGCCCGATCTCGATTATAGTAAGAACTTCGCAGTG
648 TATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTG
*
265233 CTTTGATTTAAGACTGAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATAT
1 CTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
*
265298 GTGTATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGT
66 GTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGT
* * *
265363 GATGATTGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATG
131 GATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATG
*
265428 ATAGTTATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACT
196 ATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACT
*
265493 AAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCA
261 AAAGATGGAATCAAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCA
*
265558 ACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATC
326 ACGCTATAACAAGATGAAATGGATGAAA-CTTCAAGACCGACAAGAAACCGATAGAGTTCTAATC
* * * *
265623 CAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATG-AATGAAGTTCTTAGTACAAATT
390 CAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAA-AAAGTTCTTAGTACAAATG
* * * * * * *
265687 TCGTGGAGGTGCCTATTTATTGTGTTGATAGGCACCATATCAAGAGTTTTTACAATTAAAATAAG
454 CCATGGAGGTGTCTATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACAATTAAAATAAA
* * * * *
265752 ACAATCACGTAAATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCATTTAATGGTT
519 ACAATCACCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCATTTGATGGTT
* *
265817 GCCCATGTAGATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCAGATCATATA
584 GCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCAGATCATATA
*
265881 TATGATTTG-CCGATC----TTC-A-T----TC-TCGCAGTG
648 TATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTG
* * * *
265911 CTCTGATTGAAGACTGAAAATGTACAAACGACGTTTTAAGAAGGGAAATATGTATATTTAAATAT
1 CTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
* *
265976 GTGTATGAAAGTAACGAAAATGAT
66 GTGTATGAAAGTAATGGAAATGAT
266000 GAAGGATGTT
Statistics
Matches: 1931, Mismatches: 194, Indels: 51
0.89 0.09 0.02
Matches are distributed among these distances:
678 90 0.05
679 1 0.00
683 1 0.00
684 1 0.00
685 2 0.00
687 2 0.00
688 205 0.11
689 1420 0.74
690 208 0.11
691 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
CTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATAT
GTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGT
GATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATG
ATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACT
AAAGATGGAATCAAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCA
ACGCTATAACAAGATGAAATGGATGAAACTTCAAGACCGACAAGAAACCGATAGAGTTCTAATCC
AAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGCC
ATGGAGGTGTCTATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACAATTAAAATAAAAC
AATCACCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCATTTGATGGTTGC
CCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATAT
GATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTG
Found at i:268230 original size:689 final size:688
Alignment explanation
Indices: 265986--271879 Score: 8483
Period size: 689 Copynumber: 8.6 Consensus size: 688
265976 GTGTATGAAA
* *
265986 GTAACGAAAATGATGAAGGATGTTTGTGGTTGGCGTGCAGAATGATAGTAATTCAAAGGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
*** * *
266051 TGTGAATGTCTAACTATATATGCGTTAGGAACCAACAATATACTAAAGATGGAATCGATGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* *
266116 GAGGGTGGAACGTGA-CCACTAGCTATAGTAGAGCTAGGAACCAATGCTATAACAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
* ** * ** * * *
266180 GACGAATCCTTCAAGACCTTCAAGAAACCAATAGAGTTCTAATCCAAGAACTAAAATGAAAGAAA
196 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
** *
266245 TAATTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGCCTATTTATAG
261 TCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGGTG-CTATTTATAG
* * * *
266310 TGTTGATAGGAACCATATGAAGAGTTTTTACAATTAGAATAAAACAATCTCCTAAACACAATTTA
325 TGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTA
* *
266375 ATTCAATTAAATGACTTGTCATTCTTCTAACCTTTTGATGGTTGCCCATGAAGATTGAAAATGGA
390 ATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGA
* * * * ** *
266440 TGAATAATGATATGATATCGATTATGAGTTTCAGATCATATATAAGATTGTCTGAAATTGATTCA
455 TGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCT
* * * * *
266505 ATTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACATTATAAGAAGGGTA
520 AGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAA
* * * * *
266570 ATATGTATATTTAAATATCTGTTTGTAGGTAA-GGCAAATGATAGAATGAAGTTGAAGTGGACTG
585 ATATGTATATTTAAATATGTGTATGAAAGTAATGG-AAATGATAGAATGAAGTTGAAGTGGATTG
* *
266634 TAAAAGAAAGAAGTGTTGTGATGATAGTGGTTGATTGGAT
649 TAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
* *
266674 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCATGGAGAATGATAGT-ATTCAACGGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* * * * *
266738 TGTGACCTTCTAACTATATATGAGTTAGGAACCAATAATATACAAAAGATGGAATTGAAATGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* *
266803 GAGGGTGGAACGTAACCCACTAGCTATAGTAAAGCTAGGAACCAATGCTATAACAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
266868 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
196 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
* * * * *
266933 TTTTTC-AAGAAGTTTATTATGAAAAAAATTCTTAATAAAAATGTCATGGAGGTGCCTATTTATA
261 TCTTTCAAAG-AGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGGTG-CTATTTATA
* * *
266997 GTGTTGATAGGCACCACATGAAGAGTTTTTACAATTAAAATAAAATAATCACCTAAATGCAATTT
324 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTT
* * * * *
267062 AATTAAATTCAATGACTTGTCATTATTCTTACCCTTTAATGGTTGCCCATGTAGATTGAAAATGG
389 AATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGG
* * *
267127 ATGAATATTTG-TATGATCTCGGTTATGAGTTTCAGATCATATACATGATTTG-CCGATCTTG--
454 ATGAATA-ATGATATGATCTCGATTATGAGTTTCAGATCATATATATGA-TTGCCCGATCTTGAT
** *
267188 ---A-T----AC-TCGTTGTGCTCTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGG
517 TCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGG
* * * *
267244 GAAATATGTATAATTAAATATGTGTATGAAAGTAATGAAAATGATAGAATAAAGTTGACGTGGAT
582 GAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGAT
*
267309 TGTAAATGAAAGAAGTGTGTTGATGATAGTGGTTGATTGGAT
647 TGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
* * * *
267351 GTAACGAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATAGTAATTCAAATGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
*** * * *
267416 TGTGAATGTCTAACTGTATATGAGTTAGGAACCAACAATATACTAAAGCTGGAATTGAAGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* * * *
267481 GAGGGTGGAAAGTGACCCACTAGCTATAGTAGAGCTAGTAACCAACGCTATAAAAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
* * * *
267546 GATG-AAGCCTTCAAGACCTACAAGAAACCGATAGAGTTCTAATCCAATAACTAAAATGAAAGCA
196 GATGAAAG-CTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCA
** * * *
267610 ATAATTCAAAGAGTTTATTATGCAAAATGTTCTTAGTACATATGCCATGGAGGTGCATATTTATA
260 ATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGGTGC-TATTTATA
* *
267675 GTGTTGATAGGCACCATATGAAGAGTTTTCACAATTAAAATAAAACAATCTCCTAAATACAATTT
324 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTT
* * *
267740 AATTCAATTAAATGACTTGTCATTCTTCTAACCATTTGATGGATGCCCATGAAGATTGAAAATGG
389 AATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGG
*
267805 ATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGTCCGATCTTGATTC
454 ATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTC
* * *
267870 TATTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACTTTATAAGAAGGGA
519 TAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGA
* * * *
267935 AATATGTATATTTAAATATATTTATGAAAGTAATGGAAACGATAGAATGTAGTTGAAGTGGATTG
584 AATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTG
* *
268000 TAAATGAAAGAAGTATGGTGATGATGGTGGTTGATTGGAT
649 TAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
* * * * * * *
268040 GTAAGGAAAATGATGACGGATATTTGTGGTTGGCGTGGACAACGATAGTAATTCAAAGGATTGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* ** *
268105 TATGACCCTCTAACTATATATGAGTTAAAAACCAACAATATACTAAAGATGGAATCAAAGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* * * * * *
268170 GAGTGTGGAACGTGACTCACTAGTTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
* * * *
268235 GATGACGAA--TTCAAGACCGACAAGAAACCGATAGAATTCTAATCCAAGAATTAAAATGAAAGC
196 GATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGC
* * * *
268298 AATCTTTCAGAGAGTTTATTATGCAAAAAGTTCTTATTAGAAATGCCATGGAGGTGTCTATTTAT
259 AATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGGTG-CTATTTAT
* * * **
268363 AGTGTTGATGGGAACCATATGATGAGTTTTTACAATTAAAATAAAACAATCACCTATGTGA-AAT
323 AGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAAT-ACAAT
* * *
268427 TTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTGATGGTTGCCCATGTAGATTGAAAAT
387 TTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAAT
* * **
268492 GGATTAATAATGATATGATCTAGATTATGAGTTTTGGATCATATATATGATTGCCCGATCTTGAT
452 GGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGAT
* * *
268557 TCTAGTAAGAAAATTCACAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAT
517 TCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAG
268622 GGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGA
581 GGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGA
*
268687 TTGTAAATGAAAGATGTGTGGTGATGATAGTGGTTGATTGGAT
646 TTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
* * * * * * *
268730 GTAAGGAAAATGATGACGGATATTTGTGGTTGGCGTGGACAACGATAGTAATTCAAAGGATTGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* ** * *
268795 TATGACCCTCTAACTATATATGAGTTAAAAACCAACGATATACTAAAGATGGAATCAAAGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* * * * * *
268860 GAGTGTGGAACGTGACTCACTAGTTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
* * * *
268925 GATGACGAA--TTCAAGACCGACAAGAAACCGATAGATTTCTAATCCAAGAATTAAAATGAAAGC
196 GATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGC
* * * * *
268988 AATCTTTCAGAGAGTTTATTATACAAAAAGTTCTTATTAGAAATGCCATGGAGGTGTCTATTTAT
259 AATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGGTG-CTATTTAT
* * * **
269053 AGTGTTGATGGGAACCATATGATGAGTTTTTACAATTAAAATAAAACAATCACCTATGTGA-AAT
323 AGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAAT-ACAAT
* * *
269117 TTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTGATGGTTGCCCATGTAGATTGAAAAT
387 TTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAAT
* * **
269182 GGATTAATAATGATATGATCTAGATTATGAGTTTTGGATCATATATATGATTGCCCGATCTTGAT
452 GGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGAT
* * *
269247 TCTAGTAAGAAAATTCACAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAT
517 TCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAG
269312 GGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGA
581 GGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGA
* *
269377 TTGTAAATGAAAGATGTGTGGTGATGGTAGTGGTTGATTGGAT
646 TTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
**
269420 GTAACGAAAATGGTGAAGGATGTTTGTGGTTTACGTGGAGAATGATAGT-ATTCAAAGGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* * *
269484 TGTGACCCTCTAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGGAATCGATGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* * *
269549 GAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACTCTATAATAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
* *
269614 GATGAAAGCTTTAAGATCGA-AATGAAACCGATAGAGTTCTAATACAAGAACTAAAATGAATGCA
196 GATGAAAGCTTCAAGATCGACAA-GAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCA
* * * * *
269678 ATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTTCTATTTATA
260 ATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGG-TGCTATTTATA
* * * * * **
269743 GTGTTTATAGGCAACAAATGAAGTGTTTTTACCATTAAAATAAAACAATCAGTTAAATACAATTT
324 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTT
* *
269808 AATTCAATTAAATGGCTTGTCATTCTTCTAACCCTTAGATGGTTGCCCATGTAGATTGAAAATGG
389 AATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGG
269873 ATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTC
454 ATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTC
* *
269938 TAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACATTATAAGAAGGGA
519 TAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGA
* *
270003 AATATGTATATTTAAATATATGTATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTG
584 AATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTG
* * *
270068 TAAATGAAAGAAGTATGGTGATGGTTGTGGTTGATTGGAT
649 TAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
* * * *
270108 GTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* *
270173 TGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGAAGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
270238 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
270303 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
196 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
* * * *
270368 TCTTTTAAAGAGTTTATTATG-AATGAAGTTCTTTGTACAAATGTCGTGGAGGTGCCTATTTATA
261 TCTTTCAAAGAGTTTATTATGCAA-AAAGTTCTTAGTACAAATGTCATGGAGGTG-CTATTTATA
* *
270432 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAACACAATCACTTAAAT-CTAATT
324 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATAC-AATT
* * * *
270496 TAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTAATTGTTGCCCATGTAGATTGAAAATG
388 TAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATG
* * *
270561 GATGAATATTTG-TATGATCTCGGTTATGAGTTTCGGATCATATATATGATTTG-CCGATCTTGA
453 GATGAATA-ATGATATGATCTCGATTATGAGTTTCAGATCATATATATGA-TTGCCCGATCTTGA
* *
270624 ---T--T-----C-TCGCAGTGCTCTGATGGAAGACTGAAAATGTACAAACAACGTTATAAGAAG
516 TTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAG
* *
270678 GGAAATATGTATATATAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGTAGTGGA
581 GGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGA
* *
270743 TTGTAAATGAAAGATGTGTGGTGATGGTAGTGGTTGATTGGAT
646 TTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
**
270786 GTAACGAAAATGGTGAAGGATGTTTGTGGTTTACGTGGAGAATGATAGT-ATTCAAAGGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* * *
270850 TGTGACCCTCTAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGGAATCGATGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
* * *
270915 GAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACTCTATAATAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
* *
270980 GATGAAAGCTTTAAGATCGA-AATGAAACCGATAGAGTTCTAATACAAGAACTAAAATGAATGCA
196 GATGAAAGCTTCAAGATCGACAA-GAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCA
* * * * *
271044 ATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTTCTATTTATA
260 ATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGG-TGCTATTTATA
* * * * * **
271109 GTGTTTATAGGCAACAAATGAAGTGTTTTTACCATTAAAATAAAACAATCAGTTAAATACAATTT
324 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTT
* *
271174 AATTCAATTAAATGGCTTGTCATTCTTCTAACCCTTAGATGGTTGCCCATGTAGATTGAAAATGG
389 AATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGG
271239 ATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTC
454 ATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTC
* *
271304 TAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACATTATAAGAAGGGA
519 TAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGA
* *
271369 AATATGTATATTTAAATATATGTATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTG
584 AATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTG
* * *
271434 TAAATGAAAGAAGTATGGTGATGGTTGTGGTTGATTGGAT
649 TAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
* * * *
271474 GTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGATGGAT
1 GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
* *
271539 TGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGAAGTGATA
66 TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
271604 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
131 GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
271669 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
196 GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
* * * *
271734 TCTTTTAAAGAGTTTATTATG-AATGAAGTTCTTTGTACAAATGTCGTGGAGGTGCCTATTTATA
261 TCTTTCAAAGAGTTTATTATGCAA-AAAGTTCTTAGTACAAATGTCATGGAGGTG-CTATTTATA
* * **
271798 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAACACAATCACTTAAATGTAATTT
324 GTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTT
*
271863 AATTCAATTCAATGACT
389 AATTCAATTAAATGACT
271880 AAAATGAAAT
Statistics
Matches: 4733, Mismatches: 412, Indels: 121
0.90 0.08 0.02
Matches are distributed among these distances:
676 7 0.00
677 609 0.13
678 602 0.13
679 4 0.00
680 1 0.00
682 2 0.00
683 2 0.00
684 2 0.00
686 1 0.00
687 90 0.02
688 766 0.16
689 1755 0.37
690 890 0.19
692 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
GTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGATGGAT
TGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGAAGTGATA
GAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATG
GATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAA
TCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGTCATGGAGGTGCTATTTATAGT
GTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAA
TTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGAT
GAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTA
GTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAA
TATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTA
AATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGAT
Found at i:272822 original size:954 final size:955
Alignment explanation
Indices: 270950--272833 Score: 3272
Period size: 954 Copynumber: 2.0 Consensus size: 955
270940 ATAGTAGAGC
* *
270950 TAGGAACCAACTCTATAATAAGATGAAATGGATGAAAGCTTTAAGATCGAAATGAAACCGATAGA
1 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGAAATGAAACCGATAGA
271015 GTTCTAATACAAGAACTAAAATGAATGCAATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTAG
66 GTTCTAATACAAGAACTAAAATGAATGCAATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTAG
* * * *
271080 TACAAATGTCGTGCAGGTTTCTATTTATAGTGTTTATAGGCAACAAATGAAGTGTTTTTACCATT
131 TACAAATGTCGTGCAGGTTCCTATTTATAGTGTTGATAGGCAACAAATGAAGTGTCTTTACAATT
** *
271145 AAAATAAAACAATCAGTTAAATACAATTTAATTCAATTAAATGGCTTGTCATTCTTCTAACCCTT
196 AAAATAAAACAATCACCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTT
271210 AGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
261 AGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
271275 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
326 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
271340 AAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATGG
391 AAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATGG
* **
271405 AAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGGTTGTGGTTGATT
456 AAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGATAATGGTTGATT
* * *
271470 GGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGAT
521 GGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGGAC
* *
271535 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGAAGT
586 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCAAAGT
271600 GATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGA
651 GATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGA
271665 AATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAAT
716 AATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAAT
* * *
271730 GCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTGTACAAATGTCGTGGAGGTGCCTATTT
781 GCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTACAAATATCGTGGAGGTGCCTATTT
* * * * * *
271795 ATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAACACAATCACTTAAATGTAA
846 ATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAATTAAAATAAAACAATAACCTAAATGCAA
*
271860 TTTAATTCAATTCAATGACTAAAATGAAATGGATTGTATATGAGT
911 TATAATTCAATTCAATGACTAAAATGAAATGGATTGTATATGAGT
271905 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAA-GAAACCGATAG
1 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGA-AATGAAACCGATAG
* * * *
271969 AGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAATTTCTTA
65 AGTTCTAATACAAGAACTAAAATGAATGCAATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTA
* * *
272034 GTACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACAAT
130 GTACAAATGTCGTGCAGGTTCCTATTTATAGTGTTGATAGGCAACAAATGAAGTGTCTTTACAAT
* *
272099 TAAAATAAAA-AATCACCTAATTGCAATTTAATTCAATTAAATGACTT-TCCATTCTTCTAACCC
195 TAAAATAAAACAATCACCTAAATACAATTTAATTCAATTAAATGACTTGT-CATTCTTCTAACCC
*
272162 TTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCA
259 TTAGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCA
*
272227 GATCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
324 GATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
* * *
272292 GAAAATGTACAAACAAGATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGTAAT
389 GAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAAT
* *
272357 GGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGA
454 GGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGATAATGGTTGA
*
272422 TTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGG
519 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGG
*
272487 ACGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATTAAA
584 ACGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCAAA
*
272551 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACTAACGCTATAACAAGAT
649 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGAT
* *
272616 GAAATGGATGAAAGCTTCAAGATCGATAAGAAACCGATAGATTTTCTAATCCAAGAACTAAAATG
714 GAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA-GTTCTAATCCAAGAACTAAAATG
272681 AATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTACAAATATCGTGGAGGTGCCTA
778 AATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTACAAATATCGTGGAGGTGCCTA
272746 TTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAATTAAAATAAAACAATAACCTAAATG
843 TTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAATTAAAATAAAACAATAACCTAAATG
*
272811 CAGTATAATTCAATTCAATGACT
908 CAATATAATTCAATTCAATGACT
272834 TGTCATTCTT
Statistics
Matches: 877, Mismatches: 49, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
953 162 0.18
954 525 0.60
955 188 0.21
956 2 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (955 bp):
TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGAAATGAAACCGATAGA
GTTCTAATACAAGAACTAAAATGAATGCAATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTAG
TACAAATGTCGTGCAGGTTCCTATTTATAGTGTTGATAGGCAACAAATGAAGTGTCTTTACAATT
AAAATAAAACAATCACCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTT
AGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
AAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATGG
AAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGATAATGGTTGATT
GGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGGAC
GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCAAAGT
GATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGA
AATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAAT
GCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTACAAATATCGTGGAGGTGCCTATTT
ATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAATTAAAATAAAACAATAACCTAAATGCAA
TATAATTCAATTCAATGACTAAAATGAAATGGATTGTATATGAGT
Found at i:273354 original size:689 final size:688
Alignment explanation
Indices: 271905--275238 Score: 5071
Period size: 689 Copynumber: 4.9 Consensus size: 688
271895 GTATATGAGT
*
271905 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
*
271970 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAATTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGA-AAAAGTTCTTAG
* * * * * *
272035 TACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* *
272100 AAAATAAAA-AATCACCTAATTGCAATTTAATTCAATTAAATGACTT-TCCATTCTTCTAACCCT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGT-CATTCTTCTTACCCT
*
272163 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGG
272228 ATCATATATATGATT-GCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
324 ATCATATATATGATTGGC-CGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
*
272292 GAAAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGTAA
388 GAAAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAA
* * *
272356 TGGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTG
452 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
* *
272421 ATTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAG
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAG
* **
272486 GACGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATTAA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
272550 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
272592 TAGGAACTAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* *
272657 TTTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTA
66 -GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAA-AAGTTCTTA
* * *
272722 GTACAAATATCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAAT
129 GTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * * *
272787 TAAAATAAAACAATAACCTAAATGCAGTATAATTCAATTCAATGACTTGTCATTCTTCTTACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
* *
272852 TTGATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATGGTCTCGATTATGAGTTTCGG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGG
* * * * *
272917 ATCATATATATGATTGGCCGATCTTGATTCTAGAAAGAACTTCACAATGCTTTGATTTAACACTA
324 ATCATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* *
272982 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGTAGGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* *
273047 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGATTGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* *
273112 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGT
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
*
273177 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
273242 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
*
273282 TAGGAACCAACGCTATAACGAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * *
273347 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
273412 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
273477 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * *
273542 TAATTGTTGCCCATGTAGATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCGG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCGG
* * **
273606 ATCATATATATGATTTGCCGATCTTGA---T--T-----C-TCGCAGTGCTCTGATGGAAGACTG
324 ATCATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
*
273660 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATATAAATATGTGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * *
273725 GAAATGATAGAATGAAGTTGTAGTGGATTGTAAATGAAAGAAGTGTGCTAATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * * *
273790 TGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGGCGTGGACAGTGATAGTAAATCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* *
273855 TGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAATATACTAAAGATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* *
273920 TTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
273960 TAGTAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGACCTACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * **
274025 GTTCTAATCCAAGAACTAAAATGAAAGCAATATTTGAAAGAGTTTATTATGCAAAAAGTTCCAAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAG
* * *
274090 TACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAATAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
** * *
274155 AAAATAAAACAATCTTCTAAATGCAATTTAATTGAATTAAATGACTTGTCATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * *
274220 TGATAGTTTCCCATGTAGATTAAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGA
** *
274285 TCATATATATGATTACCCAATCTTGATAT-TAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
325 TCATATATATGATTGGCCGATCTTGAT-TCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* ** * *
274349 AAAATGTACAAAGAAAATTATAAGAAGAGAAATATGTATATTTAAATATGTATATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* *
274414 GAAACGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * * *
274479 TGGATGTAAGGAAAATGCTAAAGGATGTTTGTGGTTGGCGTGGACAACGATAGTAATTCAAAGGT
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* * *
274544 TGTATTGTGACTCTCTAACTATATATGAGTTAGAAACCAGCAATATACTAAAGATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* *
274609 TGATAGAGGGTAGAACGTTACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
274649 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCAAGA-CTGACAAGAAATCGAT
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATC-GACAAGAAACCGAT
* * * *
274711 AGAGTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCATAGAGTTTATTATGCAAAATGTTCT
63 AGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCT
* * *
274776 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGC-CCATATGAAGAGTTTTTACA
127 TAGTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACA
* * * *
274839 ATTAAAATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACA
192 ATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACC
* * * *
274904 CTTTGATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTT
257 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
* * * *
274969 GGATTATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
322 GGATCATATATATGATTGGCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
275034 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
386 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
***
275099 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGTTTGAAGTGTGGTGATGATAGTGGTT
451 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTT
* * * *
275164 GATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGAT-GGCATGGAGAATGATAGT-ATTCAA
516 GATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGG-TCGGCGTGGACAATGATAGTAATTCAA
*
275227 AGGAGGGATTGT
580 AGGATGGATTGT
275239 ATATGAGTTA
Statistics
Matches: 2408, Mismatches: 211, Indels: 56
0.90 0.08 0.02
Matches are distributed among these distances:
677 2 0.00
678 610 0.25
679 3 0.00
681 1 0.00
683 1 0.00
686 2 0.00
687 246 0.10
688 356 0.15
689 1019 0.42
690 166 0.07
691 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
ACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
CATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGATG
GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
Found at i:275788 original size:598 final size:598
Alignment explanation
Indices: 274649--275829 Score: 1838
Period size: 598 Copynumber: 2.0 Consensus size: 598
274639 ATAGTAGAGC
*
274649 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACTGACAAGAAATCGATAGA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGAC-AATTCAAGACTGACAAGAAACCGATAGA
* *
274714 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCATAGAGTTTATTATGCAAAATGTTCTTAG
65 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAATGTTCTTAG
** *
274779 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGCCCATATGAAGAGTTTTTACAATTAA
130 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGAACATATGAAGAGTCTTTACAATTAA
* * *
274844 AATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
195 AATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACACTTTG
* ** *
274909 ATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTTGGATT
260 ATGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATC
274974 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
325 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
275039 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
390 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *** *
275104 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGTTTGAAGTGTGGTGATGATAGTGGTTGATTG
455 AATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGATTG
* *
275169 GATGTAACGAAAATGGTGAAGGATGCTTGTGGAT-GGCATGGAGAATGATAGT-ATTCAAAGGAG
520 GATGTAACGAAAATGGTGAAGGATGCTTGTGG-TCGACATGGACAATGATAGTAATTCAAAGGAG
275232 GGATTGTATATGAGT
584 GGATTGTATATGAGT
* *
275247 TAGGAACCAACGCTATAATAAGATGAAATGGATGA-AAGCTTCAAGA-TCGACAAGAAACCGATA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACAA--TTCAAGACT-GACAAGAAACCGATA
* *
275310 GAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAAT-TTCT
63 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-CAAAATGTTCT
* * * * * *
275374 TAGTACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACA
127 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATA-GGAACATATGAAGAGTCTTTACA
* *
275439 ATTAAAATAAAA-AATCACCTAAATGCAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACC
190 ATTAAAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACA
* *
275503 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
255 CTTTGATGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTC
* * *
275568 AGATCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACA-TCGCAGTGCTTTGATTTAAGA
320 AGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
*
275632 CTGAAAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGT
385 CTGAAAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGT
*
275696 AATGGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGT
449 AATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGT
* * * *
275761 TGATTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAA
514 TGATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGTCGACATGGACAATGATAGTAATTCAA
275826 AGGA
579 AGGA
275830 CGGTTGTGAC
Statistics
Matches: 531, Mismatches: 43, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
596 2 0.00
597 3 0.01
598 301 0.57
599 194 0.37
600 31 0.06
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (598 bp):
TAGGAACCAAAGCTATAACAAGATGAAATGGATGACAATTCAAGACTGACAAGAAACCGATAGAG
TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAATGTTCTTAGA
CAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGAACATATGAAGAGTCTTTACAATTAAA
ATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACACTTTGA
TGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATCA
TATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAAA
ATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAA
ATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGATTGG
ATGTAACGAAAATGGTGAAGGATGCTTGTGGTCGACATGGACAATGATAGTAATTCAAAGGAGGG
ATTGTATATGAGT
Found at i:276696 original size:689 final size:688
Alignment explanation
Indices: 275247--279268 Score: 6232
Period size: 689 Copynumber: 5.9 Consensus size: 688
275237 GTATATGAGT
*
275247 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* *
275312 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAATTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGA-AAAAGTTCTTAG
* * * * * *
275377 TACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
*
275442 AAAATAAAA-AATCACCTAAATGCAATTTAATTCAATTAAATGACTT-TCCATTCTTCTAACCCT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGT-CATTCTTCTTACCCT
275505 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
*
275570 ATCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACATCGCAGTGCTTTGATTTAAGACTG
324 ATCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
*
275635 AAAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGTAAT
389 AAAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
* * *
275699 GGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGA
453 GGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGA
* *
275764 TTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGG
518 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGG
* **
275829 ACGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATTAAA
583 ATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
275893 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
275934 TAGGAACTAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
*
275999 TTTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTA
66 -GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAA-AAGTTCTTA
* * *
276064 GTACAAATATCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAAT
129 GTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * *
276129 TAAAATAAAACAATAACCTAAATGCAGTTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
* *
276194 TTGATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
* * * *
276259 ATCATATATATGATTGGC-CGATCTTGATTCTAGAAAGAACTTCACAATGCTTTGATTTAACACT
324 ATCATATATATGATT-GCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
* *
276323 AAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTAT-ATAGGTAA
388 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGA-AAGTAA
* *
276387 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGATTGTGGTTG
452 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
*
276452 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAG
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAG
*
276517 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
276582 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
276624 TACGAACCAACGCTATAACGAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* *
276689 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAA-AAAGTTCTTAG
276754 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
276819 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * *
276884 TAATTGTTGCCCATGTAGATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCAG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCAG
* **
276948 ATCATATATATGATTTGC-CGATCTTGA---T--T-----C-TCGCAGTGCTCTGATGGAAGACT
324 ATCATATATATGA-TTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
*
277001 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATATAAATATGTGTATGAAAGTAAT
388 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
* * *
277066 GGAAATGATAGAATGAAGTTGTAGTGGATTGTAAATGAAAGAAGTGTGCTAATGATAGTGGTTGA
453 GGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGA
* * * * *
277131 TTGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGGCGTGGACAGTGATAGTAAATCAAAGG
518 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGG
* *
277196 ATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAATATACTAAAGATGGAATCGAA
583 ATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
* *
277261 GTTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * * *
277302 TAGTAACCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAGACCTACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * **
277367 GTTCTAATCCAAGAACTAAAATGAAAGCAATATTTGAAAGAGTTTATTATGCAAAAAGTTCCAAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATG-AAAAAGTTCTTAG
* * * *
277432 TACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACTATATGAATAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
** * *
277497 AAAATAAAACAATCTTCTAAATGCAATTTAATTGAATTAAATGACTTGTCATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * *
277562 TGATAGTTTCCCATGTAGATTAAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
*
277627 TCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACATCGCAGTGCTTTGATTTAAGACTGA
325 TCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
*
277692 AAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGTAATG
390 AAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * *
277756 GAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* *
277821 TGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* **
277886 CGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATTAAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
277950 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
277990 TAGGAACTAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
*
278055 TTTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTA
66 -GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAA-AAGTTCTTA
* * *
278120 GTACAAATATCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAAT
129 GTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * *
278185 TAAAATAAAACAATAACCTAAATGCAGTTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
*
278250 TTGATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
278315 ATCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
324 ATCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* ** * **
278380 AAAATGTACAAAGAAAATTATAAGAAGAGAAATATGTATATTTAAATATGTAAATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* *
278445 GAAACGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * *
278510 TGGATGTAAGGAAAAATGCTGAAGGATGTTTGTGGTTGGCGTGGACAACGATAGTAATTCAAAGG
519 TGGATGTAAGG-AAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGG
* * * *
278575 TTGTATTGTGACTCTCTAACTATATATGAGTTAGAAACCAGCAATATACTAAAGATGGAATCGAA
583 ATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
* *
278640 GTGATAGAGGGTAGAACGTGACCCACTAGCTATAGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
278681 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCAAGA-CTGACAAGAAATCGAT
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATC-GACAAGAAACCGAT
* * * * *
278743 AGAGTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCATAGAGTTTATTATGCAAAATGTTCT
63 AGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATG-AAAAAGTTCT
* * *
278808 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGC-CCATATGAAGAGTTTTTACA
127 TAGTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACA
* * * *
278871 ATTAAAATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACA
192 ATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACC
* * * *
278936 CTTTGATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTT
257 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
* * * * *
279001 GGATTATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
322 AGATCATATATATGATTGCTCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
*
279066 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTA
386 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
**
279131 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGT-AATG-TTGAAGTGTGGTGATGATAGTGGTT
451 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTT
* * * *
279194 GATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGAT-GGCATGGAGAATGATAGT-ATTCAA
516 GATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGG-TCGGCGTGGACAATGATAGTAATTCAA
*
279257 AGGAGGGATTGT
580 AGGATGGATTGT
279269 ATATGAGTTA
Statistics
Matches: 3046, Mismatches: 251, Indels: 78
0.90 0.07 0.02
Matches are distributed among these distances:
677 6 0.00
678 606 0.20
679 4 0.00
681 1 0.00
683 1 0.00
685 15 0.00
686 37 0.01
687 101 0.03
688 461 0.15
689 1387 0.46
690 272 0.09
691 153 0.05
693 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAGTTCTTAGT
ACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
CATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGATG
GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
Found at i:279816 original size:596 final size:596
Alignment explanation
Indices: 278681--279857 Score: 1798
Period size: 596 Copynumber: 2.0 Consensus size: 596
278671 ATAGTAGAGC
*
278681 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACTGACAAGAAATCGATAGA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGAC-AATTCAAGACTGACAAGAAACCGATAGA
* *
278746 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCATAGAGTTTATTATGCAAAATGTTCTTAG
65 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAATGTTCTTAG
** *
278811 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGCCCATATGAAGAGTTTTTACAATTAA
130 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGAACATATGAAGAGTCTTTACAATTAA
* * *
278876 AATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
195 AATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACACTTTG
* **
278941 ATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTTGGATT
260 ATGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATT
*
279006 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
325 ACATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
279071 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGA
390 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGA
* ** *
279136 AATGATAGAATGAAGTTGAAGTGGATTGTAATGTTGAAGTGTGGTGATGATAGTGGTTGATTGGA
455 AATGATAGAATCAAGTTGAAGTGGATTGTAATGAAGAAGTGTGGTGATGATAATGGTTGATTGGA
* *
279201 TGTAACGAAAATGGTGAAGGATGCTTGTGGAT-GGCATGGAGAATGATAGT-ATTCAAAGGAGGG
520 TGTAACGAAAATGGTGAAGGATGCTTGTGG-TCGACATGGACAATGATAGTAATTCAAAGGAGGG
279264 ATTGTATATGAGT
584 ATTGTATATGAGT
* *
279277 TAGGAACCAACGCTATAATAAGATGAAATGGATGA-AAGCTTCAAGA-TCGACAAGAAACCGATA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACAA--TTCAAGACT-GACAAGAAACCGATA
* *
279340 GAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAAT-TTCT
63 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-CAAAATGTTCT
* * * * * *
279404 TAGTACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACA
127 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATA-GGAACATATGAAGAGTCTTTACA
* *
279469 ATTAAAATAAAA-AATCACCTAAATGCAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACC
190 ATTAAAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACA
* *
279533 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
255 CTTTGATGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTC
* * *
279598 AGA-T-CATATATGATTGCTCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
320 AGATTACATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
* *
279660 CTGAAAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGT
385 CTGAAAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGT
*
279724 AATGGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGT
449 AATGGAAATGATAGAATCAAGTTGAAGTGGATTGT-AATG-AAGAAGTGTGGTGATGATAATGGT
* * * *
279789 TGATTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAA
512 TGATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGTCGACATGGACAATGATAGTAATTCAA
279854 AGGA
577 AGGA
279858 CGGTTGTGAC
Statistics
Matches: 527, Mismatches: 43, Indels: 21
0.89 0.07 0.04
Matches are distributed among these distances:
593 1 0.00
594 118 0.22
595 37 0.07
596 183 0.35
597 157 0.30
598 31 0.06
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (596 bp):
TAGGAACCAAAGCTATAACAAGATGAAATGGATGACAATTCAAGACTGACAAGAAACCGATAGAG
TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAATGTTCTTAGA
CAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGAACATATGAAGAGTCTTTACAATTAAA
ATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTCCATTCTTCTAACACTTTGA
TGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATTA
CATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAAA
ATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGAA
ATGATAGAATCAAGTTGAAGTGGATTGTAATGAAGAAGTGTGGTGATGATAATGGTTGATTGGAT
GTAACGAAAATGGTGAAGGATGCTTGTGGTCGACATGGACAATGATAGTAATTCAAAGGAGGGAT
TGTATATGAGT
Found at i:280724 original size:689 final size:688
Alignment explanation
Indices: 279277--283974 Score: 6935
Period size: 678 Copynumber: 6.9 Consensus size: 688
279267 GTATATGAGT
*
279277 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
*
279342 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAATTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGA-AAAAGTTCTTAG
* * * * * *
279407 TACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
*
279472 AAAATAAAA-AATCACCTAAATGCAATTTAATTCAATTAAATGACTT-TCCATTCTTCTAACCCT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGT-CATTCTTCTTACCCT
*
279535 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGG
279600 ATC--ATATATGATT-GCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
324 ATCATATATATGATTGGC-CGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
*
279662 GAAAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGTAA
388 GAAAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAA
* * *
279726 TGGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTG
452 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
* *
279791 ATTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAG
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAG
* **
279856 GACGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATTAA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
279920 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
279962 TAGGAACTAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* *
280027 TTTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTA
66 -GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAA-AAGTTCTTA
* * *
280092 GTACAAATATCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAAT
129 GTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * *
280157 TAAAATAAAACAATAACCTAAATGCAGTTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
*
280222 TTGATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATTG-TCTCGATTATGAGTTTCG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATA-TGATCTCGATTATGAGTTTCG
* * * *
280286 GATCATATATATGATTGGCCGATCTTGATTCTAGAAAGAACTTCACAATGCTTTGATTTAACACT
323 GATCATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
* * *
280351 AAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGTAGGTAAT
388 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
* * *
280416 GGAAATGATAGAATGAAGTTGAAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGATTGTGGTTAA
453 GGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGA
*
280481 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGG
518 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGG
280546 ATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
583 ATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
*
280611 GTGATAGAGGGTAGAACGTAACCCACTAGCTATAGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
280652 TAGGAACCAACGCTATAACGAGATGAAATGGATGAAAACTTCAAGATCGACAAGAAACCGAGAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * *
280717 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
* * *
280782 TACAAATGACGTGGAGGTGCCTATTTATAGTGTTGATAGGCACTATTTGAAGAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * * *
280847 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGTCTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * * *
280912 TAATGGTTGCCCATGTAGATTAAAAATGGAAGAATATTTG-TATGATCTCGGTTATGAGTTTCGG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCGG
* * * *
280976 ATCATATATATAATTTGCCGATCTTGA---T--T-----C-TCGCAGTGCTCTGATTGAAGACTG
324 ATCATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
281030 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * * * *
281095 AAAATGATAGAATAAAGTTGACGTGGATTGTAAATGAAAGAAGTGTGGTGATAATATTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * *
281160 TGGATGTAATGAAAATGGTGAAGGATATTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* *** * * *
281225 TGGATAGTGAATGTCTAGA-TATATATGTGTTAGGAACCAACAATATACTAAAGATGGAATCGAT
584 TGGATTGTGACCCTCTA-ACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
* *
281289 GTGATAGAGGCTGGAACGTGACCCACTAGCTATAGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* ** * *
281330 TAGGAACCAACGCTATAACAAGATGAAATGGACGAATCCTTCAAGACCTACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * *
281395 GATCTAATACAAGAACTAAAATGAATGCAATCTATCAAAGAGTTTATTATGAAAAAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAG
* ** * * * * *
281460 TACAAATGTCGTGCAGGTTTCTATTTATAGTGTTTATAGGCAACAAATGAAGTGTTTTTACCATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
** * * *
281525 AAAATAAAACAATCAGTTAAATACAATTTAATTCAATTAAATGGCTTGTCATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* *
281590 AGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGA
* *
281655 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATGATAAGACTG
325 TCATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGAT-TTAAGACTG
* *
281720 AAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * * * **
281785 GAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGGTTGTTTTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
*
281850 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* *
281915 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACTAACAATATACTAAATATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
281980 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
282020 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * *
282085 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
282150 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
282215 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * *
282280 TAATTGTTGCCCATGTAGATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCGG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCGG
* * **
282344 ATCATATATATGATTTGCCGATCTTGA---T--T-----C-TCGCAGTGCTCTGATGGAAGACTG
324 ATCATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
*
282398 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATATAAATATGTGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * * *
282463 GAAATGATAGAATGAAGTTGTAGTGGATTGTAAATGAAAGAAGTGTGCTAATAATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * * * *
282528 TGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGGTGTGGACAGTGATAGTAAATCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* *
282593 TGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAATATACTAAAGATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* *
282658 TTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * * *
282698 TAGTAACCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAGACCTACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * **
282763 GTTCTAATCCAAGAACTAAAATGAAAGCAATATTTGAAAGAGTTTATTATGCAAAAAGTTCCAAG
66 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAG
* * * *
282828 TACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACTATATGAATAGTTTTTACAATT
130 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
** * *
282893 AAAATAAAACAATCTTCTAAATGCAATTTAATTGAATTAAATGACTTGTCATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * *
282958 TGATAGTTTCCCATGTAGATTAAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGA
** *
283023 TCATATATATGATTACCCAATCTTGATAT-TAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
325 TCATATATATGATTGGCCGATCTTGAT-TCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* ** * *
283087 AAAATGTACAAAGAAAATTATAAGAAGAGAAATATGTATATTTAAATA--TATATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
*
283150 GAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * *
283215 TGGATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGCGTGGACAACGATAGTAATTCAAAGGT
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGA
* * *
283280 TGTATTGTGACTCTCTAACTATATATGAGTTAGAAACCAGCAATATACTAAAGATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* *
283345 TGATAGAGGGTAGAACGTGACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
283385 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCAAGA-CTGACAAGAAATCGAT
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATC-GACAAGAAACCGAT
* * * *
283447 AGAGTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCATAGAGTTTATTATGCAAAATGTTCT
63 AGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCT
* * *
283512 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGC-CCATATGAAGAGTTTTTACA
127 TAGTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACA
* * * *
283575 ATTAAAATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACA
192 ATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACC
* * * *
283640 CTTTGATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTT
257 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
* * * *
283705 GGATTATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
322 GGATCATATATATGATTGGCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
283770 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
386 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
***
283835 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGTTTGAAGTGTGGTGATGATAGTGGTT
451 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTT
* * * * *
283900 GATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGAT-GGCATAGAGAATGATAGT-ATTCAA
516 GATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGG-TCGGCGTGGACAATGATAGTAATTCAA
*
283963 AGGAGGGATTGT
580 AGGATGGATTGT
283975 ATATGAGTTA
Statistics
Matches: 3606, Mismatches: 355, Indels: 102
0.89 0.09 0.03
Matches are distributed among these distances:
677 4 0.00
678 1188 0.33
679 20 0.01
680 1 0.00
681 2 0.00
683 2 0.00
684 1 0.00
685 231 0.06
686 235 0.07
687 468 0.13
688 127 0.04
689 574 0.16
690 751 0.21
691 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
ACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
CATATATATGATTGGCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCAAAGGATG
GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
Found at i:284524 original size:598 final size:598
Alignment explanation
Indices: 283385--284565 Score: 1838
Period size: 598 Copynumber: 2.0 Consensus size: 598
283375 ATAGTAGAGC
*
283385 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACTGACAAGAAATCGATAGA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGAC-AATTCAAGACTGACAAGAAACCGATAGA
* *
283450 GTTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCATAGAGTTTATTATGCAAAATGTTCTTAG
65 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAATGTTCTTAG
** *
283515 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGCCCATATGAAGAGTTTTTACAATTAA
130 ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGAACATATGAAGAGTCTTTACAATTAA
* *
283580 AATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACACTTTG
195 AATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACACTTTG
* ** *
283645 ATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTTGGATT
260 ATGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATC
283710 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
325 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAA
283775 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
390 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *** *
283840 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGTTTGAAGTGTGGTGATGATAGTGGTTGATTG
455 AATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGATTG
* *
283905 GATGTAACGAAAATGGTGAAGGATGCTTGTGGAT-GGCATAGAGAATGATAGT-ATTCAAAGGAG
520 GATGTAACGAAAATGGTGAAGGATGCTTGTGG-TCGACATAGACAATGATAGTAATTCAAAGGAG
283968 GGATTGTATATGAGT
584 GGATTGTATATGAGT
* *
283983 TAGGAACCAACGCTATAATAAGATGAAATGGATGA-AAGCTTCAAGA-TCGACAAGAAACCGATA
1 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACAA--TTCAAGACT-GACAAGAAACCGATA
* *
284046 GAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAAT-TTCT
63 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-CAAAATGTTCT
* * * * * *
284110 TAGTACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACA
127 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATA-GGAACATATGAAGAGTCTTTACA
* *
284175 ATTAAAATAAAA-AATCACCTAAATGCAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACC
190 ATTAAAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACA
* *
284239 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
255 CTTTGATGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTC
* * *
284304 AGATCATATATATGATTGCTCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
320 AGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
*
284368 CTGAAAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGT
385 CTGAAAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGT
*
284432 AATGGAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGT
449 AATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGT
* * * * *
284497 TGATTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAA
514 TGATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGTCGACATAGACAATGATAGTAATTCAA
284562 AGGA
579 AGGA
284566 CGGTTGTGAC
Statistics
Matches: 531, Mismatches: 43, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
596 2 0.00
597 3 0.01
598 303 0.57
599 192 0.36
600 31 0.06
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (598 bp):
TAGGAACCAAAGCTATAACAAGATGAAATGGATGACAATTCAAGACTGACAAGAAACCGATAGAG
TTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGCAAAATGTTCTTAGA
CAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGAACATATGAAGAGTCTTTACAATTAAA
ATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACACTTTGA
TGGTTGCCCATGTAGAATGAAAATGGATGAAGAATGATATGATCTCGATTATGAGTTTCAGATCA
TATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGACTGAAA
ATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAA
ATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGATTGG
ATGTAACGAAAATGGTGAAGGATGCTTGTGGTCGACATAGACAATGATAGTAATTCAAAGGAGGG
ATTGTATATGAGT
Found at i:285432 original size:689 final size:688
Alignment explanation
Indices: 283983--302112 Score: 13298
Period size: 689 Copynumber: 26.2 Consensus size: 688
283973 GTATATGAGT
*
283983 TAGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* *
284048 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGATAAAATTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGA-AAAAGTTCTTAG
* * * * * * *
284113 TACAAATGTCGTGTAGGTTCCTATTTATAGTGTTGATAGGGAACATATGAAGTGTCTTTACAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* *
284178 AAAATAAAA-AATCACCTAAATGCAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
284242 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
*
284307 TCATATATATGATTGCTCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
325 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
*
284372 AAATGTACAAACAA-GATTATAAGAAGGGAAATATGTATATTTAAATTTGTGTATGAAAGTAATG
390 AAATGTACAAACAACG-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * *
284436 GAAATGATAGAATCATGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAATGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * *
284501 TGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
* **
284566 CGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATTAAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
284630 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
284670 TAGGAACTAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * *
284735 TTTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTA
66 -GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAAA-AAGTTCTTA
* * * *
284800 GTACAAATATCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAAAGTTTTTAAAAT
129 GTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * *
284865 TAAAATAAAACAATAACCTAAATGCAGTTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
* * **
284930 TTGATGGTTGTCCATGTAGATTGAAAATGGATGAATAATGATATGGTCTCGATTATGAGTTTTGG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
* * * * * *
284995 ATCATATATATGATTGGCCGATCTTGATTCTAGAAAGAACTTCACAATGCTTTGATTTAACACTA
324 ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* *
285060 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGTAGGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* *
285125 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGATTGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* *
285190 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
285255 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
*
285320 TGATAGAGGGTAGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
285360 TAGGAACCAACGCTATAACGAGATGAAATGGATGAAAACTTCAAGATCGACAAGAAACCGAGAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* *
285425 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
* * * *
285490 TACAAATGACGTGGAGGTGCCTATTTATAGTGTTGATAGGCACTATTTGAAGAGTTTTTACAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
285555 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * * *
285620 TAATGGTTGCCCATGTAGATTGAAAATGGAAGAATATTTG-TATGATCTCGGTTATGAGTTTCGG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCAG
* * *
285684 ATCATATATATAATTTG-CCGATCTTGA---T--T-----C-TCGCAGTGCTCTGATTGAAGACT
324 ATCATATATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
285737 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
388 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
* * * * *
285802 GAAAATGATAGAATAAAGTTGACGTGGATTGTAAATGAAAGAAGTGTGGTGATAATATTGGTTGA
453 GGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGA
* * *
285867 TTGGATGTAATGAAAATGGTGAAGGATATTTGTGGTTGGCGTGGAGAATGATAGTAATTCAAAGG
518 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGG
* *** * *
285932 ATGGATAGTGAATGTCTAGA-TATATATGTGTTAGGAACCAACAATATACTAAAGATGGAATCGA
583 ATGGATTGTGACCCTCTA-ACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
* * *
285996 TGTGATAGAGGCTGGAACGTGACCCACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * ** * *
286038 TAGGAACCAACACTATAACAAGATGAAATGGACGAATCCTTCAAGACCTACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
**
286103 GTTCTAATCCAAGAACTAAAATGAAAGCAATAATTCAAAGAGTTTATTATGCAAAAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAG
*** *
286168 TACAAATG-CAATGGAGACACCTATTTATAGTGTTGATATGCACCATATGAAGAGTTTTTACAAT
130 TACAAATGTC-ATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * * *
286232 TAAAATAAAACAATCTCCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCTT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
* * *
286297 TTGATGGTTTCCCATGAAGATTGAAAATGGATGAATAATGTTATGATCTCGATTATGAGTTTCAG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
* * ** * *
286362 ATCATATATAAGATTGTCCGAAATTGATTCTATTAAGAACTTCACAGTGCTTTGATTTAAGACTG
324 ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* * * * * *
286427 AAAATGTACAAACAACGTTATAAGAATGGTAATATGTATATTTAAATATCTGTATGTAGGTATTG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
*
286492 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * * *
286557 TGGATGTAATGAAAATGGTGAAGGATGTTTGTGGTTTGCATGGAGAATGATAGT-ATTCAATGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
* * * * **
286621 TGGATTATGACCTTATAACTATATATGAGTTAGGAACCAACAATATACTAATCATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
286686 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
286726 TAGGAACCAATGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCTATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * *
286791 GTTCTATTCCAAGAACTAAAATGAATGCAATTTTTC-AAGAAGTTTATTATGAAAAAAATTCTTA
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAG-AGTTTATTATG-AAAAAGTTCTTA
* * * * * * *
286855 CTAAAAATGTCATGGAGGTTCTTATGTATAGTGTTGATAGGAACCACATGAAGAGTTTTTACAAT
129 GTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * *
286920 TAAAATAAAATAATCACCCAAATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
* * * * * *
286985 TTAATGGTTTCCCATGTAGATTGAAAATGGATAAATATTTG-TATGATCTCGGTTATGAATTTCA
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCA
* * * * *
287049 GATCATATATATGATTTG-TCAATCTTGATTCT--T--G--C-T----GTGCTCTGATTGAAGAA
323 GATCATATATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGAC
*
287102 TTAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAA
387 TGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAA
* * * * * *
287167 TGAAAATGATAGAATAAATTTGACGTGGATTGTAAATGAATGAAGTGTGCTGATGATAGTGGTTG
452 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
* ** * * * * *
287232 ATTGAATGTAACAAAAATGGTGAATGATGTTTGTGGTTGGTGTAGAGAATGATAGTAATTCAAAT
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAG
* *** *
287297 GATGGATTATGAATGTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
*
287362 AGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
287404 TAGGAACCAACGCTATAACAAGATGAAATGGATG-AAGCCTTCAAGACCTACAAGAGACCGATAG
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAG-CTTCAAGATCGACAAGAAACCGATAG
**
287468 AGTTCTAATCCAAGAACTAAAATGAAAGCAATAATTCAAAGAGTTTATTATGCAAAAAGTTCTTA
65 AGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTA
* *
287533 GTACAAATGCCATGGAGGTGCATATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
129 GTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
* * * * * *
287598 TAAAATAAAACAATCTCCTAATTACAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACCAT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
*
287663 TTGATGGATT-CCCATGAAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCA
259 TTGATGG-TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCA
* * * *
287727 CATCATATATATGATTGCCCGTTCTTGATTCTATTAAGAACTTCGCAGTGCTTTGATTTAAGAGT
323 GATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
*
287792 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTTTATGAAAGTAAT
388 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
* * * *
287857 GGAAACGATAGAATGTAGTTGAAGTGGATTATAAATGAAAGAAGTATGGTGATGATAGTGGTTGA
453 GGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGA
287922 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGG
518 TTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGG
* * * *
287987 ATGGATTGTGACCCTCTAACTATATATGAGATAGAAATCAACAATATAATAAAGACGGAATCGAA
583 ATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA
* * * * *
288052 GTGATAGAGTGTGGAACGTGACTCACTAGTTATTGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
288093 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCAAGACCGACAAGAAATCGATA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATA
* * * * *
288156 GATTTCTAATCCAAAAATTAAAATGAAAGCAATCTTTCAGAGAGTTTATAATGCAAAAAGTTCTT
64 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTT
* * * *
288221 AGTACAAATGCCATGGAGGTGTCTATTTATAGTGTTGATAGGAACCATATGATGAGTTTTTACAA
128 AGTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAA
* ** * *
288286 TTAAAATAAAACAATGACCTATGTGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACAC
193 TTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCC
* **
288351 TTTGATGGTTGCCCATGTAGATTGAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTG
258 TTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCA
* * * * *
288416 GATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTAAATAT
323 GATCATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGAC
*
288481 TGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTACGAAAGTAA
387 TGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAA
* * *
288546 TGGAAATGATAGAATGAATTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGGTAGTGATTG
452 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
* * *
288611 ATTGGATGTAATGAAAATAGTGAAGGATGTTTGTGGTTGGCGTGGAGAATGATAGT-ATTCAAAG
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAG
* * * * *
288675 GATGGATTATGACCCTATAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGGAATCGA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
* *
288740 TGTGATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * * *
288782 TAGGAACCAACTCTATAATAAGATGAAATGGATGAAAGCTTTAAGATCGA-AATGAAACCAATAG
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAA-GAAACCGATAG
*
288846 AGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAAGTTCTTA
65 AGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTA
* * * * * * * *
288911 GTACAAATGTCGTGCAGGTTCCTATTTATAGTGTTTATAGGCAACAAATGAAGTGTTTTTACCAT
129 GTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAAT
** * * *
288976 TAAAATAAAACAATCAGTTAAATACAATTTAATTCAATTAAATGGCTTGTCATTCTTCTAACCCT
194 TAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCT
*
289041 TAGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
259 TTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAG
289106 ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
324 ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* *
289171 AAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * * *
289236 GAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGGTTGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* *
289301 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
*
289366 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
289431 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
289471 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * *
289536 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
*
289601 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
289666 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * * *
289731 TAATTGTTGCCCATGTAGATTGAAAATGGATGAATATTG-TATGATCTCGGTTATGAGTTTCGGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
* **
289795 TCATATATATGATTTG-CCGATCTTGA---T--T-----C-TCGCAGTGCTCTGATGGAAGACTG
325 TCATATATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
*
289848 AAAATGTACAAACAACGTT-TAAGAAGGGAAATATGTATATATAAATATGTGTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * *
289912 GAAATGATAGAATGAAGTTGTAGTGGATTGTAAATGAAAGAAGTGTGCTAATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * * * *
289977 TGGACGTAAGGAAAATGGTGTAGGATGTTTGTGGTTGGTGTGGACAGTGATAGTAAATCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
* *
290042 TGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCATCAATATACTAAAGATGGAATCGAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* *
290107 TTATAGAGGGTGGAACGTAACCAACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * * * *
290147 TAGTAACCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAATACCTACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * **
290212 GTTCTAATCCAAGAACTAAAATGAAAGCAATATTTGAAAGAGTTTATTATGCAAAAAGTTCCAAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAG
* * *
290277 TACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACTATATGAATAGTTTTTACAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
** * * *
290342 AAAATAAAACAATCTTCTAAATGCAATTTAATTGAATTAAATGACTTGTTATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * *
290407 TGATAGTTTCCCATGTAGATTAAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
* *
290472 TC--ATATATGATTACCCAATCTTGATAT-TAGT-AGAACTTCGCAGTGCTTTGATTTAAGACTG
325 TCATATATATGATTGCCCGATCTTGAT-TCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* ** * *
290533 AAAATGTACAAAGAAAATTATAAGAAGAGAAATATGTATATTTAAATATGTATATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* *
290598 GAAACGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* * *
290663 TGGATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGCGTGGACAACGATAGTAATTCAAAGGT
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
* * *
290728 TGTA-T-TGACTCTCTAAC--TATATGAGTTAGAAACCAGCAATATACTAAAGATGGAATCG-AG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* *
290788 TGATAGAGGGT-AAACGTGACCCACTAGCTATAGTAGAGC
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
290827 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCAAGA-CTGACAAGAAATCGAT
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATC-GACAAGAAACCGAT
* * * *
290889 AGAGTTCTAATCCAATAATTAAAATGAAAGCAATCTTTCATAGAGTTTA-TATGCAAAATGTTCT
63 AGAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCT
* *
290953 TAG-ACAAATGCCATGGAAGTGCCTATTTATAGTGTTGATAGGC-CCATATGAAGAGTTTTTACA
127 TAGTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACA
* * * *
291016 ATTAAAAT-AAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTTTCATTCTTCTTACA
192 ATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACC
* * * *
291080 C-TTGATGGTTGCCCATGTAGAATGAAAATGGATTAAGAATGATATGATCTCGATTATGAGTTTT
257 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
* * * *
291144 GGATTATATATATGA-TGCCCGATCTTGATTCTAGTAAGAAAATTCGCAGTGCTTTGATTGAAGA
322 AGATCATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
291208 CTGAAAATGTACAAACAACGTTAT-A-AAGGGAAATATGTATATTTAAATATGTGTATGAAAG--
386 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
***
291269 -T--AAATGAATAGAATGAAGTTGAAGTGGATTGTAAATGTTTGAAGTGTGGTGATGATAGTGGT
451 ATGGAAATG-ATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGT
* * * * *
291331 TGATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGATGGCATGGAGAATGATAGT-ATTCAA
515 TGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAA
* ** * *
291395 AGGA-GGA-T-TG------------TATATGAGTTAGGAACCAACGCTATAAT-AAGATGAAAT-
580 AGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATC
* * * * * * * *** *
291443 GGA-TGAAAGCTTCAAGATCGACAAG-AACCGA-TAGAGTTCTAATCCAAGAAC
645 GAAGTGATAG----AGGGTGGA-ACGTAACCCACT--AG--CT-ATAGTAGAGC
* * * * * * * * *
291494 TAAAATGAATGCAA-TCTTTCAA-AGAGTTTATTAT-GAT-AACATTTCTTATACAA-ATGTCGT
1 T---AGGAA-CCAACGCTAT-AACA-AGATGA-AATGGATGAA-A--GC-T-T-CAAGA--TCGA
** *** * * * * * ** *
291554 GTAGGTTCCTATTTATAGTGT-TGAT--AGGGAAC--ATATG-AAG-TGTCTTT-ACA-A--TTA
51 CAAGAAACCGA--TAGAGT-TCTAATCCA-AGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTA
** * * * * * * * * *
291608 AAAT-AAAAA-TCACCTAAATGCAATTTAAT-TCAAT-TA-ATGACT-TTTCAT--TCTT-CTA-
112 TTATGAAAAAGT--TCTTAGTAC-A---AATGTC-ATGGAGGTGCCTATTT-ATAGTGTTGATAG
* * * * * * * * * * *
291663 --ACCCTTTGATG-GTTGCCCATGTA-GATTGAAAATGGATGAATAATGA--TATGATCTCGATT
169 GCACCATATGAAGAGTT-----TTTACAATT-AAAAT--A-AAACAATCACCTA-AAT-GCAATT
* * ** ***
291722 ATGAGTTCAGATCATATATATGA-TTGCTCGA-TCTTGATT---C-TAAATGGTTGATTGGATGT
223 -T-AATTCA-AT--TA-A-ATGACTTG-TC-ATTCTT-CTTACCCTTTGATGGTTG--CCCATGT
* * ** * * ** * * * *
291781 A-A-GGAAAATTG-TGAAGGATG-TTTG-TGGTCGA-CGTG-G--ACA-ATGATAGTA-ATTCAA
276 AGATTGAAAATGGATGAATAATGATATGAT-CTCGATTATGAGTTTCAGATCATA-TATA-TGAT
* ** * ** * * * * * * *
291835 AGGACGGT-TGTGACCCT-CT---AAC-T---A-T-ATATGAGTTAGAAAC-CAACAATATACTA
338 TGCCCGATCT-TGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTA-AGACTGAA-AATGTAC-A
* ** * * **** ** * * *
291888 AAGATGGAATTAAGTGATAGAGGGTGGAACGTAACCCCTAGCTATAGTA-GAGCTAGGAACTAAC
399 AACAACG--TT-A-T-A-AGA-AG-GGAA-AT-ATGTATATTTA-AATATGTG-TATG-A--AA-
** * * * * * ** * ** * **
291952 GCT-ATAACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAG-AACCGATAGATTTTCTAATC
448 G-TAAT-GGAA-ATGATA-GAATG-AAG-TTGAAG-TGGAT-TGTAAATGAAAGA-AGTGTGGT-
* * * ** * ** * *** ** * * *
292015 CAAGAACTAAAATGAATGCAAT-CTTTTAAAGAGTTTATTATGAAAGAAGTTCT-TAGTACAAAT
503 GATG-A-T--AGTGGTTG-ATTGGATGT-AAG-GAAAATGGTGAAGGATGTT-TGTGGT-----T
** ** * * * * * * * * * * *
292078 ATCGTGGA-GTTGCCTA-T--TT-ATAGTG-TTGATAG-GCACCATATGAAAGTTTTTA-AAATT
555 GGCGTGGACAATG-ATAGTAATTCAAAG-GATGGATTGTG-ACCCTCT--AACTATATATGAGTT
** ** * * ** * * * *
292135 A-AAATAAAACAATA-ACCTAAATGCAGTTTAATTC-AATTCA-ATGA-CTTGTCATTCTTCTTA
615 AGAAA-CCAACAATATA-CTAAA-G-A-TGGAA-TCGAAGTGATA-GAGGGTG-GA-AC--GTAA
** * *
292195 CCCTTTGATGGT-T-GTCCATGTAGA
669 CCCACT-A-GCTATAGT--A-G-AGC
* * *** * * ** * *** * * * * * * * **
292219 TTGAAAATGGATG-AATAATGATATGGTCTCGATTATGAGTTTC-GGATCATATATATGATTGGC
1 TAG-GAACCAACGCTATAACAAGATGAAATGGATGA-AAGCTTCAAGATC-GACA-A-GA--AAC
* * **
292282 CGATCTTGA-TTCTAGA---AAGAACT----T--CA-CAATGCTTT----GA-TTTAACACT-AA
59 CGA--TAGAGTTCTA-ATCCAAGAACTAAAATGAAAGCAAT-CTTTCAAAGAGTTTATTA-TGAA
* * * * * ** *
292330 AAATGTAC--A-AAC-AACGTTATAAGAGGGAAATATGTATATTAAATATGTGTATGTAGGTAAT
119 AAA-GTTCTTAGTACAAATGTCAT-GGA-GG-----TGCCTATT-TATA-GTGT-TG-A--T-A-
* ** ** * * * **** * *
292391 GG-A-AATGATAGAATGAAGTTGAAGTGGATTGTAAAAGAAAGA-AGTGTGGT-GATG-ATTTGG
168 GGCACCAT-AT-GAA-G-AGTT--TTTACAAT-TAAAATAAA-ACAATCACCTAAATGCA-AT--
* ** * * * * **** * * * * * *
292451 TTGATTGGATGTAAGGA-AAATGGTGAAGGATGTT----TGTGGTCGGCGTGGACAATGATAGTT
222 TTAATTCAAT-TAA--ATGACTTGTCATTCTTCTTACCCTTTGAT--G-GTTGCCCATG-TAG--
* * * * ** * * *
292511 ATT-CAAA-GGATGGAT--TG---TGACCCTCTAACTATATGAGTTAAACCAACAATATACTAAA
278 ATTGAAAATGGATGAATAATGATATGA-TCTC-GA-T-TATGAGTTTCA-GATC-ATATA-T-AT
* ** ** ** * * *
292569 GATGGAATCGA-AGTGA-TAGAGGGTAACGTAAC--C-CACTAGCTAT-A-GT-AGAGCT----A
335 GATTG-CCCGATCTTGATTCTA--GTAA-G-AACTTCGCAGT-GCTTTGATTTAAGA-CTGAAAA
* * * * * * * *** * * *
292622 -G--GAACCAACGCTATAACG-AGATG-AATGGATGAAAACTTCAAGATCGACAAGAAACCGAGA
393 TGTACAAACAACGTTATAA-GAAG-GGAAAT--ATGTATA-TTTAA-AT--ATGTG-TA-TGAAA
* * * * * * * * * * *
292682 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTAA--AGAGTT-TATTATGAATGAAGTTCTT
448 G---TAAT---GGAAATGATA-GAATG-AA-GTTGAAGTGGA-TTGTA-AATGAAAGAAG-T-GT
* * * * ** ** * *
292744 AGTACAAATGA-CGTGGAGGTGCCTATTTATAGTGTTGATAGGCACTAT-TTGAA-GA-GTTTTT
500 GGT---GATGATAGT-G-GTTG---A-TTGGA-TG-T-A-AGG-AAAATGGTGAAGGATGTTTGT
** **** ** * * *** ** * * * *
292805 ACAATTAAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAACTTGTCATTCTTCTACCC
551 --GGTTGGCGT-GGACAATGA--T--A-GTAATTCAA-AGGA-TGGA-TTGTGA-CCCTCTA-AC
* ** * * * *
292870 TTTAATGGTTGCCCATGTAGATT-GAAAATGGAAGAATAT-TTGTATGATCTCGGTTATGAGTTT
603 --T-AT--AT----ATG-AG-TTAG-AAA-CCAACAATATACT-AAAGA--T-GG--A--A---T
* * *** * * * * * * *
292933 CGGATCA-TATATATAATTTGCCGATCTTGATTCTCGCAGT-GCTCT-GATTGAAGA
644 C-GA--AGT-GATAGAGGGTG--GAACGT-A-AC-C-CACTAGCTATAG-TAG-AGC
** * * * * * * * * * *
292987 CTGAAAATGTACAAACAACGTTATAAGAAG-GGAAAT--ATGTATA-TTTAAATATGTGTATGAA
1 TAGGA-----AC---CAACGCTATAACAAGATGAAATGGATG-AAAGCTTCAAGAT-CG-A--CA
** * * * ** * * * * * * *
293048 AGTAATGAATGATAGA-AT-AAAGTTGACGTGGATTGTAAATGAAAG-AAGTGTGGTGATAATAT
53 AG-AA--ACCGATAGAGTTCTAA--T-CCAAGAACT-AAAATGAAAGCAA-TCT-TTCA-AAGA-
* * ** * * * ** ** * *** * * *
293110 TGGTTGATTGGATGTAATGAAAATGGTGAAGGATATTTGTGGTTGG-CGTGGAGAATGATAGTAA
107 --GTTTATT--ATG-AA--AAAGTTCT-TAGTACAAATGT-CATGGAGGTGCCTATTTATAGT-G
* ** * * *** * **
293174 TTCA-AGG-ATGGATAGTGAATGTCTAGATATATATGTGTTAGGAA-CCAACAAT-A-CTAAA-G
162 TTGATAGGCA-CCATA-TGAA-G---AG-TTTTTA-CAATTA-AAATAAAACAATCACCTAAATG
** * * * * * * * * * *
293233 --ATGGAA-TCGATGTGATAGA-GGC-TG-GA-AC--GTGACCCACTAGCTATAGTAG---A-GC
218 CAATTTAATTCAAT-T-A-A-ATGACTTGTCATTCTTCTTACCC-TTTG--ATGGTTGCCCATG-
*** * * * ** * *
293285 TAGGAACCAACACT--AT-AACAAGATGAAATGGA---CGA--AT--CCTTCAAGA-CCTACA-A
275 TA-GATTGAA-AATGGATGAA-TA-ATGATAT-GATCTCGATTATGAGTTTC-AGATCATATATA
** * * ** ** * * * *
293338 -GA--AACCGA--TAGAGTTCTAATCCAAGAACTAAAAT-G-AAAGCAATAATTCAAAGAGTTTA
334 TGATTGCCCGATCTTGA-TTCTAGT--AAGAACT----TCGCAGTGCTTTGATT-TAAGA-CTGA
** * * ** * * * * *
293396 TTATG--CAAA-AA-GTTCTTAGTACAAATGCAATGGAGGCACCTATTTATAGTGTTGATGCACC
390 AAATGTACAAACAACGTT-ATA--AGAAGGGAAAT--ATGTA--TATTTA-AAT-ATG-TG----
** ** * * * * * ** *
293457 ATATGAAGAGTTTTTTACAAT--TAAAATAAACAATCTCCTAAATACAATT-TAATTCAATTAAA
441 -TATGAA-AGTAATGGA-AATGATAGAAT-GA-AGT-T--GAAGT-GGATTGT-A---AATGAAA
** ** ** ** **** **
293519 TGACTTGTCATTCTTCTAACCTTTGA-TGGTTTCCCATG-AAGATTGAAAATGGATGAATAATGT
493 -GAAGTGTGGTGATGATAGTGGTTGATTGG------ATGTAAG---GAAAATGG-TGAAGGATGT
* ** * * * * *
293582 TATGATCTCGATTATGAGTTTCAGATCATAT-ATAAG-ATTGTCCGAA--ATTGATTCTATAAGA
547 T-TG---T-G-GT-TG-GCGT-GGA-CA-ATGAT-AGTAAT-T-CAAAGGATGGA-T-TGT--GA
* * * * * * * * * * ** * *
293643 -ACT-TCAC-AGTGCTTTGATTTA-AGACTGAA-AATGTAC-AAACAACGTTATAAGAA-TGGTA
594 CCCTCTAACTA-T-ATATGAGTTAGAAAC-CAACAATATACTAAA-GATGGAAT-CGAAGTGATA
** * ** * *
293701 -A-TATGTATATTTAA---A-TATCTGTATGTAG-G-
654 GAGGGTGGA-ACGTAACCCACTAGCTATA-GTAGAGC
* * * * **** * ** * ***
293730 TAATGG-A--AATG--AT-AGAAGTTGAAGTGGATTGTAAAAGAAAGAAG-TGGTGATGATAGTG
1 T-A-GGAACCAACGCTATAACAAGATGAAATGGA-TG--AAAGCTTCAAGATCGACAAGA-AACC
* * * * * ** * *** *** *
293788 GTTTG-GATGTAAT-GAA-ATGGTGAAGGATGTTTGTGGT-TTGCATGGAATGATAGTATTCAAT
60 GATAGAGTTCTAATCCAAGA-ACT-AA-AATGAAAGCAATCTTTCA---AA-G--AGT-TT--AT
* ** * ** * * ** *** ** * * *
293849 GGATGGATTATGACCTTA-TA-ACTATAT-ATGAGTTAGGAACC-AACAATA-TACTAACATGGA
113 -TAT-GAAAAAGTTCTTAGTACA-AATGTCATG-G--AGGTGCCTATTTATAGTGTTGATA-GGC
* ** ** ** ** ** * * * * *
293909 ATCGA-AGTGATAGAGGGTGGA-ACGTAACCCTAGCTATAGTAGAGCTAGGAA-CCAATGCTATA
171 A-CCATA-TGA-AGAGTTTTTACAATTAA-AATA-AAACAAT-CACCTA--AATGCAAT--T-TA
* * * ** ** * * * ** *
293971 A--CAAGATGAAATGGA-TGAAAGCTTCAAGATCGACAAGAAACCTATAGA-GTTCTATCCAAG-
225 ATTC-A-ATTAAAT-GACT---TG--TC-A-TTCTTC--TTACCCT-TTGATGGT-TGCCCATGT
* * ** * * ** ** * * *
294031 A-ACT-AAAATGAATGCAATTTTCA-A-GAT-T-TATTATGAAAAAATTCTTA-C-TAAAAATCA
276 AGATTGAAAATGGATG-AATAATGATATGATCTCGATTATG---AGTTTCAGATCATATATATGA
*** * * * * * ** * * * * * * *
294088 -TGGAGGTTCTTATATAGTGTTGATAGGAACCACATGAAGAGTTTTTACAATTAA-AATAAAAAT
337 TTGCCCGATCTT-GAT--TCTAG-TAAGAACTTC--GCAGTG-CTTT-GATTTAAGACTGAAAAT
* * *** * **
294151 -CACCCAAATGCAA--TT-TAATTCAA-TTCAATGACTTGTCATTCTTCTTACCCTTTAATG-GT
394 GTA--CAAA--CAACGTTATAA--GAAGGGAAAT-A--TGT-A-T-AT-TTA---AAT-ATGTGT
* ** * * * * * * * * *
294210 TTCCCATGTAGATTGAAATGGATAATGTATGATCTCGGTTATGAATTTCAGATCATATATATGAT
442 AT-GAAAGTA-ATGGAAAT-GAT-A-GAATGA----AG-T-TGAA-GT-GGAT--TGTAAATGAA
* * ** * * * *
294275 TGTCAA-TCT--TGATTCTTGCTGTGCTCTGATTGAAGAAT-TAAAATGTACAAACAACGTATAA
492 AG--AAGTGTGGTGATGATAG-TG-G-T-TGATTG--G-ATGT--AA-G---GAA-AATG-GT--
* ** ** * * * * *
294336 GAAGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGAAATGATAGAAT-AAATTTGACGT
538 GAAGG----ATGT-T-TGT-GGT-TG-GCGTG-GA-CAATGATA-G-TA-ATTCAAA--GGA--T
* ***** *** * **
294400 GGATTGTAAATGAATGAAGTGTGCTGATGATAGTG-GTTGATTGAATGTAACAAAATGGTGAAGG
585 GGATTGTGACCCTCT-AA-----CT-AT-ATA-TGAGTT-A--GAAACCAACAATATACT-AA--
* ** * * * * * ** * *
294464 ATGTTTGTGGTTGGTGTAGAATGAGTAATTCAAATGATGGATTGTGAA---TCTAACTATA-TAT
635 A--------GATGGAATCG-A--AGTGA-T-AGAGGGTGGAACGT-AACCCACTAGCTATAGTA-
*
294525 GAGT
685 GAGC
** * * * ** * **
294529 TA-GAACCAACAATAT-ACTAAGATGGAATCGAAGTGATAGAGGGTGGAACG-T-GACCCA-CTA
1 TAGGAACCAACGCTATAAC-AAGATGAAAT-GGA-TGA-A-A-GCTTCAA-GATCGA-CAAGAAA
* * * * * * * **
294589 GCTATAGAG--CTAGGAACCAACGCTATAAC-AAGATGAAATGGATGAAGCCTTC-AAGA-CCTA
58 CCGATAGAGTTCTA--ATCCAA-G----AACTAAAATGAAA--G--CAATCTTTCAAAGAGTTTA
* * * * ** * * **
294649 -CAAGAGACCGATAGAGTTCTAATCCAAGAACTAAAATGAAAGCAATAATTCAAAGAGTTTATTA
112 TTATGA-A---A-A-AGTTCT--T---AGTAC--AAAT----G---TCA-TGGAGGTGCCTATT-
* ** ** * * * * *
294713 TGCAAAAAGTTCTTA-GTA-CAAATGCCATGGAGGTGCATATTTATAGTGTTGATAGGCACCATA
155 T--ATAGTGTTGATAGGCACCATATG--A-AGA-GT---T-TTTACA--ATT-A-A---A--ATA
*** * *
294776 TGAATAGTTTTTA-C-AATTAAAATAAAACAATCTCTAATACAATTTAATTCAATTAAATGACTT
201 --AA-A-CAATCACCTAA--A------------------TGCAATTTAATTCAATTAAATGACTT
* * * *
294839 TTCATTCTTCTAACCATTTGATGGATT-CCCATGAAGATTGAAAATGGATGAATAATGATATGAT
242 GTCATTCTTCTTACCCTTTGATGG-TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGAT
* * *
294903 CTCGATTATGAGTTTCACATCATATATATGATTGCCCGTTCTTGATTCTATTAAGAACTTCGCAG
306 CTCGATTATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAG
*
294968 TGCTTTGATTTAAGAGTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAAT
371 TGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAAT
* * * * *
295033 ATGTTTATGAAAGTAATGGAAACGATAGAATGTAGTTGAAGTGGATTATAAATGAAAGAAGTATG
436 ATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTG
295098 GTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAA
501 GTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAA
* *
295163 TGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGATAGAAATCAACAATATA
566 TGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATA
* * * * * * *
295228 ATAAAGACGGAATCGAAGTGATAGAGTGTGGAACGTGACTCACTAGTTATTGTAGAGC
631 CTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
295286 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCAAGACCGACAAGAAATCGATA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATA
* * * * *
295349 GATTTCTAATCCAAAAATTAAAATGAAAGCAATCTTTCAGAGAGTTTATAATGCAAAAAGTTCTT
64 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTT
* * *
295414 AGTACAAATGCCATGGAGGTGTCTATTTATAGTGTTGATAGGAACCATAT---GAGTTTTTACAA
128 AGTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAA
* ** * *
295476 TTAAAATAAAACAATGACCTATGTGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACAC
193 TTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCC
* **
295541 TTTG--GG--GCCCATGTAGATTGAAAATGGATTAATAATG--ATGATCTCGATTATGAGTTTTG
258 TTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCA
* * * * *
295600 GATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTAAATAT
323 GATCATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGAC
*
295665 TGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTACGAAAGTAA
387 TGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAA
* *
295730 TGGAAATGATAGAATGAATTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGATTG
452 TGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
* *
295795 ATTGGATGTAA-G-AAAT--TGAAGGATATTTGTGGTTGGCGTGGAGAATGATAGT-ATTCAAAG
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAG
* * * *
295855 GATGGATTGTGACCCTATAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGGAATCGA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
* *
295920 TGTGATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGC
647 AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
295962 TAGGAACCAA--CTCTAATAAGATGAAATGGATGAAAGCTT-TA-ATCGA-AAGAAACC-ATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
*
296021 GTTCTAATCCAAGAACTAAAAT----GCAATCATTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
* * * * * * * *
296082 ACAAATGTCGTGCAGGTTCCTATTTATAGTGTTTATAGGCAACAAATGAAGTGTTTTTACCATTA
131 ACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
** * * * *
296147 AAATAAAACAATCAGTTAAATACAATTTAATTCAATTAAATGGCTTGTCATTCTTCTAACCCTTA
196 AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
296212 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
261 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
296277 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
* *
296342 AATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATGGA
391 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* * * *
296407 AATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGGTTGTGGTTGATTG
456 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
* *
296472 GATGTAAGGAAAATGGTGAAGGATG-TTGTGGTCGGCGTGGACAATGATAGTTATTC-AAGGATG
521 GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATG
*
296535 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGGAATCGAAGTG
586 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
296600 ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
651 ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
296638 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * *
296703 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
*
296768 TACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
296833 AAAATAACACAATCACTTAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * * *
296898 TAATTGTTGCCCATGTAGATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCGG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCAG
* * * * * *
296962 ATCATATATATGATTTCCCAATCATGATTCTATTAAGAACTTCACAGTGCTTTGATTTAAGACTA
324 ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTG
* *
297027 AAAATGTACAAACAACTTTATAAGAAGGGAAATATGTATATTTAAATATGTTTATGAAAGTAATG
389 AAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATG
* * * *
297092 GAAACGATAGAATGTAGTTGAAGTGGATTGTAAATGAAGGAAGTATGGTGATGATAGTGGTTGAT
454 GAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGAT
* *
297157 TGGATGTAAGAAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAATTCAAAGGA
519 TGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGA
* *
297222 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAAC-A-ATACTAAAGATTGAATCAAAG
584 TGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
**
297285 TGATAGAGTCTGGAACGT-ACCC-CTAG-T-TAGTAGAG-
649 TGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
297320 TAGGAACCAAAGCTATAACAAGATGAAATGGATG-AA--TTCAAGACCGACAAGAAA-CGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * *
297381 -TTCTAATCCAAGAATTAAAATGAAAGCAATCTTTCAGAGAGTTTATTATGCAAAAGTTCTTAGT
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
* * * * *
297445 ACAAATGCCAT--AGGTGTCTATTTATAGTGTTGATGGGAACCATATGATGAG-TTTTACAATTA
131 ACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * * *
297507 AAATAAAACAATGACCT--ATGAAATTTAATTCAA-TAAATGAATTGTCATTCTTCTTACACTTT
196 AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
* * * *
297569 AATGGTTGCCCATGTAGATTGAAAATGGATTAATAATGATATGATCTAGATTATGAGTTT-GGAT
261 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
* * * * *
297633 C--ATATATGATTG-CCGATCTTGATTCTAGT-AGAAATTCACAGTTCTTTGATTGAAGATTGAA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
*
297694 AATGTACAAACAAAGTTAT-AGAAAGGG-AA-ATGTATATTTAAATATGTGTATGAAAGTAATGG
391 AATGTACAAACAACGTTATAAG-AAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
*
297756 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGGTAGTGGTTGATT
455 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
* * *
297821 GGATGTAACGAAAATGGTGAAGGATGTTTTTGGTTGGCGTGGAGAATG--AGT-ATTCAAAGGAT
520 GGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
* * * *
297883 -GATTGTGACCCTCTAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGGAATCGATGT
585 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
*
297947 GATAGAGGGT--AACGTAACACACTAGCTATAGTAGAGC
650 GATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * *
297984 TAGGAACCAACTCTATAA-TA-A-GAAATGGATGAAAGCTTTAAGATCG--AAGAAA-CGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
*
298043 GTTCTAATCCAAGAACTAAAATGAATGCAATCTTTC-AAGAGTTTATTATGAAAAAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAG
* * * * *
298107 TACAAATGTCGTGCAGGTTCCTATTTATAGTGTTTATAGGCA-CAAATG-A-AGTTTTTA-AATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
** *
298168 AAAAT--AACAATCATGT-AATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * *
298230 AGATGGTTACTCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
298295 TCATATATATGA-TGCCCGATC-TGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
325 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
* * *
298358 AAATGTACAAACAACATTAGAAGAAGGGAAATATGTATATTTAAATATTTGTATGAAAGTAATGG
390 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
* *
298423 AAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATTGTGGTTGATT
455 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
*
298488 -GATGTAAGGAAAATGGT-AAGGATGTTT-T-GTTGGAGTGGACAATGATAGT-ATTCAAAGGAT
520 GGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
298548 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
585 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
298613 GATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
650 GATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
298652 TAGGAACCAACGCTATAACAAGTTGAAATGGATGAAAGCTTCAAGTTCGACAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * * *
298717 GTTATAATCCAAGAACTAAAATGAATGGAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
* * *
298782 AACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATA-GAAGAGTTTTTGCAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * * *
298846 -AAATAACACAATCACTTAAATGTAATTTAATTC-ATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* * * *
298909 TAATGGTTGCCCATGTAGATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCGG
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCAG
* *
298973 ATCATATATATGATTTG-CCGATCTTGATTC--------A---CGCAGTGCTCTGATTGAAGACT
324 ATCATATATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACT
*
299026 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGCAAT
388 GAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
* *
299091 GAAAATGATAGAAT-AAGTTGACA-TGGATTGTAAATG--A-AAGTGTGGTGAT-ATGGTGGTTG
453 GGAAATGATAGAATGAAGTTGA-AGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTG
* * * *
299150 ATTGGATGTAACGATAATGGTGAAGGATGTTTGTGGTTGGCATGGACAATGATAATAATTCAAAG
517 ATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAG
* * * *
299215 GATGGATTGTAACCCTCTAACTATATATGAGTTAGATACCATCAATATACTAAAGATGGAAT-TA
582 GATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGA
* *
299279 TAGTGATAGAGGGTGGAACGTGACCCACTAGCTATTGTAGAGC
647 -AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * * *
299322 TAGGAACCAAAGCTATAACAAGATGAAATGGATGACGAA--TTCCAGACCGACAAGAAACCTATA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATA
* * * * * *
299385 GAGTTTTATTCCAATAACT-AAATTAATGCAATCTTTCAGAGAGTTTATTATGCAAAAAGGTTCT
64 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAA-GTTCT
* *
299449 TAGTACAAATGACAT-GA-GTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGATTTTACA
127 TAGTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACA
* * *
299512 ATTAAAATAAATC-ATGACCTAAATG-AATTTAA-TCAATTAAATGA-TTGTCATTC-TCTTACA
192 ATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACC
* * * *
299572 CTTTGATGGGTGCCCATGTAGATT-AAAATGGATTAATAATGTTATGATCTCGATTATGAGTTTT
257 CTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTC
* * * * *
299636 GGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGACGA
322 AGATCATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTTAAGA
* *
299701 CTGGAAATGTACAAACAATGTTATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
386 CTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTA
*
299765 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCT-ATGATAGTGGTT
451 ATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTT
* * *
299829 GATTGGACGTAAGG--AATGGTG-AGGATGTTT-AGGTTGGTG-GGACAATGATAG-AA-TCAAA
516 GATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAA
* * *
299887 GGATGGATTGTGA-CCTCTAACTATATTTGTGTTAGAAACCATCAATAT-CTAAAGATGGAATC-
581 GGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCG
*
299949 AAGTTATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
646 AAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* * * *
299992 TAGGAACCAACACTATAACAAGATGAAATAGATGAAGGCTTCAAGA-C-TCAAGAAACCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* **
300055 GTTCTAATCCAAGAACT-AAATG-AAGCAATCTTTCAAAGAGTTTATTATGCAAAAGTTCCAAGT
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
* *
300118 ACAAATG--ATGG-GGTGCCTATTTATAGTGTTGATAGGCACTATATGAATAGTTTTTACAATTA
131 ACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
**
300180 AAAT--AACAATCTTCTAAA-GCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
196 AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
* * * *
300242 GATAGTT-CCCAT-TAGATTTAAAATGGATTAATAATGATATGATCTTGATTATGAGTTTCAGAT
261 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
* *
300305 CATATATATGATTACCCAATCTTGATT-TAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
326 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
*
300369 AATGTACAAACAA-ATTATAAG-A--GAAATATGTATATTTAAATA--TGTAT-AAAGTAATGG-
391 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
* *
300426 AAT-AT--AATGAAGCTGAAGTGAATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
456 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
* *
300488 GATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCATAGGATG
521 GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATG
*
300553 TATTGTGACCCTCTAACTATATATGA-TTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
586 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
* *
300617 ATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGT
651 ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
300655 TAGGAACCAAAGCTATAACAAGATGAAAT-GATGACGAA--TTCAAGATCGACAAGAAATCGATA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATA
* *
300717 GAGTTCTAATCCAAGAA-TTAAATGAAAGC-ATCTTTCAGAGAGTTTATTA-GCAAAAAGTTCTT
64 GAGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTT
* * * * *
300779 AGTAC-AATGCCATGGAGGTGTCTATTTATAGTGTTGATGGGAACCATAT-ATGAGTTTTTACAA
128 AGTACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAA
* *
300842 TTAAAATAAAATAATCAAGACC-AATATG-AATTTAATTCAATTAAATGATTTGTCATTCTTC-T
193 TTAAAATAAAACAATC---ACCTAA-ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTT
* *
300904 ACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATTAATAATGATATGATCTAGATTATGAGT
254 ACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGT
** * *
300969 TTTGGATCATATATATGATTG-CCGATCTTGATTCTAGTAAGAAATT--CAGTGCTTTGATTGAA
319 TTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAA
301031 GACTGAAAATGTACAAACAACGTTATAAGAA-GG-AATATGTATATTTAAATATGTGTATGAAAG
384 GACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAG
301094 TAATGGAAATGATAGAATG-AGTTGAAGTGGA-TGT-AATGAAAGAAGTGTGGTGAT-ATAGTGG
449 TAATGGAAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGG
* *
301155 TTGATTGGATGTAAGGAAAACGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAATTCA
514 TTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCA
301220 AAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT-CTAAAGATGGAAT
579 AAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAAT
* *
301284 CAAAGTGATAGAGGGTGGAACGT-AGCCACTAGCTATAGTAGAGC
644 CGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
*
301328 TA-GAACC-ACGCTAT-ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAATCGATAGA
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
* * * *
301390 GTTCTAATCCAAGAACT-AAATGAATGCAATCTTTTAAATAGTTTATTATGAATGAAGTTCTTAG
66 GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAG
* *
301454 TACAAATGTCGTGGAGGTGCCTATTTATAGTG-T--TAGGCACCATATGAAGATTTTTTACAATT
130 TACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
*
301516 AAAATAAAACAATCACCTAAATGCAA-TTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTT
195 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTT
* *
301580 TGATGGTTGCCCAT-TAGATTGAAAATGGATGAATAATGATACGATCTCAATTATGA-TTTCAGA
260 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
** * *
301643 TCAGGTATATGATTGCCCGATCTTGATTCTAGTAAG-ACTTCACAGTGC-TTGATTTAAGAATGA
325 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGA
301706 AAATGTAC-AAC-AC--T-TAAGAAGGG-AATA-G---ATTTAAATATGTGTATGAAAGTAAT-G
390 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
* *
301760 -AATGATAGAAT-CAG-TGAA-TGGATTGTAAATGAAAGAAGTGTGGTGATAATAGTGGTTGATT
455 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
*
301821 GGATGTAAGGAAAATGGTGAAGGATGTGTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
520 GGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
301886 GGATTGTGACCCTCTAAC--TATATGAGTTAGAAACCAACACAATATACTAAAGATGGAATCGAA
585 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACC-A-ACAATATACTAAAGATGGAATCGAA
301949 GTGATAGAGGGTGGAACGT-ACCCACTAGCTATAGTAGAGC
648 GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
* *
301989 TA-GAACCAACGATATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAGAATCGATAG
1 TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGA-AACCGATAG
* *
302053 AGTTCTAATCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATG-AAAAGTTC
65 AGTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTC
302113 AACGATATAA
Statistics
Matches: 14064, Mismatches: 2223, Indels: 2336
0.76 0.12 0.13
Matches are distributed among these distances:
653 36 0.00
654 25 0.00
655 2 0.00
656 9 0.00
657 23 0.00
658 42 0.00
659 97 0.01
660 169 0.01
661 178 0.01
662 183 0.01
663 399 0.03
664 234 0.02
665 448 0.03
666 241 0.02
667 175 0.01
668 224 0.02
669 279 0.02
670 602 0.04
671 258 0.02
672 240 0.02
673 253 0.02
674 352 0.03
675 214 0.02
676 984 0.07
677 492 0.03
678 1144 0.08
679 177 0.01
680 247 0.02
681 205 0.01
682 134 0.01
683 27 0.00
684 21 0.00
685 44 0.00
686 233 0.02
687 491 0.03
688 802 0.06
689 2246 0.16
690 365 0.03
691 7 0.00
692 5 0.00
693 5 0.00
694 10 0.00
695 4 0.00
696 2 0.00
697 1 0.00
698 1 0.00
700 7 0.00
701 4 0.00
702 13 0.00
703 1 0.00
704 5 0.00
705 7 0.00
706 7 0.00
707 8 0.00
708 7 0.00
709 1 0.00
710 2 0.00
713 2 0.00
714 3 0.00
715 11 0.00
716 12 0.00
717 11 0.00
718 13 0.00
719 7 0.00
720 19 0.00
721 19 0.00
722 11 0.00
723 10 0.00
724 13 0.00
725 25 0.00
726 33 0.00
727 29 0.00
728 29 0.00
729 31 0.00
730 25 0.00
731 26 0.00
732 31 0.00
733 19 0.00
734 28 0.00
735 17 0.00
736 11 0.00
737 18 0.00
738 13 0.00
739 12 0.00
740 3 0.00
741 5 0.00
742 7 0.00
743 9 0.00
744 13 0.00
745 20 0.00
746 18 0.00
747 12 0.00
748 11 0.00
749 7 0.00
750 9 0.00
751 18 0.00
752 20 0.00
753 18 0.00
754 31 0.00
755 20 0.00
756 19 0.00
757 31 0.00
758 38 0.00
759 21 0.00
760 12 0.00
761 7 0.00
762 1 0.00
763 7 0.00
764 13 0.00
765 11 0.00
766 8 0.00
767 12 0.00
768 21 0.00
769 18 0.00
770 19 0.00
771 16 0.00
772 9 0.00
773 20 0.00
774 11 0.00
775 19 0.00
776 24 0.00
777 17 0.00
778 11 0.00
779 36 0.00
780 12 0.00
781 19 0.00
782 23 0.00
783 17 0.00
784 24 0.00
785 13 0.00
786 11 0.00
787 4 0.00
788 14 0.00
789 14 0.00
790 17 0.00
791 8 0.00
792 3 0.00
793 4 0.00
794 8 0.00
795 10 0.00
796 12 0.00
797 10 0.00
798 11 0.00
799 12 0.00
801 8 0.00
802 14 0.00
803 14 0.00
804 11 0.00
805 5 0.00
806 2 0.00
807 7 0.00
808 6 0.00
809 4 0.00
810 1 0.00
811 7 0.00
812 7 0.00
813 4 0.00
814 11 0.00
815 6 0.00
816 3 0.00
817 1 0.00
818 7 0.00
819 6 0.00
820 3 0.00
821 7 0.00
822 3 0.00
823 2 0.00
824 4 0.00
825 1 0.00
826 5 0.00
827 7 0.00
828 7 0.00
829 4 0.00
830 1 0.00
831 1 0.00
832 3 0.00
833 3 0.00
834 1 0.00
835 5 0.00
836 5 0.00
837 5 0.00
838 5 0.00
839 14 0.00
840 13 0.00
841 12 0.00
842 7 0.00
843 15 0.00
844 20 0.00
845 5 0.00
846 11 0.00
847 14 0.00
850 2 0.00
851 10 0.00
852 2 0.00
853 1 0.00
854 4 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
TAGGAACCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA
GTTCTAATCCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGT
ACAAATGTCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTT
GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAA
AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
GATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATG
GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
ATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC
Found at i:296944 original size:687 final size:688
Alignment explanation
Indices: 291766--302112 Score: 14042
Period size: 670 Copynumber: 15.4 Consensus size: 688
291756 TGATTCTAAA
* * *
291766 TGGTTGATTGGATGTAAGGAAAATTGTGAAGGATGTTTGTGGTCGACGTGGACAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
*
291831 TCAAAGGACGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* *
291895 AAT-TAAGTGATAGAGGGTGGAACGTAACCC-CTAGCTATAGTAGAGCTAGGAACTAACGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* *
291958 ACAAGATGAAATGGATGAAAGCTTCAAGATCGATAAG-AACCGATAGATTTTCTAATCCAAGAAC
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGA-GTTCTAATCCAAGAAC
* * *
292022 TAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTACAAATATCGTGGAG
260 TAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAA-AAGTTCTTAGTACAAATGTCATGGAG
* * *
292087 TTGCCTATTTATAGTGTTGATAGGCACCATATGAA-AGTTTTTAAAATTAAAATAAAACAATAAC
324 GTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCAC
* * * *
292151 CTAAATGCAGTTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTGATGGTTGTCCATGT
389 CTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGT
* *
292216 AGATTGAAAATGGATGAATAATGATATGGTCTCGATTATGAGTTTCGGATCATATATATGATTGG
454 AGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGC
* * * *
292281 CCGATCTTGATTCTAGAAAGAACTTCACAATGCTTTGATTTAACACTAAAAATGTACAAACAACG
519 CCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACG
* *
292346 TTATAAG-AGGGAAATATGTATA-TTAAATATGTGTATGTAGGTAATGGAAATGATAGAATGAAG
584 TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAG
* *
292409 TTGAAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGAT-T
649 TTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* *
292448 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTTAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
292513 TCAAAGGATGGATTGTGACCCTCTAAC--TATATGAGTT--AAACCAACAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
292574 AATCGAAGTGATAGAGGGT--AACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* *
292637 ACGAGATG-AATGGATGAAAACTTCAAGATCGACAAGAAACCG--AGAGTTCTAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * * *
292699 AAAATGAAAGCAATCTTT-AAAGAGTTTATTATGAATGAAGTTCTTAGTACAAATGACGTGGAGG
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAGTACAAATGTCATGGAGG
* * * *
292763 TGCCTATTTATAGTGTTGATAGGCACTATTTGAAGAGTTTTTACAATTAAAATAACACAATCACT
325 TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACC
* *
292828 TAAATGTAATTTAATTCAATT-CA--ACTTGTCATTCTTC-TACCCTTTAATGGTTGCCCATGTA
390 TAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTA
* * * *
292889 GATTGAAAATGGAAGAATATTTG-TATGATCTCGGTTATGAGTTTCGGATCATATATATAATTTG
455 GATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCGGATCATATATATGA-TTG
* * *
292953 -CCGATCTTGA---T--T-----C-TCGCAGTGCTCTGATTGAAGACTGAAAATGTACAAACAAC
518 CCCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAAC
*
293006 GTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT-G-AATGATAGAATAAA
583 GTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAA
* * *
293069 GTTGACGTGGATTGTAAATGAAAGAAGTGTGGTGATAATAT
648 GTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * *
293110 TGGTTGATTGGATGTAATGAAAATGGTGAAGGATATTTGTGGTTGGCGTGGAGAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* *** * *
293175 TC-AAGGATGGATAGTGAATGTCTAGA-TATATATGTGTTAGGAACCAAC-A-ATACTAAAGATG
66 TCAAAGGATGGATTGTGACCCTCTA-ACTATATATGAGTTAGAAACCAACAATATACTAAAGATG
* * * *
293236 GAATCGATGTGATAGAGGCTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAACCAACACTAT
130 GAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTAT
* ** * *
293301 AACAAGATGAAATGGACGAATCCTTCAAGACCTACAAGAAACCGATAGAGTTCTAATCCAAGAAC
195 AACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAAC
* **
293366 TAAAATGAAAGCAATAATTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATG-CAATGGA
260 TAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAGTACAAATGTC-ATGGA
**
293430 GGCACCTATTTATAGTGTTGAT--GCACCATATGAAGAGTTTTTTACAATTAAAAT-AAACAATC
323 GGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAG-TTTTTACAATTAAAATAAAACAATC
* * * * *
293492 TCCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTC-TAACCTTTGATGGTTTCCCAT
387 ACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCAT
* * * *
293556 GAAGATTGAAAATGGATGAATAATGTTATGATCTCGATTATGAGTTTCAGATCATATATAAGATT
452 GTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATT
* **
293621 GTCCGAAATTGATTCTA-TAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAA
517 GCCCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAA
* * * * *
293685 CGTTATAAGAATGGTAATATGTATATTTAAATATCTGTATGTAGGTAATGGAAATGAT---A-GA
582 CGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGA
*
293746 AGTTGAAGTGGATTGTAAAAGAAAGAA--GTGGTGATGATAG
647 AGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * *
293786 TGG-T--TTGGATGTAATG-AAATGGTGAAGGATGTTTGTGGTTTGCATGG--AATGATAGT-AT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* * * * * *
293844 TCAATGGATGGATTATGACCTTATAACTATATATGAGTTAGGAACCAACAATATACT-AACATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
*
293908 AATCGAAGTGATAGAGGGTGGAACGTAA-CC-CTAGCTATAGTAGAGCTAGGAACCAATGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
*
293971 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCTATAGAGTTCT-ATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * *
294035 AAAATGAATGCAAT-TTTC-AAGA-TTTATTATGAAAAAATTCTTACTA-AAA-ATCATGGAGGT
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGTACAAATGTCATGGAGGT
* * * * *
294095 -TCT-TATATAGTGTTGATAGGAACCACATGAAGAGTTTTTACAATTAAAAT-AAA-AATCACCC
326 GCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCT
* *
294156 AAATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTAATGGTTTCCCATGTAG
391 AAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTAG
* * * *
294221 ATTG-AAAT-G--G-ATAATG-TATGATCTCGGTTATGAATTTCAGATCATATATATGATTG-TC
456 ATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCC
* * * * *
294279 AATCTTGATTCT--T--G--C-T----GTGCTCTGATTGAAGAATTAAAATGTACAAACAACG-T
521 GATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTT
* *
294332 ATAAGAA-GGAAATATGTATATTTAAATATGTGTATGAAAGTAAT-GAAATGATAGAATAAATTT
586 ATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTT
* * *
294395 GACGTGGATTGTAAATGAATGAAGTGTGCTGATGATAG
651 GAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * * *
294433 TGGTTGATTGAATGTAA-CAAAATGGTGAAGGATGTTTGTGGTT-G-GTGTAGAATG--AGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* *
294493 TCAAATGATGGATTGTGA--ATCTAACTATATATGAGTTAG-AACCAACAATATACT-AAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
*
294554 AATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGC--TA-TAGAGCTAGGAACCAACGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* * *
294616 ACAAGATGAAATGGATG-AAGCCTTCAAGACCTACAAGAGACCGATAGAGTTCTAATCCAAGAAC
196 ACAAGATGAAATGGATGAAAG-CTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAAC
* ** *
294680 TAAAATGAAAGCAATAATTCAAAGAGTTTATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAG
260 TAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAGTACAAATGTCATGGAG
* * *
294745 GTGCATATTTATAGTGTTGATAGGCACCATATGAATAGTTTTTACAATTAAAATAAAACAATC-T
324 GTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCAC
* * * * *
294809 CT-AATACAATTTAATTCAATTAAATGACTTTTCATTCTTCTAACCATTTGATGGATT-CCCATG
389 CTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGG-TTGCCCATG
* **
294872 AAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCACATCATATATATGATTG
453 TAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTG
* * * *
294937 CCCGTTCTTGATTCTATTAAGAACTTCGCAGTGCTTTGATTTAAGAGTGAAAATGTACAAACAAC
518 CCCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAAC
* * *
295002 GTTATAAGAAGGGAAATATGTATATTTAAATATGTTTATGAAAGTAATGGAAACGATAGAATGTA
583 GTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAA
* *
295067 GTTGAAGTGGATTATAAATGAAAGAAGTATGGTGATGATAG
648 GTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
295108 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* * * *
295173 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGATAGAAATCAACAATATAATAAAGACGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* * * * * *
295238 AATCGAAGTGATAGAGTGTGGAACGTGACTCACTAGTTATTGTAGAGCTAGGAACCAAAGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* * * *
295303 ACAAGATGAAATGGATGACGAA--TTCAAGACCGACAAGAAATCGATAGATTTCTAATCCAAAAA
196 ACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAA
* * * * *
295366 TTAAAATGAAAGCAATCTTTCAGAGAGTTTATAATGCAAAAAGTTCTTAGTACAAATGCCATGGA
259 CTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAGTACAAATGTCATGGA
* * *
295431 GGTGTCTATTTATAGTGTTGATAGGAACCATAT---GAGTTTTTACAATTAAAATAAAACAATGA
323 GGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCA
** * * *
295493 CCTATGTGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACAC-TT--TGG-GGCCCATG
388 CCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATG
* *
295554 TAGATTGAAAATGGATTAATAATG--ATGATCTCGATTATGAGTTTTGGATCATATATATGATTG
453 TAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTG
* * * *
295617 CCCGATCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTAAATATTGAAAATGTACAAACAA
518 CCCGATCTTGATTCTAGTAAG-AACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAA
*
295682 CGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTACGAAAGTAATGGAAATGATAGAATGA
582 CGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGA
*
295747 ATTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
647 AGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * *
295789 TGATTGATTGGATGTAA-G-AAAT--TGAAGGATATTTGTGGTTGGCGTGGAGAATGATAGT-AT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* * * *
295849 TCAAAGGATGGATTGTGACCCTATAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* * *
295914 AATCGATGTGATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAA--CTCTA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* *
295977 ATAAGATGAAATGGATGAAAGCTT-TA-ATCGA-AAGAAACC-ATAGAGTTCTAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * *
296038 --AA--AATGCAATCATTCAAAGAGTTTATTATGAAAAAGTTCTTAGTACAAATGTCGTGCAGGT
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGTACAAATGTCATGGAGGT
* * * * * * **
296099 TCCTATTTATAGTGTTTATAGGCAACAAATGAAGTGTTTTTACCATTAAAATAAAACAATCAGTT
326 GCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCT
* * *
296164 AAATACAATTTAATTCAATTAAATGGCTTGTCATTCTTCTAACCC-TTAGATGGTTGCCCATGTA
391 AAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTA-ATGGTTGCCCATGTA
*
296228 GATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCC
455 GATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCC
* *
296293 CGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACAT
520 CGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGT
* *
296358 TATAAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATGGAAATGATAGAATCAAGT
585 TATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGT
* * *
296423 TGAAGTGGATTGTAAATGAAAGAAGTATGGTGATGGTTG
650 TGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* *
296462 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATG-TTGTGGTCGGCGTGGACAATGATAGTTAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
*
296526 TC-AAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAATATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
296590 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
296655 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * * *
296720 AAAATGAATGCAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTTGTACAAATGTCGTGGAGG
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAGTACAAATGTCATGGAGG
* *
296785 TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAACACAATCACT
325 TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACC
* * *
296850 TAAATGTAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTAATTGTTGCCCATGTA
390 TAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTA
* * *
296915 GATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCGGATCATATATATGATTTC
455 GATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGC
* * * * *
296979 CCAATCATGATTCTATTAAGAACTTCACAGTGCTTTGATTTAAGACTAAAAATGTACAAACAACT
519 CCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACG
* * *
297044 TTATAAGAAGGGAAATATGTATATTTAAATATGTTTATGAAAGTAATGGAAACGATAGAATGTAG
584 TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAG
* *
297109 TTGAAGTGGATTGTAAATGAAGGAAGTATGGTGATGATAG
649 TTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* *
297149 TGGTTGATTGGATGTAAGAAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGACAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
*
297214 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAAC-A-ATACTAAAGATTG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* ** *
297277 AATCAAAGTGATAGAGTCTGGAACGT-ACCC-CTAG-T-TAGTAGAG-TAGGAACCAAAGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* *
297337 ACAAGATGAAATGGATG-AA--TTCAAGACCGACAAGAAA-CGATAGA-TTCTAATCCAAGAATT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * * *
297397 AAAATGAAAGCAATCTTTCAGAGAGTTTATTATGCAAAAGTTCTTAGTACAAATGCCAT--AGGT
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGTACAAATGTCATGGAGGT
* * * * *
297460 GTCTATTTATAGTGTTGATGGGAACCATATGATGAG-TTTTACAATTAAAATAAAACAATGACCT
326 GCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCT
* * *
297524 --ATGAAATTTAATTCAA-TAAATGAATTGTCATTCTTCTTACACTTTAATGGTTGCCCATGTAG
391 AAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTAG
* *
297586 ATTGAAAATGGATTAATAATGATATGATCTAGATTATGAGTTT-GGATC--ATATATGATTG-CC
456 ATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCC
* * * * *
297647 GATCTTGATTCTAGT-AGAAATTCACAGTTCTTTGATTGAAGATTGAAAATGTACAAACAAAGTT
521 GATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTT
297711 AT-AGAAAGGG-AA-ATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGT
586 ATAAG-AAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGT
*
297773 TGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGGTAG
650 TGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * *
297812 TGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTTTGGTTGGCGTGGAGAATG--AGT-AT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* * *
297874 TCAAAGGAT-GATTGTGACCCTCTAACTATATATTAGTTTGGAACCAACAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* * *
297938 AATCGATGTGATAGAGGGT--AACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACTCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* *
298001 A-TA-A-GAAATGGATGAAAGCTTTAAGATCG--AAGAAA-CGATAGAGTTCTAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* *
298060 AAAATGAATGCAATCTTTC-AAGAGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGG
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAGTACAAATGTCATGGAGG
* * * **
298124 TTCCTATTTATAGTGTTTATAGGCA-CAAATG-A-AGTTTTTA-AATTAAAAT--AACAATCATG
325 TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACC
* * *
298183 T-AATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCC-TTAGATGGTTACTCATGT
390 TAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTA-ATGGTTGCCCATGT
*
298246 AGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGA-TGC
454 AGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGC
* *
298310 CCGATC-TGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACA
519 CCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACG
* * *
298374 TTAGAAGAAGGGAAATATGTATATTTAAATATTTGTATGAAAGTAATGGAAATGATAGAATCAAG
584 TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAG
*
298439 TTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATTG
649 TTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
*
298479 TGGTTGATT-GATGTAAGGAAAATGGT-AAGGATGTTT-T-GTTGGAGTGGACAATGATAGT-AT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
298539 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
298604 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* * *
298669 ACAAGTTGAAATGGATGAAAGCTTCAAGTTCGACAAGAAACCGATAGAGTTATAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * * * *
298734 AAAATGAATGGAATCTTTTAAAGAGTTTATTATGAATGAAGTTCTTAGAACAAATGTCGTGGAGG
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAGTACAAATGTCATGGAGG
* * *
298799 TGCCTATTTATAGTGTTGATAGGCACCATA-GAAGAGTTTTTGCAATT-AAATAACACAATCACT
325 TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACC
* *
298862 TAAATGTAATTTAATTC-ATTCAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTA
390 TAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTA
* *
298926 GATTGAAAATGGATGAATATTTG-TATGATCTCGGTTATGAGTTTCGGATCATATATATGATTTG
455 GATTGAAAATGGATGAATA-ATGATATGATCTCGATTATGAGTTTCGGATCATATATATGA-TTG
* * *
298990 -CCGATCTTGATTC--------A---CGCAGTGCTCTGATTGAAGACTGAAAATGTACAAACAAC
518 CCCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAAC
* *
299043 GTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGCAATGAAAATGATAGAAT-AA
583 GTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAA
*
299107 GTTGACA-TGGATTGTAAATG--A-AAGTGTGGTGAT-ATGG
648 GTTGA-AGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * * *
299144 TGGTTGATTGGATGTAACGATAATGGTGAAGGATGTTTGTGGTTGGCATGGACAATGATAATAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* * *
299209 TCAAAGGATGGATTGTAACCCTCTAACTATATATGAGTTAGATACCATCAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* * * *
299274 AAT-TATAGTGATAGAGGGTGGAACGTGACCCACTAGCTATTGTAGAGCTAGGAACCAAAGCTAT
131 AATCGA-AGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTAT
* * * * * *
299338 AACAAGATGAAATGGATGACGAA--TTCCAGACCGACAAGAAACCTATAGAGTTTTATTCCAATA
195 AACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGA
* * *
299401 ACT-AAATTAATGCAATCTTTCAGAGAGTTTATTATGCAAAAAGGTTCTTAGTACAAATGACAT-
258 ACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAA-GTTCTTAGTACAAATGTCATG
* *
299464 GA-GTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGATTTTACAATTAAAATAAATC-AT
321 GAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAAT
* * * *
299527 GACCTAAATG-AATTTAA-TCAATTAAATGA-TTGTCATTC-TCTTACACTTTGATGGGTGCCCA
386 CACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCA
* * *
299588 TGTAGATT-AAAATGGATTAATAATGTTATGATCTCGATTATGAGTTTTGGATCATATATATGAT
451 TGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGAT
* * * *
299652 TGCCCGATCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGACGACTGGAAATGTACAAAC
516 TGCCCGATCTTGATTCTAGTAAG-AACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAAC
*
299717 AATGTTATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAAT
580 AACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAAT
*
299781 GAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGCT-ATGATAG
645 GAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* * *
299824 TGGTTGATTGGACGTAAGG--AATGGTG-AGGATGTTT-AGGTTGGTG-GGACAATGATAG-AA-
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* * *
299882 TCAAAGGATGGATTGTGA-CCTCTAACTATATTTGTGTTAGAAACCATCAATAT-CTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* *
299945 AATC-AAGTTATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACACTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
* * *
300009 ACAAGATGAAATAGATGAAGGCTTCAAGA-C-TCAAGAAACCGATAGAGTTCTAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* **
300072 -AAATGAA-GCAATCTTTCAAAGAGTTTATTATGCAAAAGTTCCAAGTACAAATG--ATGG-GGT
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGTACAAATGTCATGGAGGT
* * **
300132 GCCTATTTATAGTGTTGATAGGCACTATATGAATAGTTTTTACAATTAAAAT--AACAATCTTCT
326 GCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCT
* *
300195 AAA-GCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTGATAGTT-CCCAT-TAG
391 AAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTAG
* * * * *
300257 ATTTAAAATGGATTAATAATGATATGATCTTGATTATGAGTTTCAGATCATATATATGATTACCC
456 ATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCC
* * *
300322 AATCTTGATT-TAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAA-ATT
521 GATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTT
*
300385 ATAAG-A--GAAATATGTATATTTAAATA--TGTAT-AAAGTAATGG-AAT-AT--AATGAAGCT
586 ATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTT
*
300440 GAAGTGAATTGTAAATGAAAGAAGTGTGGTGATGATAG
651 GAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
*
300478 TGGTTGATTGGATGTAAGGAAAATGCTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
* *
300543 TCATAGGATGTATTGTGACCCTCTAACTATATATGA-TTAGAAACCAACAATATACTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* * *
300607 AATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGTTAGGAACCAAAGCTATA
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
*
300672 ACAAGATGAAAT-GATGACGAA--TTCAAGATCGACAAGAAATCGATAGAGTTCTAATCCAAGAA
196 ACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAA
* * * *
300734 -TTAAATGAAAGC-ATCTTTCAGAGAGTTTATTA-GCAAAAAGTTCTTAGTAC-AATGCCATGGA
259 CTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AAAAAGTTCTTAGTACAAATGTCATGGA
* * * * *
300795 GGTGTCTATTTATAGTGTTGATGGGAACCATAT-ATGAGTTTTTACAATTAAAATAAAATAATCA
323 GGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATC-
* *
300859 AGACC-AATATG-AATTTAATTCAATTAAATGATTTGTCATTCTTC-TACCCTTTGATGGTTGCC
387 --ACCTAA-ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCC
* * *
300921 CATGTAGATTGAAAATGGATTAATAATGATATGATCTAGATTATGAGTTTTGGATCATATATATG
449 CATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATG
* *
300986 ATTG-CCGATCTTGATTCTAGTAAGAAATT--CAGTGCTTTGATTGAAGACTGAAAATGTACAAA
514 ATTGCCCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAA
301048 CAACGTTATAAGAA-GG-AATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAA
579 CAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAA
301111 TG-AGTTGAAGTGGA-TGT-AATGAAAGAAGTGTGGTGAT-ATAG
644 TGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
* *
301152 TGGTTGATTGGATGTAAGGAAAACGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
301217 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT-CTAAAGATGG
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
* *
301281 AATCAAAGTGATAGAGGGTGGAACGT-AGCCACTAGCTATAGTAGAGCTA-GAACC-ACGCTAT-
131 AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
*
301342 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAATCGATAGAGTTCTAATCCAAGAACT
196 ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
* * * *
301407 -AAATGAATGCAATCTTTTAAATAGTTTATTATGAATGAAGTTCTTAGTACAAATGTCGTGGAGG
261 AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA-AAAGTTCTTAGTACAAATGTCATGGAGG
*
301471 TGCCTATTTATAGTG-T--TAGGCACCATATGAAGATTTTTTACAATTAAAATAAAACAATCACC
325 TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACC
* *
301533 TAAATGCAA-TTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTGATGGTTGCCCAT-TA
390 TAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTA
* * * **
301596 GATTGAAAATGGATGAATAATGATACGATCTCAATTATGA-TTTCAGATCAGGTATATGATTGCC
455 GATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCC
*
301660 CGATCTTGATTCTAGTAAG-ACTTCACAGTGC-TTGATTTAAGAATGAAAATGTAC-AAC-AC--
520 CGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGT
*
301719 T-TAAGAAGGG-AATA-G---ATTTAAATATGTGTATGAAAGTAAT-G-AATGATAGAAT-CAG-
585 TATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGT
*
301774 TGAA-TGGATTGTAAATGAAAGAAGTGTGGTGATAATAG
650 TGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
*
301812 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTGTGTGGTTGGCGTGGACAATGATAGTAAT
1 TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
301877 TCAAAGGATGGATTGTGACCCTCTAAC--TATATGAGTTAGAAACCAACACAATATACTAAAGAT
66 TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACC-A-ACAATATACTAAAGAT
*
301940 GGAATCGAAGTGATAGAGGGTGGAACGT-ACCCACTAGCTATAGTAGAGCTA-GAACCAACGATA
129 GGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTA
*
302003 TAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAGAATCGATAGAGTTCTAATCCAAGA
194 TAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGA-AACCGATAGAGTTCTAATCCAAGA
*
302068 ACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATG-AAAAGTTC
258 ACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTC
302113 AACGATATAA
Statistics
Matches: 8607, Mismatches: 742, Indels: 651
0.86 0.07 0.07
Matches are distributed among these distances:
641 8 0.00
642 33 0.00
643 8 0.00
644 36 0.00
645 91 0.01
646 74 0.01
647 39 0.00
648 16 0.00
649 28 0.00
650 50 0.01
651 4 0.00
652 9 0.00
653 38 0.00
654 136 0.02
655 49 0.01
656 20 0.00
657 24 0.00
658 37 0.00
659 94 0.01
660 243 0.03
661 348 0.04
662 278 0.03
663 459 0.05
664 246 0.03
665 504 0.06
666 264 0.03
667 202 0.02
668 297 0.03
669 418 0.05
670 713 0.08
671 256 0.03
672 272 0.03
673 284 0.03
674 370 0.04
675 257 0.03
676 451 0.05
677 189 0.02
678 119 0.01
679 199 0.02
680 231 0.03
681 183 0.02
682 180 0.02
683 39 0.00
684 69 0.01
685 8 0.00
686 69 0.01
687 583 0.07
688 34 0.00
689 46 0.01
690 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (688 bp):
TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAAT
TCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGG
AATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATA
ACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACT
AAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAGTTCTTAGTACAAATGTCATGGAGGT
GCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCT
AAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACCCTTTAATGGTTGCCCATGTAG
ATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCC
GATCTTGATTCTAGTAAGAACTTCACAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTT
ATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTT
GAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAG
Found at i:302212 original size:114 final size:116
Alignment explanation
Indices: 301995--302222 Score: 433
Period size: 114 Copynumber: 2.0 Consensus size: 116
301985 GAGCTAGAAC
301995 CAACGATATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAGAATCGATAGAGTTCTA
1 CAACGATATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAGAATCGA-AGAGTTCTA
302060 ATCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAAGTT
65 ATCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAAGTT
302112 CAACGATATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGA-AATCG-AGAGTTCTAA
1 CAACGATATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAGAATCGAAGAGTTCTAA
302175 TCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAA
66 TCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAA
302223 AAGTTCTTAG
Statistics
Matches: 111, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
114 58 0.52
116 5 0.05
117 48 0.43
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (116 bp):
CAACGATATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAGAATCGAAGAGTTCTAA
TCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAAGTT
Found at i:307546 original size:689 final size:688
Alignment explanation
Indices: 303511--308432 Score: 7463
Period size: 687 Copynumber: 7.2 Consensus size: 688
303501 TGAACCCGAT
* * * * * * * *
303511 AAAGTTATTAGTACAAATGTCGTGCAGGTTCCTATTTATAGTGTTTATAGGCAACAAATGAAGTG
1 AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAG
* * *
303576 TTTTTACTATTAAAATAAAACAATTAGCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTC
66 TTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTC
* * *
303641 TTCTAACCCTTTGATTGTTGCCCATGTAGATTGAAAATGGATAAATAATGATATGATCTCGATTA
131 TTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTA
303706 TGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGA
196 TGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGA
* * *
303771 TTTAAGACTGAAAATGTACAAACAACATTATACGAAGGGAAATATGTATATTTAAATATGTGTAT
261 TTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTAT
*
303836 GAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTCTAAATGAAAGAAGTGTGGTGATGAT
326 GAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGAT
* *
303901 TGCT-GTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGACAATGATAGT
391 AG-TGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGT
** *
303965 TTTTC-AAGGAT-G-TTGTTACCCTCTAACTATA--TGAGTTAGAAACCAACAATATACTAAAGA
455 AATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAGA
* *
304025 TGGAATCGAAGTGATAGAGGGTGGATCGTAACCCACTGGCTATAGTAGA-CATAGGAACCAACGC
520 TGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGC-TAGGAACCAACGC
*
304089 TATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAGGAAACCGATAGAGTTCTAATCCAAG
584 TATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAG
*
304154 AACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAA
649 AACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA
* *
304194 TGAAGTTCTTAGTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA
1 -AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA
* * * *
304259 GTTTTTACAATTAAAATAACACAATTACCTAAATACAATTTAATTCAATTCAATGACTTGTCATT
65 GTTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATT
304324 CTTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
130 CTTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
* * *
304389 ATGAGTTTCAGATCATGTATATGATTGCCCAATCTTGATTCTAGTAAGAACTTCACAGTGCTTTG
195 ATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTG
* * *
304454 ATTTAAGAATGAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTA
260 ATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTA
* *
304519 TGAAAGTAATGGAATTGATAGAATCAAGTTGAAGTGGATTGTAAATGAATGAAGTGTGGTGATGA
325 TGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGA
* *
304584 TAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGTGTGGACAATGATAGT
390 TAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGT
*
304649 AATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGA
455 AATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAGA
* * *
304714 TAGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAACTATAGTAGAGCTAGGAACCAACGAT
520 TGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCT
* *
304779 ATAACAAGATGAAATGGATGAAAGCTTCAAGATCGAAAAGAAATCGATAGAGTTCTAATCCAAGA
585 ATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGA
304844 ACTAAAATGAATGCAAGT-TTTCAAAGAGTTTATTATGAA
650 ACTAAAATGAATGCAA-TCTTTCAAAGAGTTTATTATGAA
* * *
304883 AAAATTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGGACCACATGAAGAG
1 AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAG
* * * * * *
304948 TTTTTACAATTAAAATAAAATAATCACCTAAATTCCATTTAATTAAATTCAATGATTTGTCATTC
66 TTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTC
* * *
305013 TTCTTACCCTTTAATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGGTATGATCTCGGTTA
131 TTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTA
* *
305078 TGAGTTTCATATCATATATATGATTTG-CCGATCTTGA---T--T-----C-TCACAGTGCTTTG
196 TGAGTTTCAGATCATATATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTG
* *
305131 ATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAAGGAAATATGTATATTTAAATATGTTTA
260 ATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTA
* * * * *
305196 TTAAAGTAATGAAAATGATAGAATAAAGTTGACGTGGATTGTAAATGAAAGAAGTGTGCTGATGA
325 TGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGA
* * * * *
305261 TAGTGGTTGATTTGATGTAATGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGAGAATGGTAGT
390 TAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGT
** *
305326 AATTCAAAGGATGGATTGTGAATCTCTAACTATATTTGAGTTAGGAACCAACAATATACTAAAGA
455 AATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAGA
*
305391 TGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAACCAACGCT
520 TGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCT
* * * * *
305456 ATAACAAGATGAAATGGAT-TAGGCCTTCAAGACCTACAAGAAACTGATAGAGTTCTAATCCAAG
585 ATAACAAGATGAAATGGATGAAAG-CTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAG
* * *
305520 AACTAAAATGAAAGCAATCATTCAGAGAGTTTATTATGCAA
649 AACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AA
* * * * *
305561 AAAGTTCTTAGTACAAATG-CAACGGTGGTGCTTATTTATAGTGTTGATGGGCACCCTATGAAGA
1 AAAGTTCTTAGTACAAATGTC-GCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA
* * * *
305625 GTTTTTTCAATTAAAATAAAACGATCA-CTTAATGCAATTTAAATCAATTAAATGACTTGTCATT
65 GTTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATT
* *
305689 CTTCTTACACTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCCATT
130 CTTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
*
305754 ATGAGTTT--GTATCATATATATGATTGCCAGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTT
195 ATGAGTTTCAG-ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTT
* *
305817 GATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAAGGAAATATGTATATTTAAATATGTTT
259 GATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGT
* * * * *
305882 ATTAAAGTAATGAAAATGATAGAATAAAGTTGACGTGGATTGTAAATGAAAGAAGTGTGCTGATG
324 ATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATG
* * * * *
305947 ATAGTGGTTGATTTGATGTAATGAAAATGGTGAAGGATGTTTGTGGTTGGTGTGGAGAATGATAA
389 ATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAG
*** * ** *
306012 TAATTCAAAGGATGGATTGTGAATGTCTAACTGTATTTGAGTTAGGTATCAACAATATACTAAAG
454 TAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAG
*
306077 ATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAACCAACGC
519 ATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGC
* * *
306142 TATAACAAGATGAAATGGATG-AGGCCTTCAAGACCTACAAGAAACCGATAGAGTTCTAATCCAA
584 TATAACAAGATGAAATGGATGAAAG-CTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAA
* * *
306206 GAACTAAAATGAAAGCAATCATTCAGAGAGTTTATTATGCAA
648 GAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AA
* * *
306248 AAAGTTCTTAGTACAAATG-CAACGGTGGTGCCTATTTATAGTGTTGATGGGCACCATATGAAGA
1 AAAGTTCTTAGTACAAATGTC-GCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA
* * * * *
306312 GTTTTTGCAATTAAAATAAAACGATCA-CTTAATGCAATTTAAATCAATTAAATGACTTGTCCTT
65 GTTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATT
*
306376 CTTCTTACACTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
130 CTTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
*
306441 ATGAGTTT--GTATCATATATATGATTGCCAGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTT
195 ATGAGTTTCAG-ATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTT
*
306504 GATGGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGT
259 GATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGT
* * *
306569 ATGAAAGTAATGGAAATGATAGAA-CGAAGTTGAAGTGGATTCTAAATGAAATATGTGTGGTGAT
324 ATGAAAGTAATGGAAATGATAGAATC-AAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGAT
*
306633 GATAGTGGTTGATTGGATGTAAGG-AAATTGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATA
388 GATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATA
* *
306697 GTAGTTCAATGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAA
453 GTAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAA
*
306762 GATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGATAGGAACCAACG
518 GATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACG
*
306827 CTATAACAATATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAA
583 CTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAA
*
306892 GAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAA
648 GAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA
* * *
306933 TGAAGTTCTTAGTACAAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACTATATGAAGA
1 -AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGA
* * * * *
306998 GTTTTTACAATTAAAATAACATAATTATCTAAATGCAATTTAATTCAATTCAATGACTTGTCATT
65 GTTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATT
307063 CTTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
130 CTTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATT
* *
307128 ATGAGTTTCAGATCATGTATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCACAGTGCTTTG
195 ATGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTG
* * *
307193 ATTTAAGAATGAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAATATGTGTA
260 ATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTA
*
307258 TGAAAGTAATGGAAATGATAGAATCAAGCTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGA
325 TGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGA
* *
307323 TAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGAAAATGATAGT
390 TAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGT
*
307388 AATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGA
455 AATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAGA
*
307453 TGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGAT
520 TGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCT
*
307518 ATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAATCGATAGAGTTCTAATCCAAGA
585 ATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGA
307583 ACTAAAATGAATGCAAAT-TTTCAAAGAGTTTATTATGAAA
650 ACTAAAATGAATGC-AATCTTTCAAAGAGTTTATTATG-AA
* *
307623 AAATTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCACATGAAGAG
1 AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAG
* * * * *
307688 TTTTTACAATTAAAATAAAATAATCACCTAAATTCCATTTAATTGAATTCAATGACTTGTCATTC
66 TTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTC
* * *
307753 TTCTTACCCTTTAATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGGTATGATCTCGGTTA
131 TTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTA
307818 TGAGTTTCAGATCATATATATGATTTG-CCGATCTTGA---T--T-----C-TCGCAGTGCTTTG
196 TGAGTTTCAGATCATATATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTG
*
307871 ATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAAGGAAATATGTATATTTAAATATGTGTA
260 ATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTA
* * * *
307936 TGAAAGTAATGGAAATGATAGAA-CGAAGTTGAAGTGGATTCTAAATGAAATATGTGTGGTGATA
325 TGAAAGTAATGGAAATGATAGAATC-AAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATG
* *
308000 ATAGTGGTTGATTGGATGTAAGG-AAATTGTGAAGGACGTTTGTGGTTGGCGTGGACAATGATAG
389 ATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAG
* *
308064 TAGTTCAATGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAG
454 TAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAG
* * *
308129 ATGGAATCGAAGTGATAGAGGGTGGAACGTGACCAACTAGCTATAGTAGAGCTAGAAACCAACGC
519 ATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGC
* ** * * * *
308194 TATAACAAGATAAAATGGATGATGGCTTCAAGACCTACAAGAAACCGATAGAGTTTTAATCCACG
584 TATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAG
* * *
308259 AACTAAAATGAAAGCAATCTTTGAAAGTGTTTATTATGCAA
649 AACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATG-AA
* * * ** * * *
308300 AAATTTCTTAGTACAATTGCCATGGCGGTGCCTATTTATAGTGTTGATAGGCACTATATGAAGAT
1 AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAG
* * * *
308365 TTTTTACAATTATAATAAAACAATCTCCTAAATGCAATTTAATTCTATTAAATGAATTGTCATTC
66 TTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTC
308430 TTC
131 TTC
308433 GCAGTGCTTT
Statistics
Matches: 3929, Mismatches: 268, Indels: 89
0.92 0.06 0.02
Matches are distributed among these distances:
675 3 0.00
676 28 0.01
677 866 0.22
678 234 0.06
679 2 0.00
681 1 0.00
683 2 0.00
684 430 0.11
685 9 0.00
686 329 0.08
687 950 0.24
688 403 0.10
689 662 0.17
690 10 0.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (688 bp):
AAAGTTCTTAGTACAAATGTCGCGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAG
TTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTC
TTCTTACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTA
TGAGTTTCAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGA
TTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTAT
GAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGAT
AGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTA
ATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAACAATATACTAAAGAT
GGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTA
TAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAA
CTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAA
Found at i:309894 original size:688 final size:687
Alignment explanation
Indices: 308430--310125 Score: 2661
Period size: 688 Copynumber: 2.5 Consensus size: 687
308420 ATTGTCATTC
* **
308430 TTCGCAGTGCTTTGATTGAAGACTAAAAATGTACAAACATTGTTATAAGAAGGGAAATATGTATA
1 TTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
*
308495 TTTAAATATGTGAATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAG
66 TTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAG
* * *
308560 AAGTGTGGTGATGATAGTGGTAGATTGGATGTAAGGAAAATGGTGAAGGACGTTTGTGGTTGGCA
131 AAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCG
* * *
308625 TGGACAATGATAGTAGTTTTAAAGGATGGATTGTGACCCTCTAACTATATTTTAGTTAGAAACCA
196 TGGACAATGATAGTA-ATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCA
*
308690 ACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGGCCCACTAGCTATAGTAGAG
260 ACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAG
* * ** *
308755 CTATGAACCAACGCTATAACAAGATAAAATGGATGAAGGCTTCAAAACATACAAGAAATCGATAG
325 CTAGGAACCAAAGCTATAACAAGATAAAATGGATGAAGAATTCAAAACAGACAAGAAATCGATAG
* *
308820 AGTTCTAATCCACAAACTAAAATGAAAGAAATCTTTGAAAGAGTTTATTATGCAAAGAGTTCTTA
390 AGTTCTAATCCACAAACTAAAATGAAAGAAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTA
* *
308885 GTACAAATGCATGGTGGTGCCTATTTATAGTGTTGATAGGAACCATATGAAGATTTTTTACAAAT
455 GTACAAATGCATGGAGGTGCCTATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACAAAT
* * *
308950 ATAATAAAACAATCTCCTAAATAAATTTAATTCAATCAAATGACTTTCCATTCTTCTAACCCTTT
520 AAAATAAAACAATCACCTAAATAAATTTAATTCAATCAAATGACTTTCCATTCTTCTAACACTTT
*
309015 GATGGTTGCCAATATAGATTGAAAATGGATGAATAATGATATGATCTCTATTATGAGTTTCGGAT
585 GATGGTTGCCAATATAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
* * *
309080 CATATATATGATTGCCCAATCGTGATTGTAGTAAGAAC
650 CATATATATGATTGCCCAATCGTGATTCTAGTAACAAA
309118 TTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
1 TTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
* *
309183 TTTAAATATCTGTATGAAAGTAATGGAAACGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAG
66 TTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAG
* *
309248 AAGTGTGGTGATGATAGTGTTTGATTGGATGCAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCG
131 AAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCG
* * *
309313 TGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGATTTAGAATCCAA
196 TGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAA
*
309378 CAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATTGTAGAGC
261 CAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGC
* * * * * *
309443 TAGGAGCCAAAGCTATAACAAGATGAAATGGATGACGAATTCAAGACCGATAAGAAA-CTGATAG
326 TAGGAACCAAAGCTATAACAAGATAAAATGGATGAAGAATTCAAAACAGACAAGAAATC-GATAG
* * * * * *
309507 AGTTTTAATCCA-AGAACTACAGTGAATGCAATCTTTCAGAGAGTTTATTATGCAAAAAAG-TCT
390 AGTTCTAATCCACA-AACTAAAATGAAAGAAATCTTTCAAAGAGTTTATTATGC-AAAAAGTTCT
* *
309570 TAGTACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTATA
453 TAGTACAAATG-CATGGAGGTGCCTATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACA
* * * * *
309635 ATTAAAATAAATCAATGACCTAAATGAAATTTAATTCAATTAAATGAC-TTCTCATTCTTCTTAC
517 AATAAAATAAAACAATCACCTAAAT-AAATTTAATTCAATCAAATGACTTTC-CATTCTTCTAAC
* *
309699 ACTTTGATGGTTGTCC-ATGTAGATTGAAAATGGATTAATAATGATATGATCTCGATTATGAGTT
580 ACTTTGATGGTTG-CCAATATAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTT
* *
309763 TTGGATCATATATATGATTGCCCGAT-GTTGATTCTAGTAAACAAA
644 TCGGATCATATATATGATTGCCCAATCG-TGATTCTAGT-AACAAA
*
309808 TTCGCAGTGCTTTGATTGAAGACTGGAAATGTACAAACAACGTTATAAG-AGGGAAATATGTATA
1 TTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
* * *
309872 TTTAAATATGTGTAT-AAAGTAATGGAAATGATAGAATAAAGTTCAAGTGGATTGTAAATGAAAG
66 TTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAG
*
309936 AAGTGTGGTGATGATAGTGGTTGATTGGTTGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCG
131 AAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCG
*
310001 TGGTCAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAA
196 TGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAA
*
310066 CAATATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACGTGACCCACTAGCTATAGT
261 CAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGT
310126 TATGTAAGGC
Statistics
Matches: 926, Mismatches: 73, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
686 2 0.00
687 216 0.23
688 503 0.54
689 151 0.16
690 54 0.06
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (687 bp):
TTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
TTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGTTGAAGTGGATTCTAAATGAAAG
AAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCG
TGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATTTGAGTTAGAAACCAA
CAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGC
TAGGAACCAAAGCTATAACAAGATAAAATGGATGAAGAATTCAAAACAGACAAGAAATCGATAGA
GTTCTAATCCACAAACTAAAATGAAAGAAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAG
TACAAATGCATGGAGGTGCCTATTTATAGTGTTGATAGGAACCATATGAAGAGTTTTTACAAATA
AAATAAAACAATCACCTAAATAAATTTAATTCAATCAAATGACTTTCCATTCTTCTAACACTTTG
ATGGTTGCCAATATAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATC
ATATATATGATTGCCCAATCGTGATTCTAGTAACAAA
Found at i:315198 original size:6 final size:6
Alignment explanation
Indices: 315187--315211 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
315177 GGGACGCTAA
315187 ACGGGG ACGGGG ACGGGG ACGGGG A
1 ACGGGG ACGGGG ACGGGG ACGGGG A
315212 AAAATTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.64, T:0.00
Consensus pattern (6 bp):
ACGGGG
Found at i:315284 original size:12 final size:12
Alignment explanation
Indices: 315256--315304 Score: 62
Period size: 12 Copynumber: 4.0 Consensus size: 12
315246 TTTGGTAATC
315256 CCCGACCCGATTA
1 CCCGACCCGA-TA
*
315269 CCCGCCCCGATA
1 CCCGACCCGATA
*
315281 CCCGACACGATA
1 CCCGACCCGATA
*
315293 CCTGACCCGATA
1 CCCGACCCGATA
315305 AATATTAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
12 22 0.71
13 9 0.29
ACGTcount: A:0.24, C:0.47, G:0.16, T:0.12
Consensus pattern (12 bp):
CCCGACCCGATA
Found at i:317034 original size:29 final size:29
Alignment explanation
Indices: 317002--317059 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
316992 TTGTTTAATC
317002 GGTTTCTAATTTGTATCTTGTATTTATTT
1 GGTTTCTAATTTGTATCTTGTATTTATTT
*
317031 GGTTTCTAATTTGTATGTTGTATTTATTT
1 GGTTTCTAATTTGTATCTTGTATTTATTT
317060 CAGTCTATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.05, G:0.16, T:0.62
Consensus pattern (29 bp):
GGTTTCTAATTTGTATCTTGTATTTATTT
Found at i:321228 original size:575 final size:576
Alignment explanation
Indices: 320136--321290 Score: 1906
Period size: 575 Copynumber: 2.0 Consensus size: 576
320126 ATTTTTTAGT
*
320136 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGATTTTTTACAATTA
1 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * * *
320201 TAATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGCCATTCTTCTAACCCTTT
66 AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGCCATTCTTCTAACACTTT
* ** * *
320266 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGACATGATCTCTATTATGAGTTTCGGAT
131 GATGGTTACCCATGTAGATCAAAAATGGATGAATAATGACATGATCTCGATTATGAATTTCGGAT
**
320331 CATATATATGATTGCCCAATCTTGATTCTAGTAAGAACTTCGTAGTGCTTTTGATTGAAGACTGA
196 CATATATATGATTGCCCAATCTTGATTCTAGTAAGAACTTCACAGTGCTTTTGATTGAAGACTGA
320396 ATATGTACAAACAACGTTATAAGTAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
261 ATATGTACAAACAACGTTATAAGTAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
* ** *
320461 AAACGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAAGAGTGTGGTGATGATTGTGGTTGATT
326 AAACGATAGAATGAAGATGAAGTGGAAAGTAAATGAAAAGAGTGTGGTGATGATAGTGGTTGATT
* *
320526 GTATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
391 GGATGTAAGGAAAATGGTAAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
*
320591 GGATTGTGACCCTCTAACTATATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
456 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
* * *
320656 GATAGAGGGTGGAACGTGACCCACTAGCTATTGTAGAGCTAGGAACCAAAGCTATA
521 GATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCTAGGAACCAAAGATATA
*
320712 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTAGAATTA
1 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * * *
320777 AAATAAATCAATGACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTT
66 AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGCCATTCTTCTAACACTTT
* * * *
320842 GATGGTTATCCATGTAGATCAAAAATGGATTAATAATGATATGATCTCGATTATGAATTTTGGAT
131 GATGGTTACCCATGTAGATCAAAAATGGATGAATAATGACATGATCTCGATTATGAATTTCGGAT
* *
320907 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAGTTCACAGTGC-TTTGATTGAAGACTG
196 CATATATATGATTGCCCAATCTTGATTCTAGTAAG-AACTTCACAGTGCTTTTGATTGAAGACT-
320971 GAA-ATGTACAAACAACGTTATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
259 GAATATGTACAAACAACGTTATAAGTAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAAT
*
321034 GGAAACGATTGAATGAAGATGAAGTGGAAAGTAAATG-AAAGAAGTGTGGTGATGATAGTGGTTG
324 GGAAACGATAGAATGAAGATGAAGTGGAAAGTAAATGAAAAG-AGTGTGGTGATGATAGTGGTTG
321098 ATTGGATGTAAGGAAAATGGTAAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAG
388 ATTGGATGTAAGGAAAATGGTAAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAG
321163 GATGGATTGTGACCCTCTAACTATAT-TCGAGTTAGAAACCAACAATATACTAAAGATGGAATCG
453 GATGGATTGTGACCCTCTAACTATATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCG
* * *
321227 AAGTTATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCTAGGAATCAACGATATA
517 AAGTGATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCTAGGAACCAAAGATATA
321287 ACAA
1 ACAA
321291 GACGAAAAGG
Statistics
Matches: 538, Mismatches: 37, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
574 5 0.01
575 275 0.51
576 245 0.46
577 13 0.02
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (576 bp):
ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGCCATTCTTCTAACACTTT
GATGGTTACCCATGTAGATCAAAAATGGATGAATAATGACATGATCTCGATTATGAATTTCGGAT
CATATATATGATTGCCCAATCTTGATTCTAGTAAGAACTTCACAGTGCTTTTGATTGAAGACTGA
ATATGTACAAACAACGTTATAAGTAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
AAACGATAGAATGAAGATGAAGTGGAAAGTAAATGAAAAGAGTGTGGTGATGATAGTGGTTGATT
GGATGTAAGGAAAATGGTAAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
GATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCTAGGAACCAAAGATATA
Found at i:322027 original size:687 final size:688
Alignment explanation
Indices: 320712--323409 Score: 4022
Period size: 688 Copynumber: 3.9 Consensus size: 688
320702 CAAAGCTATA
*
320712 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTAGAATTA
1 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* * *
320777 AAATAAATCAATGACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTT
66 AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
** ** * * **
320842 GATGGTTATCCATGTAGATCAAAAATGGATTAATAATGATATGATCTCGATTATGAATTTTGGAT
131 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
* * *
320907 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAAAGTTCACAGTGCTTTGATTGAAGACTGG
196 CATATATATGATTGCCCGATCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGA
320972 AAATGTACAAACAACGTTATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
260 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
* * * **
321036 AAACGATTGAATGAAGATGAAGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
325 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
* * * * *
321101 GGATGTAAGGAAAATGGTAAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGAT
390 GGATGTAAGGAAAATGGTGAAGGATGCTTGTGGATGACATGGACAATGATAGT-ATTCAAAGGAT
321166 GGATTGTGACCCTCTAACTATAT-TCGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
454 GGATTGTGACCCTCTAACTATATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAG
* * * * * *
321230 TTATAGAGGGTGGAACATGACCCACTAGCTATAGTAGAGCTAGGAATCAACGATATAACAAGACG
518 TGATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACGATATAACAAGATG
* * * * * *
321295 AAAAGGATGA-AGGCTTCAAGACCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTGAAATGA
583 AAATGGATGAGA-ACTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGA
321358 AATCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
647 AATCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * * * *
321400 ACAAATGCCACGGAGGTGCCTATTTATAGTGTTGATAGGCACTATCTGAATAATTTTTACAATTA
1 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* ** * * * * *
321465 ACATAAAACAATCTTCTAAATGCAATTTAATTTAATTAAATGACTTGTCGTTATTCTAACCCTTT
66 AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* * *
321530 GATAGTTTCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGAT
131 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
* * * * *
321595 CATATATATGATTACCCAATCTTGATTCTAGTAAGAACTTCGCAGTTCTTTGATTTAAGACTAAA
196 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
*
321660 AATGTACAAACAACGTTATAAG-AGGGAAATATGTATATTTAAATATGTATATGAAAGTAATGGA
261 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
*
321724 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTAATTG
326 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
* * * * *
321789 GATGTAAGGAAAATGGTGAAGAATGTTTGTGGTTGACGTGGACAATGATAGTAATTCAAAGGATA
391 GATGTAAGGAAAATGGTGAAGGATGCTTGTGGATGACATGGACAATGATAGT-ATTCAAAGGATG
321854 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
455 GATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTG
* * * *
321919 ATAGAGGGTGGAACGTGACCCACTAGCTATAGTAAAGCTAGGAACCAAAGATATAACAAGATGAA
520 ATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACGATATAACAAGATGAA
* *
321984 ATGGATGACGAA-TTCAAGA-CAGATAAGAAACCGATAGAGTTCTAATCCAAGAATTAAAATGAA
585 ATGGATGA-GAACTTCAAGATC-GACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAA
* * *
322047 AGCAATCCTTCAGAGAGTTTATTATGCAAAAAGTTCTTAGT
648 ATCAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * *
322088 ACAAATGCAATGGAGGTGCCAATTTATAGTGCTGATAGGCACCATATGAAGAGTTTTTACAATTA
1 ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
* *
322153 AAATAAAACAATGACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTT
66 AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
* * * *
322218 GATGGTTGCCCATGTAGATTGAAAAAGGATTAAGAATGATATGATCTCGATTATGAGTTTTAGAT
131 GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
*
322283 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTAAAGACTGAA
196 CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
322348 AATGTACAAACAAC-TTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
261 AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
*
322412 AATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
326 AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
* * *
322477 GATGTAAAGAAAA---TGAAGGATGCTTGTGGATGGCATGGAGAATGATAGTATTCAAAGGATGG
391 GATGTAAGGAAAATGGTGAAGGATGCTTGTGGATGACATGGACAATGATAGTATTCAAAGGATGG
* * ** *
322539 ATTGTGACCCTCTAACAATATATGAGTTAGGAACCAACAATATACTAAAGATGGCTTCGATGTGA
456 ATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGA
* * *
322604 TAGAGGGTGGAACCTAACACACTAGCTATAGTAGAGCTAGGAACCAACGCTATAATAAGATGAAA
521 TAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACGATATAACAAGATGAAA
* * *
322669 TGGATGAAAACTTCAAGATCGACAAGAAACTGATAGAGCTCTAATCCAAGAACTAAAATG-AATG
586 TGGATGAGAACTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAAAT-
* * *
322733 CAATCTTTCAAAGAGTTTTTTATGAAAAAAGTTCTTAGC
650 CAATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
* * * * *
322772 ACAAATGTCGTGCAGGTTG-CTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATT
1 ACAAATGCCATGGAGG-TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATT
* * *
322836 AAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGATTTGTCATTCTTCTAACCCTT
65 AAAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTT
* * * *
322901 TGATTGTTGCCCATGTAGATTGAAAATGGATGAATAATTATATGATCTCGATTTTGAGTTCCAGA
130 TGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGA
*
322966 TCATATATATGATTGTCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGA
195 TCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGA
*
323031 ATATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
260 AAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGG
* *
323096 AAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGTTTGATT
325 AAATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATT
* * * *
323161 GGATATAACGAAAATGGTGAAGGATGCTTGTGGAT-AGCATGGAGAACGATAGTATTCAAAGGAT
390 GGATGTAAGGAAAATGGTGAAGGATGCTTGTGGATGA-CATGGACAATGATAGTATTCAAAGGAT
* *
323225 GGATTGTGACCCTCTAACTATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGATGT
454 GGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGT
* * * * *
323290 GATAGAGGGTGGAATGTAACACACTAGCTATATTAGAGCTAGGAACTAACGCTATAATAAGATGA
519 GATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACGATATAACAAGATGA
*
323355 AATGGATGA-AAGCTTCAAGATCGACAAGAAACCGATAGAGATCTAATCCAAGAAC
584 AATGGATGAGAA-CTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAAC
323410 CAAATTTCGT
Statistics
Matches: 1832, Mismatches: 162, Indels: 32
0.90 0.08 0.02
Matches are distributed among these distances:
683 4 0.00
684 461 0.25
685 158 0.09
686 1 0.00
687 373 0.20
688 834 0.46
689 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (688 bp):
ACAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTA
AAATAAAACAATCACCTAAATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACACTTT
GATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGAT
CATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAA
AATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGA
AATGATAGAATGAAGTTGAAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTG
GATGTAAGGAAAATGGTGAAGGATGCTTGTGGATGACATGGACAATGATAGTATTCAAAGGATGG
ATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGA
TAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTAGGAACCAACGATATAACAAGATGAAA
TGGATGAGAACTTCAAGATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAAATC
AATCTTTCAAAGAGTTTATTATGCAAAAAGTTCTTAGT
Found at i:324931 original size:689 final size:688
Alignment explanation
Indices: 323428--342156 Score: 27282
Period size: 689 Copynumber: 27.3 Consensus size: 688
323418 GTGCAGGTTG
* *
323428 CTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
323493 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
323558 TGAAAATGGATGAATAATCATATGATCTCGATTATGAGTTTCAGATAATATATATGATTGCCAGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * *
323623 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTGAAAATGTTCAAACAACATTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * * *
323688 AAGAAGGGAAATATGTATATTTAAATATGTGTTTGAAACTAATGGAAATGATAGAATCAAGTTGA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
** * *
323753 AGTGGATTGTAAATGAAAGAAGTGTGGTGATTATAGTGGTTGATTGGATGTAAGGAAAATGGTGA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * * * *
323818 AGGATATTTATGGTCGGCGTGGACAATGATAGTAATTCAAAGGATGG-TTGTAACCCACTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* *
323882 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAA---AAGTGATAGAGGGTGGTACGTAAC
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
*
323944 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAA-AGCTTCAAG
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGA-ATTCAAG
* * * *
324008 ATCGACAAGAAACCGATAGAGTTCTAATCCAATAACTAAAATGAATTCAATCTTTTAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
** * *
324073 ATTATG-AACGGAGTAT-TTAGTACAAATGTCGTGGAGGTGC
649 ATTATGCAA-AAAGT-TCTTAGTACAAATGCCATGGAGGTGC
*
324113 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATGAAACAATCACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
324178 ATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTGATGGTTGCCCGTGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* *
324243 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATACGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * * *
324308 TCTTGATTCTAGTAAGAACTTCGGAATGCTTTGATTTAAGACTAAAAATGTACAAACAATGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * * *
324373 AAGAAGGGAAATGTGTATATTTAAATATGTGTATGTAGGTAATGGAAATGATAGAATGAAGTTGA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
** * * * * *
324438 AGTGGATTGTAAAAGAAAAAAGTGTGGTGATGATAGTGGTTAATTGGATGTAACGAAAATGGTGA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * * *
324503 AGGATGTTTGTGGTTGGAGTGGACAATGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
324568 TATATGAGTTAGAAACCAATAATATACTAATGATGGAATCGAAGTGATGGAGGGTGGAACGTGAC
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
* * *
324633 CCACTAGCTATAGTAGAGATAAGAACCAACGCTATAACAAGATGAAATGGATGACGAATTCAAGA
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGA
* * * *
324698 TCGACAAGAAACGGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATTTTTGAAAGAGTTTA
585 CCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTA
* * * *
324763 TTATGAAAAAAGTTCTTAGAACAAATGTCGTGGAGGTGC
650 TTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
324802 CTATTTATGGTGTTGATAGGCACCATATGAAGAGCTTTTACAATTAAAATAAAATAATCTCCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
324867 ATTCAATTTAATTCAATTAAATGATTTGTCATTCTTCAAACCTTTTGATGGTTGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
**
324932 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * * * * * *
324997 TCTTGATTCTATTAAGAATTTCGTAGTTCTTTGATTTAAGACTAAAAATTTACAAACAACATTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * * * *
325062 AAGAAGGGAATTATGTATATTTAAATATGTATATGAAATTAATGGAAATGATAGAATCAAGTTGA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
** * * *
325127 AGTGGATTGTAAATGAAAGAAGTGTGGTGGTGATAGTGGTTGATTTGATGTAAGGAAAATGGTGA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
*
325192 AGGATGTTTGTGGTTGGCCTGGACAATGATAGTAATTCAAAGGATGG-TTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
*
325256 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATC-AATGTGATAGAGGGTGGAACGTAA
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAA-GTGATAGAGGGTGGAACGTGA
* ** *
325320 CCCACTAGCTATAGTAGAGTTAGGAACCAACGCTATAACAAGATGAAAAAGATGAA-AGCTTCAA
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGA-ATTCAA
* *
325384 GATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTT
583 GACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTT
* * *
325449 TATTATG-AAAGAAGTTCTTAGTACAAATGTCGTTGAGGTGC
648 TATTATGCAAA-AAGTTCTTAGTACAAATGCCATGGAGGTGC
* *
325490 CTATTTATAGTGTTGATAGGCACCATATGAAGACTTTTTAGAATTAAAATAAAACAATCACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
325555 ATGCAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTGATGGATGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
*
325620 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* *
325685 TCTTGATTCTATTAAGAACTTCGCAGTGCTTTTGATTGAAGACTGAATATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAGAACTTCGCAGTGC-TTTGATTGAAGACTGAAAATGTACAAACAACGTTA
* * * * *
325750 TAAAAAGGGAAATATGTATATTTAAATATGTGTATGTAGGTAATGGAAATGATAGAATAAAGTTG
260 T-AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATG
** * * * *
325815 AAGTGGATTGTAAAAGAAAGAAGTGTGGTGATGATAGTGGTTAATTGGATGTAACGAAAATGGTG
324 AAGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTA
* * * * *
325880 AAGGATGTTTGTGGTTGGCGTTGAGAATGATAGT-ATTCAACGGATGGATTGTTACCTTCTAACT
389 AAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
* * * *
325944 ATATATGAGTTAGGAACGAACAATATACTAAAGATGGAATCGAAGTGATACAGGGTGGAACGTAA
454 ATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* * * * * *
326009 CCCACTCGCTATTGTATAGCTAGGAACCAATGCTATGACAAGATGAAATGGATGAA-AGCTTCAA
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGA-ATTCAA
* * * * * * *
326073 GATCGACAAGAAACCGATAGAGTTCTAATCCAAGAATTTAAATGAATGAAATTTTTGAATGAGTT
583 GACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTT
* * *
326138 TATTATGAAAAAAGTTCTTAGTACAAATGTCGTGGAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* *
326179 CTATATATAGTGTTGATAGGCACCATATTAAGAG---TT----TT----T---ACAAT----TAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
326226 ATG-------A--C-------T---TT-TCATTCTTCAAACCTTTTGATGTTTGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * **
326271 TGAAAACGGATGAATAATAATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
** * * * * * *
326336 TCTTGATTCTTTTAATAACTTCGCAATTCTTTGATTTAAGACTGGAAATTTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * *
326401 AAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAGTGAAAATGATAGAATGAAGTTGA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
** * * *
326466 CA-TGGATTGTAAATGAAAGAAGTGTGCTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTG
325 -AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTA
* * ***
326530 AAGGATGTTTGTGGTTGGCATGGAGAATGATAGTAATTCAAAGGATGGATTGTGAATGTCTAACT
389 AAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
* * * *
326595 ATATATGAGTTAGGAACCAACGATATACTAAAGATGGAGTCGAAGTGATAGAGGGTGGAACGCGA
454 ATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
**
326660 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGCCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * * * **
326725 ACCTACAAGAAACCGAAAGAGTTCTAATCCAAGATCTAAAATGAAAGTAATAATTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
*
326790 ATTATGCAAAAAGTTCTTAGTACAAATTCCATGGAGGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * *
326830 CTATTTATAGTGTTGAAATGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCTCCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
326895 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCTTTTGATGGTTGCCCATGAAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * *
326960 TGAAAATGGATGAAAAATGATATGATCTCGATTATGAGTTTCAGATCATATATATGATTGTCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* *
327025 TCTTGATTCTATTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAATGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * *
327090 AAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGAAAATGATAGAATAAAGTTGA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
* ** * * * * *
327155 CGTGGATTGTATATGAAAGAAGTGTGCTGATGATTGTGGTTGATTGGATGTAACGAAAATGGTGA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * ***
327220 AGGATGTTTGTGG-TGTTCGTGGAGAATGATAGTAATTCAAAGGATGGATTGTGAATGTCTAACT
390 AGGATGTTTGTGGTTG-GCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
*
327284 ATATATGAGTTAGGAAA-CAACAATTTACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTG
454 ATATATGAGTTA-GAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTG
* * * ** *
327348 ACCCACTAGCTATAGTAGAGCTAAGAACCAACGCTATAATATGATGAAATGGATGAAGCCTTCAT
518 ACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAA
* * * **
327413 GACCTACAAGAAACCGATAGAGTTCTAGTCCAAGAACTAAAATGAAAGCAATAATTCAAAGAGTT
583 GACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTT
* * * *
327478 TGTTATGCAAAATGTTCTTAGAACAAATGCCATGAAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
*
327519 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCTCCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
327584 ATACAATTTAATTCAATTAAATGACTCGTCATTCTTCAAACCTTTTGATGGTTGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * * * *
327649 TTAAAATGGTTGACTAATGATATTATCTTGATTATGAGTTTCAGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * * *
327714 TCTTGATTCTATTAAGAACTTCGCAATGCTTTGATTTAAGAGTGAAAATTTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * * * *
327779 AAGAAGGGAAATATTTATATTTAAATATGTGTATGAAAGTAGTGGAAATGATAAAATGAAGTTCA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
** * *
327844 AGTGGATTGTAAATGAAAGAAGTATGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * * * * *
327909 AGGATATTTGTAGTTGGCGTGGTCAATGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * * *
327974 TATATGAGTTAGAAACCAAAAATATACTAATGATGGAATCGAAGTGATGGAGGGTGAAACGTGAC
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
* * *
328039 CCACTAGCTATAGTATAGCTA-GAACCAACGCTATAACAAGATGATATGGATGATGAATTCAAGA
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGA
* * * *
328103 CCGACAAGAAACCGATAGAGTTCTAATCCAATAACTAAAATGAAAGCAACCATT-AAGAGAGTTT
585 CCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAA-AGAGTTT
* * ** *
328167 ATTATGCAAAAAGTTCTTAATACAAATGCAACAGTGGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
328207 CTGTTTATAGTGTTGATGGGCACCGTATGAAGAGTTTTTACAATTAAAATAAAACAATCA-CTTA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
328271 ATGCAA-TT-ATATCAATTAAATAACTTGTCATTCTTCTTACACTTTGATGGTTGCCCATGTAGA
66 ATGCAATTTAAT-TCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGA
* * * * *
328334 TTGAAAATGGATGAATAATGACATGATCTCGATTTTGAGTTT-GTATTATATATATGATTGCCTG
130 TTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCG
*
328398 ATCTTGATTC-ATGTAAGAACTTCGCAGTGCTTTCATTGAAGACTGAAAATGTACAAACAACGTT
195 ATCTTGATTCTA-GTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTT
* * *
328462 ATAAGAAGGGAAATATGTATATTTAAATATGTGTATAAAAGTAATGGAAATGATAGAATGATGTT
259 ATAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGAT
* * * *
328527 GAAGTGGATTA-TAAATGAAAAAAGTGTGGTGATGATAGTGGTTGATTGAATGTAAGGAAAATGA
323 GAAGTGGA-AAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGG
**
328591 TAAAGGACATTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAA
387 TAAAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAA
* * * * *
328656 CTATATTTAAGTTAGAAACAAACAATATACTAAAGATGAAATCGAAGTGATAGAGGGTGGGACGT
452 CTATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGT
* * * * * ** *
328721 GACCCACTAACTATAGTAGAGTTAGGAACCAACACAATAAACAAGATAAAATGGATGAAGGCTTA
517 GACCCACTAGCTATAGTAGAGCTAGGAACCAACGCTAT-AACAAGATGAAATGGATGAAGAATTC
* * * * * * * *
328786 AAGAACTACAAGAAACTGATATAGTTCTAATCCAAAAACTAAAATGAAAGCAATATTTGAAAGAG
581 AAGACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAG
*
328851 TTTATTATGCAAAAATTTCTTAGTACAAATGCCATGGAGGTGC
646 TTTATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
328894 CTATTTATAGTGTTGATAGGCACCATATGAATATTTTTTACAATTATAATAAAACAATCTCCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
328959 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
329024 TGAAAATGGATGAATAATGATATGATCTCTATTATGAATTTCGGATCATATATATGATTTCCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
*
329089 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTTGATTGAAGACTGAATATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAGAACTTCGCAGTGC-TTTGATTGAAGACTGAAAATGTACAAACAACGTTA
* * **
329154 TAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGACTGAATTTG
260 TAAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATG
** * * * * *
329219 AAGTGGATTGTAAATGAAAGGAGTGTGGTGATGATTGTGGTTGATTAGATGTAAGGAAAATTGTG
324 AAGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTA
* * *
329284 AAGAATGTTTATGGTTAGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
389 AAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
*
329349 ATATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
454 ATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* * ** * *
329414 CCCACTAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCGAAATCTAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
*
329479 ACCGACAAGAAACCGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTT
* * *
329543 TATTATGCAAAAAGGTCTTAGTACAAAAGCCATAGAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * * *
329584 CTATTTATAGTGTTGATAGGCACCATACGAAGAGTTTTTAGAATTAAAATAAATCCATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * * *
329649 ATGAAATTTAATTCAATTAAATGACTTGTCATTATTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
329714 TAAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTGGATCATTTATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * *
329779 TCTTGATTCTAGTAAGAAAGTTCACAGTGCTTTGATTGAAGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
* *
329844 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATTGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
329909 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
329974 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
330039 TATTTGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGAC
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
* * * **
330104 CCACTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGACGAAAAGGATGAAGGCTTCAAGA
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGA
* * * *
330169 GCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGCAATCTTTCAAAGAGTTTA
585 CCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTA
* *
330233 TTATGCAAAAAGTTCTTAGTACAAATACCATAGAGGTGC
650 TTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
330272 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
330337 ATGCAATTTAATTTAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
330402 TGAAAATGGATGACTAATGATATGATCTCGATTATGTGTTTCGGATCATATATATGATTACCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * **
330467 TCTTGATTCTAGTAAGAACTTCACAGTGCTTTTATTTAAGACAAAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
*
330532 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGAA
261 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
*
330597 GTGGAAAGTAAATTAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
326 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
*
330662 GGATGTTTGTGGTTGGCGTAGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
391 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
* * * *
330727 ATATTAGATAGAAACCAACAGTATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACATGACC
456 ATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
* * * ** * *
330792 CACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCGAAATCTAGAC
521 CACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGAC
*
330857 CGACAAGAAACCGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTTTA
586 CGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTTTA
*
330921 TTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
650 TTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
330960 CTATTTATAGTGTTGATAGGCACCATATGAAGGGTTTTTAGAATTAAAATAAATCAATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
331025 ATGGAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
331090 TAAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTGGATCATATATATGATTTCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * *
331155 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGAAGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
*
331220 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
331285 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
*
331350 AGGATGTTTGTGGTTGGCGTGGGCAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
331415 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* **
331479 CCCACTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * *
331544 ACCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
* * *
331608 ATTATACAAAAAGTTCTTAGTACAAATACAATGGAGGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
331648 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
331713 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
331778 TGAAAATGGAT-AACTAATGATATGATCTCGATTATGTGTTTCGGATCATATTTATGATTACCCA
131 TGAAAATGGATGAA-TAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCG
* *
331842 ATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTAAAAATGTACAAACAACGTTA
195 ATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
* * *
331907 TAAGAGGGAAATATATATATTTAAATATGTGTATGAAAGTATTGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
*
331972 AGTGGAAAGTAAATTAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
332037 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* *
332102 TATATTAGTTAGAAACCAAAAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
* * * ** * *
332167 CCACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCGAAATCTAGA
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGA
*
332232 CCGACAAGAAACCGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTTT
585 CCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTTT
*
332296 ATTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * * *
332336 CTATTTATAGTGTTGATAGGCACCATATGAAGGGTTTTTAGAATTAAAATAAATCAATGAGCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * * *
332401 ATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTGTCTATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * *
332466 TAAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTGGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * *
332531 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGAAGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
*
332596 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
332661 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * *
332726 AGGATGTTTGTGGTTGGCATGGGCAATGATAGTAATTTAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * * *
332791 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCAAAGTTATAGAGGGTGGAACATGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* **
332855 CCCACTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * * *
332920 ACCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGTAATATTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
** * * *
332984 ATTATAAAAAAAGTTATTAGTACAAATACCATGGATGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
333024 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
333089 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
333154 TGAAAATGGATGACTAATGATATGATCTCGATTATGTGTTTCGGATCATATATATGATTACCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * **
333219 TCTTGATTCTAGTAAGAACTTCGCAGTTCTTTGATTTAAGACAAAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
*
333284 AAGAGGGAAATATGTATATTT-AA-ATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGAA
261 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
333347 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
326 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
* * *
333412 GGATGTTTGTGGTTGGCATGGGCAATGATAGTAATTTAAAGGATGGATTGTGACCCTCTAACTAT
391 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
* * *
333477 AT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGAC
456 ATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
* * * **
333541 TCACTAGCTATAGTAGAGCTAGGAATCAACGCTATAATAAGATGAAATGGATGAAGGCTTCAAGA
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGA
* * * * *
333606 CCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGTAATATTTCAAAGAGTTTA
585 CCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTA
* * * * *
333670 TTATACACAAAGTTATTAGTACAAATACCATGGATGTGC
650 TTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
333709 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
333774 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
333839 TGAAAATGGATGACTAATGATATGATCTCGATTATGTGTTTCGGATCATATATATGATTACCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* *
333904 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTAAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* *
333969 AACAGGGAAATATGTATATTTAAATATCTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
261 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
*
334034 GTGGAAAGTAAATTAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
326 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
334099 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
391 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
*
334164 ATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
456 ATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
* * * ** * *
334229 CACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCGAAATCTAGAC
521 CACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGAC
* *
334294 CGACAAGAAATCGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTTTA
586 CGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTTTA
*
334358 TTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
650 TTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
334397 CTATTTATAGTGTTGATAGGCACCATATGAAGGGTTTTTAGAATTAAAATAAATCAATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * * *
334462 ATGAAATTTAATTCAATTAAATGACTTGGCATTCTTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * *
334527 TAAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTGGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * *
334592 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGACGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
*
334657 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
334722 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * *
334787 AGGATGTTTGTGGTTGGCATGGGCAATGATAGTAATTTAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
334852 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* **
334916 CCCACTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * * *
334981 ACCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGTAATATTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
* * * *
335045 ATTATACAAAAAGTTATTAGTACAAATACCATGGATGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
335085 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
335150 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
335215 TGAAAATGGATGACTAATGATATGATCTCGATTATGTGTTTCGGATCATATATATGATTACCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* *
335280 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACTAAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* *
335345 AACAGGGAAATATGTATATTTAAATATCTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
261 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
*
335410 GTGGAAAGTAAATTAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
326 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
335475 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
391 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
*
335540 ATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
456 ATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
* * * ** * *
335605 CACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCGAAATCTAGAC
521 CACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGAC
* *
335670 CGACAAGAAATCGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTTTA
586 CGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTTTA
*
335734 TTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
650 TTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * ** *
335773 CTATTTATAGTGTTGATAGGCACCATATGAAGGGTTTTTAGAATTAAAATAACTCAATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
335838 ATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * *
335903 TAAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTGGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * *
335968 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGACGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
*
336033 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
336098 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * *
336163 AGGATGTTTGTGGTTGGCATGGGCAATGATAGTAATTTAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
336228 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* **
336292 CCCACTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * * *
336357 ACCTACAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGTAATATTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
* * * *
336421 ATTATACAAAAAGTTATTAGTACAAATACCATGGATGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
336461 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
336526 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
336591 TGAAAATGGATGACTAATGATATGATCTCGATTATGTGTTTCGGATCATATATATGATTACCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * **
336656 TCTTGATTCTAGTAAGAACTTCACAGTGCTTTTATTTAAGACAAAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
336721 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
261 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
* *
336786 GTGGAAAGTAAATTAAAGAAGTGTGGTGATGATAGTTGTTGATTGGATGTAAGGAAAATGGTAAA
326 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
336851 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
391 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
*
336916 ATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
456 ATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
* * * *
336981 CACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCAA-AA-TCTAG
521 CACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATG--AAGAATTCAAG
* *
337044 ACCGACAAGAAACTGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTT
*
337108 TATTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
337149 CTATTTATAGTGTTGATAGGCACCATATGAAGGGTTTTTAGAATTAAAATAAATCAATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
337214 ATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
337279 TAAAAATGGATTAATAATGATATGATCTTGATTATGAGTTTTGGATC--ATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * *
337342 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGAAGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
* *
337407 TAAGAGGGAAATATGTATATTTAAATATGTGTACGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
*
337472 AGTGGAAAGTAAACGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* *
337537 AGGATGTTTGTGGTTGGCGTGGGCAATGATTGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
337602 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* * **
337666 CCCTCTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * * *
337731 ACCTATAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
* * *
337795 ATTATACAAAAAGTTCTTAGTACAAATACCGTGGAGGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
337835 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
337900 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
337965 TGAAAATGGATGACTAATGATATGATCTCGATTATGTGTTTCGGATCATATATATGATTACCCAA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * **
338030 TCTTGATTCTAGTAAGAACTTCACAGTGCTTTTATTTAAGACAAAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
338095 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
261 AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
* *
338160 GTGGAAAGTAAATTAAAGAAGTGTGGTGATGATAGTTGTTGATTGGATGTAAGGAAAATGGTAAA
326 GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
338225 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
391 GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
*
338290 ATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
456 ATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
* * * *
338355 CACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTCAA-AA-TCTAG
521 CACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATG--AAGAATTCAAG
* *
338418 ACCGACAAGAAACTGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTT
*
338482 TATTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * *
338523 CTATTTATAGTGTTGATAGGCACCATATGAAGGGTTTTTAGAATTAAAATAAATCAATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
338588 ATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
338653 TAAAAATGGATTAATAATGATATGATCTTGATTATGAGTTTTGGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * *
338718 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTGATTGAAGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
* *
338783 TAAGAGGGAAATATGTATATTTAAATATGTGTACGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
*
338848 AGTGGAAAGTAAACGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* *
338913 AGGATGTTTGTGGTTGGCGTGGGCAATGATTGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
338978 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTTATAGAGGGTGGAACATGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* * **
339042 CCCTCTAGCTATAGTAGAGCTAGGAATCAACGCTATAACAAGATGAAATGGATGAAGGCTTCAAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* * * * *
339107 ACCTATAAGAAACCGATAAAGTTCTAA-CCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
* * *
339171 ATTATACAAAAAGTTCTTAGTACAAATACCGTGGAGGTGC
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * **
339211 CTATTTATAGTGTTGATAGGCACTATGTGAATAGTTTTTACAATTAAAATAAAACAATCTTCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * *
339276 ATACAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATAGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * * *
339341 TGAAAATGGATGACTAATGATATGATCTTGATTATGTGTTTCAGATCATATATATGATT-ACCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCG-
* **
339405 ATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTTAAGACAAAAAAATGTACAAACAACGTT
195 ATCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGAC-TGAAAATGTACAAACAACGTT
*
339470 ATAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATG
259 ATAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATG
* * *
339535 AAGTGGAAAGTAAATTAAAGAAATGTAGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTA
324 AAGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTA
* *
339600 AAGGATGTTTGGGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGATCCTCTAACT
389 AAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
* *
339665 ATATATTAGTTAGAAACCAACAATATACTAAAGATGGAATCAAAGTGATAGAGGGTGGAACGTGA
454 ATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* * * ** * *
339730 CCCACAAGCTATTGTAGAGCTAGGAACCAAAGCTATAACAAGATGAAATGGATGTTGAAATCTAG
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAG
* *
339795 ACCGACAAGAAACTGATAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAGAA-AGTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCA-AAGAGTT
*
339859 TATTATGCAAAAAGGTCTTAGTACAAATGCCATGGAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * * * * *
339900 CTATTTATAGTGTTGATAGGCACTATATGAAGGGTTTTTAGATTTAAAATAAATCAATGACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * *
339965 ATGAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTGTCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * *
340030 TAAAAATGGATTAATAATGATATGATCTCGATTATGAGTTTTGGATCATATATATGATTGCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
* * * *
340095 TCTTGATTCTAGTAAGAAAATTCACAGTGCTTTAATTGAAGACTGGAAATGTACAAACAACGTTA
196 TCTTGATTCTAGTAAG-AACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTA
*
340160 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAACGATAGAATGAAGATGA
260 TAAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
340225 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
340290 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
*
340355 TAT-TCGAGTTAGAAACCAACATTATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
455 TATAT-GAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* *
340419 CCCACTAGCTATAGTAGAACTAGGAACCAAAGCTATAACAAGATGAAATGGATGACA-AATTCAA
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGA-AGAATTCAA
* * * * * * * *
340483 GACAGACAAGAAACTGATAGAGTTCTAATCTAAGAATTAAAATGAAAGCAAACCTTCATAGAGTT
583 GACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTT
*
340548 TATTATGCAAAAAGTTCTTAGTACAAATGCAATGGAGGTGC
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * *** * * * *
340589 CTATCTATAGTGCTGATACAAACCATATGAAGATTTTTTACAATAAAAATAAAACAATGATCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
** * * *
340654 ATAAAATTTAATTCAATTAAATGACTTGTCATTCTTCTTACACTTTGATGGTTTCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * ** *
340719 TGAAAAAGGATTAAGAATGATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCTA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
*
340784 TCTTGATTCTAGTAAGAACTTCGTAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* * * * *
340849 AAGAAGGGAAATATGTATATTTAAATATGTGTATAAAATTAATTGAAATGATATAATGAAGTTGA
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGA
* ** *
340914 AATGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAAT-G--A
325 AGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAA
* * * * * *
340976 AGGATGCTTGTGGATGGCATGGAGAATGATAGT-ATTCAAAGGATGGATTGTGACCCTCGAACAA
390 AGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTA
* * *
341040 TATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGATGTGATAGAGGGTGGAACGTAAC
455 TATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGAC
* * * *
341105 ACAATAGCTATAGTAGAGCTAGAAACCAACGCTATAATAAGATGAAATGGATGAA-AACTTCAAG
520 CCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAA-TTCAAG
*
341169 ATCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
584 ACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTT
* * * * * * **
341234 ATTAAGAAAAAAGTTCTTAGTACAAATGTCGTGCATGTTA
649 ATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * *
341274 CTATTTATAGTGTTGATGGGCAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
*
341339 ATGCAATTTGATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
341404 TGAAAATGGATGAATAATTATATGATCTCGATTTTGAGTTTCAGATCATATATATGATTGTCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
*
341469 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAATATGTACAAACAACGTTAT
196 TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
* *
341534 AAGAAGGGAAATATGTATATTTAAATATATGTATGAAAGTAATGGAAATGAT-GTAATGAAGTTG
261 AAG-AGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAG-AATGAAGATG
** * *
341598 AAGTGGATTGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTG
324 AAGTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTA
* * * * * *
341663 AAGGATGCTTGTGGATGCCATGGAGAATGATAGT-ATTCAAAGGATGGATTATGACCCTCTAACT
389 AAGGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACT
* * *
341727 ATATATGAGTTAGGAACCAACAATATACTAAAGATGGAATCGATGTGATAGAGGGTGGAACGTAA
454 ATATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGA
* * * * *
341792 CACACTAGCTATAGTAGAGCTAGGAACCAACGCTACAATAAGATAAAATGGATGAA-AGCTTCAA
519 CCCACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGA-ATTCAA
* * * *
341856 GATCGACAAGAAATCGATTGAGTTCTAATCCAAGAACTAAAATGAATGCAATCATTCAAAGAGTT
583 GACCGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTT
* * * * * **
341921 TATTATGAAAAAATTTCTTAGTACAAATGTCGTGCAGGTTA
648 TATTATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
* * *
341962 TTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAA
1 CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
* * * * *
342027 ATACAATTTAATTCAATTCAATGACTTGTCATTCTTCTTACCCTTTGATGGTTCCCCGTGTAGAT
66 ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
* * * *
342092 TGAAAATGGATGAATAATGATATGATCTTGATTATGAGTTTCAGATCATATATACGATTTCCCGA
131 TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
342157 CCACCAAGTT
Statistics
Matches: 16350, Mismatches: 1548, Indels: 289
0.90 0.09 0.02
Matches are distributed among these distances:
649 2 0.00
650 179 0.01
651 381 0.02
652 2 0.00
654 2 0.00
655 1 0.00
658 2 0.00
662 2 0.00
664 1 0.00
665 5 0.00
669 5 0.00
671 6 0.00
675 5 0.00
676 1 0.00
678 2 0.00
682 2 0.00
684 4 0.00
685 1989 0.12
686 438 0.03
687 2778 0.17
688 4548 0.28
689 5258 0.32
690 426 0.03
691 311 0.02
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (688 bp):
CTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATAAAACAATCACCTAA
ATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGAT
TGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCGGATCATATATATGATTGCCCGA
TCTTGATTCTAGTAAGAACTTCGCAGTGCTTTGATTGAAGACTGAAAATGTACAAACAACGTTAT
AAGAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATGAAGATGAA
GTGGAAAGTAAATGAAAGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTAAA
GGATGTTTGTGGTTGGCGTGGACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTAT
ATATGAGTTAGAAACCAACAATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACC
CACTAGCTATAGTAGAGCTAGGAACCAACGCTATAACAAGATGAAATGGATGAAGAATTCAAGAC
CGACAAGAAACCGATAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTAT
TATGCAAAAAGTTCTTAGTACAAATGCCATGGAGGTGC
Found at i:331308 original size:20 final size:23
Alignment explanation
Indices: 331252--331308 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
331242 AAATATGTGT
331252 ATGAAAGTAA-TGGAAACGATAGA
1 ATGAAAG-AAGTGGAAACGATAGA
331275 ATGAAGATGAAGTGGAAA-G-TA-A
1 ATGAA-A-GAAGTGGAAACGATAGA
331297 ATGAAAGAAGTG
1 ATGAAAGAAGTG
331309 TGGTGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 6 0.19
23 7 0.23
24 4 0.13
25 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.18
Consensus pattern (23 bp):
ATGAAAGAAGTGGAAACGATAGA
Found at i:332684 original size:20 final size:23
Alignment explanation
Indices: 332628--332684 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
332618 AAATATGTGT
332628 ATGAAAGTAA-TGGAAACGATAGA
1 ATGAAAG-AAGTGGAAACGATAGA
332651 ATGAAGATGAAGTGGAAA-G-TA-A
1 ATGAA-A-GAAGTGGAAACGATAGA
332673 ATGAAAGAAGTG
1 ATGAAAGAAGTG
332685 TGGTGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 6 0.19
23 7 0.23
24 4 0.13
25 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.18
Consensus pattern (23 bp):
ATGAAAGAAGTGGAAACGATAGA
Found at i:333369 original size:20 final size:23
Alignment explanation
Indices: 333313--333369 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
333303 TTAAATGTGT
333313 ATGAAAGTAA-TGGAAACGATAGA
1 ATGAAAG-AAGTGGAAACGATAGA
333336 ATGAAGATGAAGTGGAAA-G-TA-A
1 ATGAA-A-GAAGTGGAAACGATAGA
333358 ATGAAAGAAGTG
1 ATGAAAGAAGTG
333370 TGGTGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 6 0.19
23 7 0.23
24 4 0.13
25 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.18
Consensus pattern (23 bp):
ATGAAAGAAGTGGAAACGATAGA
Found at i:334745 original size:20 final size:23
Alignment explanation
Indices: 334689--334745 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
334679 AAATATGTGT
334689 ATGAAAGTAA-TGGAAACGATAGA
1 ATGAAAG-AAGTGGAAACGATAGA
334712 ATGAAGATGAAGTGGAAA-G-TA-A
1 ATGAA-A-GAAGTGGAAACGATAGA
334734 ATGAAAGAAGTG
1 ATGAAAGAAGTG
334746 TGGTGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 6 0.19
23 7 0.23
24 4 0.13
25 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.18
Consensus pattern (23 bp):
ATGAAAGAAGTGGAAACGATAGA
Found at i:336121 original size:20 final size:23
Alignment explanation
Indices: 336065--336121 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
336055 AAATATGTGT
336065 ATGAAAGTAA-TGGAAACGATAGA
1 ATGAAAG-AAGTGGAAACGATAGA
336088 ATGAAGATGAAGTGGAAA-G-TA-A
1 ATGAA-A-GAAGTGGAAACGATAGA
336110 ATGAAAGAAGTG
1 ATGAAAGAAGTG
336122 TGGTGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 6 0.19
23 7 0.23
24 4 0.13
25 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.18
Consensus pattern (23 bp):
ATGAAAGAAGTGGAAACGATAGA
Found at i:340248 original size:20 final size:23
Alignment explanation
Indices: 340192--340248 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
340182 AAATATGTGT
340192 ATGAAAGTAA-TGGAAACGATAGA
1 ATGAAAG-AAGTGGAAACGATAGA
340215 ATGAAGATGAAGTGGAAA-G-TA-A
1 ATGAA-A-GAAGTGGAAACGATAGA
340237 ATGAAAGAAGTG
1 ATGAAAGAAGTG
340249 TGGTGATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 6 0.19
21 1 0.03
22 6 0.19
23 7 0.23
24 4 0.13
25 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.30, T:0.18
Consensus pattern (23 bp):
ATGAAAGAAGTGGAAACGATAGA
Found at i:347082 original size:689 final size:686
Alignment explanation
Indices: 343687--347251 Score: 5700
Period size: 688 Copynumber: 5.2 Consensus size: 686
343677 GAACTGTATC
* * *
343687 AGTTTATTATGAAAAAGAGTTCTTAGTACAAATATCGTGGAGG-TGCCTATTTATGGTGTTGATA
1 AGTTTATTATGAAAAA-AGTTCTTAGTACAAATGTCGTGCAGGTTG-CTATTTATAGTGTTGATA
* * * *
343751 GGCACCATATGAAGAGCTTTTACAATTAAAATAAAACAATCTCCTAAATACAATTTAATTCAATT
64 GGCAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATT
* * ***
343816 AAATGACTTGTCATTCTTCAAACCTTTTGATGGTTGCCCATGTAGATTGAAAACAAATGAATAAT
129 AAATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAAT
*
343881 GATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTATTAAGAA
194 GATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAA
* * * *
343946 CTTCGTAGTGCTTTGATTTAAGGCTGAAAATTTACAAACAACGTTATAAGAAGGGAAACATGTAT
259 CTTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTAT
* * *
344011 ATTTTAAATATGTGTATGAAAGTAGTGAAAATGATATAATGAAGTTCAAGTGGATTGTAAATGAA
324 A-TTTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAA
* *
344076 AGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTAGG
388 AGAAGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGG
* * * * *
344141 CATGGACAATGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACC
453 CATGGAGAATGATAGT-ATTCAAAGGAT-GATTGTGACCCTCTAACTATATATGAGTTAGGAACC
* * *
344206 AACAATATACTAATGATGGAATCGAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGA
516 AACAATATACTAAAGATGGAATC-AAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGA
*
344271 GCTAGGAACCAACGCTATAACAAGATGAAATGGATGACGAA--TTCAAGATCGACAAGAAACCGA
580 GCTAGGAACCAACGCTATAATAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGA
*
344334 TAGAGTTTTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
643 TAGAGTTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
*
344378 AGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAATGTTGATAGG
1 AGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
*
344443 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATGCAATTTAATTCAATTAA
66 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATTAA
* *
344508 ATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATATTGG
131 ATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGA
* * *
344573 TATGATCTCGGTTATGAGTTTTGGATCATATATATGATTGTCCGATCTTGATTCTAGTAAGAACT
196 TATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACT
* *
344638 TCACAGTGCTTTGATTGAAGACT-AAATATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
261 TCGCAGTGCTTTGATTTAAGACTGAAA-ATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
* *
344702 TTTAAATATGTGTATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAG
325 TTTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAG
* * * * *
344767 AAGTGTGGTGGTGATAGTGGTTGATTTGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCG
390 AAGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCA
* * * *
344832 TGGAAAATGATAGTAATTCAAAGTATGGTTGTGACCCTCTAACTATATATGAGTTAGAAACCAAC
455 TGGAGAATGATAGT-ATTCAAAGGATGATTGTGACCCTCTAACTATATATGAGTTAGGAACCAAC
*
344897 AATATACTAAAGATGGAATCAAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGTT
519 AATATACTAAAGATGGAATC-AAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCT
* *
344962 AGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATTGATAAGAAACCGATAGAG
583 AGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAG
345027 TTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
648 TTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
* * *
345066 AGTTTATTATGAAAAAATTTCTAAG-ATGAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAG
1 AGTTTATTATGAAAAAAGTTCTTAGTA-CAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAG
*
345130 GCAACATATGAAGTGTTTTTACAATTAAAATAAAAAAATCACCTAAATACAATTTAATTCAATTA
65 GCAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATTA
* *
345195 AATGACTTTTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATC
130 AATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATG
345260 ATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAC
195 ATATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAAC
* * * *
345325 TTCGTAGTGCTTTGATTTAAGACTGAATATGTTCAAACAACATTATAAGAAGGGAAATATGTATA
260 TTCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
345390 TTTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAG
325 TTTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAG
* * *
345455 AAGTGTGGTGATGATAGTAGTTGATTGGATGTAACGAAAATGGTGAAGGATGCTTGTGGATGGCA
390 AAGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCA
*
345520 TGGAGAATGATAGTATTCAAAGGATGAATTGTGACCCTCTAACTATATATGAGTTTGGAACCAAC
455 TGGAGAATGATAGTATTCAAAGGATG-ATTGTGACCCTCTAACTATATATGAGTTAGGAACCAAC
* *
345585 AATATACTAAAGATGGAATCAATGTGATAGAGGGTGGAACGTAACACACTAGCTATAATAGAGCT
519 AATATACTAAAGATGGAATCAA-GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCT
* * *
345650 AGGAACCAACGCTATAATAAGATAAAATGGATGAAAGCTTCAAGATCGACAAGAAATCGATTGAG
583 AGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAG
*
345715 TTCTAATCCAAAAACTAAAATGAATGCAATCTTTCAAAG
648 TTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
*
345754 AGTTTATTATGAAAAAATTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
1 AGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
*
345819 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTGAATTAA
66 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATTAA
* *
345884 ATGACTTTTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATCA
131 ATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGA
345949 TATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACT
196 TATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACT
* * *
346014 TCGCAGTGCTTTGATTTAAGACTGAATATGTTCAAACAACATTATAAGAAGGGAAATATGTATAT
261 TCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATAT
346079 TTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGA
326 TTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGA
* * * *
346144 AGTGTGGTGATGATAGTAGTTGATTGGATGTAACGAAAATGATGAAGGATGCTTGTGGATGGCAT
391 AGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCAT
* * *
346209 GGAGAATGATAGTATTCAAAGGATGAATTGTGACCCTCTAACTATATATGAGTTTGGATCCATCA
456 GGAGAATGATAGTATTCAAAGGATG-ATTGTGACCCTCTAACTATATATGAGTTAGGAACCAACA
*
346274 ATATACTAAAGATGGAATCAATGTGATAGAGGGTGGAACGTAACACACTAGCTATAGTAGAGCTA
520 ATATACTAAAGATGGAATCAA-GTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTA
* ** *
346339 GGAACCAACGCTATAATAAGATAAAATGGATGAAAGCTTCAAGATCGACAAGAAATTGATTGAGT
584 GGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGT
346404 TCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
649 TCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
*
346442 AGTTTATTATGAAAAAATTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
1 AGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
*
346507 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATTCA
66 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATTAA
* * *
346572 ATGACTTGTCATTCTTCTTACCCTTTGATGGTTGCCCGTATAGATTGAAAATGGATGAATAATGA
131 ATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGA
* * * * * *
346637 TTTGATATCGATTATGAGTTTCAGATCATATATACGATTTCCTGATCTTGATTCTAGTAAGAACT
196 TATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACT
* * *
346702 TCGGGAATGCTTTGATTTAAGACTGAAAATGTACAAACCACGTTATAAGAAGGGAAATATGTATA
261 TC-GCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATA
* * * * *
346767 TTTAAATATGTGTATGTAGGTAATGGAAATGATAGAATGAATTTGAAGTGGATTGTAAAAGAAAG
325 TTTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAG
* *
346832 AAGTGTGGTGATGATAGTGGTTAATTGGATGTAACAAAAATGGTGAAGGATGTTTGTGGTTGGCA
390 AAGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCA
** * * *
346897 TGGAGAATGATAGTATTCAGCGGATAGATTGAGACCTTCTAACTATATATGACTTAGGAACCAAC
455 TGGAGAATGATAGTATTCAAAGGAT-GATTGTGACCCTCTAACTATATATGAGTTAGGAACCAAC
*
346962 AATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATTGTAGAGCT
519 AATATACTAAAGATGGAATC-AAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCT
* * *
347027 AGGAACCAATGCTATAACAAAATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAG
583 AGGAACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAG
* * *
347092 TTCTAATCCAAGAACTAAAATGAATGCAATTTTTAAAAA
648 TTCTAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
* * * *
347131 AGTTTATTATGAAAAAAGTTCTTAGTACAAATATCGTGGAGGTTCCTATTTATGGTGTTGATAGG
1 AGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
* * * * *
347196 CACCATATGAAGAGCTTTTACAATTAAAATAAAATAATCTCCTAAATACAATTTAA
66 CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAA
347252 ATATGAAGAG
Statistics
Matches: 2699, Mismatches: 163, Indels: 26
0.93 0.06 0.01
Matches are distributed among these distances:
686 2 0.00
687 14 0.01
688 1743 0.65
689 644 0.24
690 278 0.10
691 18 0.01
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (686 bp):
AGTTTATTATGAAAAAAGTTCTTAGTACAAATGTCGTGCAGGTTGCTATTTATAGTGTTGATAGG
CAACATATGAAGTGTTTTTACAATTAAAATAAAACAATCACCTAAATACAATTTAATTCAATTAA
ATGACTTGTCATTCTTCTAACCCTTTGATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGA
TATGATCTCGATTATGAGTTTTAGATCATATATATGATTGCCCGATCTTGATTCTAGTAAGAACT
TCGCAGTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATAT
TTAAATATGTGTATGAAAGTAATGGAAATGATATAATGAAGTTGAAGTGGATTGTAAATGAAAGA
AGTGTGGTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGGATGTTTGTGGTTGGCAT
GGAGAATGATAGTATTCAAAGGATGATTGTGACCCTCTAACTATATATGAGTTAGGAACCAACAA
TATACTAAAGATGGAATCAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGG
AACCAACGCTATAATAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTC
TAATCCAAGAACTAAAATGAATGCAATCTTTCAAAG
Found at i:347787 original size:570 final size:568
Alignment explanation
Indices: 346709--347821 Score: 1733
Period size: 570 Copynumber: 2.0 Consensus size: 568
346699 ACTTCGGGAA
* *
346709 TGCTTTGATTTAAGACTGAAAATGTACAAACCACGTTATAAGAAGGGAAATATGTATATTTAAAT
1 TGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAAT
* * * * *
346774 ATGTGTATGTAGGTAATGGAAATGATAGAATGAATTTGAAGTGGATTGTAAAAGAAAGAAGTGTG
66 ATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAAAGAAAGAAGTGTG
*
346839 GTGATGATAGTGGTTAATTGGATGTAACAAAAATGGTGAAGGATGTTTGTGGTTGGCATGGAGAA
131 GTGATGATAGTGGTTAATTGGATGTAACAAAAATGGTGAAGGATGTTTGTGGTTGGCATGGACAA
** * * *
346904 TGATAGTATTCAGCGGATAGATTGAGACCTTCTAACTATATATGACTTAGGAACCAACAATATAC
196 TGATAGTATTCAAAGAATAGATTGAGACCCTCTAACTATATATGACTTAGAAACCAACAATATAC
* *
346969 TAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCTATTGTAGAGCTAGGAACC
261 TAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCAATAGTAGAGCTAGGAACC
*
347034 AATGCTATAACAAAATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTAAT
326 AACGCTATAACAAAATGAAATGGATGAAA-CTTCAAGATCGACAAGAAACCGATAGAGTTCTAAT
*
347099 CCAAGAACTAAAATGAATGCAATTTTTAAAAAAGTTTATTATGAAAAAAGTTCTTAGTACAAATA
390 CCAAGAACTAAAATGAATGCAATCTTTAAAAAAGTTTATTATGAAAAAAGTTCTTAGTACAAATA
* * *
347164 TCGTGGAGGTTCCTATTTATGGTGTTGATAGGCACCATATGAAGAGCTTTTACAATTAAAATAAA
455 TCGTGCAGGTTCCTATTTATAGTGTTGATAGGCAACATATGAAGAGCTTTTACAATTAAAATAAA
* *
347229 ATAATCTCCTAAATACAATTTAAATATGAAGAGCTTTTACTATTTATGG
520 ACAATCACCTAAATACAATTTAAATATGAAGAGCTTTTACTATTTATGG
*
347278 TGCTTTGATTTAAGACTGAAAATTTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAAT
1 TGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAAT
* * * *
347343 ATGTGTATGAAAGTAGTGAAAATGATATAATGGAGTTCAAGTGGATTGTAAATGAAAGAAGTGTG
66 ATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAAAGAAAGAAGTGTG
* ** * *
347408 GTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTTGTTGGCGTGGACAA
131 GTGATGATAGTGGTTAATTGGATGTAACAAAAATGGTGAAGGATGTTTGTGGTTGGCATGGACAA
* * * * *
347473 TGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATATA
196 TGATAGT-ATTCAAAGAATAGATTGAGACCCTCTAACTATATATGACTTAGAAACCAACAATATA
* * * * *
347538 CTAATGATGGGATTGAAGTGATGGAGGGTGGAACGTGACCCACTAGCAATAGTAGAGCTAGGAAC
260 CTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCAATAGTAGAGCTAGGAAC
*
347603 CAACGCTATAACAAGATGAAATGGATGACGAA-TTCAAGATCGACAAGAAACCGATAGAGTTCTA
325 CAACGCTATAACAAAATGAAATGGATGA--AACTTCAAGATCGACAAGAAACCGATAGAGTTCTA
* *
347667 ATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAA
388 ATCCAAGAACTAAAATGAATGCAATCTTTAAAAAAGTTTATTATGAAAAAAGTTCTTAGTACAAA
* * * *
347732 TGTCGTGCAGGTTGCTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATTAAAATA
453 TATCGTGCAGGTTCCTATTTATAGTGTTGATAGGCAACATATGAAGAGCTTTTACAATTAAAATA
*
347797 AAACAATCACCTAAATGCAATTTAA
518 AAACAATCACCTAAATACAATTTAA
347822 TTCAATTAAA
Statistics
Matches: 491, Mismatches: 50, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
569 183 0.37
570 306 0.62
572 2 0.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (568 bp):
TGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAAT
ATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAAAGAAAGAAGTGTG
GTGATGATAGTGGTTAATTGGATGTAACAAAAATGGTGAAGGATGTTTGTGGTTGGCATGGACAA
TGATAGTATTCAAAGAATAGATTGAGACCCTCTAACTATATATGACTTAGAAACCAACAATATAC
TAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTAACCCACTAGCAATAGTAGAGCTAGGAACC
AACGCTATAACAAAATGAAATGGATGAAACTTCAAGATCGACAAGAAACCGATAGAGTTCTAATC
CAAGAACTAAAATGAATGCAATCTTTAAAAAAGTTTATTATGAAAAAAGTTCTTAGTACAAATAT
CGTGCAGGTTCCTATTTATAGTGTTGATAGGCAACATATGAAGAGCTTTTACAATTAAAATAAAA
CAATCACCTAAATACAATTTAAATATGAAGAGCTTTTACTATTTATGG
Found at i:348601 original size:688 final size:689
Alignment explanation
Indices: 347277--354145 Score: 10672
Period size: 688 Copynumber: 10.0 Consensus size: 689
347267 ACTATTTATG
* *
347277 GTGCTTTGATTTAAGACTGAAAATTTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* * *
347342 TATGTGTATGAAAGTAGTGAAAATGATATAATGGAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
*
347407 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTTGTTGGCGTGGACA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* * *
347472 ATGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * * * *
347537 ACTAATGATGGGATTGAAGTGATGGAGGGTGGAACGTGACCCACTAGCAATAGTAGAGCTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
347602 CCAACGCTATAACAAGATGAAATGGATGACGAA--TTCAAGATCGACAAGAAACCGATAGAGTTC
326 CCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTC
*
347665 TAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACA
389 TAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACA
* *
347730 AATGTCG-TGCAGGTTG-CTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATTAA
454 AATGTCGTTG-AGG-TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAA
347793 AATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
517 AATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
* * * * * *
347858 ATGGTTTCCCATGTAGATTAAAAATGGATGAATATTGGTATGATCTCGGTTATGAGTTTTGGATC
582 ATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATC
347923 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
647 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* * *
347966 GTGCTTTGATTAAAGACTAAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* * *
348031 TATGTGTATGAAAGTAATGGAAATGATAGAATCAAGTTAAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
* * * *
348096 GGTGGTGATAGTGGTTGATTTGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGAAA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* *
348161 ATGATAGTAATTCAAAGGATGG-TTGTGACCGTCTAACTATATATGAGTTAAAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * * *
348225 ACTAAAGATGGAATCAAAGTGATTGAGGGAGGAACGTAACCCACTAGCTATAGTAGAGTTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
*
348290 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTATA
326 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
*
348355 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTGTGAAAAAAGTTCTTAGTACAAA
391 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAA
* *
348420 TATCGTTGAGGTGCCTATTTCTAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
456 TGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
* *
348485 AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCAAACCTTTTGATGG
521 AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGG
* *
348550 TTGCCCATGTCGATTGAAAACGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
586 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
*
348615 ATATGATTGCCCGATCTTGATTCTATTAAGAACTTCGCA
651 ATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* *
348654 GTGCTTTGATTTAAGACTGAAAATTTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* *
348719 TATGTGTATGAAAGTAGTGAAAATGATATAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
*
348784 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTTGTTGGCGTGGACA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* * *
348849 ATGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * *
348914 ACTAATGATGGGATCGAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
348979 CCAACGCTATAACAAGATGAAATGGATGACGAA--TTCAAGATCGACAAGAAACCGATAGAGTTC
326 CCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTC
*
349042 TAATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACA
389 TAATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACA
* *
349107 AATGTCG-TGCAGGTTG-CTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATTAA
454 AATGTCGTTG-AGG-TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAA
349170 AATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
517 AATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
* * * * * *
349235 ATGGTTTCCCATGTAGATTAAAAATGGATGAATATTGGTATGATCTCGGTTATGAGTTTTGGATC
582 ATGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATC
349300 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
647 ATATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
*
349343 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACATTATAAGAAGGGAAATATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* * *
349408 TATGTGTATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
* * * *
349473 GGTGGTGATAGTGGTTGATTTGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGAAA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* *
349538 ATGATAGTAATTCAAAGGATGG-TTGTGACCGTCTAACTATATATGAGTTAAAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * * *
349602 ACTAAAGATGGAATCAAAGTGATTGAGGGAGGAACGTAACCCACTAGCTATAGTAGAGTTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
* *
349667 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGCTATA
326 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
*
349732 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTGTGAAAAAAGTTCTTAGTACAAA
391 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAA
* * *
349797 TATCGTTGAGGTGCCTATTTCTAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTTAAATA
456 TGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
* *
349862 AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCAAACCTTTTGATGG
521 AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGG
* *
349927 TTGCCCATGTCGATTGAAAACGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
586 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
*
349992 ATATGATTGCCCGATCTTGATTCTATTAAGAACTTCGCA
651 ATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* *
350031 GTGCTTTGATTTAAGACTGAAAATTTACAAACAACGTTATAAGAAGGGAAACATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* ** *
350096 TATGTGTATGAAAGTAGTGAAAATGATTTAATGAAGTTCAAGTGGATTGTAAATAAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
*
350161 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTTGTTGGCGTGGACA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* * *
350226 ATGATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * *
350291 ACTAATGATGGGATCGAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
* *
350356 CCAACGCTATAACAAGATGAAATGGATG-ACGATTTCAAGATCGACAAGAAACCGATAGAGTTCT
326 CCAACGCTATAACAAGATGAAATGGATGAAAG-CTTCAAGATCGACAAGAAACCGATAGAGTTCT
*
350420 AATCCAAGAACTAAAATGAATGCAATCTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAA
390 AATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAA
* *
350485 ATGTCG-TGCAGGTTG-CTATTTATAGTGTTGATAGGCAACATATGAAGTGTTTTTACAATTAAA
455 ATGTCGTTG-AGG-TGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAA
*
350548 ATAAAACACTCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGA
518 ATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGA
* * * * * *
350613 TGGTTTCCCATGTAGATTAAAAATGGATGAATATTGGTATGATCTCGGTTATGAGTTTTGGATCA
583 TGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCA
*
350678 TATATATTATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
648 TATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* * * *
350720 GTGCATTGATTTAAGACTGAAAATGTACAAACAACATTATAAGAAGTGAATTATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* * *
350785 TATGTGTATGAAAGTAATGGAAATGATAGAATCAAGTTGAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
* * * *
350850 GGTGGTGATAGTGGTTGATTTGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTCGGCGTGGAAA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
*
350915 ATGATAGTAATTCAAAGGATGG-TTGTGACCCTCTAACTATATATGAGTTAAAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * * *
350979 ACTAAAGATGGAATCAAAGTGATAGAGGGAGGAACGTAACCCACTAGCTATAGTAGAGTTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
*
351044 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTATA
326 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
*
351109 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTACAAA
391 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAA
* *
351174 TATCGTTGAGGTGCCTATTTCTAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
456 TGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
* * * * *
351239 AAACAATCACCTAAATACAATTTAATTCAATTCAATGACTTGTCATTATTCTTATCCTTTGATGG
521 AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGG
*
351304 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTCAGATCATAT
586 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
*
351369 ATATGATTACCCGATCTTGATTCTAGTAAGAACTTCGCA
651 ATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* * * * *
351408 ATTCTTTGATTTAAGGCTAAAAATGTAGAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* * * * * * *
351473 TATGTGTATGTAGGTAATGGAAATGATAGAATAAAGTTGAAGTAGATTGTAAAAGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
* * * * *
351538 GGTGATGATAGTGGTTAATTGGATGTAACGAAAATGGTGAAGGATGTTTGCGGTTAGCGTGGAGA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* * * * *
351603 ATGATAGT-ATTCAACGGATGGATTGTGACCTTATAACTATATATGAGTTAGGAACGAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * * *
351667 ACTAAAGATGGAATCGAAGTGATAGAGGGTGGAATGTAACCCACTAGCTATTGTATAGCTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
** * *
351732 CCAATTCTATAATAAGAAGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
326 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
* * *
351797 ATCCAAGAACTAAAATGAATGGAAT-TTTTGAATGAGTTTATTATGAAAATAGTTCTTAGTACAA
391 ATCCAAGAACTAAAATGAATGCAATCTTTT-AAAGAGTTTATTATGAAAAAAGTTCTTAGTACAA
*
351861 ATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAAT
455 ATGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAAT
* * * * *
351926 AAAATAATCTCCTAAATACAATTTAATTCAATTAAATGACTTGTCATTCTTCAAACCTTTTGATG
520 AAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATG
* *
351991 GTTGCCCATGTAAATTGAAAACGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATA
585 GTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATA
** *
352056 TATATGATTGCCCGATCTTGATTCTTTTAATAACTTCGCA
650 TATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* * * *
352096 GTGCTTTGATTTAAGATTGAAAATTTACAAAGAACGTTTTAAGAAGGGAAATATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* *
352161 TATGTGTATGAAAGTAGTGAAAATGATATAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
*
352226 GGTGGTGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* *
352291 ATCATGGTAATTCAAAGGATGG-TTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * *
352355 ACTAAAGATGGAATCAAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGTTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
* *
352420 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGAAAAGAAACCGATAGAGTTATA
326 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
* *
352485 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAGAAGTTCTTAGTAAAAA
391 ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAA
* * * *
352550 TATCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCACATAAAGAGTTTTTACAATTAAAATA
456 TGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
* * * * * * *
352615 AAATAATCAGCTAAATTCAATTTAATTCAATTCAATGACTTGTCATTATTCTTATCCTTTGATGG
521 AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGG
* * * **
352680 TTGCACATGTAGATTGAAAATGGATGAATAATGATATGATATCGGTTATGAGTTTCGGATCATAT
586 TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
352745 ATATGATTTG-CCGATCTTGATTCTAGTAAGAACTTCGCA
651 ATATGA-TTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* * * * *
352784 ATTCTTTGATTTAAGGCTAAAAATGTAGAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* * * * * *
352849 TATGTGTATGTAGGTAATGGAAATGATAGAATAAAGTTGAAGTGGATTGTAAAAGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
* * * * * *
352914 GGTGATGATAGTGGTTAATTGGATGTAACGAAAATGGTAAAGGATGTTTGCGGTTAGCGTGGAGA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* * * * *
352979 ATGATAGT-ATTCAACGGATGGATTGTGACCTTATAACTATATATGAGTTAGGAACGAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* * * * *
353043 ACTAAAGATGGAATCGAAGTGATAGAGGGTGGAATGTAACCCACTAGCTATTGTATAGGTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
** * *
353108 CCAATTCTATAATAAGAAGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
326 CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
* * *
353173 ATCCAAGAACTAAAATGAATGAAAT-TTTTGAATGAGTTTATTATGAAAATAGTTCTTAGTACAA
391 ATCCAAGAACTAAAATGAATGCAATCTTTT-AAAGAGTTTATTATGAAAAAAGTTCTTAGTACAA
* *
353237 ATGTCGTGGAGGTGCCTATATATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAAT
455 ATGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAAT
* * * * * *
353302 AAAATAATCTCCTAAGTACAATTTAATTCAATTAAATGAGTTGTCATTCTTC-AAACCTATTGAT
520 AAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCT-TTGAT
* * *
353366 GGTTGCCCATGTAAATTGAAAACGAATGAATAATGATATGATCTCGATTATGAGTTTTAGATCAT
584 GGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCAT
* ** *
353431 ATATATGATTGCCCGATATTGATTCTTTTAATAACTTCGCA
649 ATATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
* * * *
353472 GTGCTTTGATTTAAGATTGAAAATTTACAAAGAACGTTTTAAGAAGGGAAATATGTATATTTAAA
1 GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
* *
353537 TATGTGTATGAAAGTAGTGAAAATGATATAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
66 TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
353602 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
131 GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
* * * *
353667 ATCATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
196 ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
* *
353732 ACTAATGATGGAATCGAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAGGAA
261 ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
* *
353797 CCAACGCTATAACAAGATAAAATGGATGACGAA--TTCAAGATCGAAAAGAAACCGATAGAGTTC
326 CCAACGCTATAACAAGATGAAATGGATGA--AAGCTTCAAGATCGACAAGAAACCGATAGAGTTC
*
353860 TAATCCAAGAACTAAAATGAATGCAAT-TTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTAA
389 TAATCCAAGAACTAAAATGAATGCAATCTTTT-AAAGAGTTTATTATGAAAAAAGTTCTTAGTAC
* * *
353924 AAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCACATAAAGAGTTTTTACAATTAAA
453 AAATGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAA
* * * * * *
353989 ATAAAATAATCACCTAAATTCAATTTAATTCAATTCAATGACTTATCATTCTTCTTACCCTTTAA
518 ATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGA
* * * * * **
354054 TGGTTGCACATGTAGATTGAAAATGGATGAATATTGGTAAGATCTCGGTTATGAGTTTCGGATCA
583 TGGTTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCA
**
354119 TATATATGATTTACCGATCTTGATTCT
648 TATATATGATTGCCCGATCTTGATTCT
354146 CACATTTCTC
Statistics
Matches: 5624, Mismatches: 523, Indels: 66
0.91 0.08 0.01
Matches are distributed among these distances:
686 4 0.00
687 45 0.01
688 3667 0.65
689 1896 0.34
690 8 0.00
691 4 0.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (689 bp):
GTGCTTTGATTTAAGACTGAAAATGTACAAACAACGTTATAAGAAGGGAAATATGTATATTTAAA
TATGTGTATGAAAGTAATGAAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAGTGT
GGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGGACA
ATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAATAT
ACTAAAGATGGAATCGAAGTGATGGAGGGTGGAACGTAACCCACTAGCTATAGTAGAGCTAGGAA
CCAACGCTATAACAAGATGAAATGGATGAAAGCTTCAAGATCGACAAGAAACCGATAGAGTTCTA
ATCCAAGAACTAAAATGAATGCAATCTTTTAAAGAGTTTATTATGAAAAAAGTTCTTAGTACAAA
TGTCGTTGAGGTGCCTATTTATAGTGTTGATAGGCACCATATGAAGAGTTTTTACAATTAAAATA
AAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGATGG
TTGCCCATGTAGATTGAAAATGGATGAATAATGATATGATCTCGATTATGAGTTTTAGATCATAT
ATATGATTGCCCGATCTTGATTCTAGTAAGAACTTCGCA
Found at i:354744 original size:603 final size:603
Alignment explanation
Indices: 353599--354748 Score: 1888
Period size: 603 Copynumber: 1.9 Consensus size: 603
353589 ATGAAAGAAG
*
353599 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
1 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTCG
* * *
353664 ACAATCATGGTAATTTAAAGAATGGATTGTGACCCTCTAACTATATATGAGTTAGAAACCAACAA
66 ACAATCATAGTAATTCAAAGAATGGATTATGACCCTCTAACTATATATGAGTTAGAAACCAACAA
* *
353729 TATACTAATGATGGAATCGAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
131 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
* * *
353794 GAACCAACGCTATAACAAGATAAAATGGATGACGAATTCAAGATCGAAAAGAAACCGATAGAGTT
196 GAACCAACGCTATAACAAGATAAAATGGATGAAGAATTAAAGACCGAAAAGAAACCGATAGAGTT
* *
353859 CTAATCCAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTAA
261 CTAATCCAAGAACTAAAATGAAAGCAATTTTTCAAAGAGTTTATAATGAAAAAAGTTCTTAGTAA
* * *
353924 AAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCACATAAAGAGTTTTTACAATTAAA
326 AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCACAGAAAGAGTTTTTACAATTAAA
* * * *
353989 ATAAAATAATCACCTAAATTCAATTTAATTCAATTCAATGACTTATCATTCTTCTTACCCTTTAA
391 ATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTATCATTCTTCTAACCCTTTAA
* * *
354054 TGGTTGCACATGTAGATTGAAAATGGATGAATATTGGTAAGATCTCGGTTATGAGTTTCGGATCA
456 TGGTTGCACATGTAGATTGAAAATGGATGAATAATGATAAGATCTCGATTATGAGTTTCGGATCA
* *
354119 TATATATGATTTACCGATCTTGATTCTCACATTTCTCTGATTGAAGACTAAAAATGTACAAACAA
521 TATATATGATTGACCAATCTTGATTCTCACATTTCTCTGATTGAAGACTAAAAATGTACAAACAA
354184 CGTTATAAGAAGGATGTT
586 CGTTATAAGAAGGATGTT
354202 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTCG
1 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTCG
** * * * *
354267 ACAATGGTAGTAGTTCAAAGGATGGATTATGACCCTCTAACTATATTTGAGTTAGAAGCCAACAA
66 ACAATCATAGTAATTCAAAGAATGGATTATGACCCTCTAACTATATATGAGTTAGAAACCAACAA
354332 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
131 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
** * *
354397 GAACCAACGCTATAACAAGATAAAATGGATGAAGCCTTAAAGACCTACAAGAAACCGATAGAGTT
196 GAACCAACGCTATAACAAGATAAAATGGATGAAGAATTAAAGACCGAAAAGAAACCGATAGAGTT
*
354462 CTAATCCAAGAACTGAAATGAAAGCAATCTTTT-AAAGAGTTTATAATGAAAAAAGTTCTTAGTA
261 CTAATCCAAGAACTAAAATGAAAGCAAT-TTTTCAAAGAGTTTATAATGAAAAAAGTTCTTAGTA
* * * *
354526 CAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATAGAAAGATTTTTTACAATTAT
325 AAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCACAGAAAGAGTTTTTACAATTAA
* * *
354591 AATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
390 AATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTATCATTCTTCTAACCCTTTA
* *
354656 ATGGTTGCACATGTAGATTGAAAATGGATGAATAATGATATGATCTCTATTATGAGTTTCGGATC
455 ATGGTTGCACATGTAGATTGAAAATGGATGAATAATGATAAGATCTCGATTATGAGTTTCGGATC
*
354721 ATATATATGATTGCCCAATCTTGATTCT
520 ATATATATGATTGACCAATCTTGATTCT
354749 AGTAAGAACT
Statistics
Matches: 502, Mismatches: 44, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
603 498 0.99
604 4 0.01
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (603 bp):
TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTCG
ACAATCATAGTAATTCAAAGAATGGATTATGACCCTCTAACTATATATGAGTTAGAAACCAACAA
TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
GAACCAACGCTATAACAAGATAAAATGGATGAAGAATTAAAGACCGAAAAGAAACCGATAGAGTT
CTAATCCAAGAACTAAAATGAAAGCAATTTTTCAAAGAGTTTATAATGAAAAAAGTTCTTAGTAA
AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCACAGAAAGAGTTTTTACAATTAAA
ATAAAACAATCACCTAAATGCAATTTAATTCAATTAAATGACTTATCATTCTTCTAACCCTTTAA
TGGTTGCACATGTAGATTGAAAATGGATGAATAATGATAAGATCTCGATTATGAGTTTCGGATCA
TATATATGATTGACCAATCTTGATTCTCACATTTCTCTGATTGAAGACTAAAAATGTACAAACAA
CGTTATAAGAAGGATGTT
Found at i:356213 original size:678 final size:669
Alignment explanation
Indices: 354202--356024 Score: 2255
Period size: 687 Copynumber: 2.7 Consensus size: 669
354192 GAAGGATGTT
*
354202 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTCG
1 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
* * * *
354267 ACAATGGTAGTAGTTCAAAGGATGGATTATGACCCTCTAACTATATTTGAGTTA-GAAGCCAACA
66 ACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGGAA-CCAACA
354331 ATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTA
130 ATATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTA
* *
354396 GGAACCAACGCTATAACAAGATAAAATGGATGAAGCCTTAAAGACCTACAAGAAACCGATAGAGT
195 GGAACCAACGCTATAACAAGATGAAATGGATGAAGCCTTCAAGACCTACAAGAAACCGATAGAGT
* * * *
354461 TCTAATCCAAGAACTGAAATGAAAGCAATCTTTTAAAGAGTTTATAATGAAAAAAGTTCTTAGTA
260 TCTAATCCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTA
* * * *
354526 CAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCATAGAAAGATTTTTTACAATTAT
325 CAAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCCTATAAAGAGTTTTTACAATTAA
354591 AATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
390 AATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
*
354656 ATGGTTGCACATGTAGATTGAAAATGGATGAATAATGATATGATCTCTAT-TATGAGTTTCGGAT
455 ATGGTTGCACATGTAGATTGAAAATGGATGAAT--TGGTA-GA-C-CTATGTATGAGTTTCGGAT
* * ** * * * *
354720 CATATATATGATTGCCCAAT-CTTGATTCTAGTAAGAACTTCGTAGTGCTTTGACTGAGGACTGA
515 C---TATATGAAT--CAAATGC-T-A--C-A-TTTGAA-TT-GAAGTGCTCTGACTGAAGA-AGA
* * * * *** * * *
354784 AAATTTACAAACAACAT-TTTAAGAAGGGAAATATGTATATTTAAATATATGTATGAATGTAGTG
566 AAATTGATAAA-AA-ATGTATAAGAA-GGAAATATGTATATTTAAATAGAAAAAGGAA-GGAATG
* *
354848 TAAATGATAGAATGAAGTTCAAGTGGATTGTAAATGAAAGAAG
627 AAAATGATAGAATAAAGTTCAAGTGGATTGTAAATGAAAGAAG
*
354891 TGTGGTGATGATAATGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
1 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
* * * * * * *
354956 ACAATGATGGTAATTTAAAGAATTGATTGTGACCCTATAACTATATATGAGTTAGAAACAAACAA
66 ACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGGAACCAACAA
* *
355021 TATACTAATGATGGAATCGAAGTGATGGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTA-
131 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
** * *
355085 G-ACCAACGCTATAACAAGATGAAATGGATGAAGTATTCAAGATCGACAAGAAACCGATAGAGTT
196 GAACCAACGCTATAACAAGATGAAATGGATGAAGCCTTCAAGACCTACAAGAAACCGATAGAGTT
* * * *
355149 CTAATCTAAGAACTAAAATGAATGCAATTTTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTAA
261 CTAATCCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTAC
* * * * *
355214 AAATGTCGTGGAGGTGCCTATTTATAGTGTTGATAGGCACCAC-ATGAAGTGTTTTTACATTTAA
326 AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACC-CTATAAAGAGTTTTTACAATTAA
* * ** * *
355278 AATAAAATAATCACCTAAATGCAATTTAATTCAATCCAATGACTTGTCATTCTTCTTACCCTTTA
390 AATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTG
* **
355343 ATGGTTGCACATGTAGATTGAAAATGGATGAATATTGGTATGATCTCGGTTATGAGTTTCGGATC
455 ATGGTTGCACATGTAGATTGAAAATGGATG-A-ATTGGTA-GACCTATG-TATGAGTTTCGGATC
* ** * * * * ** *
355408 -ATAT-ATATGATTTGC-ATATCTTGATTCTCACAGTGCTCTGATTGAAGACTAAAAATG-TACA
516 TATATGA-ATCAAATGCTACAT-TTGAAT-TGA-AGTGCTCTGACTGAAGAAGAAAATTGATA-A
* *** * * *
355469 AACAACGTTATAAGAAGGGAAATATGTATATTTAAATATGTGTATGAAAGTAATGAAAATGATAG
576 AA-AATG-TATAAGAA-GGAAATATGTATATTTAAATA-GAAAAAGGAAGGAATGAAAATGATAG
* *
355534 AATAAAGTTGACGTGGATTGTAAATGAAAGAAG
637 AATAAAGTTCAAGTGGATTGTAAATGAAAGAAG
* * * *
355567 TGTGCTGATGATAGTGGTTGATTGGATGTAACGAAAATGGTGAAGCATGTTTGTGGTTGGCATGG
1 TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
* ***
355632 AGAATGATAGTAATTCAAAGGATGGATTGTGAATGTCTAACTATATATGAGTTAGGAACCAACAA
66 ACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGGAACCAACAA
* * *
355697 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGAAACATGACCCACTCGCTATAGTAGAGCTAG
131 TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
* *
355762 GAACCAACGCTATAACAATATGAAATGGATGAAGCCTTCAAGACCTACAAGAAACCTATAGAGTT
196 GAACCAACGCTATAACAAGATGAAATGGATGAAGCCTTCAAGACCTACAAGAAACCGATAGAGTT
* * *
355827 CTAATCCAAGAACTAAAATGAAAGTAATAATTCAAAGAGTGTATTATGAAAAAAGTTCTTAGTAC
261 CTAATCCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTAC
*
355892 AAATACCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCCTATAAAGAGTTTTTACAATTAAA
326 AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCCTATAAAGAGTTTTTACAATTAAA
* * *
355957 ATAAAACAATCTCCTAAATACAATTTAATTCAATTAAATGACATGTCATTCTTCTAACCTTTTTG
391 ATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACC-CTTTG
356022 ATG
455 ATG
356025 TAAGGCTAAC
Statistics
Matches: 984, Mismatches: 130, Indels: 50
0.85 0.11 0.04
Matches are distributed among these distances:
674 3 0.00
675 10 0.01
676 264 0.27
677 4 0.00
678 224 0.23
679 7 0.01
681 1 0.00
682 2 0.00
683 5 0.01
685 2 0.00
687 280 0.28
688 2 0.00
689 178 0.18
690 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (669 bp):
TGTGGTGATGATAGTGGTTGATTGGATGTAAGGAAAATGGTGAAGGATGTTTGTGGTTGGCGTGG
ACAATGATAGTAATTCAAAGGATGGATTGTGACCCTCTAACTATATATGAGTTAGGAACCAACAA
TATACTAAAGATGGAATCGAAGTGATAGAGGGTGGAACGTGACCCACTAGCTATAGTAGAGCTAG
GAACCAACGCTATAACAAGATGAAATGGATGAAGCCTTCAAGACCTACAAGAAACCGATAGAGTT
CTAATCCAAGAACTAAAATGAAAGCAATATTTCAAAGAGTTTATTATGAAAAAAGTTCTTAGTAC
AAATGCCATGGAGGTGCCTATTTATAGTGTTGATAGGCACCCTATAAAGAGTTTTTACAATTAAA
ATAAAACAATCTCCTAAATGCAATTTAATTCAATTAAATGACTTGTCATTCTTCTAACCCTTTGA
TGGTTGCACATGTAGATTGAAAATGGATGAATTGGTAGACCTATGTATGAGTTTCGGATCTATAT
GAATCAAATGCTACATTTGAATTGAAGTGCTCTGACTGAAGAAGAAAATTGATAAAAAATGTATA
AGAAGGAAATATGTATATTTAAATAGAAAAAGGAAGGAATGAAAATGATAGAATAAAGTTCAAGT
GGATTGTAAATGAAAGAAG
Found at i:356395 original size:35 final size:36
Alignment explanation
Indices: 356356--356435 Score: 135
Period size: 35 Copynumber: 2.2 Consensus size: 36
356346 AAATGGAATT
**
356356 TGGTGATGATATAGGCGTGAT-ATGGTGATGGACTA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
356391 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
1 TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
356427 TGGTGATGA
1 TGGTGATGA
356436 ACATATTGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
35 21 0.50
36 21 0.50
ACGTcount: A:0.28, C:0.04, G:0.39, T:0.30
Consensus pattern (36 bp):
TGGTGATGATATAGGCGTGATAATGGTGATGGAAGA
Found at i:362241 original size:29 final size:29
Alignment explanation
Indices: 362177--362234 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
362167 CAATAGACTG
362177 AAATAAATACAACATACAAATTAGAAACC
1 AAATAAATACAACATACAAATTAGAAACC
*
362206 AAATAAATACAAGATACAAATTAGAAACC
1 AAATAAATACAACATACAAATTAGAAACC
362235 GATTAAACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.62, C:0.16, G:0.05, T:0.17
Consensus pattern (29 bp):
AAATAAATACAACATACAAATTAGAAACC
Found at i:363907 original size:2 final size:2
Alignment explanation
Indices: 363896--363935 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
363886 AAATTTATTA
363896 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
363936 ATAATTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:363992 original size:24 final size:25
Alignment explanation
Indices: 363955--364003 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
363945 TTTTAATATT
363955 TATCGGGCCAGGT-ATCGGGTCGGG
1 TATCGGGCCAGGTAATCGGGTCGGG
* *
363979 TATCGGGGCGGGTAATCGGGTCGGG
1 TATCGGGCCAGGTAATCGGGTCGGG
364004 GATTACCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.12, C:0.18, G:0.49, T:0.20
Consensus pattern (25 bp):
TATCGGGCCAGGTAATCGGGTCGGG
Found at i:363998 original size:13 final size:12
Alignment explanation
Indices: 363955--364003 Score: 62
Period size: 12 Copynumber: 4.0 Consensus size: 12
363945 TTTTAATATT
* *
363955 TATCGGGCCAGG
1 TATCGGGTCGGG
363967 TATCGGGTCGGG
1 TATCGGGTCGGG
*
363979 TATCGGGGCGGG
1 TATCGGGTCGGG
363991 TAATCGGGTCGGG
1 T-ATCGGGTCGGG
364004 GATTACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 22 0.69
13 10 0.31
ACGTcount: A:0.12, C:0.18, G:0.49, T:0.20
Consensus pattern (12 bp):
TATCGGGTCGGG
Found at i:365157 original size:9 final size:9
Alignment explanation
Indices: 365143--365168 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
365133 TCAAGTGCTA
365143 CAACAAAAG
1 CAACAAAAG
365152 CAACAAAAG
1 CAACAAAAG
365161 CAACAAAA
1 CAACAAAA
365169 AGAGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.23, G:0.08, T:0.00
Consensus pattern (9 bp):
CAACAAAAG
Found at i:365193 original size:28 final size:28
Alignment explanation
Indices: 365162--365215 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
365152 CAACAAAAGC
*
365162 AACAAAAAGAGAA-AAAAGAAAGAAGAAA
1 AACAAAAAGAAAAGAAAAGAAA-AAGAAA
365190 AACAAAAAGAAAAGAAAAGAAAAAGA
1 AACAAAAAGAAAAGAAAAGAAAAAGA
365216 CTCCTACATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.80, C:0.04, G:0.17, T:0.00
Consensus pattern (28 bp):
AACAAAAAGAAAAGAAAAGAAAAAGAAA
Found at i:365202 original size:6 final size:6
Alignment explanation
Indices: 365174--365215 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
365164 CAAAAAGAGA
*
365174 AAAAAG AAAGAAG AAAAAC AAAAAG -AAAAG -AAAAG AAAAAG A
1 AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
365216 CTCCTACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 10 0.31
6 16 0.50
7 6 0.19
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:370475 original size:688 final size:690
Alignment explanation
Indices: 369136--370829 Score: 2679
Period size: 688 Copynumber: 2.5 Consensus size: 690
369126 TTACATAACT
* *
369136 ATAGCTAGTGGGTCACGTTCCACCCTCTATAACTTCGATTCCATCTTTAATATATTGTTGGTTTC
1 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
*
369201 TAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGACCACGCCAACC
66 TAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
*
369266 ACAAACATCCTTCACCATTTTCCTTACAACCAATCAACCACTATCATCACCACACTTCTTTCATT
131 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
* * *
369331 TACAATCCACTTGAACTTTATTCTATCATTTCCATTACTTT-ATACACATATTTAAATATACATA
196 TAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATA
* * * *
369395 TTTCCC-TCTTATAACGTTGATTGTACATTTCCAGTCTTCAATCAAAGCACTGCGAATTTGTTTA
261 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGCGAAGTTGCTTA
* *
369459 CTAGAATCAACATCGGGCAATCATATATATGATCCAAAACTCATAATCGAGATCATATCATTATT
326 CTACAATCAACATCGGGCAATCATATATATGATCCAAAACTCATAATAGAGATCATATCATTATT
*
369524 AATCCATTTTCAATCTACATGGACAACCATCAAAGTGTAAGAAGAATGAGAAGTCATTTAATTGA
391 AATCCATTTTCAATCTACATGGACAACCATCAAAGGGTAAGAAGAATGAGAAGTCATTTAATTGA
* * *
369589 ATTAAATTTCATTTAGGTCATTGATTTATTTTAATTATAAAAACTCTTCATATGGTGCCTATCAA
456 ATTAAATTTCATTTAGGACATTGATTTATTATAATTATAAAAAATCTTCATATGGTGCCTATCAA
* * *
369654 CACTATAAATAGGCACCTCCATGGCATTTGTACTAAGACTTTTTTGCATAATAAACTCTCTGAAA
521 CACTATAAATAGGCACCACCATGGCATTTGTACTAAGACTTCTTTGCATAATAAACTCTCTCAAA
* * **
369719 GATTGCATTCATTGTAGTTCTTGGATTAAAACTCTATCAGTTTCTTATCGGTCTTGAATTCGTCA
586 GATTGCATTCATTGTAGTTCGTGGATTAAAACTCTATCAGTTTCTTATAGGTCTTGAAGCCGTCA
* *
369784 TCCATTTCATCTTGTTATAGCTTTGGCTCCTAGCTCTACA
651 TCCATTTCATCTTGTTATAGCGTTGGCTCATAGCTCTACA
*
369824 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGATTC
1 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
* *
369889 TAAATCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
66 TAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
* *
369954 ACAAACATCCTTCACCATTTTCCTTGCATCCAATCAAACACTATCATCACCACACTTCTTTCATT
131 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
* *
370019 TAGAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACAGATATTTAAATATACATA
196 TAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATA
* *
370084 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAATCTTTAATCAAAGCACTGCGAAGTT-CTTA
261 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGCGAAGTTGCTTA
*
370148 CTACAATC-ACGATTGGGCAATCATATATATGAT-CAGAAACTCATAATAGAGATCATATCATTA
326 CTACAATCAAC-ATCGGGCAATCATATATATGATCCA-AAACTCATAATAGAGATCATATCATTA
* * *
370211 TTCATCCATTTTCAATCTACATTGG-CAACCATCAAAGGGTTAGAAGAATG-GCAAGTCATTTGA
389 TTAATCCATTTTCAATCTACA-TGGACAACCATCAAAGGGTAAGAAGAATGAG-AAGTCATTTAA
* * * *
370274 TTGAATTAAATTTTATTTAGGAGATTGTTTTATTATAATTGTAAAAAATCTTCATATGGTGCCTA
452 TTGAATTAAATTTCATTTAGGACATTGATTTATTATAATTATAAAAAATCTTCATATGGTGCCTA
*
370339 TCAACACTATAAATAGGCACCACCAT-GCATTTGTACTAAGAAC-TCTTTGCATAATAAACTCTT
517 TCAACACTATAAATAGGCACCACCATGGCATTTGTACTAAG-ACTTCTTTGCATAATAAACTCTC
* * * * * * *
370402 TCAAAGATTTCTTTCATTTTAGTTCGTGGATTAGAACTCTATC-GATTTCTTGTATGTTTTGAAG
581 TCAAAGATTGCATTCATTGTAGTTCGTGGATTAAAACTCTATCAG-TTTCTTATAGGTCTTGAAG
* * * *
370466 CCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCATAGCTCTACT
645 CCGTCATCCATTTCATCTTGTTATAGCGTTGGCTCATAGCTCTACA
* *
370512 ATAGCTAGTGGGCCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTAGTTTC
1 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
* * *
370577 TAACTCAAATATAGTTAGAGGGTCATAATCCATCCTTTGAACTACTATCATTGTCCATGCCAACC
66 TAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
* *
370642 ACAAACGTCCTTCACCATTTTCCTTACATCCAATCTACCACTATCATCACCACACTTCTTTCATT
131 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
*
370707 TAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATTCACATATTTAAATATACATA
196 TAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATA
* *
370772 TTTCCCTTCTTATAACATTGTTTGTACATTTTTAGTCTTCAATCAAAGCACTGCGAAG
261 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGCGAAG
370830 AATGACAATT
Statistics
Matches: 924, Mismatches: 74, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
687 1 0.00
688 649 0.70
689 223 0.24
690 51 0.06
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (690 bp):
ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
TAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
TAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATA
TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGCGAAGTTGCTTA
CTACAATCAACATCGGGCAATCATATATATGATCCAAAACTCATAATAGAGATCATATCATTATT
AATCCATTTTCAATCTACATGGACAACCATCAAAGGGTAAGAAGAATGAGAAGTCATTTAATTGA
ATTAAATTTCATTTAGGACATTGATTTATTATAATTATAAAAAATCTTCATATGGTGCCTATCAA
CACTATAAATAGGCACCACCATGGCATTTGTACTAAGACTTCTTTGCATAATAAACTCTCTCAAA
GATTGCATTCATTGTAGTTCGTGGATTAAAACTCTATCAGTTTCTTATAGGTCTTGAAGCCGTCA
TCCATTTCATCTTGTTATAGCGTTGGCTCATAGCTCTACA
Found at i:371368 original size:573 final size:573
Alignment explanation
Indices: 370253--371404 Score: 1916
Period size: 574 Copynumber: 2.0 Consensus size: 573
370243 CAAAGGGTTA
* * * **
370253 GAAGAATGGCAAGTCATTTGATTGAATTAAATTTTATTTAGGAGATTGTTTTATTATAATTGTAA
1 GAAGAATGACAAGTCATTTAATAGAATTAAATTGCATTTAGGAGATTGTTTTATTATAATTGTAA
* * *
370318 AAAATCTTCATATGGTGCCTATCAACACTATAAATAGGCACCACCATGCATTTGTACTAAGAACT
66 AAAATCTTCATATAGTGCCTATCAACACTATAAATAGGCACCACCATGCAATTGTACTAAGAAAT
* * *
370383 CTTTGCATAATAAACTCTTTCAAAGATTTCTTTCATTTTAGTTCGTGGATTAGAACTCTATCGAT
131 CTTTGCATAATAAACACTTTCAAAGATTGCTTTCATTTTAGTTCGTGGATTAAAACTCTATCGAT
* * *
370448 TTCTTGTATGTTTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCATAGCTCTACTA
196 TTCTTGTAGGTCTTGAAGCCATCATCCATTTTATCTTGTTATAGCGTTGGTTCATAGCTCTACTA
370513 TAGCTAGTGGGCCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTAGTTTCT
261 TAGCTAGTGGGCCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTAGTTTCT
* * * *
370578 AACTCAAATATAGTTAGAGGGTCATAATCCATCCTTTGAACTACTATCATTGTCCATGCCAACCA
326 AACTAAAATATAGTTAGAGGGTCACAATCCATCCATTGAACTACTATCATTGTCCACGCCAACCA
* * * *
370643 CAAACGTCCTTCACCATTTTCCTTACATCCAATCTACCACTATCATCACCACACTTCTTTCATTT
391 CAAACGTCCTTCACCAATTTCCTTACATCCAATCAACCACTATCATCACCACACATATTTCATTT
*
370708 AGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATTCACATATTTAAATATACATAT
456 AGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATGCACATATTTAAATATACATAT
*
370773 TTCCCTTCTTATAACATTGTTTGTACATTTTTAGTCTTCAATCAAAGCACTGC
521 TTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGC
*
370826 GAAGAATGACAATTCATTTAATAGAATTAAATTGCATTTAGGAGATTGTTTTATTATAATTGTAA
1 GAAGAATGACAAGTCATTTAATAGAATTAAATTGCATTTAGGAGATTGTTTTATTATAATTGTAA
* *
370891 AAAATCTTCATATAGTGCCTATCTACACTATAAATAGGCACCGCCATGGCAATTGTACTAAGAAA
66 AAAATCTTCATATAGTGCCTATCAACACTATAAATAGGCACCACCAT-GCAATTGTACTAAGAAA
* *
370956 TTTTTGCATAATAAACACTTTCAAAGATTGCTTTCATTTTAGTTCGTGGATTAAAACTCTATCGG
130 TCTTTGCATAATAAACACTTTCAAAGATTGCTTTCATTTTAGTTCGTGGATTAAAACTCTATCGA
*
371021 TTTCTTGTAGGTCTTGAAGCCATCATCCATTTTATCTTGTTATAGCGTTTGTTTC-TAGCTCTAC
195 TTTCTTGTAGGTCTTGAAGCCATCATCCATTTTATCTTGTTATAGCG-TTGGTTCATAGCTCTAC
* * *
371085 TATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTTGATTCCATCTTTAGTATATTGTTGGTTT
259 TATAGCTAGTGGGCCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTAGTTT
371150 CTAACTAAAATATAGTTAGAGGGTCACAATCCATCCATTGAACTACTATCATTGTCCACGCCAAC
324 CTAACTAAAATATAGTTAGAGGGTCACAATCCATCCATTGAACTACTATCATTGTCCACGCCAAC
*
371215 CACAAACGTCCTTCA-CAATTTCCTTACATCCAAAT-AACCACTATTATCACCACACATATTTCA
389 CACAAACGTCCTTCACCAATTTCCTTACATCC-AATCAACCACTATCATCACCACACATATTTCA
*
371278 TTTAGAATCCACTTCAACTTCGTTCTATCATTTCCATTACTTTCATGCACATATTTAAATATACA
453 TTTAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATGCACATATTTAAATATACA
* *
371343 TATTTCCTTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGC
518 TATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGC
371399 G-AGAAT
1 GAAGAAT
371405 CAAGATCGGC
Statistics
Matches: 539, Mismatches: 37, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
572 5 0.01
573 259 0.48
574 269 0.50
575 6 0.01
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.38
Consensus pattern (573 bp):
GAAGAATGACAAGTCATTTAATAGAATTAAATTGCATTTAGGAGATTGTTTTATTATAATTGTAA
AAAATCTTCATATAGTGCCTATCAACACTATAAATAGGCACCACCATGCAATTGTACTAAGAAAT
CTTTGCATAATAAACACTTTCAAAGATTGCTTTCATTTTAGTTCGTGGATTAAAACTCTATCGAT
TTCTTGTAGGTCTTGAAGCCATCATCCATTTTATCTTGTTATAGCGTTGGTTCATAGCTCTACTA
TAGCTAGTGGGCCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTAGTTTCT
AACTAAAATATAGTTAGAGGGTCACAATCCATCCATTGAACTACTATCATTGTCCACGCCAACCA
CAAACGTCCTTCACCAATTTCCTTACATCCAATCAACCACTATCATCACCACACATATTTCATTT
AGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATGCACATATTTAAATATACATAT
TTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGC
Found at i:372332 original size:689 final size:687
Alignment explanation
Indices: 370826--376916 Score: 9005
Period size: 689 Copynumber: 8.9 Consensus size: 687
370816 AAAGCACTGC
* * * *
370826 GAAGAATGACAATTCATTTAATAGAATTAAATTGCATTTAGGAGATTGTTTTATTATAATTGTAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * * * * * * *
370891 AAAATCTTCATATAGTGCCTATCTACACTATAAATAGGCACCGCCATGGCAATTGTACTAAGAAA
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
* * * * *
370956 TTTTTGCATAATAAACACTTTCAAAGATTGCTTTCATTTTAGTTCGTGGATTAAAACTCTATCGG
131 TTTTT-CATAATAAACTCTTTGAAA-ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
* * ** * * *
371021 TTTCTTGTAGGTCTTGAAGCCATCATCCATTTTATCTTGTTATAGCGTTTGTTTCTAGCTCTACT
194 TTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
* *
371086 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTTGATTCCATCTTTAGTATATTGTTGGTTTC
259 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
* * * *
371151 TAACTAAAATATAGTTAGAGGGTCACAATCCATCCATTGAACTACTATCATTGTCCACGCCAACC
324 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
* * * * *
371216 ACAAACGTCCTTCA-CAATTTCCTTACATCCAAAT-AACCACTATTATCACCACACATATTTCAT
389 ACAAACATCCTTCACCATTTTCCTTACATCC-AATCAACCACTATCATCACCACACTTCTTTCAT
* * *
371279 TTAGAATCCACTTCAACTTCGTTCTATCATTTCCATTACTTTCATGCACATATTTAAATATACAT
453 TTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
*
371344 ATTTCCTTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCAC--T---G------
518 ATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTTCTTA
* * * *
371398 CGAGAATCAAGA-TCGGCAAATCATATATATGATCTGAAACTCATAACCGAGATCATACCATTAT
583 CTAGAATCAAGATTGGGC-AATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTAT
* *
371462 TCATCCATTTTCAATCTACATGGGCAACCATTAAAGGATAA
647 TCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
* * * *
371503 GAAGAATGACAAGTC-TTTGAATTCAATTAAATGGAATTTAGGTGATTATTTTATTTTAATTGTA
1 GAAGAATGACAAGTCATTT-AATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTA
* *
371567 AAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCGCGACATTTGTACTAAGAA
65 AAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAG-A
* *
371632 ATTTTTTCATAATAAACTCTTTGAAAATTTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCA
129 ACTTTTTCATAATAAACTCTTTGAAAA-TTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCG
* * *
371697 ATTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATATCGTTGATTCCTAGCTCTAC
193 GTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTAC
*
371762 TATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCTATCTTTAGTATATTGTTGGTTT
258 TATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTT
*
371827 CTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCGAC
323 CTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAAC
*
371892 CACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCTCACTTCTTTCAT
388 CACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCAT
* *
371957 TTACAATCCACTTCAGCTTGATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
453 TTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
* * *
372022 ATTTCCCTTCTTATAATGTTGTTTGTACATTTTCATTCTTAAATCAAAGCACTGTGAAGTTCTTA
518 ATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTTCTTA
*
372087 CTAGAATCAAGATTGGGCAATCATATACATGATCTGAAACTCATAATCGAGATCATATCATTATT
583 CTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATT
*
372152 CATCCATTTTCATTCTACATGGGCAACCATCAAAGGGTAA
648 CATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
* * *
372192 GAAGAATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTAATTGTGTTATTTTAATTGTAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
372257 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
* * *
372322 TTCATTCATAATAAACTCTTTAAAAGATTGCATTCATTTTAGTTCTTGGATTAGAATTCTATCGG
131 TT-TTTCATAATAAACTCTTTGAAA-ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
* *
372387 TTTCCTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTATCTCTACT
194 TTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
* *
372452 ATAGCCAGTGGGTTACGATCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
259 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
* ** *
372517 TAACTCATATATAGTTAGAGGGTAACAATCCATCCTTTGAAAAACTATCATTGTCCACGCCGACC
324 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
*
372582 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAA-CAGCAATCATCACCACACTTCTTTCAT
389 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA-CTATCATCACCACACTTCTTTCAT
* *
372646 TTACAATCCACTTTAACTTAATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
453 TTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
* * * *
372711 ATTTCCCTTCGTATAATGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTA
518 ATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTTCTTA
* *
372776 CTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCTTATCATTATT
583 CTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATT
*
372841 CATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTA
648 CATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
* * *
372881 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCTTTTAGCTGATTGTTTTATTTTAATGGTAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * * * * * * *
372946 AAACACTTCATTTGTTGCCTATAAACACTATAAATAGGAACCTGCACGACATTTGTTCTAATAAC
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
* *
373011 TTTTTTGATAAAAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
131 -TTTTTCATAATAAACTCTTTGAAA-ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
* * * *
373076 TTTCATT-TCGATCTTAAAGCTTTCAGCCATTTCATCTTATTATAGAGTTGGTTCCTAGCTCTAC
194 TTTC-TTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTAC
* * * * *
373140 TATAGCTAGTGTGTTACGTTCCACCCTCTATCACATCGATTCCTTCTTTAGTATATTTTTGGTTC
258 TATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTT
* * *
373205 CAAACTAATATATAGTTAGAGGGTCACAATCCATCCTTTGAA-TACTATCATTCTCCACGCCAAC
323 CTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAAC
* * * *
373269 CACAAACGTCCTTCA-CAATTTCCTTACATCCAATCAACCACTATCATTACCACACTACTTTCAT
388 CACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCAT
*
373333 TTAGAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACAC--ATTTAAATATACAT
453 TTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
* * * *
373396 ATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGACTTCAATCAAAGCACTTTGAATTTTCTT
518 ATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAA-GTTCTT
* *
373461 ACTATAATCAAGATCGGGCAATCATATATATGATAC--AAACTCATAATCGAGATCATATCATTA
582 ACTAGAATCAAGATTGGGCAATCATATATATGAT-CTGAAACTCATAATCGAGATCATATCATTA
* **
373524 TTCATCCATTTTCAAGCTACATGGGCAACCATCAAACTGTAA
646 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
* * * ** *
373566 GAATAATGACAAGTCATTTAATTGATTTAAATTGCA-TTAAGTGATCATTTTATTTTAATTGCAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * *
373630 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCACCATTG-CGTTTGTACTAAGAA
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA-CGACATTTGTACTAAGAA
* * *
373694 CTTTTTGCATAATAAACTCTCTGAATGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCG
130 CTTTTT-CATAATAAACTCTTTGAA-AATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCG
* **
373759 GTTTCTTGTAGGGCTTGAAGGC-TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTA
193 GTTTCTTGTCGATCTTGAA-GCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTA
* *
373823 CTATAGCTAGTGGGTCACGTTCCACCCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGTT
257 CTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTT
* * *** * *
373888 CCTAACTCAAATATAGTTAGACATTCACAATCCATCCTTTGAATTACTATCATTCTCCATGCCAA
322 TCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAA
* * * * *
373953 CCACAAACATCCTTCACCATTTTCATTACGTTCATTCAACCACTATCATCAGCACACTTCTTTCA
387 CCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCA
* * * * *
374018 TTTACAATCCACGTCAACTTTATTCTATCATTTTCATTACTTTCACAGACATATTTAAATATACA
452 TTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACA
* * *
374083 TATTTCCTTTCTTATAACATTGTTTGTACAATTTCAGTCTTCAATCAAAGCAC--T---G-----
517 TATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTTCTT
* * * *
374138 -CGAGAATCAAGA-TCGGCAAATCATATATATGATCTGAAACTCATAACCGAGATCATACCATTA
582 ACTAGAATCAAGATTGGGC-AATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
* * *
374201 TTCATCCAATTTCAATCTACATGGGCAACCATTAAAGGGTGA
646 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
* * * * * *
374243 GAAGAATGACAAGTCATTGAAATCAATTAAATAGAATTTAGGTGATTATTTTATTTTAATTGTAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
*
374308 AAACTCTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
*
374373 TTTTTTCATAATAAACTCTTTGAAAAATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGA
131 -TTTTTCATAATAAACTCTTTG-AAAATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
*
374438 TTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATATCGTTGGTTCCTAGCTCTACT
194 TTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
374503 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
259 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
* *
374568 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACACCGACC
324 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
* *
374633 ACACACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATTATCACCACACTTCTTTCATT
389 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
* * * *
374698 TACAATCCATTTCAACTTGATTCTATAATTTCCATTACTTTCATACACATATTTAAATCTACATA
454 TACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATA
* * *
374763 TTTCCCTTCTTATAATGTTGTTTGTACATTTTCATTCTTAAATCAAAGCACTGTGAAGTTCTTAC
519 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTTCTTAC
* *
374828 TAGAATCAAGATTGGGCAATCATATACATGATCTGAAACTCATAATTGAGATCATATCATTATTC
584 TAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTC
*
374893 ATCCATTTTCAATCTACATGTGCAACCATCAAAGGGTAA
649 ATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
*
374932 GAAGAATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
*
374997 AAACTCTTCATATGGTGCCTATCAACACTAGAAATAGGCACCTCCACGACATTTGTACTAAGAAC
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
* * * * *
375062 TTCATTCATAATAAACTATTTAAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATTGA
131 TT-TTTCATAATAAACTCTTTGAAA-ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
*
375127 TTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATATCGTTGGTTCCTAGCTCTACT
194 TTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
*
375192 ATAGCTAGTGGGCTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
259 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
*
375257 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCGACC
324 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACC
*
375322 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTTTTTCATT
389 ACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATT
*
375387 TACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATA
454 TACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATA
*
375452 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAATTTTCTTA
519 TTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAA-GTTCTTA
* ** *
375517 CTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTCATAATCTAGATCATATCATTATT
583 CTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATT
* *
375582 AATCCATTTTCAATCTACATGGGCAACCATCAAAGTGTAA
648 CATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
* * * *
375622 GAAGAATGACAAATCATTTAATTGAATTAAATTTCACATT-GGTCATTGTTTTATTTTAATTGTA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCA-TTTAGGTGATTGTTTTATTTTAATTGTA
* * * * *
375686 AAAACTCATT-ATATGGTTCCCATCAACACTATAAATAGACACCTCCATGTCATTTGTACTAAGA
65 AAAACTC-TTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGA
** * *
375750 ACTTTTTGCATAATAAACTCTCAGAAAGATTGCTTTCATTTTAATTCTTGGATTAGAACTCTATC
129 ACTTTTT-CATAATAAACTCTTTGAAA-ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATC
* *
375815 GATTTCTTGTCGGTCTTGAA--TTCGTCATCCATTTCATCTTGTTATAG-GTTTGGTTCCTAGCT
192 GGTTTCTTGTCGATCTTGAAGCTT--TCATCCATTTCATCTTGTTATAGCG-TTGGTTCCTAGCT
*
375877 CTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTG
254 CTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTG
* * * *
375942 GTTTCTAACTCATATATACTTAGAGGGTCACAATACATCCTATGAATTTCTATCATTGTCCACGC
319 GTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGC
* *
376007 CAACCACAAACATCCTTCAACATTTTACTTACATCCAATCAACCACTATCATCACCACACTTCTT
384 CAACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTT
* * * * *
376072 TCATTTACAATTCACTTCAACTTCATTATATCGTTTCCATTACTTTTATATACATATTTAAATAT
449 TCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATAT
* ** * *
376137 ACATATTTCTCTTCTTATAATTTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT
514 ACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTT
* *
376202 CTTACTAAAATCAAGATTGGGTAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
579 CTTACTAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCAT
* * * * * *
376267 TATTAATCCATTTTAAATCTAAATGGGAAACTATCAAAGGGTTA
644 TATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
**
376311 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGAAGATTGTTTTATTTTAATTGTAA
1 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * **
376376 AAACTATTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA-TAGCATTTGTACTTGGAA
66 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGA-CATTTGTACTAAGAA
*
376440 CTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCG
130 CTTTTT-CATAATAAACTCTTTGAAA-ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCG
* * * *
376505 GTTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGTGTTGGTTCCTAGCTCTAC
193 GTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTAC
* * * *
376570 TATAGCTAGTTGGTTACGTTCCACCCTCTATAACTTTGATTCCATCTTTAGTATATTGATGGTTT
258 TATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTT
* * *
376635 CTAACTCAAATATAGTTAGAGGGTCACAATCCATCCTTTGATTTACTATCATTGTCCACACCAAC
323 CTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAAC
* * * * *
376700 CATAAACATCCTACACCATTTTCCTTACGTCCAATCAACCACTATCATTAGCACACTTCTTTCAT
388 CACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCAT
*
376765 TTACAATCCACTTCAACTTCATTCTACCATTTCCATTACTTTCATACACATATTTAAATATACAT
453 TTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACAT
* *
376830 ATTTCCC-TCTTATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGCACTGTGAATTTTCTT
518 ATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAA-GTTCTT
*
376894 ACTAGAATCAAGATCGGGCAATC
582 ACTAGAATCAAGATTGGGCAATC
376917 CATTTTTAAT
Statistics
Matches: 4900, Mismatches: 443, Indels: 130
0.90 0.08 0.02
Matches are distributed among these distances:
675 4 0.00
676 29 0.01
677 443 0.09
678 628 0.13
679 7 0.00
680 2 0.00
683 9 0.00
684 275 0.06
685 200 0.04
686 123 0.03
687 89 0.02
688 160 0.03
689 2287 0.47
690 639 0.13
691 5 0.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (687 bp):
GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
TTTTTCATAATAAACTCTTTGAAAATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTT
TCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTAT
AGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTA
CAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATT
TCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACTGTGAAGTTCTTACTA
GAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCAT
CCATTTTCAATCTACATGGGCAACCATCAAAGGGTAA
Found at i:378056 original size:678 final size:681
Alignment explanation
Indices: 376914--378509 Score: 2236
Period size: 678 Copynumber: 2.3 Consensus size: 681
376904 AGATCGGGCA
* * * * * *
376914 ATCCATTTTTAATCTACATGGACACCCATCAAAGTGTAAGAAGAATGACAATTCATTTAATTGAA
1 ATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTTAATTGAA
* * * *
376979 TTAAATTTCATTTAGGTCATTGATTTATTTTAATTGTAAAATCTCTTCATATGGTGCCTATCAAC
66 TTAAATTACATTTAAGTGATTG-TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAAC
* * * *
377044 ACTATAAATAGGCACCTCCATGTCATTTGTACTAAGACCTTTTTGCATAATAAACTCTCTGAAAG
130 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT-CATAATAAACTCTTTGAAAG
* * **
377109 ATTGCATTAATTTTAGTT-ATTGGAATAAAACTCTATAGGTTTCTTGTCGGTCTGGAATTCGTCA
194 ATTGCATTCATTTTAGTTCA-TGGATTAAAACTCTATAGGTTTCTTGTCGAACTGGAATTC-TCA
* *
377173 TCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCC
257 TCCATTTCAACTTGTTATAGCGTTGGTTCCTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCC
*
377238 TCTATCACTTCAATTCCATCTTTAGTATATTGATGGTATCTAACTCATATATAGTTAGAGGGTTA
322 TCTATCACTTCAATTCCATCTTTAGTATATTGATGGTATCTAACTCATATATAGTTAGAGGGTCA
* * *
377303 CAATCCATCCTTTGAATTATTATCATTGTCCATGCCAACCACAAACATCCTTCACCATTATCGTT
387 CAATCCATCCTTTGAATAACTATCATTGTCCATGCCAACCACAAACATCCTTCACCATTATCCTT
* *
377368 ACATCCAATCAACCACT-ATTATCACCACACTTCTTTCATTTACAATCCACGTCAACTTTATTCT
452 ACATCCAATCAACCA-TAATCATCACCACACTTCTTTCATTTACAATCCACGTCAACTTGATTCT
*
377432 ATCATTTTC-ATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACT-TTGTT
516 ATCA-TTTCAATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAA-TGTTGTT
* * **
377495 TGTACATTTTCAGCCTTCAATC-AG-AC-C-A-C-TGCGT-GAATCAAGATC-TTCAAATCATAT
579 TGTACATTTTCAGCCTTAAATCAAGCACACAATCTTAC-TAGAATCAAGATCGGGC-AATCATAT
377552 ATATGATCCGAAACTCATAACCGAGATCATA-CAAATATTC
642 ATATGATCCGAAACTCATAACCGAGATCATATC-AATATTC
*
377592 ATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAA
1 ATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTTAATTGAA
*
377657 TTAAATTACATTTAAGTGATTGTGTTATTTTAATTGCAAAAACTCTTCATATGGTGCCTATCAAC
66 TTAAATTACATTTAAGTGATTGT-TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAAC
* * * *
377722 ACTATAAATAGGCACCTCCACGACATTAGTTCTAAGAACTTCATTCATAATAAACTCTTTAAAAG
130 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTT-TTTCATAATAAACTCTTTGAAAG
* * * * *
377787 ATTCCATTCATTTTAGTTCATGGATTATAACTCTATCGGTTTCTTGTTGAACTTGAAGCTT-TCA
194 ATTGCATTCATTTTAGTTCATGGATTAAAACTCTATAGGTTTCTTGTCGAACTGGAA--TTCTCA
* *
377851 TCCATTTCAACTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCC
257 TCCATTTCAACTTGTTATAGCGTTGGTTCCTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCC
* * *
377916 TCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCA
322 TCTATCACTTCAATTCCATCTTTAGTATATTGATGGTATCTAACTCATATATAGTTAGAGGGTCA
* * * *
377981 CAATCCATCCTTTGAATAACTATCATTGTCCACT-CCAATCACAACCATCCTTTACCATTTTCCT
387 CAATCCATCCTTTGAATAACTATCATTGTCCA-TGCCAACCACAAACATCCTTCACCATTATCCT
*
378045 TACATCCAATCAACCATAATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTGATTCT
451 TACATCCAATCAACCATAATCATCACCACACTTCTTTCATTTACAATCCACGTCAACTTGATTCT
*
378110 ATCATTTCAATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTCTAATGTTGTTTG
516 ATCATTTCAATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAATGTTGTTTG
*
378175 TACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAAGATCGGGCAATCATA
581 TACATTTTCAGCCTTAAATC-AAGCAC-AC-AA--TCTTACTAGAATCAAGATCGGGCAATCATA
* * *
378240 TATATGATCTGAAACTCATAATCGAGATCATATCATTATTC
641 TATATGATCCGAAACTCATAACCGAGATCATATCAATATTC
* *
378281 ATCCATTTTCAATCTACATGAGCAACCATCT-AAGGGTTAGAAGAATGACAAGTCATTTAATTGA
1 ATCCATTTTCAATCTACATGGGCAACCAT-TAAAGGGTAAGAAGAATGACAAGTCATTTAATTGA
* * * * * *
378345 ATTAAATTGCATTT-AGCTGATTGTTTTATTTTAATGGTAAAAACACTTCATTTGTTGCCTATAA
65 ATTAAATTACATTTAAG-TGATTG-TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCA
* *
378409 ACACTATAAATAGGAACCTGCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAA
128 ACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC-TTTTTCATAATAAACTCTTTGAA
* *
378474 AGATTGCATTCATTTTAGTTCTTGGATTAGAACTCT
192 AGATTGCATTCATTTTAGTTCATGGATTAAAACTCT
378510 TTGAGACACT
Statistics
Matches: 815, Mismatches: 76, Indels: 43
0.87 0.08 0.05
Matches are distributed among these distances:
677 7 0.01
678 530 0.65
679 4 0.00
680 4 0.00
681 2 0.00
683 1 0.00
685 1 0.00
688 4 0.00
689 256 0.31
690 6 0.01
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (681 bp):
ATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTTAATTGAA
TTAAATTACATTTAAGTGATTGTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACA
CTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTCATAATAAACTCTTTGAAAGAT
TGCATTCATTTTAGTTCATGGATTAAAACTCTATAGGTTTCTTGTCGAACTGGAATTCTCATCCA
TTTCAACTTGTTATAGCGTTGGTTCCTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCCTCTA
TCACTTCAATTCCATCTTTAGTATATTGATGGTATCTAACTCATATATAGTTAGAGGGTCACAAT
CCATCCTTTGAATAACTATCATTGTCCATGCCAACCACAAACATCCTTCACCATTATCCTTACAT
CCAATCAACCATAATCATCACCACACTTCTTTCATTTACAATCCACGTCAACTTGATTCTATCAT
TTCAATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAATGTTGTTTGTACAT
TTTCAGCCTTAAATCAAGCACACAATCTTACTAGAATCAAGATCGGGCAATCATATATATGATCC
GAAACTCATAACCGAGATCATATCAATATTC
Found at i:379091 original size:629 final size:629
Alignment explanation
Indices: 377888--379134 Score: 1930
Period size: 629 Copynumber: 2.0 Consensus size: 629
377878 TCCTAGCTCT
*
377888 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGT
* * * * *
377953 TTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATAACTATCATTGTCCACTCCA
66 TCCAAACTAATATATAGTTAGAGGGTCACAATCCATCCTTTGAATAACTATCATTCTCCACGCCA
* * * *
378018 ATCACAACCATCCTTTACCATTTTCCTTACATCCAATCAACCATAATCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCATAACCATCACCACACTTCTTTC
*
378083 ATTTACAATCCACTTCAACTTGATTCTATCATTTCAATTACTTTCATACAAATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCAATTACTTTCATACAAATATTTAAATATAC
* * *
378148 ATATTTCCCTTCTTCTAATGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCT
261 ATATTTCCCTTCTTATAATGTTGTTTGTACAGTTTCAGTCTTAAATCAAAGAACTACGAAGTTCT
**
378213 TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
326 TACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTCATAATCGAGATCATATCATTA
* *
378278 TTCATCCATTTTCAATCTACATGAGCAACCATCTAAGGGTTAGAAGAATGACAAGTCATTTAATT
391 TTAATCCATTTTCAATCTACATGAGCAACCATCTAAGGGTAAGAAGAATGACAAGTCATTTAATT
** * * * *
378343 GAATTAAATTGCATTTAGCTGATTGTTTTATTTTAATGGTAAAAACACTTCATTTGTTGCCTATA
456 GAATTAAATTGCACATAGCTCATTGTTTTATTTTAATGGTAAAAACACATCATTGGTTGCCCATA
* * *
378408 AACACTATAAATAGGAACCTGCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGA
521 AACACTATAAATAGGAACCTCCACGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTGA
*
378473 AAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTTTGAGAC
586 AAGATTGCATTCATTTTAATTCTTGGATTAGAACTCTTTGAGAC
*
378517 ACTATAGCTAGTGTGTTACGTTCCACCCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGT
* *
378582 TCCAAACTAATATATAGTTAGAGGGTCACAATCCATCCTTTGGAT-ACTATTATTCTCCACGCCA
66 TCCAAACTAATATATAGTTAGAGGGTCACAATCCATCCTTTGAATAACTATCATTCTCCACGCCA
* *
378646 ACCATAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACT-ACCATCACCACACTTCTTT
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCA-TAACCATCACCACACTTCTTT
* *
378710 CATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATA
195 CATTTACAATCCACTTCAACTTCATTCTATCATTTCAATTACTTTCATACAAATATTTAAATATA
* ** *
378775 CATATTTCCCTTCTTATAACT-TTGTTTGTACAGTTTCAGTCTTCAATCAAAGAACTGTGAATTT
260 CATATTTCCCTTCTTATAA-TGTTGTTTGTACAGTTTCAGTCTTAAATCAAAGAACTACGAA-GT
*
378839 TCTTACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTCATAATCTAGATCATATCA
323 TCTTACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTCATAATCGAGATCATATCA
* * *
378904 TTATTAATCCATTTTCAATCTACATGGGCAACCAT-TAAAGTGTAAGAAGAATGACAATTCATTT
388 TTATTAATCCATTTTCAATCTACATGAGCAACCATCT-AAGGGTAAGAAGAATGACAAGTCATTT
* * * * *
378968 AATTGAATTAAATTTCACATAGGTCATTGTTTTATTTTAATTGTAAACACTCATCATATGGTT-C
452 AATTGAATTAAATTGCACATAGCTCATTGTTTTATTTTAATGGTAAAAACACATCAT-TGGTTGC
* * *
379032 CCATCAACACTATAAATA-GACACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAAACT
516 CCATAAACACTATAAATAGGA-ACCTCCACGACATTTGTACTAAGAACTTTTTGCATAATAAACT
*
379096 CTCTGAAAGATTGCTTTCATTTTAATTCTTGGATTAGAA
580 CTCTGAAAGATTGCATTCATTTTAATTCTTGGATTAGAA
379135 ATCTATCGGT
Statistics
Matches: 560, Mismatches: 52, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
628 190 0.34
629 366 0.65
630 4 0.01
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (629 bp):
ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGT
TCCAAACTAATATATAGTTAGAGGGTCACAATCCATCCTTTGAATAACTATCATTCTCCACGCCA
ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCATAACCATCACCACACTTCTTTC
ATTTACAATCCACTTCAACTTCATTCTATCATTTCAATTACTTTCATACAAATATTTAAATATAC
ATATTTCCCTTCTTATAATGTTGTTTGTACAGTTTCAGTCTTAAATCAAAGAACTACGAAGTTCT
TACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTCATAATCGAGATCATATCATTA
TTAATCCATTTTCAATCTACATGAGCAACCATCTAAGGGTAAGAAGAATGACAAGTCATTTAATT
GAATTAAATTGCACATAGCTCATTGTTTTATTTTAATGGTAAAAACACATCATTGGTTGCCCATA
AACACTATAAATAGGAACCTCCACGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTGA
AAGATTGCATTCATTTTAATTCTTGGATTAGAACTCTTTGAGAC
Found at i:380326 original size:689 final size:688
Alignment explanation
Indices: 378517--385359 Score: 9731
Period size: 689 Copynumber: 10.0 Consensus size: 688
378507 TCTTTGAGAC
* *
378517 ACTATAGCTAGTGTGTTACGTTCCACCCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * * *
378582 TCCAAACTAATATATAGTTAGAGGGTCACAATCCATCCTTTGGA-TACTATTATTCTCCACGCCA
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
* * *
378646 ACCATAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTACCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
378711 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
* * * * * *
378776 ATATTTCCCTTCTTATAACTTTGTTTGTACAGTTTCAGTCTTCAATCAAAGAACTGTGAATTTTC
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTC
** *
378841 TTACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTCATAATCTAGATCATATCATT
325 TTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATT
* * * *
378906 ATTAATCCATTTTCAATCTACATGGGCAACCATTAAAGTGTAAGAAGAATGACAATTCATTTAAT
390 ATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAAT
* ** * * * * *
378971 TGAATTAAATTTCACATAGGTCATTGTTTTATTTTAATTGTAAACACTCATCATATGGTTCCCAT
455 TGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTAT
* * * *
379036 CAACACTATAAATAGACACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTG
520 CAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT-CATAATAAACTCTTTG
* * * * * *
379101 AAAGATTGCTTTCATTTTAATTCTTGGATTAGAAATCTATCGGTTTCTTGTCGGTCTTGAATTCA
584 AAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAA-GCT
* *
379166 TT-ATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGTTCT
648 TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
* * * * * *
379206 ACAATAACTAG-GGAGTCACGTTCCACACTCTATCACTTTGATTCAATCTTTAGTATATTGTTGG
1 ACTATAGCTAGTGG-GTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGG
* * * *
379270 TTTCTAACTCATTTATAGTTAGAGGG------TCCATCCTTTGAATTACTATCATTGTCTACGCC
65 TTCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCC
* * * *
379329 AACCACAAACATCCTTCATCATTTTTCTTACATCCAATCAACCACTATCATCACCATACTTCCTT
130 AACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTT
* * * *
379394 CATTTACAATCCACTTCAGCTACATTCTATCATTTCCATTTCTTTCATAAACATATTTAAATATA
195 CATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATA
* * *
379459 CATATTTCCCTTCTTATAAAGTTGTTTGTACATTTTCAGTCTTAAATCAAAGAACTGTGAAGTTC
260 CATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTC
* * * *
379524 TTAATAGAATCATGATTGGGCAATCATATATATGATCTGAAACTCATAATCAAGATCATATCATT
325 TTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATT
* * * * *
379589 ATTCATCCATTTTCAATCTTCATGGGCATCAATCAAATGGTTAGAAGAATGACAAGTCATTTAAT
390 ATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAAT
** *
379654 TGAATTAAATTATATTTAGGAGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTAT
455 TGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTAT
* *
379719 CAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTCATTCATAATAAACTCTTTA
520 CAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTT-TTTCATAATAAACTCTTTG
379784 AAAGATTGCATTCATTTTAGTTCTTGGATTAGAAAC-CTATCGGTTTCTTGTCGATCTTGAAGCT
584 AAAGATTGCATTCATTTTAGTTCTTGGATTAG-AACTCTATCGGTTTCTTGTCGATCTTGAAGCT
*
379848 TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTAT
648 TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
*
379889 ACTATATCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * * * * * *
379954 TTCTAACTCATATATAGTTAGAGAGTCATAATCCATCATTTGAATAACTATCATTGTCCACGCCG
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
* *
380019 ACCACAAACATCCTTCACCATTTTCCTTACATCTAATCAACCACAATCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
* *
380084 ATTTACAATCCTCTTCAACTTGATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
*
380149 ATATTTCCCTTCTTATAATGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
* *
380214 TACTAGAATCAAGATCGGGCAATCATATATAAGATCTGAAACTCATAATCGATATCATATCATTA
326 TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
* *
380279 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGACAAGACATTTAATT
391 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATT
* * * *
380344 GAATTAAAATGCATTTAGCTGATTGTTTTATTTTAATGGTAAAAACACTTCATA-GGTTGCCTAT
456 GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGG-TGCCTAT
* * * *
380408 AAACACTATAAATAGGAACATGCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTG
520 CAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC-TTTTTCATAATAAACTCTTTG
* *
380473 AAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTCATT-TCGATCTTAAAGCT
584 AAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC-TTGTCGATCTTGAAGCT
* * *
380537 TTCATCCATTTCAACTTATTATAGAGTTGGTTCCTAGCTCT
648 TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
* * * *
380578 ACTATAGCTAGTGTGTTACGTTCCACCCTCTATCACATCAATTACATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * * *
380643 TCCAAACTAATATATAGTTATAGGGTCATAATCCATCCTTTGAA-TACTATCATTCTCCACGCCA
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
* * * *
380707 ACCACAAACATCCTTCACTATTTTCATTACATCCAATCAATCACTACCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
* *
380772 ATTTACAATCCACTTCAAATTCATTCTATCATTTCCATTACTTTCGTACACATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
* * * *
380837 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTATTTAATCAAAGCACTGTGAATTTTC
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTC
** *
380902 TTACTAGAATCAAGATCGGGCAATCATATATATGATCCAAAACTTATAATCGAGATCATATCATT
325 TTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATT
* * *
380967 ATTAATCCATTTTCAATCTACATGGGCAACCATCAAAGTGTAAGAAGAATGACAAGTCATTCAAT
390 ATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAAT
* ** * * *
381032 TGAATTAAATTTCACATAGGTCATTGTTTTATTTTAATTGTAAAAACTCATCATATGGTTCCTAT
455 TGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTAT
* * * *
381097 CAACACTATAAATAGACACCTCCATGACATTTGTACTAAGAACTTTTTGCATTATAAACTCTCTG
520 CAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT-CATAATAAACTCTTTG
* * * *
381162 AAAGATTGCTTTCATTTTAATTCTTGGATTAGAAATCTATCGGTTTCTTGTCGGTCTTGAA--TT
584 AAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTT
* *
381225 CACCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCT
649 --TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
* * * * * * *
381267 ACAATAACTAGTGAGTCACGTTCCACACTCTATCACTTCGATTCCGTCTTTATTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * *
381332 TTCTATCTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCA
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
*
381397 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCATACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
* * * *
381462 ATTTATAATCCACTTCAACTACATTCTATCGTTTCCATTACTTTCATAAACATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
*
381527 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAACACTGCGAAGTTCT
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
* * * *
381592 TAATAGAATCAAGAACGGGCAATAATATATATGATGTGAAACTCATAATCGAGATCATATCATTA
326 TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
* * * * *
381657 TTCATCCATTTTCAATCTTCATGGGCATCCATCAAATGGTTAGAAGAATGAAAAGTCATTTAATT
391 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATT
* * * *
381722 GAATTAAATTGTAATTAGGAGAATGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
456 GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
* * *
381787 AACACTATAAATATGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGA
521 AACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT-CATAATAAACTCTTTGA
** * * *
381852 ATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATC-GTTCTCTTGTAGGTCTTGAAGGC-
585 AAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTT-TCTTGTCGATCTTGAA-GCT
381915 TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
648 TTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
*
381956 ACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
*** * * *
382021 TCCTAACTCATATATAGTTAGACATTCACAATCCATCATTTGAATTACTATCATTCTCTACACCA
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
* ** * *
382086 ACCACAAACATCATTCACCATTTTTGTTACATCCAATCAACCACTATCATCAGCACACTTCATTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
* * * *
382151 ATTTACAATCCACGTCAAATTTATTCTATCATTTTCATTACTTTCATACACATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
* * *
382216 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCATTCTTCAATCAGAGCA---C--AG----
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
* * * * * *
382272 --CGAGAATCAAGAT-TGACAAATCATATATATGATCTGAAATTCATAACCGAGATCATA-CAAA
326 TACTAGAATCAAGATCGGGC-AATCATATATATGATCTGAAACTCATAATCGAGATCATATC-AT
* * * *
382333 TATTTATCCATTTT-ATATCTACATGGGAAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGA
389 TATTCATCCATTTTCA-ATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTA
* * * *
382397 ATTGAATTAAATTGCATTTGGGTGATTATTTTATTTTAATTGTAAAAACTCTCCATGTGGTGCCT
453 ATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCT
* ** * * * *
382462 ATCAACACTATACATA-AAACCTCCATGACATTTTTAGTAAGAATTTTTTTCATAATAAACT-TC
518 ATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAA-CTTTTTCATAATAAACTCT-
* * * *
382525 TTGAAAAATTGCATTCATTTTAGTTCTTGGAATAGAATTCTATTGGTTTCTTGTCGATCTTGAAG
581 TTGAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAG
*
382590 CTTTCATCCATTTCATCTTGTTATAGCATTGGTTCCTAGCTCT
646 CTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
**
382633 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATGATTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * * * *
382698 TCCTAACTCATATATAGTTATAAGGTCACAATCCATCCATTGAA-TACTATCATTCTCCATGCAA
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
*
382762 ACCACAAACATCCTTCACCATTTTCATTACATCCAATCAACCACTATCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
* ** * * * *
382827 TTTTACAATAAACTTCAACTTCATTCTATCATTTCCATTACCTACATATAGATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
* * *
382892 ATATTACCCTTCTTATAATGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGTGAAGTTCT
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
* ** * * * *
382957 TAATAGAATCAATTTCGGACAATCTTATATATGATCTGAAGCTCATAATCGAGATCATAACATTA
326 TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
* * * *
383022 TTCATCCATTTTCAATCTTCATGGGAAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATT
391 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATT
* *
383087 GAATTAAATTGTATTTAGGAGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
456 GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
** *
383152 AACACTATAAATAGGTGCCTCCATTG-CATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTG
521 AACACTATAAATAGGCACCTCCA-CGACATTTGTACTAAGAACTTTTT-CATAATAAACTCTTTG
** * * * **
383216 AATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGGAT
584 AAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTT
*
383281 TCGTCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
649 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
* * *
383321 ACTATAGCTAGTGGGTCACGTTCCAACCTCTATCACATCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* *** *
383386 TCCTAACACATATATA-TCTAGACATTCACTATCCATCCTTTGAATTACTATCATTCTCCACGCC
66 TCCTAACTCATATATAGT-TAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCC
* * * * * *
383450 AACCACAAATAACCTTCACCATTTTCGTTACATCCAATTAACCAATATTATCACCACACTTCTTT
130 AACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTT
* * *
383515 CATTTACAATCCACGTCAACTTTATTCTATCATTTTCATTACTTTCATACACATATTTAAATATA
195 CATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATA
* *
383580 CATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAGAGCACTGC---G---
260 CATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTC
* * *
383639 -----AGAATCAAGATC-GGCAAATTATATATATGATCCGAAACTCATAACCGAGATCATA-CAA
325 TTACTAGAATCAAGATCGGGC-AATCATATATATGATCTGAAACTCATAATCGAGATCATATC-A
* * * *
383697 ATATTCTTCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGA
388 TTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTA
* * * * *
383762 ATTGAATTAAATTACATTTAAGTGATTGTGTTATTTTAATTGTAAAAACTCTTCAAATAGTGCCT
453 ATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCT
* *
383827 ATCAACACTATAAATAGGCACCTCCACGTCATTTGTACTAAGAACTTCATTCATAATAAACTCTT
518 ATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTT-TTTCATAATAAACTCTT
* *
383892 TAAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTAAAGC
582 TGAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGC
* * *
383957 TTTCATCAATTTCATCTCGTTATAGCGTTGGTTCCTATCTCT
647 TTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
*
383999 ACTATAGCTAGTGGGTTACGTTCTACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * * *
384064 TTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATAACTATCATTGTCCACGCCG
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
*
384129 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACAATCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
* * *
384194 TTTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
* * * *
384259 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTTAGTGTTAAATCAAAGCATTGTGAAGTTCT
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
* * ** *
384324 TTCTAGAATCAAGATCGGCCAATCATATATATGATCAAAAACTCATAATCGAGACCATATCATTA
326 TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
* *
384389 TTCATCCATTTTCAATCTACATGGACAACCATCAAAGGGTAAGAAGAATGACAAGTCATTGAATT
391 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATT
* * * * *
384454 GAATTAAACTGCATTTAGGTTATTGTTTTATTTTAATTTTAAAAACTTTTCATATGGTGCCTGTC
456 GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
* *
384519 AACACTATAAATAGGCACCTCCACGATATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAA
521 AACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTT-TTTCATAATAAACTCTTTGA
* *
384584 AAGATTGCATTCATTTTAGTTCTTGGATTAGAAATCTATCGGTTTCTTATCGATCTTGAAGCTTT
585 AAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTT
* *
384649 CATACATTTCATCTTGTTATAGCGTTAGTTCCTAGCTCT
650 CATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
*
384688 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTTGATTCCATCTTTA-TATATTGTTGGT
1 ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
* * * * *
384752 TTCTAACTCATATATAGTTAGAGGGTCACAA-CCGTCCTTTGAATTACTATCATTGTCCACGTCG
66 TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
*
384816 ACCACAAACATCCTTCACAATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
131 ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
** * *
384881 ATTTACAATCCACTTCAAAATGATTCTATCATTTCCATTACTTTCATACACAAATTTAAATATAC
196 ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
384946 ATATTTCCCTTCTTATAA--TT-TTT-TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
261 ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
*
385007 TACTAGAATCAAGATCGAGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
326 TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
* * *
385072 TTCATCCATATTCAATCTACATGGGCAACCATCAAAGGGTTAGAAGAATGAAAAGTCATTTAATT
391 TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATT
* *
385137 GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGT--AAACACTTCATAT-GTTCCTATC
456 GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
* * *
385199 AACACTATAAATAGGAACCTAC-CGACATTTGTACTAAGAAATTTTATCATAATAAACTCTTTGA
521 AACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTT-TCATAATAAACTCTTTGA
385263 AAGATTGC-TTCATTTTAGTTCTTGGATTAGAACTCTATCGG-TTCTTGTCGATCTTGAAGCTTT
585 AAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTT
* *
385326 CATCCATTTCATCATATTATAGCGTTGGTTCCTA
650 CATCCATTTCATCTTGTTATAGCGTTGGTTCCTA
385360 ACTCATATAC
Statistics
Matches: 5478, Mismatches: 603, Indels: 158
0.88 0.10 0.03
Matches are distributed among these distances:
676 181 0.03
677 284 0.05
678 806 0.15
679 47 0.01
680 27 0.00
681 14 0.00
682 3 0.00
683 599 0.11
684 203 0.04
685 2 0.00
686 2 0.00
687 352 0.06
688 478 0.09
689 2276 0.42
690 203 0.04
691 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (688 bp):
ACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGT
TCCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCA
ACCACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTC
ATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATAC
ATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT
TACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTA
TTCATCCATTTTCAATCTACATGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATT
GAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC
AACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTCATAATAAACTCTTTGAA
AGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTC
ATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCT
Found at i:387114 original size:673 final size:670
Alignment explanation
Indices: 385368--389126 Score: 4429
Period size: 674 Copynumber: 5.7 Consensus size: 670
385358 TAACTCATAT
* * * * * *
385368 ACAATCCCTCCTTTGAA-TACTATCATTCTCCATGCC-A--TCAAGCATCCTTCACCATTTTCGT
1 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
***
385429 TACATCCAATCAACCACTATCATCACCACACTTCAAACATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
*
385494 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTATTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * *
385559 TACATTTTCAGTCTTCAATCAAAGCACTGCGAATTTTCTTACTAGAATCAAGATCGGGCAATCAT
196 TACATTTTCAGTCTTAAATCAAAGCACTGCG--------TAGT--AATCAAGAT-AGGCAATCAT
* * * * *
385624 ATATATAATCCAAAAATCATAATCGAGATCATATCATTCTTAATCCATTTTCATTCTACATGGGC
250 ATATATGATCCAAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC
* * * *
385689 AACCATCAAAGTGTAAGAAGAATGAAAAGTCATTTAATTGAATTAAATTTCATTTAGGTCATTGT
315 AACCATCAAAGGGT-AGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTA-GTGATTGT
*
385754 TTTATTTTAATTGTAAAAACTCTTCATATGG-GCCTATCAACACTATAATAGGCACTTCCATGGC
378 TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAATAGGCACCTCCAT-GC
* * *
385818 ATTTG---TAAGAACATTTTGCATAATAAACTCTATGAAAGATTGCTTTCATTTTAATTCTTGGA
442 ATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGA
* ** * *
385880 TTAGAACTCTATCGATTTCTTGTCGGTCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTG
507 TTAGAACTCTATCGGTTTCTTGTCGGTCTTGAAGCCTTCATCCATTTCATCTTG---TAGCGTTG
* *
385945 GTTCCTAGCTCTACTATAGCTAGTGGGT-CGGTTCTACCCTCTATCACTTCGATTCCATCTTTAG
569 GTTCCTAGCTCTACTATAGCTAGTGGTTAC-GTTCCACCCTCTATCACTTCGATTCCATCTTTAG
386009 TATATTGTGGTTTCTAACTC--ATATAGTTAGAGGGTC
633 TATATTGTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * *
386045 ACAATACAACC-TTGAATTACTATCGTTGTCCACGCCAACCACAAACATCCTTCAGCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
386109 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCA-T-T
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* *
386172 AT--TTTCCATTACTTTCATATACATATTTAAATATACATATTT--CTTCTTATAA-TTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * **
386232 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAAATCAAGATTGGGTATCATATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGC---G----TAGT-AATCAAGATAGGCAATCATATA
** * *
386297 TATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTTAATCTACATGGGAAAC
253 TATGATCCAAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAAC
* * * * *
386362 TATCAAAGGGTTAAAAGAATGATAAGTCATTTAATTCAATTAAATTGCATTTAGAAGATTGTTTT
318 CATCAAAGGG-TAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAG-TGATTGTTTT
*
386427 ATTTTAATTGTAAAAACTATTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGCATT
381 ATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTAT-AATAGGCACCTCCATGCATT
** * *
386492 TGTACTTGGAACTTTTTGCATAATAAACTCTTTCAAATATTGCTTTCATTTTAGTTCTTGGATTA
445 TGTACTAAGAACTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTA
*
386557 GAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTGTAGCGTTGGTTCCT
510 GAACTCTATCGGTTTCTTGTCGGTCTTGAAGCCTTCATCCATTTCATCTTGTAGCGTTGGTTCCT
386622 AGCTCTACTATAGCTAGTTGGTTACGTTCCACCCTCTAT-ACTTCGATTCCATCTTTAGTATATT
575 AGCTCTACTATAGCTAG-TGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATT
*
386686 GATGGTTTCTAACTCAAATATAGTTAGAGGGTC
639 G-TGGTTTCTAACTCATATATAGTTAGAGGGTC
* * *
386719 ACAATCCATCCTTTGATTTACTATCACTGTCCACGCCAACCACAAACATCCTACACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
* * *
386784 TACATCCAATCAAACACTATTATCAACACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
*
386849 ATCATTTCCATTACTTTCATACACATATTTATATATACATATTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * *
386914 TACATTTTTAGTCTTCAATCAGAGCACTGCG-AG-AATCAAGATAGGCAAATCATATATATGATC
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGTAGTAATCAAGATAGGC-AATCATATATATGATC
* * * * *
386977 CGAAACTCATAACCGAGATCATA-CAAATATTCATCCATTTTCAATCTACATGGGCAACAATTAA
260 CAAAACTCATAATCGAGATCATATC-ATTATTCATCCATTTTCAATCTACATGGGCAACCATCAA
* * *
387041 AGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTACATTTAAGTGATTGTGTTATTTTA
324 AGGGT-AGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTT-AGTGATTGTTTTATTTTA
387106 ATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGACATTTGTAC
387 ATTGTAAAAACTCTTCATATGGTGCCTATCAACACTAT-AATAGGCACCTCCATG-CATTTGTAC
** * * *
387171 TAAGAACATCATT-CATAATAAACTCTTTAAAAGATCGCATTCATTTTAGTTCTTGGATTAGAAC
450 TAAGAAC-TTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAAC
* *
387235 TCTATCGGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTA
514 TCTATCGGTTTCTTGTCGGTCTTGAAGCCTTCATCCATTTCATCTTG---TAGCGTTGGTTCCTA
* *
387300 GCTTTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGCATATTG
576 GCTCTACTATAGCTAGT-GGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTG
387365 TTGGTTTCTAACTCATATATAGTTAGAGGGTC
640 -TGGTTTCTAACTCATATATAGTTAGAGGGTC
* * *
387397 ACAATCCATCCTTTGAATAACTATCATTGTCCACGCCGACCACAAACATACTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
* * * *
387462 TACATCCAATCAACCACAACCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTGATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
387527 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTT-CCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * * *
387591 GACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTTCTACTAT-AATCGATCGGGAATCATATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGTAG----TA--ATCAA--GATAGGCAATCATATA
* * *
387655 TATGATCCAAAACTCATAATCGATATCATATTATTATTCATCCATTTTCAATCTACATGGGAAAC
253 TATGATCCAAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAAC
*
387720 CATCAAAGGGTAGAATAATGACAAGTCATTTAATTGAATT-AATTGCATTTAGCTGATTGTTTTA
318 CATCAAAGGGTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAG-TGATTGTTTTA
* * * * *
387784 TTTTAA-TGTAGAAAC-CTTCATAT-GTTCCTATAAACACTATAATAGGAACCT-CACGCATTTG
382 TTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAATAGGCACCTCCATGCATTTG
*
387845 TACTAAGAACTTTTT-C---ATAAACTC-TTG-AA-ATTGCATTCATTTTAGTTCTTGGATTAGA
447 TACTAAGAACTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGA
* * * * * * *
387903 ACTCTATCAG-TTCATATCGATCTTAAAGCTTTCATCCATTTCATCTTATTATAGC-TTGGTTCC
512 ACTCTATCGGTTTCTTGTCGGTCTTGAAGCCTTCATCCATTTCATC---TTGTAGCGTTGGTTCC
* *
387966 TAGCTCTACTATAGCTGGT-GTT-C-TTCCA-CC-CTATCAC-TCGATTCCGTCTTTA-TATATT
574 TAGCTCTACTATAGCTAGTGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATT
*
388024 GT--TTTCCAAACT-ATATATAGTTAGAGGGTC
639 GTGGTTT-CTAACTCATATATAGTTAGAGGGTC
* * *
388054 AC-ATCCATCC-TTG-ACTACTATCA-T-TCCACGCCAACCACAAGCATCCTTCACCATTTTCGT
1 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
* * *
388114 TACATCCAATCAACCACTA-CATCACCACACTTCTTT--TTT--ATTCCACATC-ACTTCA-ACT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * *
388172 -TCA-TTCTA-T-CTTCCATTCACAT-TTTAAATATACAT-TTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * **
388231 TACATTTTCA-TCTTTAATCAAAGCACTGCGAAGTTTTCTTACTAGAATCAAGATCGCAATC--A
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGTAGTAATC--A--AG-AT--AG---GCAATCATA
*
388293 TATATGA---AAAACTCATAATCGAGATCATATCATTATTCATCCA-TTTCAATCTTCATGGG-A
251 TATATGATCCAAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* *
388353 ACCATCAAAGTGGTAGAAGAATGACAAAGTCA-TTAATTGAATTAAATTTCAATTAG-GATTGTT
316 ACCATCAAAG-GGTAGAAGAATGAC-AAGTCATTTAATTGAATTAAATTGCATTTAGTGATTGTT
* *
388416 TTATTTTAATTGT--AAA--C-TC-TATGGTTCCTATCAACACTAT-ATA-ACACCTCCATGGCA
379 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAATAGGCACCTCCAT-GCA
*
388473 TTTGTAC-AAGAAC-TTTTGCATAATAAA-TCTCTGAAAGATTGCTTTCATTTTAGTTCTTGGAT
443 TTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGAT
* *** ** * *
388535 TAGAA-TCTATTGGTTTCTTGTC-GTCTTGTATTTCGCCATCCATTTCATCTGTTATAGCTTTGG
508 TAGAACTCTATCGGTTTCTTGTCGGTCTTG-AAGCCTTCATCCATTTCATC--TTGTAGCGTTGG
* * * * *
388598 TTCCTAGCTCTACAATAACTA-TAGTCACGTTCCACACTCTATCACTT-GATTCCATC-TTAGTA
570 TTCCTAGCTCTACTATAGCTAGTGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTA
*
388660 TA-TGTTGTTTCTAACTCATATATAGTTAGAGGGTCC
635 TATTGTGGTTTCTAACTCATATATAGTTAGAGGGT-C
*
388696 ACAATCCATCCTTT-AATTACTATCATTGTCCACGCC-ACCACAAACATCCTTTACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
* *
388759 TACATCCAATCAACCACTATCATCACCA-ACTTCTTTCATTTATAATCCACTTCAACTACATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * * *
388823 ATCGTTTCCATTACTTTCATAAACATA-TTAAATATA-ATATTTCCCTTCTTTTAACG-TATTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* *
388885 TACATTTTCAGTCTT-AATCAAAGCACTGGCGAATTCTTAATAGAATCAAGATCGGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACT-GCG------TAGT--AATCAAGAT-AGGCAATCATA
* * *
388949 TATAT-AT-C-AAATTCATAATCG-GATTATGTCATTA-TCATCCATTTTC-ATCT-CATGGGCA
251 TATATGATCCAAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* * *
389007 TCCATCAAATGGTAGAAGAATGACAAGTCATTTTAATTGAATTAAATT-C-TATTAGGAGATTGT
316 ACCATCAAAGGGTAGAAGAATGACAAGTCA-TTTAATTGAATTAAATTGCAT-TTA-GTGATTGT
* *
389070 TTTATTTTAATTGT---AACTCTTCATATGGTG--AATCAACACTATAATATGCACCTCCAT
378 TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAATAGGCACCTCCAT
389127 CACGTTCCCC
Statistics
Matches: 2704, Mismatches: 239, Indels: 297
0.83 0.07 0.09
Matches are distributed among these distances:
630 8 0.00
631 15 0.01
632 28 0.01
633 4 0.00
634 10 0.00
635 49 0.02
636 117 0.04
637 53 0.02
638 6 0.00
639 33 0.01
640 74 0.03
641 32 0.01
642 9 0.00
643 12 0.00
644 14 0.01
645 54 0.02
646 21 0.01
647 11 0.00
649 11 0.00
650 5 0.00
651 18 0.01
652 58 0.02
653 29 0.01
654 83 0.03
655 81 0.03
656 38 0.01
657 29 0.01
658 22 0.01
659 3 0.00
660 6 0.00
661 17 0.01
662 7 0.00
663 4 0.00
664 5 0.00
665 1 0.00
666 3 0.00
668 25 0.01
669 37 0.01
670 183 0.07
671 90 0.03
672 69 0.03
673 221 0.08
674 242 0.09
675 109 0.04
676 51 0.02
677 140 0.05
678 224 0.08
679 50 0.02
680 93 0.03
681 18 0.01
682 44 0.02
683 26 0.01
684 29 0.01
685 78 0.03
686 5 0.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (670 bp):
ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCCT
TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
TACATTTTCAGTCTTAAATCAAAGCACTGCGTAGTAATCAAGATAGGCAATCATATATATGATCC
AAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAG
GGTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGTGATTGTTTTATTTTAATTG
TAAAAACTCTTCATATGGTGCCTATCAACACTATAATAGGCACCTCCATGCATTTGTACTAAGAA
CTTTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCG
GTTTCTTGTCGGTCTTGAAGCCTTCATCCATTTCATCTTGTAGCGTTGGTTCCTAGCTCTACTAT
AGCTAGTGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTGGTTTCTAAC
TCATATATAGTTAGAGGGTC
Found at i:392649 original size:689 final size:688
Alignment explanation
Indices: 385368--399966 Score: 8837
Period size: 689 Copynumber: 20.9 Consensus size: 688
385358 TAACTCATAT
* * * * * * *
385368 ACAATCCCTCCTTTGAA-TACTATCATTCTCCATGCC-A--TCAAGCATCCTTCACCATTTTCGT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
***
385429 TACATCCAATCAACCACTATCATCACCACACTTCAAACATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
*
385494 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTATTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * *
385559 TACATTTTCAGTCTTCAATCAAAGCACTGCGAATTTTCTTACTAGAATCAAGATCGGGCAATCAT
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATTGGGCAATCAT
* * * * * *
385624 ATATATAATCCAAAAATCATAATCGAGATCATATCATTCTTAATCCATTTTCATTCTACATGGGC
260 ATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC
* * * *
385689 AACCA-TCAAAGTGTAAGAAGAATGAAAAGTCATTTAATTGAATTAAATTTCATTTAGGTCATTG
325 AACCATTAAAAG-GTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG
* *
385753 TTTTATTTTAATTGTAAAAACTCTTCATATGG-GCCTATCAACACTAT-AATAGGCACTTCCATG
389 TTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACG
* * * * * *
385816 GCATTTG---TAAGAACATTTTGCATAATAAACTCTATGAAAGATTGCTTTCATTTTAATTCTTG
454 ACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTG
* * * * *
385878 GATTAGAACTCTATCGATTTCTTGTCGGTCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTT
519 GATTAGAACTCTATCGGTTTCTTGTCGATCTTG-ATTCTTCAACCATTTCATCTTGTTATAGCGT
*
385943 TGGTTCCTAGCTCTACTATAGCTAGTGGG-T-CGGTTCTACCCTCTATCACTTCGATTCCATCTT
583 TGGTTCCTAGCTCTACTATAGCTAGTGGGTTAC-GTTCCACCCTCTATCACTTCGATTCCATCTT
386006 TAGTATATTG-TGGTTTCTAACTC--ATATAGTTAGAGGGTC
647 TAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * * *
386045 ACAATACAACC-TTGAATTACTATCGTTGTCCACGCCAACCACAAACATCCTTCAGCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
386109 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCA-T-T
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* *
386172 AT--TTTCCATTACTTTCATATACATATTTAAATATACATATTT--CTTCTTATAA-TTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
*
386232 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTA-AATCAAGATTGGG-TATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
* * *
386295 TATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTTAATCTACATGGGAA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* * * * * **
386360 ACTATCAAAGGGTTAA-AAGAATGATAAGTCATTTAATTCAATTAAATTGCATTTAGAAGATTGT
326 ACCATTAAAAGG-TAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGT
* *
386424 TTTATTTTAATTGTAAAAACTATTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATG-
390 TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGA
** * * * *
386488 CATTTGTACTTGGAACTTTTTGCATAATAAACTCTTTCAAATATTGCTTTCATTTTAGTTCTTGG
455 CATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGG
* * ** *
386553 ATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATTTCATCTTG---TAGCGTT
520 ATTAGAACTCTATCGGTTTCTTGTCGATCTTG-ATTCTTCAACCATTTCATCTTGTTATAGCGTT
*
386615 GGTTCCTAGCTCTACTATAGCTAGTTGGTTACGTTCCACCCTCTAT-ACTTCGATTCCATCTTTA
584 GGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTA
* *
386679 GTATATTGATGGTTTCTAACTCAAATATAGTTAGAGGGTC
649 GTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * *
386719 ACAATCCATCCTTTGATTTACTATCACTGTCCACGCCAACCACAAACATCCTACACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * *
386784 TACATCCAATCAAACACTATTATCAACACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
*
386849 ATCATTTCCATTACTTTCATACACATATTTATATATACATATTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * * *
386914 TACATTTTTAGTCTTCAATCAGAGCACTGC---G--------AGAATCAAGA-TAGGCAAATCAT
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGC-AATCAT
* *
386967 ATATATGATCCGAAACTCATAACCGAGATCATA-CAAATATTCATCCATTTTCAATCTACATGGG
260 ATATATGATCCGAAACTCATAATCGAGATCATATC-ATTATTCATCCATTTTCAATCTACATGGG
* * * * *
387031 CAACAATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTACATTTAAGTGATTG
324 CAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG
* *
387096 TGTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATG
389 TTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACG
* ** * *
387161 ACATTTGTACTAAGAACATCATTCATAATAAACTCTTTAAAAGATCGCATTCATTTTAGTTCTTG
454 ACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTG
** *
387226 GATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTGTTATAGCGT
519 GATTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGT
*
387291 TGGTTCCTAGCTTTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTT
583 TGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTT
*
387356 AGCATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
648 AGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * *
387397 ACAATCCATCCTTTGAATAACTATCATTGTCCACGCCGACCACAAACATACTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * * *
387462 TACATCCAATCAACCACAACCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTGATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
387527 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTT-CCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * *
387591 GACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTT-TCTACTATAATC--GATCGGG-AATCAT
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCT-TACTAGAATCAAGATTGGGCAATCAT
* * * *
387652 ATATATGATCCAAAACTCATAATCGATATCATATTATTATTCATCCATTTTCAATCTACATGGGA
260 ATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC
* * * *
387717 AACCATCAAAGGGT-AGAATAATGACAAGTCATTTAATTGAATT-AATTGCATTTAGCTGATTGT
325 AACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGT
* * * *
387780 TTTATTTTAA-TGTAGAAAC-CTTCATAT-GTTCCTATAAACACTAT-AATAGGAACCT-CACG-
390 TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGA
387839 CATTTGTACTAAGAAC-TTTTTC---ATAAACTC-TTG-AA-ATTGCATTCATTTTAGTTCTTGG
455 CATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGG
* * * * ** * *
387897 ATTAGAACTCTATCAG-TTCATATCGATCTTAAAGCTTTCATCCATTTCATCTTATTATAGC-TT
520 ATTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTT
* *
387960 GGTTCCTAGCTCTACTATAGCT-G-GTGTT-C-TTCCA-CC-CTATCAC-TCGATTCCGTCTTTA
584 GGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTA
* *
388018 -TATATTGTT--TTCCAAACT-ATATATAGTTAGAGGGTC
649 GTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * *
388054 AC-ATCCATCC-TTG-ACTACTATCA-T-TCCACGCCAACCACAAGCATCCTTCACCATTTTCGT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * *
388114 TACATCCAATCAACCACTA-CATCACCACACTTCTTT--TTT--ATTCCACATC-ACTTCA-ACT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * *
388172 -TCA-TTCTA-T-CTTCCATTCACAT-TTTAAATATACAT-TTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* *
388231 TACATTTTCA-TCTTTAATCAAAGCACTGCGAAGTTTTCTTACTAGAATCAAGA-T-CGCAATC-
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAG--TTCTTACTAGAATCAAGATTGGGCAATCA
* *
388292 -ATATATGA---AAAACTCATAATCGAGATCATATCATTATTCATCCA-TTTCAATCTTCATGGG
259 TATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* * * *
388352 -AACCATCAAAGTGGT-AGAAGAATGACAAAGTCA-TTAATTGAATTAAATTTCAATTA-G-GAT
324 CAACCATTAAA-AGGTAAGAAGAATGAC-AAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
* *
388412 TGTTTTATTTTAATTGT--AAA--C-TC-TATGGTTCCTATCAACACTAT--ATA-ACACCTCCA
387 TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
* * * * *
388468 TGGCATTTGTAC-AAGAAC-TTTTGCATAATAAA-TCTCTGAAAGATTGCTTTCATTTTAGTTCT
452 CGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCT
* ** *
388530 TGGATTAGAA-TCTATTGGTTTCTTGTCG-TCTTGTATTTCGCCATCCATTTCATC-TGTTATAG
517 TGGATTAGAACTCTATCGGTTTCTTGTCGATCTTG-A-TTCTTCAACCATTTCATCTTGTTATAG
* * * * * *
388592 CTTTGGTTCCTAGCTCTACAATAACTA-T-AGTCACGTTCCACACTCTATCACTT-GATTCCATC
580 CGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATC
388654 -TTAGTATA-TGTT-GTTTCTAACTCATATATAGTTAGAGGGTCC
645 TTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGT-C
* *
388696 ACAATCCATCCTTT-AATTACTATCATTGTCCACGCC-ACCACAAACATCCTTTACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* *
388759 TACATCCAATCAACCACTATCATCACCA-ACTTCTTTCATTTATAATCCACTTCAACTACATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * * *
388823 ATCGTTTCCATTACTTTCATAAACATA-TTAAATATA-ATATTTCCCTTCTTTTAACG-TATTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* *
388885 TACATTTTCAGTCTT-AATCAAAGCACTGGCGAA-TTCTTAATAGAATCAAGATCGGGCAATCAT
196 TACATTTTCAGTCTTAAATCAAAGCACT-GCGAAGTTCTTACTAGAATCAAGATTGGGCAATCAT
* * *
388948 ATATAT-AT-C-AAATTCATAATCG-GATTATGTCATTA-TCATCCATTTTC-ATCT-CATGGGC
260 ATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC
* * * *
389006 ATCCATCAAATGGT-AGAAGAATGACAAGTCATTTTAATTGAATTAAATT-C-TATTAGGAGATT
325 AACCATTAAAAGGTAAGAAGAATGACAAGTCA-TTTAATTGAATTAAATTGCAT-TTAGGTGATT
* *
389068 GTTTTATTTTAATTGT---AACTCTTCATATGGTG--AATCAACACTAT-AATATGCACCTCCAT
388 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA-
* **** * ** * * * ** * * ** * * * *
389127 C-ACGTTCCCCCTCTATCACTTCGATTCCAT-CTTTAGTATGTTG-TTGGTTCCTAACTCATATA
452 CGACATTTGTACT-AAGAACTT--TTTTCATAATAAACTCT-TTGAAAGATTGC--ATTCAT-TT
* * * * ** * * ** ** *
389189 TAG-T-TAGACATTCACAA-TCATCATTGAATT-ATATC-ATTCTCT-ACACCAACACAAACATC
510 TAGTTCTTG-GATT-AGAACTC-T-ATCGGTTTCTTGTCGA-TCT-TGA-TTC--TTCAACCAT-
* * *** * * * * ** * *
389248 ATTCACCAT-TT-T--CGTTACATCCAATCAACCACTA-TCATCAGCACACT-TCTTTCATTTAC
565 -TTCATCTTGTTATAGCGTTGGTTCC--T--AGCTCTACT-AT-AGC-TAGTGGGTTAC-GTT-C
* * * * * ** ** * * **
389307 AATCCATGTA-AACTTC-ATTCTATC---A-T-T-TTCACTACTTTC-ATACACATATTTAAATA
620 CA-CCCTCTATCACTTCGATTCCATCTTTAGTATATT-GTTGGTTTCTA-ACTCATATATAGTTA
*
389363 TA---T-
682 GAGGGTC
* * * * ** * * * * * * *
389366 ATATTCCCTTC-TT-AAGTTGTTTGTAAATT-TCCA-GTCTTAATCAAAGAACTTGTCATCTTCT
1 ACAATCCATCCTTTGAA-TT-ACTAT-CATTGTCTACG-C-CAACCACA-AAC--ATC--CTTC-
* * * * * * * * * *
389427 AACC-TTGATTCC-TACCTCTGCTAT-AGCTAGTGGGTCA-CGTTCCAC-CCTCTATCACTT-CG
55 -ACCATT--TTCCTTACATC--CAATCAACCACT--ATCATC--ACCACACTTCTTTCATTTAC-
* * * ** * ** * *
389486 ATTCCATCTTTAGTATGTTGTTGGTTCCTAACTCATATATAGTTAGACATTCACA-ATCCATCAT
110 AATCCA-CTTCA--A----CTTCATT-CT-A-TCATTTCCA-TT--ACTTTCATACA--CAT-AT
* ** * * * ** * **
389550 TTGAAT-TACTATCATTCTCTACACCAAC-CACAAAC-ATCATT-CACCATTTTC-GTTACATCC
159 TTAAATATAC-AT-A-T-T-T-C-CCTTCTTA-TAACGTTGTTTGTA-CATTTTCAG-T-C-TTA
* * * * * *** * *
389610 AATCAACCA-CTATCATCACCACACTTCTTTCATTTACAATCCACTTCA-ACTTCATTCTATCTT
212 AATCAA--AGC-A-C-T-GCGA-AGTTC-TT-A-CTAGAAT-CA----AGA-TT-GGGCAATCAT
* * * * *** * *
389673 TTCCAT-TGCTTTTATACACATATTTAAATATACATATTTC-CCTTCTTATAACATTGTTTGTAC
260 AT--ATATG-----AT-C-C-----GAAA-CT-CATA-ATCGAGATC--ATATCA-T-TAT-T-C
* * * * * * *
389736 ATTTTCAGTCTTCAATCTAAGCACTGCG-AATTTTC-TTACAA-G-AATCAAG-ATCGGGCAA-T
302 A--TCCA-TTTTCAATCT-A-CA-TGGGCAA---CCATTAAAAGGTAA-GAAGAAT--GACAAGT
* * *** * * * ** **
389795 CATAT-ATATG-ATCCAAAACACATAATTGAGATCATAT-CTTTATTAATCCATT-T-TCAA-TC
355 CATTTAAT-TGAAT-TAAATTGCAT--TT-AGGTGAT-TGTTTTATT--TTAATTGTAAAAACTC
* * * * * * * * * * *
389854 TGC--ATGG-GCAACAATCAA-AGTGTAAGA-A-G-A-ATGACAAGTCATTT-AATTGAATTAGA
412 TTCATATGGTGC--CTATCAACACTATAA-ATAGGCACCT-CCACGACATTTGTACT-AA-GA-A
* ** ** * * * * * * * * *
389910 TTTCATTTAGGTCATTTTTTATTTTAATTGTAAAAACT-C-TTCA-TATGGTGCCT--ATCA-AC
470 CTT--TTT---TCATAATAAACTCT--TTG-AAAGATTGCATTCATTTTAGTTCTTGGATTAGA-
* * * * * * ** **
389969 ACTATAAATTGGCACTTCCATGGC-AT-TTG-TACTAAGAACTTTTTGCATAATAAACAATCTGA
526 ACTCT--ATCGG---TTTCTTGTCGATCTTGATTCT-TCAACCATTT-C---AT---C--T-TG-
** * ** ** ** * * * * * * *** * * *
390031 AAAATTGC-TTTCTTTTTAATTCTTGGATTAGAACTCCA-TCGGTTTCTTATCGGTCTTGTGTTC
574 -TTATAGCGTTGGTTCCTAGCTC-T--ACTATAGCT--AGTGGGTTACGT-TCCACCCTCT-ATC
* * * * * * ** * * *
390094 GTCATCCATTTCATC-TT-GT-TATAGATTTGGTTCCTGGCTC-TACTATTGCTAGTGGGTC
631 -ACTTCGATTCCATCTTTAGTATATTG--TTGGTTTCTAACTCATA-TATAGTTAGAGGGTC
** * * * ** *
390152 ACGTTCCACCCTCTATAACTTCGATTCCATCTTTCGTATATTGTTGATTTCTAC-CTCAAATATA
1 ACAATCCATCCT-T-TGA-----ATT--A-CTATC----A---TTG---TCTACGC-CAACCACA
* ** * ** * * ** * *
390216 GATAGA-GGTTCACAATCCATCCTTTGAAATACC-ATCATTGTCCAC-GCCAACCACAACATCCT
45 -A-ACATCCTTCACCAT-TTTCC-TT-ACAT-CCAATCA---ACCACTATC-ATCACCACA--CT
* * * ** *
390278 TCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
98 T---C--TTTCATT---TACAATCCA---CT-TCA--ACTTCA-TTCTATCA-TT----TCCA-T
* * * *** * *
390343 TCAAC-TTCATTCTATCGTTTCCATTACTTT-CATATACTTATTTAAATATATATATTTCCATTC
142 T--ACTTTCA---TA-C----ACA-TA-TTTAAATATACATATTTCCCT-TCT-TA--T--A-AC
* * * *
390406 TTATAACATTGTTTGTACATATTCAGTCTTAAATTAAAGCACTGCGAAGTTCTCACTAGAATCAA
188 -------GTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAA
*
390471 GATTGGGCAATCATATATATGATCCGAAACTCATAATCGAGATCATATCTTTATTCATCCATTTT
246 GATTGGGCAATCATATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTT
* * * *
390536 CAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGAAAACTCATTGAATTGAATTAAATTGC
311 CAATCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGC
*
390601 ATTTAGTTGA-TG--TT-TTTT-ATTGTAAAAAACTCTTCATATGGTGCCTATCAACACTATAAA
376 ATTTAGGTGATTGTTTTATTTTAATTGT-AAAAACTCTTCATATGGTGCCTATCAACACTATAAA
* * * *
390661 TAGGCACCTCCACAACATTTGTACTAAGAACTTCTTTCATAATAAACTCTTTAAAATATTGCATT
440 TAGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATT
* * *
390726 CATTTTAGTTCTTGGATAAGAACTTTATCGGTTTCTTGTCGATCTTGAATCTTTCAACCATTTCA
505 CATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCA
* * * * *
390791 TCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCAAGTGTGTTATGTTCCACCCTCTGTCTCT
569 TCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACT
*
390856 TCGATTCCATCTTTAGTATATTGTTGGTTTCTGACTCATATATAGTTAGAGGGTC
634 TCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * *
390911 ACAATCCATCCTTTGAATTACTATCATTTTCTACGCCGACCAAAAACATCCTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * * * *
390976 TATATCAAATCAACCACTATCATCACCACACTTCTTTTATTTACAATCCACTTCAACTTGATTAT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* *
391041 ATCATTTCCATTACTTTCATACACATATTTAAGTATACATATTTCCCTTCTTATAATG-TGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* *
391105 TACATTTTCAGCCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATC-AGATCGGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
*
391169 TATATGATCTGAAA-TCATAATCGAGATCATATCATTATTCATCCATTTTC-ATCTACATGGGCA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* * *
391232 ACCA-TAAAGGGTTAGAAGAATGACATGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
* * * * * * *
391296 TTATTTTATTTGTAAAAACTCTTCATATGTTGTCTATCAACACTATAAATAGGAACATGCATGAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
* * *
391361 ATTTGTTCTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTATTAGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
* * ** * * *
391426 TTAGAACTCTTTTGGTTTCTTGTCGATCTTGAAGCTTTCAAACATTTCATCTTATTATAGTGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* * * * *
391491 GTTACTAGCTCTACTATAGCTAGTGTGTTACGTACCACCCTCTATCACATCGATTCCATATTTAG
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
* *
391556 TATATTGTTGGTTCCTAA---AT-CATAGTTAGAGGGTC
650 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * * *
391591 ACAATCCATTCTTTGAA-TACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCGT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* *
391655 TACATCCAATCAACTACTATCATCACCGCACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
*
391720 ATCATTTCCATTACTTTCGTACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * * * * *
391785 TACATTTTCAATCTTCAATCAAAGCACTACGAATGTTCTTAATAGAATCTAGATCGGG-AATTCA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATTGGGCAA-TCA
** *
391849 TATATATGATCTAAAACTCATAATCGAGATCATATCATTATTAATCCATTTTCAATCTACATGGG
259 TATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* * * * **
391914 AAACCA-TCAAAGTGTAAGAAGAATGACAAGTCATTTAATT-AATTAAATTTCATTTTGGTCTTT
324 CAACCATTAAAAG-GTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * **
391977 GTTTTATTTTAATTGTAAAATCTCTTCATATGGTGCCTATCAACACTATAAACAGGCACCTCCGT
388 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAC
* * * * * *
392042 GGCATTTGTACTAATAAATTTTTTCATAATAAACTCTCTGAAAGATTGCTTTCATTTTAATTCTT
453 GACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTT
* * * * *
392107 GGATTAGAACTCTATCGGTTTCTTGTCGGTCTTGTATTCGTCATCCATTTCATATTGTTATAGCT
518 GGATTAGAACTCTATCGGTTTCTTGTCGATCTTG-ATTCTTCAACCATTTCATCTTGTTATAGCG
* * * * * *
392172 TTGGTTCAT-GTCTTTACTATAGCTAGCGGGTCACGTTCCACCCTCTATCACTTCGATTCCGTAT
582 TTGGTTCCTAG-CTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCT
* *
392236 TTAGTATATTTTTGGTTTCTAACTCATATATAGTTAGAAGGTC
646 TTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * *
392279 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACAACAAACATCCTTCAACATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* *
392344 TACATCCAATCAACCACTATCATCGCCACACTTCTTTCATTTACAATCCACTTCAACTTCATTAT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * **
392409 ATCGTTTCCATTACTTTCATATACATATTTAAATATACATATTTCTATTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
*
392474 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTAGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
*
392539 TATATGATCCGAAACTCATAATCGAGATGATATCATTATTCATCCATTTTCAATCTACATGGGCA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* *
392604 ACGATTAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
*
392669 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACAAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
* ** *
392734 ATTTGTACTAAGAACTTCTTTCATAATAAACTCTTAAAAATATTGCATTCATTTTAGTTCTTGGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
* *
392799 TTAGAACTCTATCGGTTTCTTGTCGATCTTGAATCTTTCATCCATTTCATCTTGTTATAGCGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* *
392864 GTTCCTAGCTCTACTATAGCAAGTGGGTTATGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
392929 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
650 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
*
392968 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCGACCACAAACATCCTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* *
393033 TACATCCAATCAACCACTATCATCACCACACTTCTTTTATTTACAATCCACTTCAACTTGATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * **
393098 ATCATTTCCATTACTTTGATACACATATTTAAGTATACATATTTCCCTTCTTATAATTTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* *
393163 TACATTTTCAGCCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
* ** *
393228 TATGTGATCTAAAACTCATAATCGAGATCATATCATTATTCATCAATTTTCAATCTACATGGGCA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* * *
393293 ACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
* * * *
393358 TTATTTTAATTGTAAAAACTCTTCATATGTTGCCTATCAACACTATAAATAGGAACATGCACGAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
* ** *
393423 ATTTGTACTAAGAACTTCTTTCATAATAAACTCTTAAAAATATTGCATTCATTTTAGTTCTTGGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
* * *
393488 TAAGAACTTTATCGGTTTCTTGTCGATCTTGAATCTTTCAACCATTTCATCTTGTTATAGCGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* * * * * *
393553 GTTCCTAGCTCTACTATACCAAGTGTGTTATGTTCCACCCTCTATCTCTTCGATTCCATCGTTAG
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
*
393618 TATATTGTTGGTTTCTGACTCATATATAGTTAGAGGGTC
650 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * *
393657 ACAATCCATCCTTTGAATTACTATCATTTTCTACGCCGACCAAAAACATCCTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * * *
393722 TATATCCAATCAACCACTATCATCACCACACTTCTTTTATTTACAATCCACTTCAACTTGATTAT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* *
393787 ATCATTTCCATTACTTTCATACACATATTTAAGTATACATATTTCCCTTCTTATAATGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
*
393852 TACATTTTCAGCCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
* * *
393917 TATATGATCCGAAACTCATAATCGAGATCATTTCATTATTCATCCATTTTCAATCTAGATGGGTA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* *
393982 ACGATTAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
* * * * *
394047 TTATTTTAATTGTAAAAACACTTCATATGTTTCCTATCAACACTATAAATAGGAACCTGCACGAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
*
394112 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTAGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
** *
394177 TTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTCAACCATTTCATCTTATTATAGCGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* * * *** *
394242 GTTCCTAGCTCTACCATAGCTAGTGTGTTACGTTCTACCCTCTATCACGTTATTTGTACAT-TTT
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCAC-TTCGAT-TCCATCTTT
* * * *** * * ** * ***
394306 --T-CAGTCTT-CAATCTAAGCACTGCAAATTTTCTTACAAAATC
648 AGTATATTGTTGGTTTCT-A--ACT-CATATATAGTTAGAGGGTC
* ** ** * * * * * ** *
394347 A-AGATCGGGCAATCATATATGATCCAAAAC-A-CATAATCGA-G---ATCA-TATCTTTATTAA
1 ACA-ATC---C-ATCCT-T-TGA---ATTACTATCATTGTCTACGCCAACCACAAACATCCTTCA
* * * ** * ** * * * * * *
394404 TCCATTTTCAATCTGCATGGGCAACCATCAAAGTGTAACAAGAATGACAAGTCATTTATTTGAAT
56 -CCATTTTC-CT-TACAT---C--CAATC-AA---CCACTATCATCACCA--CACTTCTTTCATT
* * * * * * ** *
394469 TA-AATTTCA-TTTAGGACATT-GTTTTATTTTAATTGTACAATCT-CTTT-ATATGGTGCCTA-
107 TACAA-TCCACTTCA--AC-TTCATTCTA---TCATT-T-CCAT-TACTTTCATA---CACATAT
* * * ** * * * * *
394528 TCAACACTATA-A-ATTGGCACC-TC-CATGGCATTTGTACTAAGAAC-TTTT-TG-CAT-AAT-
159 TTAA-A-TATACATATT-TC-CCTTCTTATAAC-GTTGT--T-TGTACATTTTCAGTCTTAAATC
* * ** ** * * * *
394584 AAA-CTCT-CTGAAAGATTTCTTTCATTTTAATTCTTGGATT-AG-AACTCTATCGGTTTCTTG-
216 AAAGCACTGC-G-AAG--TTC-TT-ACTAGAA-TC-AAGATTGGGCAA-TC-AT--ATAT-ATGA
** ** ** ** * * * ** * *
394644 T-CG-GTCTTGTGTTCGTCATCCATTTCATCT-TGTTAT--AGCTTT-GGT-TAC-T-GGC-TCT
268 TCCGAAACTCATAATCGAGAT-CATATCAT-TAT-TCATCCA-TTTTCAATCTACATGGGCAACC
* * * * * * * **
394699 ACT-ATAGCT-AG-TG--GGTCACGTTCCACCCTCTATAACTTCG-ATTCCA-T-C-TTTA-GTA
329 ATTAAAAGGTAAGAAGAATGACAAG-T-CA---T-T-TAA-TT-GAATTAAATTGCATTTAGGT-
* * * * * * ** * * *
394754 TATTG-TTGATTTCTACTTCATATATAGTTAGA-TGTTCACAATCCAT-CCTCTGAAATACTAT-
384 GATTGTTTTATTT-TAATT-GTA-A-A---A-ACTCTTCA-TAT-GGTGCCTAT-CAACACTATA
* * * * * **** * ** * * *
394815 CATTGTC-CATGCCAACCACAAACATCCT-TCACCATTTTCCTTACATCCAATCAACAACTATCA
438 AATAGGCACCT-CC-ACGACATTTGTACTAAGAAC-TTTT--TT-CAT--AAT--A-AACTCT-T
* * * * * * * ** * * **
394878 TCACCACACTT-CTTTCATTTACAATCCACTTCAACTT--CATTCTATC-GTTTCTAT-TACTTT
491 TGA-AAGA-TTGCATTCATTT-TAGT--TCTTGGA-TTAGAACTCTATCGGTTTCT-TGT-CGAT
* ** * * **
394938 CATATACATAT-TT-AAATATATAT-ATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAG-TC
548 C-T-T-GAT-TCTTCAACCAT-T-TCA--T--CTTGTTATAGCGTTG---GT---TCCT-AGCTC
* * * * * * ** * * * * *
394999 TTAAATCAAAGC-ACTGCG--AAGTTCTTA--CTAGAATCAAGATTGGGTAAT-CATATATATGA
596 -T-ACT-ATAGCTAGTGGGTTACGTTC-CACCCT-CTATC-A-CTT-CG-ATTCCATCTTTA-G-
* * * * * * * *
395058 TCCGAAACTGATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGTA
650 T---ATATTG-T--T-G-G-T--T-TC-TAACTCAT--A-TAT-AGT-TAGA-GGGTC
* ** ***** * * ** * ** * *
395116 ACCATTAAAGGGTAAGAAGAATGACAACTCATTGAAT-TG--AATTA-AATTGCAT--TT-AGGT
1 A-CAATCCA---TCCTTTGAATTACTA-TCATTGTCTACGCCAACCACAA--ACATCCTTCA--C
* * * * ** * *** ** *
395174 GATTGTT--TTATAT-TAATTGTAAAAACTCTTCAT-ATGGTGC-CTATC-AACACTATA-AATA
57 CATT-TTCCTTACATCCAA-T-CAACCACT-ATCATCA--CCACACT-TCTTTCA-TTTACAAT-
* * * ** * **** * * *
395232 GGCACCTCCACAACATT-TGT-ACTAAGAACTT-CTTTCATA-ATAAACTCTTAAAAATATTGCA
113 -CCACTTCAACTTCATTCTATCA-TTTCCA-TTACTTTCATACACATA-T-TT--AAATA-TACA
*** * * * * * * ** ***
395293 TTCATTTTAGTTCTTGGATTAGAACTCATTCGGTTTCTTGCCGATCTTGAATCTTTCATCCATTT
170 -T-ATTTCCCTTCTT--A-T--AA--CGTT--GTTT-GT-AC-ATTTTCAGTCTTAAAT-CAAAG
** * * * * * * * * * * **
395358 CATCTTGTTATAGCGTTGGTTCCTAG-CTCTA-CTAT-AGCAAGT-GTGT-TACGTTCC-ACCCT
220 CA-C-TGCGA-A--GTT-CTTACTAGAATCAAGAT-TGGGCAA-TCATATATATGATCCGAAACT
* *** * *** * *
395417 C-T-ATC----TC-T-TCGA-T-TCCAT-C-TTTAGTATATTGTTGGTTTCTAACTCA-TATATA
277 CATAATCGAGATCATATC-ATTATTCATCCATTTTCAATCTACATGG--GC-AAC-CATTA-AAA
* ** * * * * *******
395469 -GTTAG-AGGGTCACAA-TCCATCCT--TTG-ATTACTATCATTG--TCTACGCTGACCAAAACA
336 GGTAAGAAGAATGACAAGT-CAT-TTAATTGAATTA--A--ATTGCATTTA-GGTGATTGTTTTA
* * * * * *
395526 TCCTTCACCATT-T----TC-CTT-ATA---T-CCAATCAACCACTAT-CAT---CACC-ACACT
394 T--TTTA--ATTGTAAAAACTCTTCATATGGTGCCTATCAA-CACTATAAATAGGCACCTCCACG
* * * * *** * * ** ** * *
395575 TC-TTT-TATTTACAA-TCCACTTCAACTTGATTATA-TCATTTCCATTACTTTCATACACATAT
454 ACATTTGTACTAAGAACT-TTTTTC-A--T-AATAAACTC-TTTGAAAGA-TTGCAT--TCAT-T
* *** ** * * **
395636 TTAAGTATACAT--ATT-TCCCTTCTTATAATGTTGT-TTGTAC-ATTTTCAGCCTTAAATCAAA
509 TT-AGT-T-CTTGGATTAGAAC-TC-TAT-CGGTT-TCTTGT-CGATCTT--G-ATT-CTTC-AA
* * * ** * ** ** * ** * * *** *
395696 GCACTGCGAAGTTCTTACTAGAATCAAGAT-CGGGCAATCATA-TATATGAT-CTGAAACT-CAT
561 CCATTTC-ATCTTGTTA-TAGCGT-TGGTTCCTAGC--TC-TACTATA-GCTAGTG-GGTTACGT
* ** * * *
395757 AATCGA-GATCATATCATTATTC-A-TCCAT-TTTCAATCTATATG--GG---C-AAC-CAT-TA
618 --TCCACCCTC-TATCA--CTTCGATTCCATCTTT-AGTATAT-TGTTGGTTTCTAACTCATATA
* ** *
395810 AAGGGTTAGAAGAATG
676 TA--GTTAG-AGGGTC
* * * * **** *** *
395826 AC-ATGTCAT-TTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTATTTGTAAAAACA-
1 ACAAT-CCATCCT--TTGAATT--A---C---TA--TCATTG-TCTACGCCA--ACCACAAACAT
* ** * * **
395888 -CTTCA-TATGTTGT-CTATCAACACTATAAAT-AGGAACATGTATGACATTTGTTCTAAGA-AC
50 CCTTCACCAT-TT-TCCT-T--ACA-T-CCAATCA--ACCA-CTAT--CA-----TC-ACCACAC
* * * * * * * **
395948 TTTTTTCATAATA-AA-CTC-TTTGAAAGATTGCATTCATTTTAGTTCTTAGATTAGAACTCTAT
97 TTCTTTCAT-TTACAATC-CACTT-CAA-CTT-CATTC-TATCA--T-TTCCATT---ACT-T-T
* * * * * * * * * * *
396010 CGGTTTCTTGTCGATCTTGAAGCT-TTCAACCATTTCATCTTATTATAGCGTTGGTTCCTAGCTC
148 C--ATAC---AC-ATATTTAA-ATATAC-A-TATTTC-CCTTCTTATAACGTT-GTT--T-G---
* ** ** * ** *
396074 TACCATAGCTAGTGTGTTACGT-TCTACCCTCCTATCACGTTATTTGTACATTTTCAGTCTTCAA
196 TA-C--A--T--T-T-TCA-GTCT-TA-AATCAAAGCAC----TGCG-A-A--GT---TCTT--A
* *** ** * *
396138 TCTAAGCACTGCAA-ATTTTCTTACAAGAATCAAGATCGGGCAATCATATATATGATCCAAAACA
236 -CT-AG-AAT-CAAGA--TT-GGGCAATCAT-A--------------T--ATATGATCCGAAACT
* * * *
396202 CATAATCGAGATCATATCTTTATTAATCCATTTTCAATCTGCATGGGCAACCA-TCAAAGTGTAA
277 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAAG-GTAA
* * **
396266 GAAGAATGACAAGTCATTTATTTGAATTAAATTTCATTTAGGACATTGTTTTATTTTAATTGTAA
341 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * * * *
396331 AATCTCTTTATATGGTGCCTATCAACACTATAAATTGGCACCTCCATGGCATTTGTACTAAGAAC
406 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAC
* * * * *
396396 TTTTTGCATAATAAACTCTCTGAAAGATTCCTTTCATTTTAATTCTTGGATTAGAACTCTATCGG
471 TTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGG
* * * * * ** *
396461 TTTCTTGTCGGTCTTGTGTTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTATTGGCTCTACT
536 TTTCTTGTCGATCTTG-ATTCTTCAACCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
* * * *
396526 ATAGCTAGTGGGTCACGTTCCACCCTCTATAACTTTGATTCCATCTTTAGTATATTGTTGATTTC
600 ATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
* *
396591 TAACTCATATATAGTTAGATGTTC
665 TAACTCATATATAGTTAGAGGGTC
* * * * * *
396615 ATAATCCATCCTCTAAAATACTATCATTGTCCATGCCAACCACAAACATCCTTCACCA-TTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
**
396679 TACATCCAATCAAAAACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * * * *
396744 ATCGTTTCTATTACTTTCGTATACATATTTAAATATATATATTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
*
396809 TACATTTTCAGTCTTAAATCAAAGCACTGTGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
*
396874 TATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* * *
396939 ACCATTAAAGGGTAAGAAGAATGACAACTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
*
397004 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACAAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
* * * *
397069 ATTTGTACTAAGAACTTCTTTCATAATAAACACTTTAAAATATTGCATTCATTTTAGTTCTTGGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
* * *
397134 TAAGAACTTTATCGGTTTCTTGTCGATCTTGAATCTTTCAACCATTTCATCTTGTTATAGCGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* * * * * *
397199 GTTCCTAGCTCTACTATACCAAGTGTGTTATGTTCCACCCTCTAACTCTTCGATTCCATCTTTAG
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
*
397264 TATATTGTTGGTTTCTGACTCATATATAGTTAGAGGGTC
650 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* ** *
397303 ACAATCCATCCTTTGAATTACTATCATTTTCTACGCTGACCAAAAACATCCTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * * *
397368 TATATCCAATCAACCACTATCATCACCACACTTCTTTTATTTACAATCCACTTCAACTTGATTAT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* *
397433 ATCATTTCCATTACTTTCATACACATATTTAAGTATACATATTTCCCTTCTTATAATGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
*
397498 TACATTTTCA-TCCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCAT
196 TACATTTTCAGT-CTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCAT
* *
397562 ATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTATATGGGC
260 ATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC
* * *
397627 AACCATTAAAGGGTTAGAAGAATGACATGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGT
325 AACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGT
* * * * * * ** *
397692 TTTATTTTATTTGTAAAAACACTTCATATGTTGTCTATCAACACTATAAATAGGAACATGTATGA
390 TTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGA
* *
397757 CATTTGTTCTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTAG
455 CATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGG
* * ** * * *
397822 ATTAGAACTCTTTTGGTTTCTTGTCGATCTTGAAGCTTTCATCCATTTCATCTTATTATAGTGTT
520 ATTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTT
* * * * *
397887 GGTTACTAGCTCTACTATAGCTAGTGTGTTACGTACCACCCTCTATCACATCGATTCCATATTTA
584 GGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTA
*
397952 GTATATTGTTGGTTCCTAACTCATATATAGTTAGAGGGTC
649 GTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * * * *
397992 ACAATCCATTCTTTGAA-TACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCGT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* * *
398056 TACATCTAATCAACTACTATCATCACCGCACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
*
398121 ATCATTTCCATTACTTTCGTACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * * *
398186 TACATTTTCAATCTTCAATCAAAGCACTGCGAATGTTCTTAATAGAATCAAGATCGGG-AAT--T
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATTGGGCAATCAT
*
398248 CATATAT-AT--G---------ATC----T--TA--A--A--C-T-CA---T-AA--T-CGTGGG
260 -ATATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* * * * **
398280 AAACCA-TCAAAGTGTAAGAAGAATGACAAGTCATTTAATT-AATTAAATTTCATTTTGGTCTTT
324 CAACCATTAAAAG-GTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * *
398343 GTTTTATTTTAATTGTAAAATCTCTTCATATGGTGCCTATCAACACTATAAACAGGCACCTCCAT
388 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAC
* * * * *
398408 GGCATTTGTACTAAGAAATTTTTTCATAATAAACTCTCTGAAAGATTGCTTTCATTTTAATTCTT
453 GACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTT
* * * * *
398473 GGATTAGAACTCTATCGGTTTCTTGTCGGTCTTGTATTCGTCATCCATTTCATATTGTTATAGCT
518 GGATTAGAACTCTATCGGTTTCTTGTCGATCTTG-ATTCTTCAACCATTTCATCTTGTTATAGCG
* * * * * *
398538 TTGGTTCAT-GTCTTTACTATAGCTAGCGGGTCACGTTCCACCCTCTATCACTTCGATTCCGTAT
582 TTGGTTCCTAG-CTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCT
*
398602 TTAGTATATTTTTGGTTTCTAACTCATATATAGTTAGAGGGTC
646 TTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* * **
398645 ACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACAACAAACATCCTTCAATATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
*
398710 TACATCCAATCAACCACTATCATCGCCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * * **
398775 ATCGTTTCCATTACTTTCATATACATATTTAAATATATATATTTCTATTCTTATAACGTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
398840 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
398905 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
** * *
398970 ATGATTAAAAGGTAAGAAGAATGACAAGTCATTGAGTTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
*
399035 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACAAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
* ** *
399100 ATTTGTACTAAGAACTTCTTTCATAATAAACTCTTAAAAATATTGCATTCATTTTAGTTCTTGGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
* * *
399165 TTAGAACTCTATCGGTTTCTTATCGATCTTGAATCTTTCATCCATTTCATCTTGTTATAGCGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* *
399230 GTTCCTAGCTCTACTATAGCAAGTGGGTTATGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAG
399295 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
650 TATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
* *
399334 ATAATCCATCCTTTGAATTACTATCATTGTCTACGCCGACCACAAACATCCTTCACCATTTTCCT
1 ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
* *
399399 TACATCCAATCAACCACTATCATCACCACACTTCTTTTATTTACAATCCACTTCAACTTGATTCT
66 TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
* * **
399464 ATCATTTCCATTACTTTAATACACATATTTAAGTATACATATTTCCCTTCTTATAATTTTGTTTG
131 ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
* * *
399529 TACATTTTCAGCCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAAACATA
196 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
* ** *
399594 TATGTGATCTAAAACTCATAATCGAGATCATATCATTATTCATCAATTTTCAATCTACATGGGCA
261 TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
* * *
399659 ACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
326 ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
* * * *
399724 TTATTTTAATTGTTAAAACTCTTCATATGTTGCCTATCAACACTATAAATAGGAACCTGCACGAC
391 TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
*
399789 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTAGA
456 ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
** *
399854 TTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTCAACCATTTCATCTTATTATAGCGTTG
521 TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTC-TTCAACCATTTCATCTTGTTATAGCGTTG
* * *
399919 GTTCCTAGCTCTACCATAGCTAGTGTGTTACGTTCTACCCTCTATCAC
585 GTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCAC
399967 GTTATTTGTA
Statistics
Matches: 10915, Mismatches: 1931, Indels: 2140
0.73 0.13 0.14
Matches are distributed among these distances:
630 4 0.00
631 20 0.00
632 27 0.00
633 3 0.00
634 10 0.00
635 46 0.00
636 116 0.01
637 51 0.00
638 5 0.00
639 33 0.00
640 76 0.01
641 41 0.00
642 9 0.00
643 14 0.00
644 14 0.00
645 54 0.00
646 21 0.00
647 11 0.00
649 11 0.00
650 5 0.00
651 18 0.00
652 76 0.01
653 350 0.03
654 314 0.03
655 90 0.01
656 41 0.00
657 27 0.00
658 27 0.00
660 11 0.00
661 17 0.00
662 10 0.00
663 14 0.00
664 9 0.00
665 10 0.00
666 13 0.00
667 11 0.00
668 38 0.00
669 53 0.00
670 187 0.02
671 120 0.01
672 77 0.01
673 236 0.02
674 244 0.02
675 130 0.01
676 53 0.00
677 154 0.01
678 229 0.02
679 207 0.02
680 217 0.02
681 65 0.01
682 107 0.01
683 95 0.01
684 608 0.06
685 113 0.01
686 8 0.00
687 18 0.00
688 797 0.07
689 3223 0.30
690 23 0.00
691 7 0.00
692 8 0.00
693 14 0.00
694 10 0.00
695 7 0.00
696 5 0.00
697 15 0.00
698 10 0.00
699 19 0.00
700 11 0.00
701 4 0.00
702 1 0.00
703 1 0.00
704 11 0.00
705 13 0.00
706 20 0.00
707 32 0.00
708 11 0.00
709 13 0.00
710 24 0.00
711 15 0.00
712 18 0.00
713 29 0.00
714 40 0.00
715 24 0.00
716 28 0.00
717 21 0.00
718 23 0.00
719 25 0.00
720 22 0.00
721 20 0.00
722 31 0.00
723 3 0.00
724 14 0.00
725 20 0.00
726 9 0.00
727 10 0.00
728 3 0.00
729 1 0.00
730 11 0.00
731 6 0.00
732 26 0.00
733 30 0.00
734 21 0.00
735 33 0.00
736 21 0.00
737 16 0.00
738 33 0.00
739 34 0.00
740 24 0.00
741 20 0.00
742 20 0.00
743 23 0.00
744 8 0.00
745 18 0.00
746 26 0.00
747 15 0.00
748 23 0.00
749 11 0.00
750 7 0.00
751 21 0.00
752 15 0.00
753 14 0.00
754 11 0.00
755 9 0.00
756 23 0.00
757 24 0.00
758 27 0.00
759 60 0.01
760 34 0.00
761 27 0.00
762 36 0.00
763 33 0.00
764 44 0.00
765 48 0.00
766 38 0.00
767 16 0.00
768 25 0.00
769 25 0.00
770 15 0.00
771 6 0.00
772 9 0.00
773 22 0.00
774 10 0.00
775 27 0.00
776 40 0.00
777 18 0.00
778 24 0.00
779 9 0.00
780 12 0.00
781 17 0.00
782 18 0.00
783 16 0.00
784 19 0.00
785 40 0.00
786 30 0.00
787 14 0.00
788 16 0.00
789 21 0.00
790 19 0.00
791 17 0.00
792 13 0.00
793 20 0.00
794 25 0.00
795 25 0.00
796 24 0.00
797 13 0.00
798 5 0.00
799 19 0.00
800 12 0.00
801 15 0.00
802 13 0.00
803 9 0.00
804 8 0.00
805 13 0.00
806 14 0.00
807 2 0.00
809 7 0.00
810 3 0.00
811 4 0.00
812 13 0.00
813 8 0.00
814 9 0.00
815 3 0.00
816 2 0.00
817 4 0.00
818 6 0.00
819 2 0.00
820 8 0.00
821 12 0.00
822 2 0.00
823 1 0.00
824 1 0.00
825 2 0.00
826 1 0.00
827 6 0.00
828 1 0.00
829 10 0.00
830 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (688 bp):
ACAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTTTCCT
TACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCT
ATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTG
TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATTGGGCAATCATA
TATATGATCCGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCA
ACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTT
TTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCACGAC
ATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCTTGGA
TTAGAACTCTATCGGTTTCTTGTCGATCTTGATTCTTCAACCATTTCATCTTGTTATAGCGTTGG
TTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGT
ATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTC
Found at i:400408 original size:447 final size:446
Alignment explanation
Indices: 399525--400410 Score: 1294
Period size: 447 Copynumber: 2.0 Consensus size: 446
399515 TATAATTTTG
* * *
399525 TTTGTACATTTTCAGCCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAAA
1 TTTGTACATTTTCAGCCTTAAATCAAAGCACTGCAAAGTTCTTACAAGAATCAAGATCAGGCAAA
* * * *
399590 CATATATGTGATCTAAAACTCATAATCGAGATCATATCATTATTCATCAATTTTCAATCTACATG
66 CATATATATGATCCAAAACACATAATCGAGATCATATCATTATTAATCAATTTTCAATCTACATG
* **
399655 GGCAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
131 GGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGACAT
* * *
399720 TGTTTTATTTTAATTGTTAAAACTCTTCATATGTTGCCTATCAACACTATAAATAGGAACCTGCA
196 TGTTTTATTTTAATTGTTAAAAATCTTCATATGGTGCCTATCAACACTATAAATAGGAACCTCCA
* * *
399785 CGACATTTGTACTAAGAACTTTTTTCATAATAAACTCTTTGAAAGATTGCATTCATTTTAGTTCT
261 CGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTGAAAGATTGCATTCATTTTAATTCT
399850 TAGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTCAACCATTTCATCTTATTATAGC
326 TAGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTCAACCATTTCATCTTATTATAGC
* * * *
399915 GTTGGTTCCTAGCTCTACCATAGCTAGTGTGTTACGTTCTACCCTCTATCACGTTA
391 GTTGGTTACTAGCTCTACCATAGCTAGTGGGTCACGTTCCACCCTCTATCACGTTA
* * *
399971 TTTGTACATTTTCAGTCTTCAATCTAAA-CACTGCAAATTTTCTTACAAGAATCAAGATCAGGCA
1 TTTGTACATTTTCAGCCTTAAATC-AAAGCACTGCAAA-GTTCTTACAAGAATCAAGATCAGGCA
* * * *
400035 ATCATATATATGATCCAAAACACATAATCGAGATCATATCTTTATTAATCCATTTTCAATCTGCA
64 AACATATATATGATCCAAAACACATAATCGAGATCATATCATTATTAATCAATTTTCAATCTACA
* * *
400100 TGGGCAACCATCAAAGTGTAAGAAGAATGACAAGTCATTTATTTGAATTAAATTTCATTTAGGAC
129 TGGGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGAC
* * *
400165 ATTGTTTTATTTTAATTG-TAAAATATCTTTATATGGTGCCTATCAACACTATAAATTGGCACCT
194 ATTGTTTTATTTTAATTGTTAAAA-ATCTTCATATGGTGCCTATCAACACTATAAATAGGAACCT
* * *
400229 CCATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTGAAAGATTGCTTTCATTTTAAT
258 CCACGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTGAAAGATTGCATTCATTTTAAT
* * * * *
400294 TCTTGGATTAGAACTCTATCGGTTTCTTGTCGGTCTTG-TG-TTCGTCATCCATTTCATCTTGTT
323 TCTTAGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTT--TCAACCATTTCATCTTATT
* * * *
400357 ATAGCTTTGGTTATTGGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTAT
386 ATAGCGTTGGTTACTAGCTCTACCATAGCTAGTGGGTCACGTTCCACCCTCTAT
400411 AACTTCGATT
Statistics
Matches: 390, Mismatches: 45, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
445 2 0.01
446 36 0.09
447 352 0.90
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (446 bp):
TTTGTACATTTTCAGCCTTAAATCAAAGCACTGCAAAGTTCTTACAAGAATCAAGATCAGGCAAA
CATATATATGATCCAAAACACATAATCGAGATCATATCATTATTAATCAATTTTCAATCTACATG
GGCAACCATCAAAGGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGACAT
TGTTTTATTTTAATTGTTAAAAATCTTCATATGGTGCCTATCAACACTATAAATAGGAACCTCCA
CGACATTTGTACTAAGAACTTTTTGCATAATAAACTCTCTGAAAGATTGCATTCATTTTAATTCT
TAGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAAGCTTTCAACCATTTCATCTTATTATAGC
GTTGGTTACTAGCTCTACCATAGCTAGTGGGTCACGTTCCACCCTCTATCACGTTA
Found at i:404004 original size:22 final size:22
Alignment explanation
Indices: 403978--404042 Score: 112
Period size: 22 Copynumber: 3.0 Consensus size: 22
403968 GAAAGTCAAC
403978 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
404000 TGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
404022 GGTCAACGGTCAGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
404043 AGACCGGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.11, C:0.23, G:0.46, T:0.20
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:404052 original size:19 final size:19
Alignment explanation
Indices: 404012--404071 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
404002 TCAACGGTCG
*
404012 GGTCGGGTCGGGTCA-A-C
1 GGTCAGGTCGGGTCAGACC
404029 GGTCAGGTCGGGTCAGACC
1 GGTCAGGTCGGGTCAGACC
***
404048 GGTCAAACCGGGTCAGACC
1 GGTCAGGTCGGGTCAGACC
404067 GGTCA
1 GGTCA
404072 AACCGGTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.38
18 1 0.03
19 22 0.59
ACGTcount: A:0.18, C:0.27, G:0.40, T:0.15
Consensus pattern (19 bp):
GGTCAGGTCGGGTCAGACC
Found at i:404072 original size:19 final size:19
Alignment explanation
Indices: 404037--404077 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
404027 ACGGTCAGGT
404037 CGGGTCAGACCGGTCAAAC
1 CGGGTCAGACCGGTCAAAC
404056 CGGGTCAGACCGGTCAAAC
1 CGGGTCAGACCGGTCAAAC
404075 CGG
1 CGG
404078 TTAAACCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.32, G:0.34, T:0.10
Consensus pattern (19 bp):
CGGGTCAGACCGGTCAAAC
Found at i:404088 original size:9 final size:9
Alignment explanation
Indices: 404039--404087 Score: 62
Period size: 9 Copynumber: 5.3 Consensus size: 9
404029 GGTCAGGTCG
*
404039 GGTCAGACC
1 GGTCAAACC
404048 GGTCAAACC
1 GGTCAAACC
*
404057 GGGTCAGACC
1 -GGTCAAACC
404067 GGTCAAACC
1 GGTCAAACC
*
404076 GGTTAAACC
1 GGTCAAACC
404085 GGT
1 GGT
404088 TTCCAGCAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
9 27 0.77
10 8 0.23
ACGTcount: A:0.27, C:0.29, G:0.31, T:0.14
Consensus pattern (9 bp):
GGTCAAACC
Found at i:413851 original size:677 final size:681
Alignment explanation
Indices: 412254--413967 Score: 2609
Period size: 677 Copynumber: 2.5 Consensus size: 681
412244 TATGAATTCG
* * * *
412254 TCATCCATTTCATCTTGTTATAGCTTTGGTCCCTAGCTCTACAATAGCTAGTGGGTCACATTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
*
412319 CGCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAAGG
66 CCCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAAGG
* * * *
412384 TCACAATCCAATCATTGAA-TACTATCATTCTCCACGTCAA-C-CAAA-ATCCTTCATCATTTTT
131 TCACAATCCATTCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTT
**
412445 GGTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATT
196 ATTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * * * * *
412510 CTATCATTTCCGTTACCTACATACAAATATTTAAATATTCATACTTCCCTTCTTATAAGGTTGTT
261 CTATCATTTCCATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
*
412575 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCTAGAAATCA
326 TGTACATTTTCAGTCTTAAATC-AA--A----GAA--TCTTACGAGAATCAAGATCTAGAAATCA
* * *
412640 TATATATGATCTGAAACTCATAATCGAGATCATTTCATTATTCATCCATTTTCAATCTACATGGG
382 TATATATGATCCGAAACTCATAAACGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* * *
412705 CAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG
447 CAACCATCAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATTG
* * *
412770 TTTTTTTTTAAATTGTAAAAACTCTTCATATGGTGCCTATTAACACAATAAATAGGCACCTCCAT
512 TTTTATTTTAAATTGTAAAAACTCTTCATATGGTGCCTATAAACACAATAAATAGGCACCTCCAC
* ** *
412835 GTCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTATT
577 GACATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAAAAATTGCATTCATTTTAGTTATT
412900 GGATTAAAACTCTATCAGTTTCTTGTAGGTCTTAAAGCCT
642 GGATTAAAACTCTATCAGTTTCTTGTAGGTCTTAAAGCCT
* **
412940 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTACAGCTAGTGGGTTTCGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * *
413005 CCCTCTATCACTTCGATTGCATCTTTAGTATATTGTTGGTTCCTAACCCATATATAGTTAGAAGG
66 CCCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAAGG
* *
413070 TCACAATCCATCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTT
* * * * *
413135 CTTACATCCAATCAACCACTATCATCACAACACTTCTTTCATTTACAATCCACGTCAACTTTATT
196 ATTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * * *
413200 CTATCATTTTCATTACTTTTATACACATATTTAAATATACATATTTCCCTTCTTATAACGCTGTT
261 CTATCATTTCCATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* *
413265 TGTACATTTTCTGTCTTCAATCAAAGAA-C-TACGAGAATCAAGATC-AGCAAATCATATATATG
326 TGTACATTTTCAGTCTTAAATCAAAGAATCTTACGAGAATCAAGATCTAG-AAATCATATATATG
* *
413327 ATCCGAAACTCATAAACGATATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATT
390 ATCCGAAACTCATAAACGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATC
413392 AAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATTGTTTTATTT
455 AAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATTGTTTTATTT
* *
413457 T-AATTGTAAAAACTCTTCATGTGGTGCCTATAAACACTATAAATAGGCACCTCCACGACATTTG
520 TAAATTGTAAAAACTCTTCATATGGTGCCTATAAACACAATAAATAGGCACCTCCACGACATTTG
* * * *
413521 TACTAAGACCTTTTTTCATAATAAACTCTTTGAAAAATTGCATTCATTTTAGTTCTTGGATTAGA
585 TACTAAGAACTTTTTGCATAATAAACTCTTTGAAAAATTGCATTCATTTTAGTTATTGGATTAAA
* *
413586 ACTCTATCGGTTTCTTGTAGGTCTTGAAGCCT
650 ACTCTATCAGTTTCTTGTAGGTCTTAAAGCCT
*
413618 TCATCCATATCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* ** * * **
413682 CCCTTTATCACTTCAATTCCATCTTTAAAATATTGTTGGTTTCTAACTCATATATAATTAGGGGG
66 CCCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAAGG
* * *
413747 TAACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCTTTCACCATTTTT
131 TCACAATCCATTCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTT
* *
413812 ATTACATCCAATCAACCACTATCATTACCATACTTCTTTCATTTACAATCCACTTGAACTTCATT
196 ATTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATT
*
413877 CTATCATTTCCATTACTTTCATACAAATATTTAGATATACATATTTCCCTTCTTATAACGTTGTT
261 CTATCATTTCCATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
413942 TGTACATTTTCAGTCTTAAATCAAAG
326 TGTACATTTTCAGTCTTAAATCAAAG
413968 CACTGTGAAG
Statistics
Matches: 931, Mismatches: 92, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
677 285 0.31
678 180 0.19
679 151 0.16
680 1 0.00
683 3 0.00
686 135 0.15
687 21 0.02
688 1 0.00
689 6 0.01
690 148 0.16
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (681 bp):
TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
CCCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAAGG
TCACAATCCATTCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTT
ATTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATT
CTATCATTTCCATTACTTTCATACAAATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
TGTACATTTTCAGTCTTAAATCAAAGAATCTTACGAGAATCAAGATCTAGAAATCATATATATGA
TCCGAAACTCATAAACGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCA
AAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATTGTTTTATTTT
AAATTGTAAAAACTCTTCATATGGTGCCTATAAACACAATAAATAGGCACCTCCACGACATTTGT
ACTAAGAACTTTTTGCATAATAAACTCTTTGAAAAATTGCATTCATTTTAGTTATTGGATTAAAA
CTCTATCAGTTTCTTGTAGGTCTTAAAGCCT
Done.