Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000499.1 Hibiscus syriacus cultivar Beakdansim tig00000951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 585273
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
File 2 of 2
Found at i:416154 original size:310 final size:310
Alignment explanation
Indices: 415586--416198 Score: 944
Period size: 310 Copynumber: 2.0 Consensus size: 310
415576 CTTGAAGCTT
* * * * * *
415586 TCATCTATTTCATCTTATTATAGCATTTGTTACTAGCTCTACTATAGCTAGTGTGTTACGTACCA
1 TCATCCATTTCATCTTATTATAGCATTTGTCACTAGCTCTACAATAGCTAGTGGGTCACATACCA
415651 CCCTCTATCACATCGATTCCATATTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAAAGGG
66 CCCTCTATCACATCGATTCCATATTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAAAGGG
*
415716 TCACAATCCATCCTTCGAATACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCG
131 TCACAATCCATCATTCGAATACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCG
*
415781 TTAAATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTC
196 TTAAACCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTC
* **
415846 TATCATTTCCATTACTTTTATACACATATTTAAATATACATATGAATTCG
261 TATCATTTCCATTACCTACATACACATATTTAAATATACATATGAATTCG
* * *
415896 TCATCCATTTCATCTTGTTATAGC-TTTGGTCCCTAGCTCTACAATAGCTAGTGGGTCACATTCC
1 TCATCCATTTCATCTTATTATAGCATTT-GTCACTAGCTCTACAATAGCTAGTGGGTCACATACC
* * * *
415960 ACGCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAA-
65 ACCCTCTATCACATCGATTCCATATTTAGTATATTGTTGGTTCCTAACTCATATATAGTTA-AAG
* *
416024 GGTCACAATCCAATCATT-GAATACTATCATTCTCCATGTCAACCACAAACATCCTTCATCATTT
129 GGTCACAATCC-ATCATTCGAATACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTT
* * *
416088 TTGTTACACCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCA
193 TCGTTAAACCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCA
* * *
416153 TTCTATCATTTCCGTTACCTACATACAGATATTTAAATATTCATAT
258 TTCTATCATTTCCATTACCTACATACACATATTTAAATATACATAT
416199 TTCCCTTCTT
Statistics
Matches: 274, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
309 3 0.01
310 264 0.96
311 7 0.03
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (310 bp):
TCATCCATTTCATCTTATTATAGCATTTGTCACTAGCTCTACAATAGCTAGTGGGTCACATACCA
CCCTCTATCACATCGATTCCATATTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAAAGGG
TCACAATCCATCATTCGAATACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCG
TTAAACCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTC
TATCATTTCCATTACCTACATACACATATTTAAATATACATATGAATTCG
Found at i:418141 original size:689 final size:689
Alignment explanation
Indices: 415896--425743 Score: 14146
Period size: 688 Copynumber: 14.3 Consensus size: 689
415886 TATGAATTCG
* * * *
415896 TCATCCATTTCATCTTGTTATAGCTTTGGTCCCTAGCTCTACAATAGCTAGTGGGTCACATTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * * *
415961 CGCTTTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTCCTAACTCATATATAGTTAGAAGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * * * * * *
416026 TCACAATCCAATCATTGAA-TACTATCATTCTCCATGTCAACCACAAACATCCTTCATCATTTTT
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * *
416090 GTTACACCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * * * * *
416155 CTATCATTTCCGTTACCTACATACAGATATTTAAATATTCATATTTCCCTTCTTATAAGGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
** *
416220 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCTAGAAATCA
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCA
*
416285 TATATATGATCTGAAACTCATAATCGAGATCATTTCATTATTCATCCATTTTCAATCTACATGGG
391 TATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* *
416350 CAACCATCAAAGGGTTAGAAGAATGACAAGTCATTTAATTGAATCAAATTGCATTTAGGTGATTG
456 CAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG
* *
416415 TTTT-TTTTAAATTGTAAAAACTCTTCATATGGTGCCTATTAACACAATAAATAGGCACCTCCAT
521 TTTTATTTT-AATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
*
416479 GTCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTT
585 GGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTT
* *
416544 GGATTAAAACTCTATCGGTTTCTTGTAGGTCTTAAAGCCT
650 GGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* **
416584 TCATCCATTTCATCTTGTTATAGCGTTGATTCCTAGCTCTACTATAGCTAGTGGGTTTCGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * * * *
416649 CCCTCTATCACTTCGATTGCATCTTTTGTATATTGTTGGTTCCTAACCCATATATAGTTAGAAGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * *
416714 TCACAATCCAATCATTGAA-TACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * * *
416778 ATTACATCCAATCAACCACTATCATCACCACACTTCTTTCATATAGAATCGACTTCAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* *
416843 CTATCATTTTCATTACTTTCATACACATTTTTAAATATACATATTTCCCTTCTTATAACGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * *
416908 TGTACATTTTCAATCTTCAATCAAAGCACTGCGAAGTTCTTACTAGAATTAAGATCGGGCAATCA
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCA
* ** * * * *
416973 TATATATAATCCAAAACTCACAATCTAGATCATATCATTATTCATCCATATTAAATCTACATGGG
391 TATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* * * *
417038 CAACCATC-AAAGTGTAAGAAGAATGAAAAGTCATTCAATTG-ATATAAATTGCA-TTAAGTGAT
456 CAACCATCAAAAG-GTTAGAAGAATGACAAGTCATTTAATTGAAT-TAAATTGCATTTAGGTGAT
** *** *
417100 CATTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCATAACCG
519 TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
* * *
417165 TGGCATTTGTACTAAGAACATTTTT-CATAATAAACTCTATGAATGATTGCTTTAATTTTAGTTC
584 TGGCATTTGTACTAAGAAC-TTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTC
* * * * *
417229 TTGGATTAGAACTCTATCGGTTTCTTGTCGATCTTGAATTCG
648 TTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * * *
417271 TCATCCATTTCATATTCTTATAG-GTCTGGTTCCTATCTCTATTATAGCTAGTGGGTCACGTTCC
1 TCATCCATTTCATCTTGTTATAGCGT-TGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCC
* *
417335 ACCCTCTATCATTTCGATTTCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
65 ACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
* * *
417400 GTCACAATCCATCCTTAGAATTACTATCATTG-CCTATGCCAACCACAAACATCCTTCACCATTT
130 GTCACAATCCATTCTTTGAATTACTATCATTGTCC-ACGCCAACCACAAACATCCTTCACCATTT
*
417464 TCCTTACATCCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCA
194 TCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCA
** *
417529 TTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAAAATTT
259 TTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTG
* * *
417594 TTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCACGATCGGGGAAT
324 TTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAAT
* * * * *
417659 CATATATATGATCTGAAAGTCATAATCAAGATGATGTCATTATTCATCCATTTTAAATCTACATG
389 CATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATG
* *
417724 GGAAACCATCAAAAGGTTAGAAGAATGAAAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
454 GGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
* * * *
417789 TGTTTTATTTTAATTGTAAAAACGCTTCATATGGTTG-TTATAAACACTATAAATAGGCACCTAC
519 TGTTTTATTTTAATTGTAAAAACTCTTCATATGG-TGCCTATCAACACTATAAATAGGCACCTCC
* *
417853 ATGGCATTTATACTAAGAACTTTTTGCGTAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTC
583 ATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTC
* *
417918 TTGGATTAGAACTCTATCGATTTCTTGTAGGTCTTGAAGTCT
648 TTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * * *
417960 TCATCTATTTCATCGTGTTATAGCATTGGTTCCTAGATCTACTATAGCTAGTGGGTCACGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * *
418025 CCCTCCATCACTTCGATTCCATCTTTAGTATATTGTTGATTTCTAACTCATATATAGTTAAAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * *
418090 TCATAATCCATTCTTTGAATTACTATCATTGTCCTCGCCAACCACAAACATCCTTTACCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * * * *
418155 CTTATATCCAATCAACCACTATAATCACAACACTT-TTGCATTTACAATCCACTTGAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* *
418219 CTATCATTTCCATTACTTTCATACACGTATTTAAATATACATATTTCCCTTCTTATAATGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * * * *
418284 TGTACATTTCCAGTCTTCAATCAAAGCACTGCGAATTTTCTTACTAGCATCAAGATCGGACAATC
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATC
** *
418349 ATATATATGATCCAAAACTCATAATCGAGATCATATCATTATTAATCCATTTTCAATCTACATGG
390 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * * * *
418414 GAAACCATC-AAAGTGTAAGAAGAATGAAAAGTCATTTAATTGAATTAAATTTCATTTAGGTCAT
455 GCAACCATCAAAAG-GTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
*
418478 TGATTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
519 TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
* * * * ** *
418543 TGGCATTTGTAATTAGACCTTTTTGCATAATAAACTCTCTGAAAGATTGCTTTCATTTTAGTTAT
584 TGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCT
* * * * *
418608 TGGATTTAAACTCTATCGGTTTCATGTCGGTCTTGAATTCG
649 TGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * *
418649 TCATCCATTTCATCTTGTTATAGCTTTGGTCCCTAGCTCTACAATAGCTAGTGGGTCACGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * * *
418714 CCCTTTATCACTTCGATTCCATCTTTAGTATATTTTTGGTTCCTAACTCATATATAGTTAGAAGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * * * * *
418779 TCACAATCCAATCATTGAA-TACTATCATTCTCCACGTCAACCACACACATCCTTCATCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * * *
418843 GTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTACAATTTAATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * * *
418908 CTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTACCTTCTTATAAAGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
*
418973 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATAGGGCAATCA
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCA
* *
419038 TATATATGATCCGAAACTCATAATTGAGATCATATCATTATTCATCCAATTTT-AATCTACATGG
391 TATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCC-ATTTTCAATCTACATGG
* * * *
419102 GAAACCATCAAAGGGTTAGAAGAATGATAAGTGATTTAATTGAATTAAATTGCATTTAGGTGATT
455 GCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * ** * *
419167 CTTTTATTTTAATTATAAAAA-TGCTTCATATGGTGGTTATGAACACTATAAATAGGCACCTACA
520 GTTTTATTTTAATTGTAAAAACT-CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
* * *
419231 TGGCATTTGTACTTAGAACTTTTTCCATAATAAACTCTTTGAATTATTGCTTTCGTTTTAGTTCT
584 TGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCT
419296 TGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAA-TCCT
649 TGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGT-CT
* **
419337 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGCTAGTGGGTTTCGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * **
419402 CCCTCTATCACTTCAATTGCATCTTTAGTATATTGTTGGTTTCTCTCTCATATATAGTTAGAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* *
419467 -CACAATCCATTCTTTGAATTACTATCATTGTCCACGCTAACCACAAACATCCTTCACCATTTTT
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * * *
419531 CTTACATCTAATCAACCACTATCATCATCACACTTCTTTCATTTACTATCCACTTGAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * *
419596 CTATCATTTCCATTAATTTCATACACATATTTAAATATACATATTTCCCTTCTTATATCGTTTTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * * *
419661 TGTACATTTCCAGTCTTCAATCAAAGCACTGCGAATTTTCTTACTAGAATCAAGATCAGGCAATC
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATC
** * * *
419726 ATATATATGATCAAAAACTCATAA-CCAGATCATGTCATTATT-AACCATTTTCAATCTACATGG
390 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * * * * ** *
419789 ACAACCATC-AAAGTGTAAGAAGAATGAAAAGTAATTTAATTAAATTAAATTTAATTTAGGTCAT
455 GCAACCATCAAAAG-GTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
* *
419853 TGATTTATTTTAATTGTAATAAA-TCTTCATATGATGCCTATCAACACTATAAATAGGCACCTCC
519 TGTTTTATTTTAATTGTAA-AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCC
* * *
419917 ATGGCATTTGTACTAAGACCTTTTTGCATAATAAACTCTTTGAATTATTTCTTTCATTTTAGTTT
583 ATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTC
* * *
419982 TTGGATTAAAACTCTATCGGTTTCTTGTTGGTCTTGAATTCG
648 TTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * * * *
420024 TCATCCATTTCATCTTGTTATAGCTTTGGTTCTTAGCTTTGCAATAGCTAGTGTGGGTCACGTTC
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTA--GTGGGTCACGTTC
* * * * *
420089 CACCCTCTGTCACTTCAATTCTATCTTTAATACATTGTTGGTTTCTAACTCATATATAGTTAGAG
64 CACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAG
* *
420154 GGTCACAATCCATCCTTTGAATTATTATCATTGTCCACGCCAACCACAAACATTCC-TCACCATT
129 GGTCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACA-TCCTTCACCATT
* *
420218 TTCCTTACATCCAATCAACCACTATTATCACCACACTTCTTTCATTTATAATCCACTTCAACTTC
193 TTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTC
* *
420283 ATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATATCGTT
258 ATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTT
* * * * *
420348 GTTTGTAGATTTTCAGACTTAAATCAAAGCACTGCGAATTTCTTAATAGAATCAAGATTGGGCAA
323 GTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAA
*
420413 TCATATATATGATCTGAAACTCATAATCGAGATCATATCTTTATTCATCCATTTTCAATCTACAT
388 TCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACAT
* *
420478 GGGTAACTATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGA
453 GGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGA
* * * ***
420543 TTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGTCTATTAACACTATAAATAAGCACCAAA
518 TTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCC
* *
420608 ATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTA
583 ATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTC
* * * *
420673 TTGGATTATAACTCTATCGGTTTCTTATAAGTCTTGAAGGCT
648 TTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* *
420715 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGCTAGTGGGTCACGTTCTA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* *
420780 CCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
*
420845 -CACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACTATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * *
420909 CTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* *
420974 CTAT-TTTTCCATTACTTTCATAAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * * * *
421038 TGTACATTTCCAGTCTTCAATCAAAACACTGCGAATTTTCTTACTAGAATCAAGATCGGACAATC
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATC
** * *
421103 ATATATATGATCCAAAACTCATAATCGATATCATATCATTATT-AACCATTTTCAATCTACATGG
390 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
*
421167 GCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTTAATTAAATTGCATTTAGGTGATT
455 GCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * * **
421232 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGTCTATTAACACTATAAATAGACACCTAAAT
520 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
* * * *
421297 GGCATTTGTACTATGAACTTTTTTCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTATT
585 GGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTT
* * * *
421362 GGATTATAACTCTATCGGTTTCTTATAAGTCTTGAAGGCT
650 GGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* *
421402 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGCTAGTGGGTCATGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * *
421467 CCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGAG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* *
421532 -CATAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACTATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * *
421596 CTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * *
421661 CTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * * * **
421726 TGTACATTTACAGTCTTCAATCAAAGCACTGCGAATTTTTTTACTAGAATCAAGATCGGTAAATC
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATC
* *
421791 ATATATATGATCTGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGG
390 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * * * * * * *
421856 GCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAAAT-AATTGTAATTAGGTGTTT
455 GCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* *
421920 GTTTTATTTTAATTGTAAAAACTCTTCTTGTGGT-CCTATCAACACTATAAATAGGCACCTCCAT
520 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
* * * * ** * *
421984 GACATTTGTACTAAGAAATTTTTTCATAAGAAACTCTTTGAAAAATTACATTCATTTTAGTTCTT
585 GGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTT
* * * *
422049 GGATTAAAACTCTATCGGTTTCTTGTCGATCTTGAATTCG
650 GGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * *
422089 TCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGGTCACATTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
422154 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * * * *
422219 TCATAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTCTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
*
422284 CTTACATCCAATCAACCACTATCATCACCACATTTCTTTCATTTACAATCCACTTCAACTTCATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
*
422349 CTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * * *
422414 TGTACATTTTCAGTCTTAAATCAAAGTACTGCGAAGTTCTGAATAGAATCAAGATTGGGCAATCA
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCA
422479 TATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
391 TATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
* * *
422544 TAACCATCAAAAGGTTAGAAGAATGACATGTCATTTAATTGAATTAAAATGCATTTAGGTGATTG
456 CAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG
* *
422609 TTATATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAGCACTATAAATAGGCACCTCCATG
521 TTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATG
** *
422674 GCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAAAAATTGTTTTCATTTTAGTTCTTG
586 GCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTG
* * * * *
422739 GATTAGAACTGTATCGG-TACTTGTAGGTCTTTAAGCCT
651 GATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * *
422777 TCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAGCTTTACTATAGCTAGTGGGTCATGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
** * * * * ***
422842 CCCTCTATCACTTATATTCCCTCTTTAGTATATTATTGGTTCCTTACTCATATATAGTTAGACAT
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
** *
422907 TCACAATCCACCCTTTG-ATATACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTT
131 TCACAATCCATTCTTTGAAT-TACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTT
* * * *** * * **
422971 CGTTACATCCAATCAATCACTATCATCAGCATTGTTCTTTCATTCACAATCCACGTCAACTTTGT
195 CCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCAT
* * * *
423036 TTTCTCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGT
260 TCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGT
* * * **
423101 TTGTATATTTTCAGTCTTCAATCAAAGCACTGCG-AG--------AG--TCAACATCGGTAAATC
325 TTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATC
* * * *
423155 ATATATATGATCCGAAACTCATAACCGAGGTCGTATCATTATTCATCCATTTTCAATCTACATGG
390 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* * * * * * *
423220 GCAACCATTAAAGGGTAAGAAGATTGACAAGTCATTGAATTGAATTAAATTGAAATTAGGTGATT
455 GCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * *
423285 GTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCAC
520 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
* * * ** * *
423350 GACATTTGTACTAAGAACTTTTTTCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTTTT
585 GGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTT
* *
423415 GGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCT
650 GGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * *
423455 TCATCCATATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTGGGTCACGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
*
423519 CCCTCGATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * *
423584 TCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTTACCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * * *
423649 GTTACATCAAATCAACAACTATCATCACCATACTTCATTT-ATTTACAATCCACTTCAACTTCAT
196 CTTACATCCAATCAACCACTATCATCACCACACTTC-TTTCATTTACAATCCACTTCAACTTCAT
* * * *
423713 TCAATCATTTCCATTACCTAT-ATACACATATTTAAATGTACATATTTCCCTTCTTATAACGGTG
260 TCTATCATTTCCATTA-CTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTG
* * *
423777 TTTGTACATTTTCAGTCTTAAATCAAAGCAATGTGAAGTTCTTACTAGAATCAAGATCGGACAAT
324 TTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAAT
*
423842 CATATATATGATCTGAAACTCATAATTGAGATCATATCATTATTCATCCATTTTCAATCTACATG
389 CATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATG
* * * *
423907 GGCAACCATTAAAAGGTTAGAAGAAAGACAATTCATTTAATTGAATTAAATTACATTTAGGTGAT
454 GGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
* *
423972 TGTTTTATTTTAATTGT-AAAACTCTTCATATGGTGCCTATGAACACTATAAATAGACACCTCCA
519 TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
* *
424036 TGGCATTTGTACTAAGACCTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCAGTTTAGTTCT
584 TGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCT
* * * *
424101 TGGATTAAAACTCTATCGGTTTCTTGTCGGTCTCGAATTCG
649 TGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * *
424142 TCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTC-ATCAATATCTAGTGGGTCACGTTCC
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTA-CTATAGCTAGTGGGTCACGTTCC
* * *
424206 ACACTCTGTCACTTCGATTCCTTCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
65 ACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGG
* *
424271 GTCATAATCCA-TCGTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCTTCACCATTT
130 GTCACAATCCATTC-TTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTT
* * * *
424335 TCGTTACATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCACTTCAACTTCA
194 TCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCA
* *
424400 TTCTATCATTTCCATTACTTT-ATACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTG
259 TTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTG
* * * * *
424464 TTTGTAGATTTTCAGTCTTAAATCAAAGCAGTGCGAATTTCTTAATAGAATCAAGATTGGGCAAT
324 TTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAAT
*
424529 CATATATATGATCTGAAACTAATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATG
389 CATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATG
* * ** *
424594 AGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAACCGAATTAAATTACATTTAGGTGAT
454 GGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGAT
* *
424659 TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGTCTATCAACACTATAAATAGGCACCTACA
519 TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCA
* * *
424724 TGGCATTTGTACTAAGAAATTTTTGCATAATAAACTCTTTGAATTTTTGCTTTCATTTTAGTTAT
584 TGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCT
* * * *
424789 TGGATTAGAACTCTATCGGTTTCTTATAGGTCCTGAAGGCT
649 TGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* * * *
424830 TCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGGTAACGTTTCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
* * *
424895 CCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCCAACTCATATATAGTTAGAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* *
424960 -CACAATCCAATCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
* * * * * *
425024 CGTACATTCAATCAACCACAATTATCACCACACTTCTTTCATTTACAATCCACTTGAACTTAATT
196 CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
* * * * *
425089 CTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCATTCTTATAACATTGTT
261 CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
* * * * * * **
425154 TGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTTTTTTACTATAATCAAGATCGGTAAATC
326 TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATC
** * *
425219 ATATATATGATCCAAAACTCATAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGG
390 ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGG
* ** * * *
425284 GCAACCATTAATGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATT
455 GCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATT
* * *
425349 GTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCAC
520 GTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
* * * ** *
425414 GACATTTGTACT-A-AACATTTTTTCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTCT
585 GGCATTTGTACTAAGAAC-TTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCT
* * * *
425477 TGGATTAAAACTCTATCGGTTTCTTGTCGGTCTTTAATTCA
649 TGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
* *
425518 TCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGGTCACGTTCCA
1 TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
425583 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
66 CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
* * *
425648 TCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTC
131 TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
*
425713 CTTACATCCAATCAACCACTATCATTACCAC
196 CTTACATCCAATCAACCACTATCATCACCAC
425744 TGTTGTGATC
Statistics
Matches: 8212, Mismatches: 878, Indels: 139
0.89 0.10 0.02
Matches are distributed among these distances:
677 537 0.07
678 60 0.01
679 2 0.00
686 12 0.00
687 2058 0.25
688 3444 0.42
689 1600 0.19
690 231 0.03
691 264 0.03
692 4 0.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.38
Consensus pattern (689 bp):
TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCA
CCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGG
TCACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTC
CTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATT
CTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTT
TGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCA
TATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGG
CAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG
TTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATG
GCATTTGTACTAAGAACTTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTG
GATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAAGTCT
Found at i:427514 original size:8 final size:8
Alignment explanation
Indices: 427486--427525 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
427476 TTGGAGTGCA
427486 AAAAGAAAG
1 AAAAG-AAG
427495 AAAAGACA-
1 AAAAGA-AG
427503 AAAAGAAG
1 AAAAGAAG
427511 AAAAGAAG
1 AAAAGAAG
427519 AAAAGAA
1 AAAAGAA
427526 AAGAAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 1 0.03
8 22 0.76
9 6 0.21
ACGTcount: A:0.78, C:0.03, G:0.20, T:0.00
Consensus pattern (8 bp):
AAAAGAAG
Found at i:438108 original size:688 final size:689
Alignment explanation
Indices: 431963--445341 Score: 19533
Period size: 688 Copynumber: 19.5 Consensus size: 689
431953 TTTCGCCTTA
431963 CATCAACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCA
1 CATC-ACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCA
* * *
432028 TACACATAATTAAATATACATATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTAAAAT
65 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAAT
* * * *
432093 CAAAGCACAGTGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATATGATATGAAACTCAT
130 CAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCAT
* * *
432158 AATCGAGATCATATCATTATTCATCCATTTTAAATCTACATGGACAACCATC-AAAGTGTAAGAA
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAG-GTTAGAA
* * * * *
432222 GAATGAAAAGTCATTTAATTAAATTAAATTTCATTTAGGTCATTGATTTATTTTAATTGTAATAA
259 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA-AA
* * *
432287 A-TCTTCATATGATGCCTATCAACACTATAAATAGGCACCTTCATGGCATTTGTACTAAGACCTT
323 ACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTT
* *
432351 TTTGCATAATAAACTCTTTGAATTATTGATTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTT
388 TTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTT
* * ** * * * * *
432416 TCTTGTTGGTTTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCTTAGCTCTGCAAT
453 TCTTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTAT
*
432481 AGCTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
518 AGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
*
432546 ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTATTATCATTGTCCACGCCAACCAC
583 ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
*
432611 AAACATTCTTCACCATTTTCCTTACATCCAATCAACCACTAT
648 AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* *
432653 CATCACCACACTTCTTTCATTTATAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
432718 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTAGATTTTCAGACTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
432783 AAAGAACTGCGAATTTCTTAATAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* * *
432848 ATCGAGATCATATCTTTATTCATCCATTTTCAATCTACAT-GGCTAACTATCAAAAGTTTAGAAG
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC-AACCATCAAAAGGTTAGAAG
432912 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
** * **
432977 TCTTCATATGGTTTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* *
433042 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * * *
433107 TTATAAGTCTTGAAGGCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAG
455 TTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* * * *
433172 CTAGTGGGTCACATTCCACCTTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* *
433237 TCATATATAGTTAGAGGG-CACAATCCATTCTTTGAATTACTATCATTGTCAACGCCAACCACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
433301 ACATCCTTCACTATTTTCCTTACATTCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
433341 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTAT-TTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
433405 AAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTCCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * **
433470 AAAGCACTGCGAATTTTCTTACTAGAATCAAGATCAGACAATCATATATATGATCCAAAACTCAT
131 AAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCAT
* * *
433535 AATCGATATCATATCATTATT-AACCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
*
433599 AATGACAAGTCATTTAATTGAATTAAATTGTATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* **
433664 TCTTCATATGGTGTCTATCAACACTATAAATAGGCACCAACATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* *
433729 TGCATAATAAACTCTTTAAATTATTGCTTTCATTTTAGTTCTTAGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * *
433794 TTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAG
455 TTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
433859 CTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * * * *
433924 TCATATATAGTTAGAGGG-CACAATCCGTTCGTTGAATTACTATCATTGTCAACGCCCACCACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
433988 ACATCCTTCACCATTTTTCTTACATTCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * *
434028 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTAAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
434093 AAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTCCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * ** *
434158 AAAGCACTGCGAATTTTTTTACTAGAATCAAGATCGGTAAATCATATATATGATCCGAAACTCAT
131 AAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCAT
* * * * *
434223 AACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
* *
434288 AATGACAAGTC-TTTGAATTGAATTAAATTGTAATTAGGTGATTGTTTTATTTTAATTGTAAAAA
260 AATGACAAGTCATTT-AATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
* * * * * * *
434352 CTCTTCTTGTGGTGCCTATAAACACTATAAATAGGAACCTCCACGACATTTGTACTAAGAATTTT
324 CTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTT
* * ** * * *
434417 TTTCATAAGAAACTCTTTGAAAAATTACATTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTT
389 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTT
* * ** * * *
434482 CTTGTCGATCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATA
454 CTTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
* * *
434547 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCAATCCCATCTTTAGTATATTATTGGTTTCTAA
519 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAA
* *
434612 CTCATATATAGTTAGAGGGTCATAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACA
584 CTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACA
* *
434677 AACATCCTTAACCATTTTCCTTACATCCAATCAACAACTAT
649 AACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
434718 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
434783 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTACAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * ** *
434848 AAAGCACTACGAATTTTTTTACTATAATCAAGATCGGTAAATCATATATATGATCCGAAACTCAT
131 AAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCAT
* * * *
434913 AACCAAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
*
434978 AATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* **
435043 TCTTCATATGGTGTCTATCAACACTATAAATAGGCACCAACATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* *
435108 TGCATAACAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATTGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * *
435173 TTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAG
455 TTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
435238 CTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * * *
435303 TCATATATAGTTAGAGGG-CACAATCCGTTCGTTGAATTACTATCATTGTCCACGCCAACTACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
435367 ACATCCTTCACCATTTTTCTTACATTCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
435407 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
435471 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * *
435536 AAAGCACTGGGAATTTCTTAATAGAATCAAGAT-GGGCAATAATATATATCATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* * * *
435600 ATCGAGATCATATCTTTATTCATCCATTTTCAATCTACATGGGTAACTATCAAAAGTTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
435665 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * **
435730 CTTCATATGGTGTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * *
435795 GCATAATAAACTCTTTGAATTATTTCTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * *
435860 TATAAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGC
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* *
435925 TAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACT
521 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*
435990 CATATATAGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAA
586 CATATATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
*
436053 ACATCCTTCACCATTTTCCTTACATTCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * *
436093 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTAATTCTATTATTTCCATTACCTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
436158 AAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTACAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * * ** *
436223 AAAGCACTGCAAATTTTTTTTTCTATAATCAAGATCGGTAAATCATATATATGATCCGAAACTCA
131 AAAGCACTGCGAA--GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCA
* * *
436288 TAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAA
194 TAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAA
*
436353 GAATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
259 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
* *
436418 CTCTTCATATGGTGCCTATCAACTCTATAATTAGGCACCTCCATGGCATTTGTACTAAGAACTTT
324 CTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTT
* ** * * * * *
436483 TTGCATAAAAAACTCTTTGAAAGATTTCTTTCATTTTAATTCTTGGATTAGAACTGTATCAG-TA
389 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTT
* *
436547 CTTGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
454 CTTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
* * * * *
436612 GCTAGTGGGTCATGTTCCACCCTCTATCACTTCTATTCCCTCTTTAGTATATTATTGGTTCCTAA
519 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAA
*** * * *
436677 CTCATATATAGTTAGACATTCACAATCCACCCTTTG-ATATGCTATCATTCTCCACGCCAACCAC
584 CTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCAC
*
436741 AAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTAT
648 AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * ** * * *
436783 CATCAGCATAGTTCTTTCATTTACAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * * * *
436848 ACACATATTTAAATATATATATTTCTCTTCTTATAATGTTGCTTGTATATTTTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * ** *
436913 AAAGCAATGCG-AG--------AG--TCAACATCGGTAAATCATATATATGATCCGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* * * * * *
436967 ACCGAGGTCGTATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* * * *
437032 ATGACAAGCCATTGAATTGAATTAAATTGTAATTAGGTGATTGTTTTTATTTTAATTGTAAAAAC
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG-TTTTATTTTAATTGTAAAAAC
* * * * ** * *
437097 TCTTCTTGTGGTGCCTATCAACACTATAAATAGGAACCTCCACGATATTTGTTCTAAGAATTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* * ** * * *
437162 TTCATAAGAAACTCTTTGAAAAATTACATTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * ** * * *
437227 TTGTCGATCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAG
455 TTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
*
437292 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * *
437357 TCATATATTGTTAGAGGGTCATAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
437422 ACATCCTTAACCATTTTCCTTACATCCAATCAACAACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
*
437462 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
*
437527 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTTTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * *
437592 AAAGTACTGCGAAGTTCTTAATAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
*
437657 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
437722 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* *
437787 CTTCATATGGTGCCTATCAACTCTATAATTAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* ** * * * * *
437852 GCATAAAAAACTCTTTGAAAGATTTCTTTCATTTTAATTCTTGGATTAGAACTGTATCAG-TACT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* *
437916 TGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * * * *
437981 TAGTGGGTCATGTTCCACCCTCTATCACTTCTATTCCCTCTTTAGTATATTATTGGTTCCTAACT
521 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*** * * *
438046 CATATATAGTTAGACATTCACAATCCACCCTTTG-ATATGCTATCATTCTCCACGCCAACCACAA
586 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCACAA
*
438110 ACATCCTTCACCATTTTCGTTACATCCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * ** * * *
438150 CATCAGCATAGTTCTTTCATTTACAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * * * *
438215 ACACATATTTAAATATATATATTTCTCTTCTTATAATGTTGCTTGTATATTTTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * ** *
438280 AAAGCAATGCG-AG--------AG--TCAACATCGGTAAATCATATATATGATCCGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* * * * * *
438334 ACCGAGGTCGTATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* * * * *
438399 TTGACAAGTCATTGAATTGAATTAAATTGAAATTAGGTGATTGTTTTATTTTAAATGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * * *
438464 CTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTAATAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * ** * *
438529 TCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * * * *
438594 TGTAGGTCTTGATGCCTTCATCCATATCATCTTGTTATAGTGTTGCTTCC-AGCTCTACTATAG-
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
*
438657 TGAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGTTTTCTAAC
521 T-AGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* *
438722 TCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTTCACGCCAACCACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* * *
438787 ACATCCTTTACCATTTTCGTTACATCCAATCAACAACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * * *
438827 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCAATCATTTCCATTGCCTACAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
438892 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
*
438957 AAAGCACTGCGAAGTTCTTACTGGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
*
439022 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
*
439087 ATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTTTTATTTTAATTGT-AAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* *
439151 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTTTACTAAGACCTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * *
439216 TCATAATAAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* ** * * * * *
439281 TGTCA-GTCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATAT
456 TGT-AGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
*
439345 CTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* *
439410 TCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTTCACGCCAACCACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* * *
439475 ACATCCTTTACCATTTTCGTTACATCCAATCAACAACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * * *
439515 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCAATCATTTCCATTGCCTACAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
439580 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* *
439645 AAAGTACTGCGAAGTTCTTGA-TAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCAT
131 AAAGCACTGCGAAGTTCTT-ACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCAT
*
439709 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
439774 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* * **
439839 TCTTCATATGGTGTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* *
439904 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * *
439969 TTATAAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAG
455 TTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
440034 CTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * * *
440099 TCATATATAGTTAGAGGG-CACAATCCGTTCGTTGAATTACTATCATTGTCCACGCCAACTACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
440163 ACATCCTTCACCATTTTTTCTTACATTCAATCAACCACTAT
650 ACATCCTTCACCA-TTTTCCTTACATCCAATCAACCACTAT
* * * * *
440204 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTAAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
440269 AAACATATTTAAATATACATATTTCCCTTCTTCTTATAACGTTGTTTGTACATTTCCAGTCTTCA
66 ACACATATTTAAATATACATATTT-CC--CTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAA
* * *** *
440334 ATCAAAGCACTGCGAATTTTTTTACTAGAATCAAGATCGTTAAATCATATATATGATCCGAAACT
128 ATCAAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACT
* * * * *
440399 CATAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAG
192 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAG
* ** *
440464 AAGAATGACAAGTCATTGAATTGAATTAAATTATAATTAGGTGATTGTTTTATTTTAATTGTAAA
257 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * * * * * *
440529 AACTCTTCTTGTGGTGCCTAACAACACTATAAATAGGAACCTCCACGACATTTGTACTAAGAATT
322 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* * ** * * *
440594 TTTTTCATAAGAAACTCTTTGAAAAATTACATTCATTTTAGTTCTTGGATTAAAACTCTATCGGT
387 TTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
* * ** * * *
440659 TTCTTGTCGATCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAA
452 TTCTTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTA
*
440724 TAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCT
517 TAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCT
* * *
440789 AACTCATATATTGTTAGAGGGTCATAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCA
582 AACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCA
* **
440854 CAAACATCCTTAACCATTTTCCTTACATCCAATCAATAACTAT
647 CAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
*
440897 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
440962 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * *
441027 AAAGTACTGCGAAGTTCTTAATAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
*
441092 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
441157 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* *
441222 CTTCATATGGTGCCTATCAACTCTATAATTAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* ** * * * * *
441287 GCATAAAAAACTCTTTGAAAGATTGCTTTCATTTAAGTTATTGGATTAGAACTGTATCAG-TACT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* *
441351 TGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * * * *
441416 TAGTGGGTCATGTTCCACCCTCTATCACTTCTATTCCCTCTTTAGTATATTATTGGTTCCTAACT
521 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*** * *
441481 CATATATAGTTAGACATTCACAATCCACCCTTTG-ATATACTATCATTCTCCACGCCAACCACAA
586 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCACAA
*
441545 ACATCCTTCACCATTTTCGTTACATCCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * ** * * *
441585 AATCAGCACAGTTCTTTCATTTACAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * * * *
441650 ACACATATTTAAATATATATATTTCTCTTCTTATAATGTTGCTTGTATATTTTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * *
441715 AAAGCACTGCG-AG--------AG--TCAACATCGGGAAATCATATATATGATCCGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* * * * * *
441769 ACCGAGGTCGTATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* * * * *
441834 TTGACAAGTCATTGAATTGAATTAAATTGAAATTAGGTGATTGTTTTATTTTAAATGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * *
441899 CTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * ** * *
441964 TCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * * * *
442029 TGTAGGTCTTGATGCCTTCATCCATATCATCTTGTTATAGTGTTGCTTCC-AGCTCTACTATAGC
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* *
442093 GAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGTTTTCTAACT
521 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* * *
442158 CATATATAGTTAGAGGGTCATAATCCATCTTTTGAATTACTATCATTGTTCACGCCAACCACAAA
586 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* * *
442223 CATCCTTTACCATTTTCGTTACATCCAATCAACAACTAT
651 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * * *
442262 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCAATCATTTCCATTGCCTACAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
442327 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* *
442392 AAAGCACTGCGAAGTTCTTACTGGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
*
442457 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
*
442522 ATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTGTTTATTTTAATTGT-AAAAC
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAAC
*
442586 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGACCTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* * *
442651 TGCATAATAAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAAAACTCTATTGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
** * ** * * * * *
442716 TTGTCTGTCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATAT
455 TTGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
*
442781 CTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
520 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
** *
442846 TCATATATAGTTAGAGGGTCATTATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAA
585 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
442911 ACATCCTTCACCATTTTCGTTACATCCAATCAACAACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
** *
442951 CAGAACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
443015 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
443080 AAAGCACTGGGAATTTCTTAATAGAATCAAGAT-GGGCAATCATATATATCATCTGAAACTCATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* * * *
443144 ATCGAGATCATATCTTTATTCATCCATTTTCAATCTACATGGGTAACTATCAAAAGTTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
443209 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGT-AAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * **
443273 CTTCATATGGTGTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* *
443338 GCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * *
443403 TATAAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGC
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * * *
443468 TAGTGGGTCACGTTCCACCCTCCATCACTTCAATTCTATCTTTAGTATATTGCTGGTTTCTAACT
521 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*
443533 CATATATAGTTAGAGGG-CACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
586 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* *
443597 CATCCTTCACTATTTTCCTTACATTCAATCAACCACTAT
651 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
443636 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTAT-TTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
443700 AAACATATTTAAATATACATATTTCCCTTATTATAACGTTGTTTGTACATTTCCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * **
443765 AAAGCACTGCGAATTTTCTTACTAGAATCAAGATCGGACAATGATATATATGATCCAAAACTCAT
131 AAAGCACTGCGAA-GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCAT
* * * *
443830 AATCGATATCATATCATTATT-AACCATTTTTAATCTACATGGGCAACCGTCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
443894 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* ** * *
443959 TCTTCATATGGTGTCTATCAACACTATAAATAGGCACCAACATGACATTTGTACTAAGACCTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
*
444024 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * ** * * * *
444089 TTGTCGGTCTCGAA-TTTGTCATCCATTTTATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATA
455 TTGTAGGTCTTGAAGGCT-TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
* * *
444153 TCTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATAGTTGGTTTCTAA
519 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAA
*
444218 CTCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACA
584 CTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACA
* *
444283 AACATCCTTCACCATTTTCGTTACATCCAATCAACAACTAT
649 AACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* *
444324 CATAACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
444388 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
444453 AAAGCACTGCAAATTTCTTAATAGAATCAAGAT-GGGCAATCATATATATGATCTGAAACTAATA
131 AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
* *
444517 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGAGTAACCATCAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
*
444582 ATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * * * *
444647 CTTAATATGGTGTCTATCAACACTATAAATAGGCACCTACATGGCATTTATACTAAGACCTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
444712 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * * *
444777 TATAGGTCTTGAAGGCTTCATACATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGC
456 TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * *
444842 TAGTGGGTAACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACT
521 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* * * *
444907 CATATATAATTAGAGGG-CATAATCCAAT-CGTTGAATTACTATCATTGTCCATGCCAACCACAA
586 CATATATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
444970 ACATCCTTCACCATTTTCATTACATTCAATCAACCACTAT
650 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
445010 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTT-A
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTA-CTTTCA
* * *
445074 TAAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTCCAGTCTTCAAT
65 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAAT
* * * **
445139 CAAAGTACTGTGAATTGTT-TTACTATAATCAAGATCGGTAAATCATATATATGATCTGAAACTC
130 CAAAGCACTGCGAA--GTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTC
* * * * * *
445203 ATAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGTAACCATTAAAGGGTAAGA
193 ATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGA
* * * *
445268 AGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATTGATTTATTTTAAATGTAAAA
258 AGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAA
445333 ACTCTTCAT
323 ACTCTTCAT
445342 CGGTTTCTTG
Statistics
Matches: 11454, Mismatches: 1145, Indels: 181
0.90 0.09 0.01
Matches are distributed among these distances:
676 1 0.00
677 1230 0.11
678 232 0.02
679 337 0.03
680 4 0.00
684 13 0.00
685 192 0.02
686 1120 0.10
687 1723 0.15
688 2382 0.21
689 2332 0.20
690 1270 0.11
691 2 0.00
692 52 0.00
693 511 0.04
694 53 0.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.38
Consensus pattern (689 bp):
CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
AAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
TGTAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
Found at i:446235 original size:568 final size:569
Alignment explanation
Indices: 444541--446248 Score: 1898
Period size: 573 Copynumber: 3.0 Consensus size: 569
444531 ATTATTCATC
* * * *
444541 CATTTTCAATCTACATGAGTAACCATCAAAAG-GTTAGAAGAATGACAAGTCATTTAATTGAATT
1 CATTTTCAATCTACATGA-CAACCATC-AAAGTGTAAGAAGAATGAAAAGTCATTTAATTAAATT
* * * * * *
444605 AAATTACATTTAGGTGATTGTTTTATTTTAATTGTAA-AAACTCTTAATATGGTGTCTATCAACA
64 AAATTAGATTTAGGTCATTGATTTATTTTAATTGTAATAAACTCTTCATATGATGCCTATCAACA
* * * *
444669 CTATAAATAGGCACCTACATGGCATTTATACTAAGACCTTTTTGCATAATAAACTCTTTGAATTA
129 CTATAAATAGGCTCCTACATGGCACTTGTACTAAGACCATTTTGCATAATAAACTCTTTGAATTA
* * ** * *
444734 TTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTATAGGTCTTGAAGGCTTCATA
194 TTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAATTCGTCATC
* * * *
444799 CATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGGTAACGTTCCACCCTC
259 CATTTCATCTTGTTATAGCTTTGGTTCTTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCCTC
* * * *
444864 CATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATATATAATTAGAGGG-CATA
324 TATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACA
* * * *
444928 ATCCAAT-CGTTGAATTACTATCATTGTCCATGCCAACCACAAACATCCTTCACCATTTTCATTA
389 ATCC-ATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTCCTTA
* * *
444992 CATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTAT
453 CATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
** * *
445057 TATTTCCATTACCTTT-ATAAACATATTTAAATATACATATTTCCCTTCTTAT
518 CGTTTCCATTA-CTTTCATACACATATTTAAATATACATATTTCCCTTCTTAG
* ** *** * ** ** * ** * *** ** * *
445109 AACGTTGTTTGTACATTTCCAGTCTTC-AA-TCAAAGTACTGTGAATTGT--TTT-ACTATAATC
1 CATTTTCAATCTACA-TGACAACCATCAAAGTGTAAGAAGAATGAAAAGTCATTTAATTA-AATT
* * ** * * * ** * *
445169 AAGA-TCG--GTAAATCATAT-ATATGATCTGAA-ACTCATAACCGAGCTCATATCATTATTCAT
64 AA-ATTAGATTTAGGTCAT-TGAT-TTATTTTAATTGTAATAA---A-CTC-T-TCA-TA-TGAT
*** * * * * * * * * ** * * *
445229 -CC-ATTTTCAATCTACAT-GGGTAACCATTAAAGGGTA--AG-AAGAATGACAAGTCATTGAAT
118 GCCTATCAACACTATAAATAGGCT--CC--TACATGGCACTTGTACTAA-GACCA-T-TTTGCA-
* * * **
445288 TGAATTAAA----TTGCAATTAGGTG-ATTGA-TTTA-TT-TTAAATGTAAAAACTCTTCATCGG
175 T-AA-TAAACTCTTTG-AATTA-TTGCTTTCATTTTAGTTCTTGGAT-T-AAAACTC-T-ATCGG
* * *
445345 TTTCTTGTCGGTCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTCCA
232 TTTCTTGTAGGTCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCTTAGCTCTACA
445410 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
297 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
*
445475 TAACTC--ATATAGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTATCCACGCCAACC
362 TAACTCATATATAGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACC
*
445538 AAAAAACATCCTTAACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCAT
427 -ACAAACATCCTTAACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCAT
445603 TTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACAT
491 TTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACAT
445668 ATTTCCCTTCTT-G
556 ATTTCCCTTCTTAG
445681 CATTTTCAATCTACATGGACAACCATCAAAGTGTAAGAAGAATGAAAAGTCATTTAATTAAATTA
1 CATTTTCAATCTACAT-GACAACCATCAAAGTGTAAGAAGAATGAAAAGTCATTTAATTAAATTA
*
445746 AATTTGATTTAGGTCATTGATTTATTTTAATTGTAATAAA-TCTTCATATGATGCCTATCAACAC
65 AATTAGATTTAGGTCATTGATTTATTTTAATTGTAATAAACTCTTCATATGATGCCTATCAACAC
*
445810 TATAAATAGGCTCCTCCATGGCACTTGTACTAAGACCATTTTGCATAATAAACTCTTTGAATTAT
130 TATAAATAGGCTCCTACATGGCACTTGTACTAAGACCATTTTGCATAATAAACTCTTTGAATTAT
*
445875 TGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTTGGTCTTGAATTCGTCATCC
195 TGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAATTCGTCATCC
* * * *
445940 ATTTCATCTTGTTATAGATTTGGTTCTTAGCTCTGCAATAGCTAGTGAGTCACGTTCCAACCTCT
260 ATTTCATCTTGTTATAGCTTTGGTTCTTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCCTCT
*
446005 GTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAA
325 ATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAA
*
446070 TCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTCCTTACA
390 TCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTCCTTACA
*
446135 TCCAATCAACCACTATCATCACCACACTTCTTTCATTTAGAATCCACTTCAACTTCATTCTATCG
455 TCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCG
446200 TTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTA
520 TTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTA
446249 TAACGTTGTT
Statistics
Matches: 914, Mismatches: 163, Indels: 125
0.76 0.14 0.10
Matches are distributed among these distances:
562 8 0.01
563 11 0.01
564 9 0.01
565 5 0.01
566 13 0.01
567 140 0.15
568 172 0.19
569 92 0.10
570 25 0.03
571 51 0.06
572 75 0.08
573 261 0.29
574 13 0.01
575 6 0.01
576 10 0.01
577 10 0.01
578 13 0.01
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (569 bp):
CATTTTCAATCTACATGACAACCATCAAAGTGTAAGAAGAATGAAAAGTCATTTAATTAAATTAA
ATTAGATTTAGGTCATTGATTTATTTTAATTGTAATAAACTCTTCATATGATGCCTATCAACACT
ATAAATAGGCTCCTACATGGCACTTGTACTAAGACCATTTTGCATAATAAACTCTTTGAATTATT
GCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTAGGTCTTGAATTCGTCATCCA
TTTCATCTTGTTATAGCTTTGGTTCTTAGCTCTACAATAGCTAGTGGGTCACGTTCCACCCTCTA
TCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAAT
CCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTCCTTACAT
CCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCGT
TTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTAG
Found at i:448700 original size:688 final size:689
Alignment explanation
Indices: 445681--448853 Score: 4580
Period size: 688 Copynumber: 4.6 Consensus size: 689
445671 TCCCTTCTTG
* * * *
445681 CATTTTCAATCTACATGGACAACCATC-AAAGTGTAAGAAGAATGAAAAGTCATTTAATTAAATT
1 CATTTTCAATCTACATGGGCAACCATCAAAAG-GTTAGAAGAATGACAAGTCATTTAATTGAATT
* * *
445745 AAATTTG-ATTTAGGTCATTGATTTATTTTAATTGTAATAAA-TCTTCATATGATGCCTATCAAC
65 AAA-TTGCATTTAGGTGATTGTTTTATTTTAATTGTAA-AAACTCTTCATATGGTGCCTATCAAC
* * * * * **
445808 ACTATAAATAGGCTCCTCCATGGCACTTGTACTAAGACCATTTTGCATAATAAACTCTTTGAATT
128 ACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAA
* * ** *
445873 ATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTTGGTCTTGAATTCGTCAT
193 ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCAT
* * * * * *
445938 CCATTTCATCTTGTTATAGA-TTTGGTTCTTAGCTCTGCAATAGCTAGTGAGTCACGTTCCAACC
258 CCATTTCATCTTGTTATA-ACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCC
*
446002 TCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCA
322 TCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCA
* *
446067 CAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTCCTT
387 CAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTT
*
446132 ACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTAGAATCCACTTCAACTTCATTCTA
452 ACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTA
* * *
446197 TCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGT
517 TCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGT
* *
446262 ACATTTTTAGTCTAAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATAT
582 ACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATAT
*
446327 ATATGATCTGAAACACATAATCGAGATCATATCATTATTCATC
647 ATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* *
446370 CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAGTTGAATTA
1 CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
*
446435 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * *
446500 ATAAATAGGCACCTTCATGGCATTTGTACTAAGAACTTTTTGCATAAAAAACTCTTTGAAAGATT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAATT
* * *
446565 GCTTTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGCCTTCATCCA
196 GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
* * * *
446629 TTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGGTCACGTTCCACTCTCTA
261 TTTCATCTTGTTATAACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTA
* * * * * ***
446694 TCACTTCGACTCCCTCTTTAGTATATTATTGGTTCCTAACTCATATATATTTAGACATTCACAAT
326 TCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAAT
* * * *
446759 CCACCCTTTAAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACAT
391 CCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACAT
* * * * ** * *
446824 CCAATCAACCACTATCATCAGCACAATTCGTTCATTTACAATCCACGTCAACTTTGTTTTCTCAT
456 CCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCAT
* * * *
446889 TTTCATTACTTTCATACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGTTTGTACAT
521 TTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACAT
* * * **
446954 TTTCAGTCTTCAATAAAAGCACTGC---G--------AGAATCAATATCGGTAAATCATATATAT
586 TTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATAT
* * **
447008 GATCCGAAACTCATAACCGATCTCATATCATTATTCATC
651 GATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* * * * * *
447047 CATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACATGTCATTGAATTGAATTT
1 CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
* * * *
447112 AATTGCAATTAGGTGATTGCTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * * *
447177 ATAAATAGGCTCCTCCACGACATTTGTACTAAGAACTTTTT-CAGAAGAAACTCTTTGAAAAATT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAATT
* * *
447241 GCATTCATTTTAGTTCTTGGATTAGAACTCCATCGGTTTCTTGTAGGTCTTAAAGCCTTCATCCA
196 GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
* * * *
447306 TATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTGGGTCACGTTCCACCCTCTA
261 TTTCATCTTGTTATAACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTA
*
447370 TCACTTCGATTCCATCTTTAGTATATTGATGGTTTCTAACTCATATATAGTTAGAGGGTCACAAT
326 TCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAAT
* *
447435 CCATCCTTTGAATTATTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACAT
391 CCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACAT
* *
447500 CCAATCAACCACTGTCATCACCACACTTCTTTCATTTACAATCCACTACAACTTCATTCTATCAT
456 CCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCAT
447565 TTCCATTACCTACAT--AC------------ACATATTTCCCTTCTTATAACGTTGTTTGTACAT
521 TTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACAT
*
447616 TTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATAT
586 TTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATAT
*
447681 GATCTGAAACTCATAATCGAGATAATATCATTATTCATC
651 GATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* * *
447720 CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAAAATAACAAGTCATTGAATTGAATTA
1 CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
* ** * *
447785 AATTGCAATTAGGTTTTTGTTTTATTTTAATTGTAAAAACTCTTCATGTGGTACCTATCAACACT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * ** * *
447850 ATAAATAGGCACCTCCACGACATTTGTTTTATGAACTTTTTTCATAAGAAACTCTTTGAAAAATT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAATT
* *
447915 GCATTCATTTTAGTTCTTGGATTAGAACTCCATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
196 GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
* *
447980 TATCATCTTGTTA-AAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCATGTTCCACCCTCT
261 TTTCATCTTGTTATAA-CGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCT
* * * *
448043 ATCACTTTGATTCCATCTTTAGTATATTGTTGGTTTATAACTCATATATATTTAGAGGGTCATAA
325 ATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAA
* *
448108 TCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAAAATCCTTCACCATTTTCGTTACA
390 TCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACA
* * *
448173 TCCATTCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTATCA
455 TCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCA
*
448238 TTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTGTTATAACGTTGTTTGTACA
520 TTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA
* *
448303 TTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATTGTGCAATCATATATA
585 TTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATA
*
448368 TGATCTGAAACTCATAATCGAGTTCATATCATTATTCATC
650 TGATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* * * *
448408 CATTTTCAATCTACATGGGTAACCATAAAAATGTTGGAAGAATGACAAGTCATTTAATTGAATTA
1 CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
* *
448473 AATTGCTTTTAGGGGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * * *
448538 ATAAATAGGCACCTCTATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCATTGAAAGATT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAATT
* * *
448603 GCTTTCATTTTAGTTCTTGGATTAGAACTGTGTCGG-TACTTGTAGGTCTTGAAGCCTTCATCCA
196 GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
* *
448667 TTTTATCTTGTTATAACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCAACCCTCTA
261 TTTCATCTTGTTATAACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTA
* * * ***
448732 TCACTTCGATTCCCTCTTTAGTATATTATTGGTTCCTAACTCATATATAGTTAGACATTCACAAT
326 TCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAAT
* * *
448797 CCACCCTTTGAATTATTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTT
391 CCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTT
448854 TGTTGTTTGT
Statistics
Matches: 2216, Mismatches: 234, Indels: 69
0.88 0.09 0.03
Matches are distributed among these distances:
662 56 0.03
665 1 0.00
673 215 0.10
674 342 0.15
676 272 0.12
677 263 0.12
685 1 0.00
687 48 0.02
688 817 0.37
689 197 0.09
690 4 0.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (689 bp):
CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAATT
GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
TTTCATCTTGTTATAACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTA
TCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAAT
CCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACAT
CCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCAT
TTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACAT
TTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATAT
GATCTGAAACTCATAATCGAGATCATATCATTATTCATC
Found at i:449382 original size:548 final size:549
Alignment explanation
Indices: 448357--449401 Score: 1635
Period size: 548 Copynumber: 1.9 Consensus size: 549
448347 AAGATTGTGC
* * * * *
448357 AATCATATATATGATCTGAAACTCATAATCGAGTTCATATCATTATTCATCCATTTTCAATCTAC
1 AATCATATATATAATCCGAAACTCATAACCAAGCTCATATCATTATTCATCCATTTTCAATCTAC
* * ** **
448422 ATGGGTAACCATAAAAATGTTGGAAGAATGACAAGTCATTTAATTGAATTAAATTGCTTTTAGGG
66 ATGGGCAACCATAAAAAGGTAAGAAGAATGACAAGTC---T-ATTGAATTAAATTGCAATTAGGG
*
448487 GATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
127 GATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
* * * * *
448552 CTATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCATTGAAAGATTGCTTTCATTTTAGT
192 CCATGACATTTGTACTAAGAACTTTTTGCATAAGAAACTCATTGAAAAATTGCATTCATTTTAGT
* *
448617 TCTTGGATTAGAACTGTGTCGGTACTTGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATA
257 TCTTGGATTAGAACTGTATCGGTACTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATA
* *
448682 ACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCAACCCTCTATCACTTCGATTCCCT
322 ACATTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCAACCCTCTATCACTTCGATTCCAT
* *
448747 CTTTAGTATATTATTGGTTCCTAACTCATATATAGTTAGACATTCACAATCCACCCTTTGAATTA
387 ATTTAGTATATTATTGGTTCCTAACTCATATATAGTTAGACAGTCACAATCCACCCTTTGAATTA
*
448812 TTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTGTTTGTACATTTTCAGTCT
452 CTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTGTTTGTACATTTTCAGTCT
448877 TCAATCAAAGCACTGTGAGAATCAATATCGGTA
517 TCAATCAAAGCACTGTGAGAATCAATATCGGTA
*
448910 AATCATATATATAATCCGAAACTCATAACCAAGCTCATATCATTATTCATCCATTTTGAATCTAC
1 AATCATATATATAATCCGAAACTCATAACCAAGCTCATATCATTATTCATCCATTTTCAATCTAC
* * *
448975 ATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTC-ATTGAATTAAATTGCAATTAGGTGATT
66 ATGGGCAACCATAAAAAGGTAAGAAGAATGACAAGTCTATTGAATTAAATTGCAATTAGGGGATT
* *
449039 GTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACTCTATAAATAGGCACCTCCAT
131 GTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
* * *
449104 GACATTTGTACTAAGAACTTTTTTCATAAGAAACTCTTTGAAAAATTTCATTCATTTTAGTTCTT
196 GACATTTGTACTAAGAACTTTTTGCATAAGAAACTCATTGAAAAATTGCATTCATTTTAGTTCTT
* *
449169 GGATTAGAACTGTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATAGCA
261 GGATTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATAACA
* *
449234 TTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACTTTCCACCCTCTATCACTTCGATTCCATATT
325 TTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCAACCCTCTATCACTTCGATTCCATATT
* ** * *
449298 TAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTTAATTACTA
390 TAGTATATTATTGGTTCCTAACTCATATATAGTTAGACAGTCACAATCCACCCTTTGAATTACTA
* *
449363 TCATTGTCCACGCCAACCACAAACATCCTTTACCATTTT
455 TCATTCTCCACGCCAACCACAAACATCCTTCACCATTTT
449402 CGTTACATCC
Statistics
Matches: 447, Mismatches: 44, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
548 307 0.69
549 50 0.11
553 90 0.20
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (549 bp):
AATCATATATATAATCCGAAACTCATAACCAAGCTCATATCATTATTCATCCATTTTCAATCTAC
ATGGGCAACCATAAAAAGGTAAGAAGAATGACAAGTCTATTGAATTAAATTGCAATTAGGGGATT
GTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCAT
GACATTTGTACTAAGAACTTTTTGCATAAGAAACTCATTGAAAAATTGCATTCATTTTAGTTCTT
GGATTAGAACTGTATCGGTACTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATAACAT
TGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCAACCCTCTATCACTTCGATTCCATATTT
AGTATATTATTGGTTCCTAACTCATATATAGTTAGACAGTCACAATCCACCCTTTGAATTACTAT
CATTCTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTGTTTGTACATTTTCAGTCTTCAA
TCAAAGCACTGTGAGAATCAATATCGGTA
Found at i:451537 original size:685 final size:686
Alignment explanation
Indices: 448910--453155 Score: 6070
Period size: 685 Copynumber: 6.2 Consensus size: 686
448900 AATATCGGTA
* * * * *
448910 AATCATATATATAATCCGAAACTCATAACCAAGCTCATATCATTATTCATCCATTTTGAATCTAC
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* * *
448975 ATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTC-----ATTGAATTAAATTGCAATTAGGT
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
* *
449035 GATTGTTTTATTTTAAA-TGTAAAAACTCTTCATGTGGTGCCTATCAACTCTATAAATAGGCACC
131 GATTGTTTTA-TTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACC
* * * * * * *
449099 TCCATGACATTTGTACTAAGAACTTTTTTCATAAGAAACTCTTTGAAAAATTTCATTCATTTTAG
195 TCCACGACATTTGTACTAAGAA-ATTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAG
*
449164 TTCTTGGATTAGAACTGTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTA
259 TTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTA
* *
449229 TAGCATTGGTTCCAGCTCTACTATAGCTAGTGGGTCACTTTCCACCCTCTATCACTTCGATTCCA
324 TAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCA
* *
449294 TATTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTTAATT
389 TCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATT
* *
449359 ACTATCATTGTCCACGCCAACCACAAACATCCTTTACCATTTTCGTTACATCCAAGCAACCACTA
454 ACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTA
* *
449424 TTATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTAAC-TAC
519 TCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATT-ACTTAC
* *
449488 ATACAAATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTATA
583 ATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAA
*
449553 TCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGC
648 TCAAAGCACTGCGAA-TTCTTACTAGAATCACGATCGGGC
*
449593 AATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTC-ATCTAC
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
449657 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
*
449722 GATTGTTTTATTTAAATTGTAAAAACTCTTGATATGGTGCCTATCAACACTATAAATAGGCACCT
131 GATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
* * * * *
449787 CCACGACATTTGTAATAATAAATTTTTCATAATAAACTCTTTAAAAGATTGCTTTCA-TTTACTT
196 CCACGACATTTGTACTAAGAAATTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTT
* * *
449851 CTTGGATTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATA
261 CTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATA
* *
449915 GCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCTATTCCTT
326 GCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCAT
* * *** * *
449980 CTTTAGTATATTATTGCTTCCTAACTCATATATAGTTAGACATTCACAATCTACCCTTTG-ATAT
390 CTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-T
* * * *
450044 ACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCTTTACATCCAATCAACTACTA
454 ACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTA
* * * * * ** * * * *
450109 TCATCAGCACAGTTCTTTCATTTATAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCA
519 TCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTACA
* * *
450174 TACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGTTTGTATATTTTCAGTCTTCAAT
584 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAAT
* *
450239 CAAAGCACTGCGAGAGTC--AC----AT--CGAT----A
649 CAAAGCACTGCGA-ATTCTTACTAGAATCACGATCGGGC
* * *
450266 AATCATATATATGATCCGAAACTCATAACCGAGGTCGTATCATTATTCATCCATTTTCAATCTAC
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* * * * * *
450331 ATGGGCAACAATTAAAGGGTAAGAAGATTGACAAGTCATTGAATTGAATTAAATTGAAATTAGGT
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
* *
450396 GATTGTTTTATTTTAAA-TGTAAAAACTCTTCATGTGGTTCCTATCAACACTATAAATAGGCACC
131 GATTGTTTTA-TTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACC
* * * * *
450460 TCCACGACATTTGTACTAAGAACTTTTTCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGT
195 TCCACGACATTTGTACTAAGAAATTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGT
*
450525 T-TTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATCATCTTGTTAT
260 TCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTAT
* * *
450589 AGCGTTGGTTCCAGCTATACTATCGCGAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCAT
325 AGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCAT
* *
450654 CTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTA
390 CTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTA
* *
450719 CTATCATTGTCCACGCCAACCACAAACATCCTTTACCATTTTCGTTACATCCAATCAACAACTAT
455 CTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTAT
* *
450784 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACCTACAT
520 CATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTACAT
450849 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
585 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
450914 AAAGCACTGCGAACTTCTTACTAGAATCACGATCGGGC
650 AAAGCACTGCGAA-TTCTTACTAGAATCACGATCGGGC
450952 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* *
451017 ATGGGAAACCATAAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
* * * *
451082 GATTGTTTTATTTAAATTGCAAAAACTCTTGATATGGTGCCTATCAACATTATAAATAGGCAACT
131 GATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
* *
451147 CCACGACATTTGTACTAATAAATTTTGCATAATAAACTCTTT-AAAGATTGCTTTCAATTTAGTT
196 CCACGACATTTGTACTAAGAAATTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTT
* * * *
451211 CTTGGCTTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGCCTTCATCCAT-TTACCTTGTTATA
261 CTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATA
* *
451274 GCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCTATTCCCT
326 GCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCAT
* * *** *
451339 CTTTAGTATATTATTGCTTCCTAACTCATATATAGTTAGACATTCACAATCCACCCTTTG-ATAT
390 CTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-T
* *
451403 ACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTA
454 ACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTA
* * * * * ** * * * *
451468 TCATCAGCACAGTTCTTTCATTTATAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCA
519 TCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTACA
* * *
451533 TACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGTTTGTATATTTTCAGTCTTTAAT
584 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAAT
* **
451598 CAAAGCACTGCG----------AGAGTCATC-ATCGGTA
649 CAAAGCACTGCGAATTCTTACTAGAATCA-CGATCGGGC
* * *
451626 AATCATATATATGATCCGAAACTCATAACCGAGGTCGTATCATTATTCATCCATTTTCAATCTAC
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* ** * * * *
451691 ATGGGCAACCATTAAGGGGTAAGTAGATTG-CAAGTCATTGAATTGAATTAAATTGTAATTAGGT
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
* *
451755 GATTGTTTTATTTAAATTGTAAAAACTCTTGATATGGTGCCTATCAACACTATAAATAGGCACCA
131 GATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
* * *
451820 CCACGACATTTGTACTAATAAATTTTTGCATAATAAACTCTTTAAAAGATTGTTTTCATTTTAGT
196 CCACGACATTTGTACTAAGAAA-TTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGT
* * *
451885 TCTTGGATTAGAACTCTATCAGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATCATCTTGTTAA
260 TCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTAT
* *
451950 AGCGTTGGTTCCAGCTCTACTATTGATAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCAT
325 AGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCAT
*
452015 CTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTA
390 CTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTA
*
452080 CTATCAATGTCCACGCCAACCACAAACATCCTTCACCA-TTTCGTTACATCCAATCAACCACTAT
455 CTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTAT
* *
452144 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACCTACAT
520 CATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTACAT
* * *
452209 AAACATATTTAAATATACATATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTAAAATC
585 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
*
452274 AAAGCACTGCGAAGTTCTTACTAGAATCAGGATC-GGC
650 AAAGCACTGCGAA-TTCTTACTAGAATCACGATCGGGC
** *
452311 AATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCATCCATTTTCAATCTAG
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* * *
452376 ATGGGCAAGCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTAC-ATCTAGG
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT-TAGG
* *
452440 TGATTGTTTTATTTTAATTGT-AAAACTCTTCATATGGTTCCTATCAACACTATAAATAGGCACC
130 TGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACC
* * ** ** *
452504 TCCATGGCATTTGTACTAAGACCTATTTGCATAATAAACTCTTTGAATTATTGCTTTCTTTTTAG
195 TCCACGACATTTGTACTAAGAAAT-TTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAG
* ** * ** *
452569 TTCTTGGATTAAAACTCTATCGGTTTCTTGTCCGTCTCGAATTCGTCATCCAT-TTCATCTTGTT
259 TTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATT-ATCTTGTT
* * * * * *
452633 ATAGCTTTGGTTCCTAGCTCAACAATATCTAGTGGGTCACGTTCCACCCTCTGTCACTTTGATTC
323 ATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTC
* * *
452698 CATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCATAATCCATCCTTTGAA
387 CATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAA
*
452763 TTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACAAC
452 TTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCAC
* *
452828 TATCATAACCATACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATCATTTCCATTACTT-
517 TATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTA
** * *
452892 TGTACACATATTTAAATTTACATATTTCCCTTCTTATAACGTTGTTTGTATATTTTCAGTCTTAA
582 CATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAA
* * *
452957 ATCAAAGCACTGCGAATTTCTTAATAGAATCAAGATTGGGC
647 ATCAAAGCACTGCGAA-TTCTTACTAGAATCACGATCGGGC
* * * *
452998 AA--ACATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCGATCTAC
1 AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* * * * *
453061 ATGAGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTACATTTAGGT
66 ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
*
453126 GATTGTTTTATTTTAATTGTAAAAACTCTT
131 GATTGTTTTATTTAAATTGTAAAAACTCTT
453156 TGAATTATGC
Statistics
Matches: 3176, Mismatches: 328, Indels: 115
0.88 0.09 0.03
Matches are distributed among these distances:
673 171 0.05
674 594 0.19
675 252 0.08
676 169 0.05
677 26 0.01
679 2 0.00
680 2 0.00
682 44 0.01
683 54 0.02
684 81 0.03
685 1030 0.32
686 568 0.18
687 183 0.06
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (686 bp):
AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
ATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGT
GATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
CCACGACATTTGTACTAAGAAATTTTGCATAATAAACTCTTTGAAAGATTGCTTTCATTTTAGTT
CTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCATATTATCTTGTTATA
GCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATC
TTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTAC
TATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACATCCAATCAACCACTATC
ATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTACATA
CACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCA
AAGCACTGCGAATTCTTACTAGAATCACGATCGGGC
Found at i:453761 original size:608 final size:609
Alignment explanation
Indices: 452539--453763 Score: 1809
Period size: 608 Copynumber: 2.0 Consensus size: 609
452529 TTTGCATAAT
* * *
452539 AAACTCTTTGAATTATTGCTTTCTTTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTCCGT
1 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTATACGT
** * * *
452604 CTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATATCTAGTGGG
66 CTCGAAGGCGTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCAACAATAGCTAGTGGG
** *
452669 TCACGTTCCACCCTCTGTCACTTTGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATAT
131 TCACGTTCCACCCTCCATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATAT
* *
452734 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* *
452799 CACCATTTTCGTTACATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCACTT
261 CACCATTTTCCTTACATCCAATCAACAACTATCATAACCACACTTCTTTCATTTACAATCCACTT
** * *
452864 GAACTTCATTCTATCATTTCCATTACTTTGTACACATATTTAAATTTACATATTTCCCTTCTTAT
326 GAACTTCATTCTATCATTTCCATTACTTCATAAACATATTTAAATATACATATTTCCCTTCTTAT
* *
452929 AACGTTGTTTGTATATTTTCAGTCTTAAATCAAAGCACTGCGAATTTCTTAATAGAATCAAGATT
391 AACGTTGTTTGTACATTTCCAGTCTTAAATCAAAGCACTGCGAATTTCTTAATAGAATCAAGATT
* * *
452994 GGGCAAACATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCGATCT
456 CGGCAAACATATATGATATGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCT
* * * * * *
453059 ACATGAGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTACATTTAG
521 ACATGAGCAACCATCAAAAGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTACAATTAG
*
453124 GTGATTGTTTTATTTTAATTGTAA
586 GTGATTGTTTTATTTTAAATGTAA
* *
453148 AAACTCTTTGAATTA-TGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTATAGGT
1 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTATACGT
* * * * *
453212 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGG
66 CTCGAAGGCGTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCAACAATAGCTAGTGGG
* * *
453277 TCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTATCTCATATAT
131 TCACGTTCCACCCTCCATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATAT
*
453342 AGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCTAACCACAAACATCCT
196 AGTTAGAGGGTCACAATCC-ATCCGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * * *
453405 TCACCATTTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAAT-C-CT
260 TCACCATTTTCCTTACATCCAATCAACAACTATCATAACCACACTTCTTTCATTTACAATCCACT
* *
453468 TGAACTTCATTGTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCCTTCTT
325 TGAACTTCATTCTATCATTTCCATTA-CTTCATAAACATATTTAAATATACATATTTCCCTTCTT
* * * *
453533 ATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTGTTTTACTAGAATCAAG
389 ATAACGTTGTTTGTACATTTCCAGTCTTAAATCAAAGCACTGCGAATT-TCTTAATAGAATCAAG
* *
453598 A-TCGGTAAATCATATAT-ATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTT
453 ATTCGGCAAA-CATATATGAT-AT--GAAACTCATAACCGAGATCATATCATTATTCATCCATTT
* * * *
453661 TCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTG
514 TCAATCTACATGAGCAACCATCAAAAGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTA
453726 CAATTAGGTGATTGTTTTATTTTAAATGT-A
579 CAATTAGGTGATTGTTTTATTTTAAATGTAA
453756 AAACTCTT
1 AAACTCTT
453764 CATGTGGTGC
Statistics
Matches: 551, Mismatches: 58, Indels: 15
0.88 0.09 0.02
Matches are distributed among these distances:
605 26 0.05
606 87 0.16
607 125 0.23
608 179 0.32
609 134 0.24
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.39
Consensus pattern (609 bp):
AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTATACGT
CTCGAAGGCGTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCAACAATAGCTAGTGGG
TCACGTTCCACCCTCCATCACTTCGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATAT
AGTTAGAGGGTCACAATCCATCCGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
CACCATTTTCCTTACATCCAATCAACAACTATCATAACCACACTTCTTTCATTTACAATCCACTT
GAACTTCATTCTATCATTTCCATTACTTCATAAACATATTTAAATATACATATTTCCCTTCTTAT
AACGTTGTTTGTACATTTCCAGTCTTAAATCAAAGCACTGCGAATTTCTTAATAGAATCAAGATT
CGGCAAACATATATGATATGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCT
ACATGAGCAACCATCAAAAGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTACAATTAG
GTGATTGTTTTATTTTAAATGTAA
Found at i:455761 original size:681 final size:686
Alignment explanation
Indices: 453145--457155 Score: 5705
Period size: 681 Copynumber: 5.9 Consensus size: 686
453135 ATTTTAATTG
** *
453145 TAAAAACTCTTTGAATTA-TGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTATA
1 TAAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTA
* * *
453209 GGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGT
66 GGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGT
* * *
453274 GGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTATCTCATA
131 GGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATA
* *
453339 TATAGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCTAACCACAAACAT
196 TATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACAT
* * * *
453402 CCTTCACCATTTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAAT-C
260 CCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCC
* * * *
453466 -CTTGAACTTCATTGTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCCTT
325 ACTTCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTT
* * *
453530 CTTATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTGTT-TTACTAGAAT
390 CTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA--GTTCTTACTAGAAT
* * * *
453594 CAAGATCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCAT
453 CAAGATCGG-CAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCAT
* * * * *
453659 TTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAAT
517 TTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAAT
* **
453724 TGCAATTAGGTGATTGTTTTATTTTAAATGT-AAAACTCTTCATGTGGTGCCTATCATTACTATA
582 TGCAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATA
* **
453788 AATAGGCACCTCCACGACATTTGCACT-A-AA-TTTTTTT
647 AATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTCA
* * *
453825 TAAGAAACTCTTTGAAAAATTGCATTCATTTTACTTCTTGGATTAAAACTCTATCGGTTTCTTGT
1 TAA-AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGT
* ** * * *
453890 CGGTCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAG
65 AGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAG
453955 TGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCAT
130 TGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCAT
*
454020 ATATAGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACAT
195 ATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACAT
* * * *
454085 CC-TAACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCC
260 CCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCC
* *
454149 ACTTCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTT
325 ACTTCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTT
* * * * *
454214 CTTATAACGTTGTTTGTAAATTTTTAGTCTAAAATCAATGCACTGCGAAGTTCTTAATAGAATCA
390 CTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCA
*
454279 AGATTGGGCAATC--ATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCA-TT
455 AGA-TCGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTT
* *
454341 TCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTG
519 TCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
* * *
454406 CATTTAGGTGA-TGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTA-AAA
584 CAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAA
* *
454469 -A--CACCCTCCATGGCATTTGTACTAAGAACTTTTTCA
649 TAGGCA-CCTCCACGACATTTGTACTAAGAACTTTTTCA
* * * * * *
454505 TAAAAACTCTTTCAAAGATTGC-TTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTATA
1 TAAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTA
*
454568 GGTCTTGAAGCCTTCATCCA-TT-ATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGT
66 GGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGT
* * * * * *
454631 GGGTCACGTTCCACCCTCTAGCACTTCGATTCCCTCTTTAATATTTTATTGGTTCCTAACTCATA
131 GGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATA
*** * *
454696 TATAGTTAGACATTCACAATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATC
196 TATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
* * *
454761 CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCAGCAAAGTTCTTTCATTTACAATCCA
261 CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCA
* ** * * * *
454826 CGTCAACTTTGTTTTCTCATTTTCATTA-CTTCCATACACATATTTAAATATACATATTTCTCTT
326 CTTCAACTTCATTCTATCATTTCCATTACCTT-CATACACATATTTAAATATACATATTTCCCTT
*
454890 CTTATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT---AAG--------AGAATCA
390 CTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCA
* * * * *
454944 ATATCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTT
455 AGATCGG-CAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTT
* * *
455009 TCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
519 TCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
*
455074 CAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAA
584 CAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAA
* * *
455139 TAGGCAACTCAACGACATTTGTACTAAGAACTTTTTCG
649 TAGGCACCTCCACGACATTTGTACTAAGAACTTTTTCA
* *
455177 TAAGAAACTCTTTGAAAAATTGCATTCA-TTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGT
1 TAA-AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGT
* * * *
455241 AGGCCTTGAAGCCTTCATCCA-AT-ATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAG
65 AGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAG
* * * *
455303 TAGGTCACGTTCCACCCTCTATCACTTTGATTCCATCTTTAGTATATTGATGGTTTATAACTC-T
130 TGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCAT
*
455367 ATATAGTTAGAGGGTCACAATCCATCCTTTGAATTATTATCATTGTCCACGCCAACCAC-AACAT
195 ATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACAT
*
455431 CCTTCACCATTTT-GTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAATCC
260 CCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCC
*
455495 ACTTCAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTT
325 ACTTCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTT
*
455560 CTTATAACGCTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCA
390 CTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCA
455625 AGATCAGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTT
455 AGATC-GGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTT
455690 TCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
519 TCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
* * *
455755 CAATTAGGTGATTATTTTA-TTTAAATTGTAAAAAATCTTGATATGGTGCCTATCAACACTATAA
584 CAATTAGGTGATTGTTTTATTTTAAA-TGTAAAAACTCTTCATATGGTGCCTATCAACACTATAA
* * *
455819 ATAGGCACCACCACGACATTTGTACTAATAAATTTTTGCA
648 ATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT-CA
*
455859 TAATAAACTCTTT-AAAAGATTGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTG
1 TAA-AAACTCTTTGAAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTG
* * * * *
455923 TAGGTCTTGAAGCCTTCATCCATATCATCTTGTTAAAGCGTTGGTTCC-AGCTGTACTATTGATA
64 TAGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTA
455987 GTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCA
129 GTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCA
* *
456052 TATATAGTTAGAGGGTCACAATCCATCCTTTGAATTA-TAGCAATGTCCACGCCAACCACAAACA
194 TATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACA
*
456116 T-CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTA-TTACAATC
259 TCCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATC
* *
456179 CACTTCAACTTCATTCTATCATTTCCATTACCTACATAAACATATTTAAATATACATATTTCCCT
324 CACTTCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCT
* *
456244 TCTTATAACATTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATC
389 TCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATC
* **
456309 AGGATCGGCAATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCATCCATTT
454 AAGATCGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTT
* * *
456374 TCAATCTACATGGGCAACGATCAAAAGGTTAGAAGAATGACAAGTCATTTAA-TGAATTAAATTA
519 TCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
*
456438 C-ATCTAGGTGATTG-TTTATTTTAATTGT-AAAACTCTTCATATGGTGCCTATCAACACTATAA
584 CAAT-TAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAA
* * * * *
456500 ATAGGCACCGCCATGGCATTTGTACTAAGACCTATTTGCA
648 ATAGGCACCTCCACGACATTTGTACTAAGAACT-TTTTCA
** * *
456540 TAATAAACTCTTTGAATTATTGCTTTC-TTTTAAGTTTTTGGATTAAAACTCTATCGGTTTCTTG
1 TAA-AAACTCTTTGAAAAATTGCTTTCATTTT-AGTTCTTGGATTAGAACTCTATCGGTTTCTTG
** * ** * * * * *
456604 TCCGTCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATATCTA
64 TAGGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTA
* *
456669 GTGGGTTACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCA
129 GTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCA
*
456734 TATATAGTTAGAGGGTCATAATCCATCCTTTGAATTAC--T-ATTGTCCACGCCAACCACAAACA
194 TATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACA
* *
456796 TCCTTCACCATTTTAGTTACATCCAATCAA-CACTATCATAACCATACTTCTTTCA-TTACAATC
259 TCCTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATC
** *
456859 CACTTCAACTTCATTCTATCATTTCCATTA-CTTTGTACACATATTTAAATTTACATATTTCCCT
324 CACTTCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCT
* * * *
456923 TCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATC
389 TCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATC
* * *
456988 AAGATTGGGCAAACATATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATT
454 AAGA-TCGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATT
* * * * *
457053 TTCGATCTACATGAGTAACCATCAAAAGGTTAGAAGAATGAGAAGTCATTTAA-TGAATT-AATT
518 TTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATT
* * * *
457116 ACATTTAGGTGATTGTGTTATTTTAATTGTAAAAACTCTT
583 GCAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTT
457156 TGAATTATTG
Statistics
Matches: 2998, Mismatches: 272, Indels: 121
0.88 0.08 0.04
Matches are distributed among these distances:
664 3 0.00
665 13 0.00
667 44 0.01
668 72 0.02
669 46 0.02
670 146 0.05
671 21 0.01
672 84 0.03
673 117 0.04
674 52 0.02
675 159 0.05
676 152 0.05
677 38 0.01
678 32 0.01
679 147 0.05
680 325 0.11
681 459 0.15
682 383 0.13
683 147 0.05
684 212 0.07
685 263 0.09
686 83 0.03
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (686 bp):
TAAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTA
GGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGT
GGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATA
TATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCA
CTTCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTC
TTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAA
GATCGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTC
AATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCA
ATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATA
GGCACCTCCACGACATTTGTACTAAGAACTTTTTCA
Found at i:458570 original size:683 final size:687
Alignment explanation
Indices: 457146--461154 Score: 5559
Period size: 683 Copynumber: 5.9 Consensus size: 687
457136 TTTTAATTGT
** * * *
457146 AAAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATATGTTTCTTATAG
1 AAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTAT-CGGTTCTTGTAG
* * *
457211 GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTG
65 GTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTG
* *
457276 GGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATAT
130 GGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATAT
* *
457341 ATAGTTAGAGGG-CATAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
195 ATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
* * *
457404 CTTCACCATTTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCA
259 CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCA
* * * * *
457469 CTTGAACTTCATTCTATTATTTCCAATACCTTCATAAACATATTTAAATATACATATTTCCCTTC
324 CTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTC
* * * * * *
457534 TTATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTATTGCGAATTGTTTTACTAGAATCA
389 TTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA--GTCTTAATAGAATCA
** * * *
457599 AGATCGGTAAATC--ATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTT
452 AGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTT
* * * * *
457662 TCAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTG
517 TCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTG
* * * **
457727 CAATTAGGTGATTGTTTTATTTTAAATGTAAAAACACTTCATGTGGTGCCTATCATTACTATAAA
582 CAATTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAA
* *
457792 TAGGCACCTCCACGACATTTGCACTAA-AATTTTTTTCATA
647 TAGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATA
* * * * * *
457832 AGAAACTCTTTGAAAAATGGCATTCATTTTACTTCTTGGATTAAAACTCTATCGGTTCTTGTCGG
1 AAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTCTTGTAGG
** * * *
457897 TCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGG
66 TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
457962 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
131 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
*
458027 TAGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
196 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * *
458092 TAACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
261 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
*
458157 TCAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTT-AA-ATACATATTTCCCTTCTT
326 TCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTT
* * *
458220 ATAACGTTGTTTGTA-ATTTTTAGTCTAAAATCAATGCACTGCGAAGTCTTAATAGAATCAAGAT
391 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTCTTAATAGAATCAAGAT
*
458284 TGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * * *
458349 TCTACATGGGTAACCATCAAAAGGTTAGAAGAAGGACAAGTCATTTAATTGAATTAAATTGCATT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
*
458414 TAGGTGATTGTTTTA-TTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* *
458478 CACCTCCATGGCATTTGTACTAAGAACTTTTTTCATA
651 CACCTCCACGACATTTGTACTAAGAACTTTTTTCATA
* * * * * *
458515 AAAAACTCTTTCAAAGATTGCTTTCATTTTAATTCTTGGATTAGAATTGTATCGGTACTTGTAGG
1 AAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTCTTGTAGG
* *
458580 TCTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGG
66 TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
* * * * * *
458645 GTCACGTTCCACCCTCTAGCACTTCGATTCCCTCTTTAATATTTTATTGGTTCCTAACTCATATA
131 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
*** * *
458710 TAGTTAGACATTCACAATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCT
196 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * * *
458775 TCACCA--TTCGTTACAT-CAATCAACCACTATCATCAGCAAAGTTCTTTCATTTACAATCCACG
261 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
** * * * *
458837 TCAACTTTGTT-TTTCATTTTCATTACTTCCATACACATATTT-AA-ATACATATTTCTCTTCTT
326 TCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTT
* *
458899 ATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT---AAG-------AGAATCAATAT
391 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTCTTAATAGAATCAAGAT
** * * *
458954 CGGTAAATC--ATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTTCAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * *
459017 TCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
* *
459082 TAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * * *
459147 CAACTCAACAACATTTGTACTAAGAAC-TTTTTCGTA
651 CACCTCCACGACATTTGTACTAAGAACTTTTTTCATA
* * *
459183 AGAAACTC-TTGAAAAATTGCATTCA-TTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAG
1 AAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATC-GGTTCTTGTAG
* * * * * *
459246 GCCTTGAAGCCTTCATCCATATCATCTTGTTATAACGTTGGTTCC-AACTCTACTATAGCGAGTA
65 GTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTG
* *
459310 GGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGATGGTTTATAACTCATAT
130 GGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATAT
*
459375 ATAGTTAGAGGGTCACAATCCATCCTTTGAATTATTATCATTGTCCACGCCAACCACAAACATCC
195 ATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCC
* * * *
459440 TTCACCATTTTTGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAACCCAC
260 TTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAC
459505 TTCAACTTCATTCTATCATTTCCATTA----CATACAACATATTTAAATATACATATTT-CCTTC
325 TTCAACTTCATTCTATCATTTCCATTACTTTCATAC-ACATATTTAAATATACATATTTCCCTTC
* *
459565 TTATAACGCTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAA
389 TTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAG-TCTTAATAGAATCAA
*
459630 GATCAGGCAATCATATATATATGATCTGAAA-TCATAATCGAGATCATATCATTATTCATCCATT
453 GATCGGGCAATC--ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATT
459694 TTCAATCTACATGGGCAACCATC-AAAGGTTAGAAGAA-GACAAGTCATTGAATTGAATTAAATT
516 TTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATT
* * *
459757 GCAATTAGGTGATTATTTTATTTAAATTGTAAAAA-TCTTGATATGGTG-CTATCAACACTATAA
581 GCAATTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAA
* * * *
459820 ATAGGCACCACCACGACATTTGTACTAATAA-ATTTTGCATA
646 ATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATA
* *
459861 ATAAACTCTTT-AAAAGA-TGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTA
1 AAAAACTCTTTGAAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGG-TTCTTGTA
* * * * *
459924 GGTCTTGAAGCCTTCATCCATATCATCTTGTTAAAGCGTTGGTTCC-AGCTGTACTATTGATAGT
64 GGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGT
459988 GGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATA
129 GGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATA
* *
460053 TATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCAATATCCACGCCAACCACAAACATC
194 TATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
*
460118 CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCA-C-CA-TACTTT-A-TTACAATCCA
259 CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCA
* * *
460178 CTTCAACTTCATTCTATCATTTCCATTACCTACATAAACATATTTAAATATACATATTTCCCTTC
324 CTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTC
* * * *
460243 TTATAACATTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAG
389 TTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAG-TCTTAATAGAATCAA
**
460308 GATC-GGCAATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCATCCATTTT
453 GATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTT
* * *
460372 CAATCTACATGGGCAACGATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTAC
518 CAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGC
460437 -ATCTAGGTGATTGTTTTATTTTAATTGT-AAAACTCTTCATATGGTGCCTATCAACACTATAAA
583 AAT-TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAA
* * ** * * *
460500 TAGGCACCGCCATGGTATTTGTACTAAGACCTATTTGCATA
647 TAGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATA
* ** * * *
460541 ATAAACTCTTTGAATTATTGCTTTC-TTTTAAGTTCTTGGATTAAAACTCTATCGATTTCTTGTC
1 AAAAACTCTTTGAAAAATTGCTTTCATTTT-AGTTCTTGGATTAGAACTCTATCG-GTTCTTGTA
* * ** * ** * * *
460605 CGTCTCGAATTCGTCATCCATTTCATCTTGTTATAGATTTGGTTCCTAGCTCAACAATATCTAGT
64 GGTCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGT
* *
460670 GGGTTACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATA-TGTTGGTTTCTAACTC--A
129 GGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATA
*
460732 TATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
194 TATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATC
* * * *
460797 CTTCACCATTTTAGTTACATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCA
259 CTTCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCA
* *
460862 CTTCAACTTCATTCTATCATTTCCATTACTTT-GTACACATA-TTAAATTTACATATTTCCCTTC
324 CTTCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTC
* * * *
460925 TTATAACATTGTTTGTAGATTTTCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATCAA
389 TTATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA-GTCTTAATAGAATCAA
* * *
460990 GATTGGGCAAACATATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATTTT
453 GATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTT
* * * * *
461055 CGATCTACATGAGTAACCATC-AAAGGTTAGAAGAATG--AAGTCATTTAATTGAATTAAATTAC
518 CAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGC
* *
461117 ATTTAGGTGATTGTGTTATTTTAATTGTAAAAACTCTT
583 AATTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTT
461155 TGAATTATTG
Statistics
Matches: 2967, Mismatches: 295, Indels: 127
0.88 0.09 0.04
Matches are distributed among these distances:
666 166 0.06
667 72 0.02
668 195 0.07
669 127 0.04
670 28 0.01
671 3 0.00
674 37 0.01
675 18 0.01
676 58 0.02
677 53 0.02
678 202 0.07
679 484 0.16
680 204 0.07
681 146 0.05
682 276 0.09
683 487 0.16
684 73 0.02
685 145 0.05
686 193 0.07
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (687 bp):
AAAAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTCTTGTAGG
TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
TCAACTTCATTCTATCATTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTT
ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTCTTAATAGAATCAAGAT
CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
CACCTCCACGACATTTGTACTAAGAACTTTTTTCATA
Found at i:459995 original size:679 final size:681
Alignment explanation
Indices: 457148--461154 Score: 5437
Period size: 679 Copynumber: 5.9 Consensus size: 681
457138 TTAATTGTAA
** ** *
457148 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATATGTTTCTTATAGGT
1 AAACTCTTT-AAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
457213 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
457278 TCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
* *
457343 AGTTAGAGGG-CATAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
195 AGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * * *
457406 TCACCATTTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACT
259 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACT
* * * *
457471 TGAACTTCATTCTATTATTTCCAATACCTTCATAAACATATTTAAATATACATATTTCCCTTCTT
324 TCAACTTCATTCTATCATTTCC-AT---TACATACACATATTTAAATATACATATTTCCCTTCTT
* * * *
457536 ATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTATTGCGAATTGTT-TTACTAGAATCAA
385 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA--GTTCTTACTAGAATCAA
* * * * *
457600 GATCGGTAAAT-CATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTTC
448 GATCGGCAAATATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTC
* * * *
457664 AATCTACATGGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTGCA
513 AATCTACATGGGCAACCATCAAA-GGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCA
* * **
457729 ATTAGGTGATTGTTTTATTTTAAA-TGTAAAAACACTTCATGTGGTGCCTATCATTACTATAAAT
577 ATTAGGTGATTGTTTTA-TTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAAT
* *
457793 AGGCACCTCCACGACATTTGCACTAA-AATTTTTTTCATAAG
641 AGGCACCTCCACGACATTTGTACTAAGAA-CTTTTTCATAAG
* * * * *
457834 AAACTCTTTGAAAAATGGCATTCATTTTACTTCTTGGATTAAAACTCTATCGG-TTCTTGTCGGT
1 AAACTCTTT-AAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
** * * *
457898 CTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
457963 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*
458028 AGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * *
458093 AACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
260 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
*
458158 CAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTT-AA-ATACATATTTCCCTTCTTA
325 CAACTTCATTCTATCATTTCCATTA----CATACACATATTTAAATATACATATTTCCCTTCTTA
* * * *
458221 TAACGTTGTTTGTA-ATTTTTAGTCTAAAATCAATGCACTGCGAAG-TCTTAATAGAATCAAGAT
386 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGA-
*
458284 TGGGC-AATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
450 TCGGCAAAT-ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
* * * *
458348 ATCTACATGGGTAACCATCAAAAGGTTAGAAGAAGGACAAGTCATTTAATTGAATTAAATTGCAT
514 ATCTACATGGGCAACCATC-AAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAA
*
458413 TTAGGTGATTGTTTTATTT-AATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTATAAATAG
578 TTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
* * *
458477 GCACCTCCATGGCATTTGTACTAAGAACTTTTTTCATAAA
643 GCACCTCCACGACATTTGTACTAAGAAC-TTTTTCATAAG
* * * * *
458517 AAACTCTTTCAAAGATTGCTTTCATTTTAATTCTTGGATTAGAATTGTATCGG-TACTTGTAGGT
1 AAACTCTTT-AAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* *
458581 CTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * * * *
458646 TCACGTTCCACCCTCTAGCACTTCGATTCCCTCTTTAATATTTTATTGGTTCCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * *
458711 AGTTAGACATTCACAATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * *
458776 CACCA--TTCGTTACAT-CAATCAACCACTATCATCAGCAAAGTTCTTTCATTTACAATCCACGT
260 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
** * * *
458838 CAACTTTGTT-TTTCATTTTCATTACTTCCATACACATATTT-AA-ATACATATTTCTCTTCTTA
325 CAACTTCATTCTATCATTTCCATTA----CATACACATATTTAAATATACATATTTCCCTTCTTA
* *
458900 TAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT---AAG--------AGAATCAATAT
386 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
* * * * *
458954 CGGTAAAT-CATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTTCAAT
451 CGGCAAATATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAAT
* *
459018 CTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATT
516 CTACATGGGCAACCATCAAA-GGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATT
*
459083 AGGTGATTGTTTTATTTTAAA-TGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGG
580 AGGTGATTGTTTTA-TTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * * *
459147 CAACTCAACAACATTTGTACTAAGAACTTTTTCGTAAG
644 CACCTCCACGACATTTGTACTAAGAACTTTTTCATAAG
* * * *
459185 AAACTCTTGAAAAATTGCATTCA-TTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGCC
1 AAACTCTTTAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
* * * * *
459249 TTGAAGCCTTCATCCATATCATCTTGTTATAACGTTGGTTCC-AACTCTACTATAGCGAGTAGGT
66 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
* *
459313 CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGATGGTTTATAACTCATATATA
131 CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
*
459378 GTTAGAGGGTCACAATCCATCCTTTGAATTATTATCATTGTCCACGCCAACCACAAACATCCTTC
196 GTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTC
* * *
459443 ACCATTTTTGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAACCCACTTC
261 ACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTC
459508 AACTTCATTCTATCATTTCCATTACATACAACATATTTAAATATACATATTT-CCTTCTTATAAC
326 AACTTCATTCTATCATTTCCATTACATAC-ACATATTTAAATATACATATTTCCCTTCTTATAAC
*
459572 GCTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCAGG
390 GTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATC-GG
459637 CAATCATATATATATGATCTGAAA-TCATAATCGAGATCATATCATTATTCATCCATTTTCAATC
454 CAA--ATATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATC
459701 TACATGGGCAACCATCAAAGGTTAGAAGAA-GACAAGTCATTGAATTGAATTAAATTGCAATTAG
517 TACATGGGCAACCATCAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAG
* *
459765 GTGATTATTTTATTTAAATTGTAAAAA-TCTTGATATGGTG-CTATCAACACTATAAATAGGCAC
582 GTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCAC
* * * * *
459828 CACCACGACATTTGTACTAATAAATTTTGCATAAT
647 CTCCACGACATTTGTACTAAGAACTTTTTCATAAG
*
459863 AAACTCTTTAAAAGA-TGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
1 AAACTCTTTAAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * * * *
459927 CTTGAAGCCTTCATCCATATCATCTTGTTAAAGCGTTGGTTCC-AGCTGTACTATTGATAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
459991 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
* *
460056 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCAATATCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
460121 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATA---CTTT-A-TTACAATCCACTT
260 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
*
460181 CAACTTCATTCTATCATTTCCATTACCTACATAAACATATTTAAATATACATATTTCCCTTCTTA
325 CAACTTCATTCTATCATTTCCA-T---TACATACACATATTTAAATATACATATTTCCCTTCTTA
* * *
460246 TAACATTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAGGAT
386 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
**
460311 CGGC-AATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCATCCATTTTCAA
451 CGGCAAAT-ATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * *
460375 TCTACATGGGCAACGATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTAC-AT
515 TCTACATGGGCAACCATC-AAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
*
460439 CTAGGTGATTGTTTTATTTTAATTGT-AAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
579 -TAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
* * ** * * *
460503 GCACCGCCATGGTATTTGTACTAAGACCTATTTGCATAAT
643 GCACCTCCACGACATTTGTACTAAGAACT-TTTTCATAAG
** * * **
460543 AAACTCTTTGAATTATTGCTTTC-TTTTAAGTTCTTGGATTAAAACTCTATCGATTTCTTGTCCG
1 AAACTCTTT-AAAAATTGCTTTCATTTT-AGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGG
* ** * ** * * *
460607 TCTCGAATTCGTCATCCATTTCATCTTGTTATAGATTTGGTTCCTAGCTCAACAATATCTAGTGG
64 TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
* *
460672 GTTACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATA-TGTTGGTTTCTAACTC--ATA
129 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
*
460734 TAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
194 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * *
460799 TCACCATTTTAGTTACATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCACT
259 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACT
* *
460864 TCAACTTCATTCTATCATTTCCATTACTTTGTACACATA-TTAAATTTACATATTTCCCTTCTTA
324 TCAACTTCATTCTATCATTTCCATTAC---ATACACATATTTAAATATACATATTTCCCTTCTTA
* * * * *
460928 TAACATTGTTTGTAGATTTTCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATCAAGAT
386 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGA-
* * * *
460993 TGGGCAAACATATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCGA
450 TCGGCAAATATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * * * *
461058 TCTACATGAGTAACCATCAAAGGTTAGAAGAATG--AAGTCATTTAATTGAATTAAATTACATTT
515 TCTACATGGGCAACCATCAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATT
* *
461121 AGGTGATTGTGTTATTTTAATTGTAAAAACTCTT
580 AGGTGATTGTTTTATTTAAATTGTAAAAACTCTT
461155 TGAATTATTG
Statistics
Matches: 2968, Mismatches: 279, Indels: 153
0.87 0.08 0.05
Matches are distributed among these distances:
666 167 0.06
667 72 0.02
668 194 0.07
669 128 0.04
670 26 0.01
671 3 0.00
674 36 0.01
675 19 0.01
676 58 0.02
677 48 0.02
678 204 0.07
679 496 0.17
680 206 0.07
681 141 0.05
682 282 0.10
683 482 0.16
684 73 0.02
685 146 0.05
686 187 0.06
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (681 bp):
AAACTCTTTAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
GTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTC
ACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTC
AACTTCATTCTATCATTTCCATTACATACACATATTTAAATATACATATTTCCCTTCTTATAACG
TTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGCA
AATATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACA
TGGGCAACCATCAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGA
TTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCC
ACGACATTTGTACTAAGAACTTTTTCATAAG
Found at i:461691 original size:602 final size:605
Alignment explanation
Indices: 460543--461758 Score: 1720
Period size: 604 Copynumber: 2.0 Consensus size: 605
460533 TTTGCATAAT
* *
460543 AAACTCTTTGAATTATTGCTTTCTTTTAAGTTCTTGGATTAAAACTCTATCGATTTCTTGTCCGT
1 AAACTCTTTGAATTATTGCTTTCTTTTAAGTTCTTGGATTAAAACTCTATCGATTTCTTATACGT
** * * *
460608 CTCGAATTCGTCATCCATTTCATCTTGTTATAGATTTGGTTCCTAGCTCAACAATATCTAGTGGG
66 CTCGAAGGCGTCATCCATTTCATCTTGTTATAGAGTTGGTTCCTAACTCAACAATAGCTAGTGGG
* **
460673 TTACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATGTTGGTTTCTAACTCATATAGT
131 TCACGTTCCACCCTCCATCACTTCGATTCCATCTTTAGTATATGTTGGTTTCTAACTCATATAGT
*
460738 TAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCAC
196 TAGAGGGTCATAATCCATCCGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCAC
* *
460803 CATTTTAGTTACATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCACTTCAA
261 CATTTTACTTACATCCAATCAACAACTATCATAACCACACTTCTTTCATTTACAATCCACTTCAA
** * *
460868 CTTCATTCTATCATTTCCATTACTTTGTACACATATTAAATTTACATATTTCCCTTCTTATAACA
326 CTTCATTCTATCATTTCCATTACTTCATAAACATATTAAATATACATATTTCCCTTCTTATAACA
* * *
460933 TTGTTTGTAGATTTTCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATCAAGATTGGGC
391 TTGTTTGTACATTTCCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATCAAGATTCGGC
* * *
460998 AAACATATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCGATCTAC
456 AAACATATATATGATACGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
* * * * *
461063 ATGAGTAACCATCAAAGGTTAGAAGAAT-GAAGTCATTTAATTGAATTAAATTACATTTAGGTGA
521 ATGAGCAACCATCAAAGGTAAGAAGAATAAAAGTCATTGAATTGAATTAAATTACAATTAGGTGA
*
461127 TTGTGTTATTTTAATTGTAA
586 TTGTGTTATTTTAAATGTAA
* *
461147 AAACTCTTTGAATTATTGCTTTCATTTT-AGTTCTTGGATTAGAACTCTATCTG-TTTCTTATAG
1 AAACTCTTTGAATTATTGCTTTC-TTTTAAGTTCTTGGATTAAAACTCTATC-GATTTCTTATAC
* * * * * *
461210 GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTG
64 GTCTCGAAGGCGTCATCCATTTCATCTTGTTATAGAGTTGGTTCCTAACTCAACAATAGCTAGTG
*
461275 GGTCACGTTCCA-CCTCCATCACTTCGATTCTATCTTTAGTATATG-TGGTTTCTAACTCATATA
129 GGTCACGTTCCACCCTCCATCACTTCGATTCCATCTTTAGTATATGTTGGTTTCTAACTC--ATA
461338 TAGTTAGAGGG-CATAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCC
192 TAGTTAGAGGGTCATAATCC-ATCCGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCC
* * * * *
461401 TTCACCA-TTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAAT-C-C
256 TTCACCATTTTACTTACATCCAATCAACAACTATCATAACCACACTTCTTTCATTTACAATCCAC
* *
461463 TTGAACTTCATTCTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCCTTCT
321 TTCAACTTCATTCTATCATTTCCATTA-CTTCATAAACATA-TTAAATATACATATTTCCCTTCT
* * * * * *
461528 TA-AACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTGTTTTACTAGAATCAA
384 TATAACATTGTTTGTACATTTCCAGTCTTAAATCAAAGCACTACGAATT-TCTTAATAGAATCAA
* * *
461592 GA-TCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTT
448 GATTCGGCAAA-CATATATATGATACGAAACTCATAACCGAGATCATATCATTATTCATCCATTT
* * *
461656 TCAATCTACA-GGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTG
512 TCAATCTACATGAGCAACCATCAAA-GGTAAGAAGAAT-AAAAGTCATTGAATTGAATTAAATTA
*
461720 CAATTAGGTGATTGTTTTATTTTAAATGTAA
575 CAATTAGGTGATTGTGTTATTTTAAATGTAA
461751 AAACTCTT
1 AAACTCTT
461759 CATGTGGTGC
Statistics
Matches: 542, Mismatches: 58, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
600 26 0.05
601 68 0.13
602 167 0.31
603 85 0.16
604 191 0.35
605 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.38
Consensus pattern (605 bp):
AAACTCTTTGAATTATTGCTTTCTTTTAAGTTCTTGGATTAAAACTCTATCGATTTCTTATACGT
CTCGAAGGCGTCATCCATTTCATCTTGTTATAGAGTTGGTTCCTAACTCAACAATAGCTAGTGGG
TCACGTTCCACCCTCCATCACTTCGATTCCATCTTTAGTATATGTTGGTTTCTAACTCATATAGT
TAGAGGGTCATAATCCATCCGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCAC
CATTTTACTTACATCCAATCAACAACTATCATAACCACACTTCTTTCATTTACAATCCACTTCAA
CTTCATTCTATCATTTCCATTACTTCATAAACATATTAAATATACATATTTCCCTTCTTATAACA
TTGTTTGTACATTTCCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATCAAGATTCGGC
AAACATATATATGATACGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
ATGAGCAACCATCAAAGGTAAGAAGAATAAAAGTCATTGAATTGAATTAAATTACAATTAGGTGA
TTGTGTTATTTTAAATGTAA
Found at i:465349 original size:682 final size:684
Alignment explanation
Indices: 461147--468188 Score: 9394
Period size: 674 Copynumber: 10.4 Consensus size: 684
461137 TTAATTGTAA
* * *
461147 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCTGTTTCTTATAGGT
1 AAACTCTTTGAA-AATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
461212 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
461277 TCACGTTCCA-CCTCCATCACTTCGATTCTATCTTTAGTATA-TG-TGGTTTCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*
461339 AGTTAGAGGG-CATAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
195 AGTTAGAGGGTCATAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
*
461402 TCACCA-TTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAAT-C-CT
259 TCACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
* *
461464 TGAACTTCATTCTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCCTTCTT
324 TCAACTTCATTCTATCATTTCCATTA-CTT-AT--ACATATTTAAATATACATATTTCCCTTCTT
* * * * *
461529 A-AACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTGTT-TTACTAGAATCAA
385 ATAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAA--GTTCTTAATAGAATCAA
* *
461592 GATCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTT
448 GATCGGTAAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTT
* * * *
461657 CAATCTACA-GGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTGC
513 CAATCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGC
* **
461721 AATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCATTAC--TAAAT
578 AATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAAT
* * *
461784 AGGCACCTCCACGACATTTGCACTAA-AATTTTTTTCATAAG
643 AGGCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* * * *
461825 AAACTCTTTGAAAAATGGCATTCATTTT--TTCTTGGATTAAAACTCTATCGGTTTCTTGTCGGT
1 AAACTCTTTG-AAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
** * * *
461888 CTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAG-GGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
461952 TCACGTTCCA-CC-CTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTC--ATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*
462013 AGTTAGAGGGTC--AATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
*
462076 AACCATTTTCCTT--ATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
260 CACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
*
462139 CAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTA
325 CAACTTCATTCTATCATTTCCATTAC-TT-AT--ACATATTTAAATATACATATTTCCCTTCTTA
* * *
462204 TAACGTTGTTTGTAAATTTTCAGACTAAAATCAATGCACTGCGAAGTTCTTAATAGAATCAAGAT
386 TAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
* ** *
462269 TGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCAT-TCATTATTCATCCATTTTCAA
451 CGGTAAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAA
* * * *
462333 TCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATT
516 TCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAAT
* *
462398 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTATAAATAGG
581 TAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * *
462463 CACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAA
646 CACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* * *
462502 AAACTCTTTGAAAGATTGCTTTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTGTAGGT
1 AAACTCTTTGAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* *
462566 CTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * *
462631 TCACGTTCCACCCTCTATCACTTCGATTCCCTCTTTAATATATTATTGGTTCCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * * *
462696 AGTTAGACATTCACAATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * * *
462761 CACCATTTTCGTTACATCCAATCAACCACTATCATCAGCACAGTTCTTTCATTTACAATCCACGT
260 CACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
** * * * * *
462826 CAACTTTGTTTTCTCATTTTCATTACTTTCATACACATATTAAATATAC--ATTTCTCTTCTTAT
325 CAACTTCATTCTATCATTTCCATTAC-TT-ATACATAT-TTAAATATACATATTTCCCTTCTTAT
* * *
462889 AACGTTGTTTGTATATTTTCAGTCTTCAATCAAAGCACTGCG-AG--------AG--TCAACATC
387 AACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATC
* * *
462943 GGTAAATCATATATATGATCCGAAACTCATAACCGAGGTCGTATCATTATTCATCCATTTTCAAT
452 GGTAAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAAT
* * * *
463008 CTACATGGGCAACCATTAAAGGGTAAGAAGATTGACAAGTCATTGAATTGAATTAAATTGAAATT
517 CTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAATT
*
463073 AGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAGGC
582 AGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGC
463138 ACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
647 ACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* *
463176 AAACTCTTTGAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
1 AAACTCTTTGAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
* * *
463241 TTGAAGCCTTCATCCATATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTGGGT
66 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
*
463305 CACGTTCCACCCTCGATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
131 CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
*
463370 GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTA
196 GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTC
463435 ACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
261 ACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
*
463500 AACTTCATTCTATCGTTTCCATTACTTTCATACACATATTT-AA-ATACATATTTCCCTTCTTAT
326 AACTTCATTCTATCATTTCCATTAC-TT-AT--ACATATTTAAATATACATATTTCCCTTCTTAT
* * *
463563 AACG-TGTTTGTAAA-TTTCAGACTAAAATCAATGCACTGCGAAGTTCTTAATAGAATCAAGAT-
387 AACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATC
** *
463625 GGGCAATC--ATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAAT
452 GGTAAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAAT
* * *
463688 CTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGC-ATT
517 CTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAATT
*
463752 AGGTGA-T-TTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATC-A-ACTAT-AA-AGGC
582 AGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG-
* * *
463811 ACCACCTCCATGGCATTTGTACTAAGAAC-TTTTGCATAAA
646 --CACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* * *
463851 AAACTCTTTGAAAGATTGCTTTCATTTTAATTC-TGGATTAGAACTGTATCGG-TACTTGTAGGT
1 AAACTCTTTGAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* *
463914 CTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * *
463979 TCACGTTCCACCCTCTATCACTTCGATTCCCTCTTTA-TATATT-ATGGTTCCTAA-TC--ATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * *
464039 A-TTAGACATTCACAATCCA---TTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * * *
464100 CACCATTTTCGTTACATCCAATCAACCACTATCATCAGCACAGTTCTTTCATTTACAATCCACGT
260 CACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
** *
464165 CAACTTTGTT-T-T--TTT-CATTACTTTCATACACATATTTAAATATAC--ATTTCTCTTCTTA
325 CAACTTCATTCTATCATTTCCATTAC-TT-AT--ACATATTTAAATATACATATTTCCCTTCTTA
* * *
464223 TAACGTTG-TTGTATATTTTCAGTCTTCAATCAAAGCACTGCG-AG--------AG--TCAACAT
386 TAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
* * *
464276 CGGTAAATCATATATATGATCCGAAAACTCATAACCGAGGTCGTATCATTATTCATCCATTTTCA
451 CGGTAAATCATATATATGATCTG-AAACTCATAACCGAGATCATATCATTATTCATCCATTTTCA
* * *
464341 ATCTACATGGGCAACCATTAAAGGGTAAGAAGATTGACAAGTCATTTGAATTGAATTAAAATTGA
515 ATCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTT-AATTGAATT-AAATTGC
*
464406 AATTAGGTGATTG-TTTATTTTAAATGTAAAAA--C-TCATGTGGTGCCTATCAACACTATAAAT
578 AATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAAT
464467 AGGCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
643 AGGCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* *
464509 AAACTCTTTGAAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
1 AAACTCTTTG-AAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
464574 CTTGAAGCCTTCATCCATATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
464638 TCACGTTCCACCCTCGATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
464703 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
*
464768 AACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
260 CACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
*
464833 CAACTTCATTCTATCGTTTCCATTACTT-T-CATATTTAAATATACATATTTCCCTTCTTATAAC
325 CAACTTCATTCTATCATTTCCATTACTTATACATATTTAAATATACATATTTCCCTTCTTATAAC
* * * * *
464896 GTTGTTTGTAAATTTTCAGACTAAAATCAATGCACTGCGAAGTTCTTAATAGAATCAAGATTGGG
390 GTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGT
* *
464961 CAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTA
455 AAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTA
* * * *
465026 CATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGG
520 CATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAATTAGG
* *
465091 TGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTATAAATAGGCACC
585 TGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACC
* * *
465156 TCCATGGCATTTGTACTAAGAACTTTTTGCATAAA
650 TCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* * *
465191 AAACTCTTTGAAAGATTGCTTTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTGTAGGT
1 AAACTCTTTGAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* *
465255 CTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * *
465320 TCACGTTCCACCCTCTATCACTTCGATTCCCTCTTTA--ATA-TATTGGTTCCTAACTCATATAT
130 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * * *
465382 AGTTAGACATTCA-CATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTT
195 AGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * * *
465446 CACCATTTT-CGTACATCCAATCAACCACTATCATCAGCACAGTTCTTTCATTTACAATCCACGT
260 CACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
** * * * *
465510 CAACTTTGTTTTCTCATTTTCATTACTTTCATACACATATTTAAATATACATATTTCTCTTCTTA
325 CAACTTCATTCTATCATTTCCATTAC-TT-AT--ACATATTTAAATATACATATTTCCCTTCTTA
* * *
465575 TAACGTTGTTTGTATATTTTCAGTCTTCAATCAAAGCACTGCG-AG--------AG--TCAACAT
386 TAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
* * *
465629 CGGTAAATCATATATATGATCCGAAACTCATAACCGAGGTCGTATCATTATTCATCCATTTTCAA
451 CGGTAAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAA
* * * *
465694 TCTACATGGGCAACCATTAAAGGGTAAGAAGATTGACAAGTCATTGAATTGAATTAAATTGAAAT
516 TCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAAT
*
465759 TAGGTGATTG---T-TTTTAAATGT-AAAACTCTTCATGTGGTGCCTATCAACACTAT-AA-AGG
581 TAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
465817 CACCTCCATGACATTTGTACTAAGAAC-TTTTTCATAAG
646 CACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* *
465855 AAACTCTTTG-AAATTGCATTCA-TTTAGTTTTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
1 AAACTCTTTGAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
* * *
465918 -T-AAGCCTTCATCCATATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTGGGT
66 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
*
465980 CACGTTCCACCCTCGATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC-AACTCATATATA
131 CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
*
466044 GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAA-C-CAAACATCCTTT
196 GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTC
* * *
466107 ACCA-TTTCGTTACA-TCAAATCAACAACTATCATCACCATACTTCATTT-ATTTACAATCCACT
261 ACCATTTTCCTTACATTC-AATCAACCACTATCATCACCACACTTC-TTTCATTTACAATCCACT
* *
466169 TCAACTTCATTCAATCATTTCCATTACCTATATACACATATTTAAATGTACATATTTCCCTTCTT
324 TCAACTTCATTCTATCATTTCCATTA-CT-TAT--ACATATTTAAATATACATATTTCCCTTCTT
* * * ** *
466234 ATAACGGTGTTTGTACATTTTCAGTCTTAAATCAAAGCAATATGAAGTTCTTACTAGAATCAAGA
385 ATAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGA
*
466299 TCGG-ACAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTC
450 TCGGTA-AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTC
* * * *
466363 AATCTACATGGGCAACCATTAAAAGGTTAGAAGAAAGACAATTCATTTAATTGAATTAAATTACA
514 AATCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCA
* * *
466428 TTTAGGTGATTGTTTTATTTTAATTGT-AAAACTCTTCATATGGTGCCTATGAACACTATAAATA
579 ATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATA
* * * * *
466492 GACACCTCCATGGCATTTGTACTATGACCTTTTTTCATAAT
644 GGCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
* * * * *
466533 AAACTCTTTGAATTATTGCTTTCAGTTTAGTTCATGGATTAAAACTCTATCGGTTTCTTGTCGGT
1 AAACTCTTTGAA-AATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* ** * * * *
466598 CTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTC-ATCAATATCTAGTGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTA-CTATAGCTAGTGG
* * *
466662 GTCACGTTCCACACTCTGTCACTTCGATTCCTTCTTTAGTATATTGTTGGTTTCTAACTCATATA
129 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
* *
466727 TAGTTAGAGGGTCATAATCCATCGTTTGAATTACTATCATTGTCTACGCCAACCACAAACATCCT
194 TAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * * * * *
466792 TCACCATTTTCGTTACATCCAATCAACAACTATCATAACCATACTTCTTTAATTTACAATCCACT
259 TCACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
* *
466857 TCAACTTCATTCTATCATTTCCATTACTTTATACACATATTTAAATTTACATATTTTCCTTCTTA
324 TCAACTTCATTCTATCATTTCCATTAC-TTAT--ACATATTTAAATATACATATTTCCCTTCTTA
* * *
466922 TAACGTTGTTTGTAGATTTTCAGTCTTAAATCAAAGCAGTGCGAATTTCTTAATAGAATCAAGAT
386 TAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
* ** * *
466987 TGGGCAATC--ATATAT-ATCTGAAAACTAATAATCGAGATCATATCATTATTCA-CCA-TTTCA
451 CGGTAAATCATATATATGATCTG-AAACTCATAACCGAGATCATATCATTATTCATCCATTTTCA
* * * * * *
467047 ATCTACAT--GAAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAACTGAATTAAATTACAT
515 ATCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAA
* *
467110 TTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGTCTATCAACACTATAAATAG
580 TTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
* * * * *
467175 GCACCTACATGGCATTTGTACTAAGAAGTTTTTGCATAAT
645 GCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAG
** * *
467215 AAACTCTTTGAATTTTTGCTTTCATTTTAGTTATTGGATTAGAACTCTATCGGTTTCTTATAGGT
1 AAACTCTTTGAA-AATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * * *
467280 CCTGAAGGCTTCA-CCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGG
65 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * * *
467344 TAACGTTTCACACCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCCAACTC--ATA
130 TCACGTTCCAC-CCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
* *
467407 TAGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCAC-AACATCC
194 TAGTTAGAGGGTCATAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCC
* * *
467469 TTCACCA-TTTCCGTACATTCAATCAACCACAATTATCACCACACTTCTTTCATTTACAATCCAC
258 TTCACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCAC
* * * *
467533 TTGAACTTAATTCTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCATTCT
323 TTCAACTTCATTCTATCATTTCCATTA-CTT-AT--ACATATTTAAATATACATATTTCCCTTCT
* * * * * * * * *
467598 TATAACATTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTTTTTACTATAATCAAG
384 TATAACGTTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAG
* * *
467663 ATCGGTAAATCATATATATGATC-CAAACTCATAACCGAGCTCATAT-AAT-TTCATCCATTTTC
449 ATCGGTAAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTC
** *
467725 AATCTACATGGGCAACCATTAATGGGTAAGAAGAATGA-AAGTCATTGAATTGAATTAAATTGCA
514 AATCTACATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCA
*
467789 ATTAGGTGATTGTTTTA-TTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATA
579 ATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATA
* *
467853 GGCACCTCCACGACATTTGTACTAA-ACATTTTTTTCATAAG
644 GGCACCTCCATGACATTTGTACTAAGA-ACTTTTTTCATAAG
* * * *
467894 AAACTCTTTGAAAATTGCATTCATTTTAGTTATTGGATTAAAACTCTATCGGTTTCTTGTCGGTC
1 AAACTCTTTGAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
* ** * *
467959 TTTAATTCGTCATCCATTTCATCTTGTTATAGC-TTGGTTCCTAGCTCTACAATAGCTAGTGGGT
66 TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
*
468023 CACGTTCCACCCTCTATCACTTCAATTCCATCTTTAG--TATTGTTGGTTTCTAACTC--ATATA
131 CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
** * *
468084 GTTAGAGGGTCGCAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTA
196 GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTC
* *
468149 ACCATTTTCCTTACATCCAATCAACCACTATCATTACCAC
261 ACCATTTTCCTTACATTCAATCAACCACTATCATCACCAC
468189 TGATGTGATC
Statistics
Matches: 5621, Mismatches: 568, Indels: 350
0.86 0.09 0.05
Matches are distributed among these distances:
651 6 0.00
652 6 0.00
653 2 0.00
654 11 0.00
655 80 0.01
656 24 0.00
657 34 0.01
658 49 0.01
659 152 0.03
660 243 0.04
661 114 0.02
662 93 0.02
663 6 0.00
664 25 0.00
665 44 0.01
666 110 0.02
667 45 0.01
668 117 0.02
669 38 0.01
670 37 0.01
671 133 0.02
672 209 0.04
673 413 0.07
674 582 0.10
675 233 0.04
676 213 0.04
677 283 0.05
678 416 0.07
679 283 0.05
680 261 0.05
681 314 0.06
682 350 0.06
683 136 0.02
684 122 0.02
685 160 0.03
686 11 0.00
687 189 0.03
688 76 0.01
689 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (684 bp):
AAACTCTTTGAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTC
TTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGT
CACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATA
GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTC
ACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTC
AACTTCATTCTATCATTTCCATTACTTATACATATTTAAATATACATATTTCCCTTCTTATAACG
TTGTTTGTAAATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGTA
AATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCATCCATTTTCAATCTAC
ATGGGCAACCATTAAAAGGTAAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCAATTAGGT
GATTGTTTTATTTTAAATGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCT
CCATGACATTTGTACTAAGAACTTTTTTCATAAG
Found at i:469921 original size:13 final size:12
Alignment explanation
Indices: 469905--469956 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 12
469895 GTGCAAAAAG
469905 AAAGAAAAGACAA
1 AAAGAAAAGA-AA
469918 AAAG--AAGAAA
1 AAAGAAAAGAAA
469928 AGAAGAAAAGAAGA
1 A-AAGAAAAGAA-A
469942 AAAGAAAAGAAA
1 AAAGAAAAGAAA
469954 AAA
1 AAA
469957 AGAAGTTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 3 0.09
11 7 0.20
12 4 0.11
13 19 0.54
14 2 0.06
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAGAAAAGAAA
Found at i:469928 original size:8 final size:8
Alignment explanation
Indices: 469900--469947 Score: 71
Period size: 8 Copynumber: 5.9 Consensus size: 8
469890 TTGGAGTGCA
469900 AAAAGAAAG
1 AAAAG-AAG
469909 AAAAGACA-
1 AAAAGA-AG
469917 AAAAGAAG
1 AAAAGAAG
469925 AAAAGAAG
1 AAAAGAAG
469933 AAAAGAAG
1 AAAAGAAG
469941 AAAAGAA
1 AAAAGAA
469948 AAGAAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
7 1 0.03
8 30 0.81
9 6 0.16
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (8 bp):
AAAAGAAG
Found at i:469930 original size:5 final size:5
Alignment explanation
Indices: 469900--469954 Score: 53
Period size: 5 Copynumber: 10.8 Consensus size: 5
469890 TTGGAGTGCA
469900 AAAAG -AAAG AAAAG ACAAA- AAGAAG AAAAG AAGAA- AAGAAG AAAAG
1 AAAAG AAAAG AAAAG A-AAAG AA-AAG AAAAG AA-AAG AA-AAG AAAAG
469946 AAAAG AAAA
1 AAAAG AAAA
469955 AAAGAAGTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
4 5 0.11
5 30 0.68
6 9 0.20
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:469957 original size:8 final size:8
Alignment explanation
Indices: 469899--469960 Score: 58
Period size: 8 Copynumber: 8.0 Consensus size: 8
469889 ATTGGAGTGC
469899 AAAAAGAA
1 AAAAAGAA
*
469907 AGAAAAGAC
1 A-AAAAGAA
469916 AAAAAGAA
1 AAAAAGAA
*
469924 GAAAAGAA
1 AAAAAGAA
*
469932 GAAAAGAA
1 AAAAAGAA
*
469940 GAAAAG--
1 AAAAAGAA
469946 -AAAAGAA
1 AAAAAGAA
469953 AAAAAGAA
1 AAAAAGAA
469961 GTTCAAAAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
5 5 0.11
8 35 0.74
9 7 0.15
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:477181 original size:684 final size:688
Alignment explanation
Indices: 474305--491573 Score: 23820
Period size: 687 Copynumber: 25.5 Consensus size: 688
474295 TTTCGCCTTA
474305 CATCAACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCA
1 CATC-ACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCA
*
474370 TACACATA-TTAAATATACAT-TTTCCC--CTTATAACGTTGTTTGTACATTTTCAGTCTAAAAT
65 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAAT
* * * * * **
474431 CAAAGCACAGCGAAGTTCTTAATAGAATCAAGATCAGGCAATCATATATATGATATGAAACTCAT
130 CAAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCAT
* * *
474496 AATCGAGATCATATCATTA-TCATCCATTTTAAATCTACATGGACAACCATC-AAAGTGTAAGAA
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAG-GTTAGAA
* * * * *
474559 GAATGAAAAGTCATTTAATTAAATTAAATTTCATTTAGGTCATTGATTTA-TTTAATTGTAATAA
259 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA-AA
* * *
474623 A-TCTTCATATGATGCCTATCAACACTATAAATAGGCACCTTCATGGCATTTGTACTAAGACCTT
323 ACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTT
* * *
474687 TTTGTATAATAAACTCTTTGAATTA-TGATTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTT
388 TTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTT
* ** * * * * *
474751 TCTTG--GTTTTTGAATTCGTCATCCATTTCATCTTGTTATAGC-TTTGTTCTTAGCTCTGCAAT
453 TCTTGTAG-TCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTAT
*
474813 AGCTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
517 AGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
*
474878 ACTCA-ATATAGTTAGAGGGTCACAATCCATCCTTTGAATTATTATCA-TGTCCACGCCAACCAC
582 ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
*
474941 AAACATTCTTCACCATTTTCCTTACATCCAATCAACCACTAT
647 AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* *
474983 CATCATCACACACTTCTTTCATTTATAATCCACTTC-ACTTCATTCTATCGTTTCCATTACTTTC
1 CATCA-C-CACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTC
* *
475047 ATACACATATTTAAATATACAT-TTTCCC-TCTTATAACGTTGTTTGTAGATTTTCAGACTTAAA
64 ATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAA
* * * * *
475110 TCAAAGAACTGCGAATTTCTTAATAGAATCAAGATTGGGCAATC--ATATATGATCTGAAACTCA
129 TCAAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCA
* * *
475173 TAATCGAGATCATATCTTTATTCATCCATTTTCAATCTACAT-GGCTAACTATCAAAAGTTTAGA
194 TAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGC-AACCATCAAAAGGTTAGA
*
475237 AGAATGACAAGTCATTTAATTGAATTAAATAGCATTTAGGTGATTGTTTTATTTTAATTGTAAAA
258 AGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAA
** * **
475302 ACTCTTCATATGGTTTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTT
323 ACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTT
* *
475367 TTTGCATAATAAACTCTTTGAATTA-TGCTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTT
388 TTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTT
* * *
475431 TCTTATAAGTCTTGAAGGCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTA--ACT-CTAT
453 TCTTGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTAT
* *
475493 AGCTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTA
517 AGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
* *
475558 ACTCATATATAGTTAGAGGG-CACAATCCATTCTTTGAATTACTATCATTGTCAACGCCAACCAC
582 ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
* *
475622 AAACATCCTTCACTATTTTCCTTACATTCAATCAACCACTAT
647 AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
475664 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTAT-TTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
475728 AAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTCCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* *
475793 AAAGCACTGCGAATTT-TTACTAGAATCAAGATC-AGACAATCATATATATGATCCAAAACTCAT
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGA-AATCATATATATGATCCGAAACTCAT
* * *
475856 AATCGATATCATATCATTATT-AACCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
*
475920 AATGACAAGTCATTTAATTGAATTAAATTGTATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* * **
475985 TCTTCAAATGGTGTCTATCAACACTATAAATAGGCACCAACATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
476050 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * *
476115 TTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAG
455 TTGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
476180 CTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAAC
519 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * *
476245 TCATATATAGTTAGAGGG-CACAATCCGTTCGTTGAATTACTATCATTGTCCACGCCAACCACAA
584 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
476309 ACATCCTTCACCATTTTTCTTACATTCAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * *
476349 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTAAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
*
476414 A-ACATA-TTAAATATACATA-TTCCCTTCTTATAACGTTGTTTGTACA--TTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* *
476474 AAAGCACTGCGAATTTTTTTACTAGAATCAAGATCGGTAAATCATATATATGATCCGAAACTCAT
131 AAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCAT
* * * * *
476539 AACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
* *
476604 AATGACAAGTC-TTTGAATTGAATTAAATTGTAATTAGGTGATTGTTTTATTTTAATTGTAAAAA
260 AATGACAAGTCATTT-AATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
* * * * * * *
476668 CTCTTCTTGTGGTGCCTATAAACACTATAAATAGGAACCTCCACGACATTTGTACTAAGAATTTT
324 CTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTT
* * ** * * *
476733 TTTCATAAGAAACTCTTT-AAAAATTACATTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTT
389 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTT
* ** * * *
476797 CTTGTCAATCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATA
454 CTTGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
* * *
476862 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCAATCCCATCTTTAGTATATTATTGGTTTCTAA
518 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAA
* * **
476927 CTCATATATAGTTAGAGGGTCATAATCCATCCATTGAATTACTATCATTGTCCACGCCATTCACA
583 CTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACA
* *
476992 AACATCCTTAACCATTTTCCTTACATCCAATCAACAACTAT
648 AACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
477033 CATCACCA-ACTTCTTTCA-TTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
477096 ACAC-TATTT-AA-ATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTACAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * *
477158 AAAGCACTGCGAATTTTTTTACTATAATCAAGATCGGTAAATCATATATATGATCCGAAACTCAT
131 AAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCAT
* * *
477223 AACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
*
477288 AATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* **
477353 TCTTCATATGGTGTCTATCAACACTATAAATAGGCACCAACATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
*
477418 TGCATAACAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * *
477483 TTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCATAACTCTACTATAG
455 TTGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
477548 CTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAAC
519 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * * *
477613 TCATATATAGTTAGAGGG-CACAATCCGTTCGTTGAATTACTATCATTGTCCACGCCAACTACAA
584 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
477677 ACATCCTTCACCATTTTTCTTACATTCAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
477717 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
477781 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGACTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * *
477846 AAAGCACTGGGAATTTCTTAATAGAATCAAGAT-GGGCAATCATATATATCATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * * *
477910 ATCGAGATCATATCTTTATTCATCCATTTTCAATCTACATGGGTAACTATCAAAAGTTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
477975 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTA-TTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * **
478039 CTTCATATGGTGTCTATTAAC-CTATAAATAGGCACCTAAATGGCATTTGTACTAAGAAC--TTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * *
478101 GCATAATAAACTCTTTAAATTATT-CTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* *
478165 TATAAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGC
456 TGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * *
478230 TAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTAACTTTAGTATA-TGTTGGTTTCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*
478294 CATATATAGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCAC-A
585 CATATATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
*
478356 ACATCCTTCACCATTTTCCTTACATTCAATCAACCAC--T
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * *
478394 -ATCACCACAC-TCTTTCATTTACAATCCACTTGAACTTAATTCTATTATTTCCATTACCTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
478457 A-ACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTACAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * *
478521 AAAGCACTGCAAATTTTTTTTCTATAATCAAGATCGGTAAATCATATATATGATCCGAAACTCAT
131 AAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCAT
* * *
478586 AACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTTAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
*
478651 AATGACAAGTCATTGAA-TGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* **
478715 TCTTCATATGGTGTCTATCAACACTATAAATAGGCACCAACATGGCATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* *
478780 TGCATAACAAACTCTTTGAATTATTGCTTTCATTGTAGTTCTTGGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * *
478845 TTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTAC-ATAG
455 TTGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
478909 CTAGTGGGTCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGT-TATTGTTGGTTTCTAAC
519 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* * * *
478973 TCATATATAGTTAGAGGG-CACAATCCGTTC-GTGAATTACTATCATTGTCCACGCCAACTACAA
584 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
479036 ACATCCTTCACCATTTTTCTTACATTCAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * *
479076 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTAAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
479141 AAACATATTTAAATATACATATTTCCCTTCTTCTTATAACGTTGTTTGTACATTTCCAATCTTCA
66 ACACATATTTAAATATACATATTT-CC--CTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAA
* *
479206 ATCAAAGCACTGCGAATTTTTTTACTAGAATCAAGATCGGTAAATCATATATATGATCCGAAACT
128 ATCAAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACT
* * * * *
479271 CATAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAG
192 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAG
* ** * *
479336 AAGAATGACAAGTCATTGAATTGAATTAAATTTTAATTAGGTGATTGGTTTATTTTAATTGTAAA
257 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * * * * *
479401 AACTCTTCTTGTGGTGCCTATCAACACTATAAATAGGAACCTCCACGACATTTGTACTAAGAATT
322 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* * ** * * *
479466 TTTTTCATAAGAAACTCTTTGAAAAATTACATTCATTTTAGTTCTTGGATTAAAACTCTATCGGT
387 TTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
* ** * * *
479531 TTCTTGTCGATCTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAA
452 TTCTTGTAG-TCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTA
*
479596 TAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCT
516 TAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCT
* * *
479661 AACTCATATATTGTTAGAGGGTCATAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCA
581 AACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCA
* *
479726 CAAACATCC-TAACCATTTTCCTTACATCCAATCAACAACTAT
646 CAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
*
479768 CATCACCACACTTC-TTCATTTACAATCCACTTCAACTTCATTCTATCGTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
479832 ACACATATTT-AA-ATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * * *
479895 AAAGTACTGCGAA-GTCTTAATAGAATCAAGATTGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
*
479959 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
480024 ATGACAAGTCATTTAA-TGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA--
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* *
480086 CTTCATATGGTGCCTATCAACTCTATAATTAGGCACCTCCATGGCATTTGTACTAAGAAC-TTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
** * * * * *
480150 GCATAA-AAACTCTTTGAAAGATTTCTTTCATTTTAATTCTTGGATTAGAACTGTATCAG-TACT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* *
480213 TGTAGGTCTTGAAGCCTTCATCCATTTTATC-TGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
456 TGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * * * *
480277 TAGTGGGTCATGTTCCA-CC-CTATCACTTCTATTCCCTC-TTAGTATATTATTGGTTCCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*** * * *
480339 CATATATAGTTAGACATTCACAATCCACCCTTTG-ATATGCTATCATTCTCCACGCCAACCACAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCACAA
*
480403 A-ATCC-TCACCATTTTCGTTACAT-CAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * ** * * *
480440 CATCAGCACAGTTCTTTCA-TTACAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * * * *
480504 ACAC-TATTTAAATATATATATTTCTCTTCTTATAATGTTGCTTGTATA-TTTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
480567 AAAGCAATGCG-----------AGAGTCAACATCGGTAAATCATATATATGATCCGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * * * * *
480621 ACCGAGGTCGTATC---ATTCATCCA-TTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* * * * *
480682 TTGACAAGTCATTGAATTGAATTAAATTGAAATTAGGTGATTG-TTT-TTTTAAATGTAAAAA-T
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * *
480744 CTTCATGTGGTGCCTATCAACACTATAAATAGGCA---CCACGACATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * ** * *
480806 TCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * * * *
480871 TGTAGGTCTTGATGCCTTCATCCATATCATCTTGTTATAGTGTTGCTTCC-AGCTCTACTATAGC
456 TGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
*
480935 GAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTT-GTTTCT-ACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* *
480998 CATATATAGTTAG-GGGTCATAATCCATCCTTTGAATTACTATCATTGTTCACGCCAACCACAAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* * *
481062 CATCCTTTACCATTTTCGTTACATCCAATCAACAACTAT
650 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * * *
481101 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCAATCATTTCCATTGCCTACAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
481166 ACATATATTT-AATATACATATTTCCCTTCTTATAACATTGTTTGTACATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
481230 AAAGCACTGCGAAGTTCTTACTGGAATCAAGATC-GGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
*
481294 ATCGAGATCATATCATTATTCATCCATTTTTCAATCTACATGGGCAACCATTAAAAGGTTAGAAG
196 ATCGAGATCATATCATTATTCATCCA-TTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
*
481359 AATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTTTTATTTTAATTGT-AAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
* *
481423 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTTTACTAAGACCTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* * *
481488 T-CATAATAAACTCTTCGAATTATTTCTTTCATTTTAGTTC-TGGATTAAAAACTCTATCGGTTT
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATT-AGAACTCTATCGGTTT
* ** * * *
481551 CTTGTCAGTCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAAC-A-A
454 CTTGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
* *
481614 TCTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAG--TATTGTTGGTTTCTAA
518 GCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAA
* *
481677 CTC--ATAT-GTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACA
583 CTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACA
* *
481739 AACATCCTTCACCATTTTCGTTACATCCAATCAACAACTAT
648 AACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* *
481780 CATAACCATACTTC-TTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
481843 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTATTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * * *
481908 AAAGCATTGGGAATTTCTTAATAGAATCAAGAT--GGCAATCATATATATCATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * * *
481971 ATCGAGATCATATCTTTATTCATCCA-TTTCAATCTACATGGGTAACTATCAAAAGTTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
482035 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * **
482100 CTTCATATGGTGTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
*
482165 GCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTCTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * *
482230 TATAAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTAGGTTCCTAACTCTACTATAGC
456 TGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
*
482295 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*
482360 CATATATAGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAA
585 CATATATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
482423 ACATCCTTCACCATTTTTCTTACATTCAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * *
482463 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTAATTCTATTATTTCCATTACCTTCA-
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
482527 A-ACATATTTAAATATACATATTTCCCTTCTTATAACGTT-TTTGTACATTTACAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
482590 -AAGCACTGCAAATTTTTTTTTCTAG-ATC-AGATCGGTAAATCATATATATGATCCGAAACTCA
131 AAAGCACTGCGAA--TTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCA
* * *
482652 T-ACCGAGCTCATATCATTATTCATCCA-TTTCAATCTACATGGGAAACCATCAAAAGGTTAGAA
194 TAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAA
*
482715 GAATGACAAGTCATTGAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGT--AAA
259 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
* *
482778 CTCTTCAT-TGGTGTCTATCAACACTATAAATAGGCACC-ACATGGCATTTG-ACT-A-AACTTT
324 CTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTT
*
482838 TTGCATAACAAACTCTTTGAATTATTGCTTTC-TTTTAGTTCTTGGATTAGAACTCTATCGGTTT
389 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTT
* *
482902 CTTATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTA-CTCTAC--TA
454 CTTGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATA
*
482964 GCTAGT-GGTCACGTTCCACCCT-TCATCACTTCGATTCTATCTTTAGTATATTG-TGGTTTCTA
518 GCTAGTGGGTCACGTTCCACCCTCT-ATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
* * * * *
483026 ACTCATATATAGTTAGAGGG-CACAATCCGTTCGTTGAATTACTATCATTGTCCATGCCAACTAC
582 ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
*
483090 -AACATCCTTCACCATTTT-CTTACATTCAATCAACCACTAT
647 AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * * *
483130 TATCACCATACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTAAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
483195 A-AAATATTTAAATATACATATTTCCCTTCTTCTTATAACGTTGTTTGTACATTTCCAATCTTCA
66 ACACATATTTAAATATACATATTT-CC--CTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAA
* *
483259 ATCAAAGCACTGCGAATTTTTTTACTAGAATCAAGATCGGTAAATCATATATATGATCCGAAACT
128 ATCAAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACT
* * * * * *
483324 TATAACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAG
192 CATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAG
* **
483389 AAGAATGACAAGTCATTGAATTGAATTAAATTATATTTAGGTGATTGTTTT-TTTTAATTGT-AA
257 AAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAA
* * * * *
483452 AACTCTTCTTGTGGTGCCTATCAACAC--TAAATA---ACCTCCACGACATTTGTACTAAGAATT
322 AACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACT
* * * * *
483512 TTTTTCATAAGAAACTCTTTGAA-AATTAC-TTCATTTTAGTTCTTGGATTAAAACTCTATCGGT
387 TTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGT
* ** * * *
483575 TTCTTGTCGATCTTGAATTCATCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAA
452 TTCTTGTAG-TCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTA
*
483640 TAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTATTGG-TTCT
516 TAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCT
* * *
483704 AACTCATATATTGTTAGAGGGTCATAATCCA-CCATTGAATTACTATCATTGTCCACGCCAACCA
581 AACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCA
*
483768 CAAACATCCTTAACCATTTTCCTTACATCCAATCAA-CACTAT
646 CAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
*
483810 CATCACCACACTTCTTTCATTTACAATCCACTTC-ACTTCATTCTATC-GTTCCATTACTTACTT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCC---A-TTACTT
*
483873 TCATACACATATTTAAATATACATATTTTCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
62 TCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTA
* * * *
483938 AATCAAAGTACTGCGAAGTTCTTGA-TAGAATCAAGAT-GGGCAATCATATATATGATCTGAAAC
127 AATCAAAGCACTGCGAATTTCTT-ACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAAC
* * *
484001 TCATAATCGAGATC--AT-A-TATTCATCCA-TTTCACTATACATGGGTAACCATCAAAAGGTT-
191 TCATAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTA
484060 --AGAATGACAAGTCA-TTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
256 GAAGAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAA
* * *
484122 AAACTCTTCATATGGTTCCTATC-A-ACTCTAATTAGGCACCTCCATGGCATTTGTACTAAGAAC
321 AAACTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAAC
** ** *
484185 TTTTTGCAT-A-AAACTCTTTGAAAGATT-CTTTCATTTTAAATCTTGGATTAGAACTGTATC-G
386 TTTTTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGG
* * *
484246 -TACTTGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
451 TTTCTTGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACT
* * * *
484310 ATA-CTAGTGGGTCATGTTCCACCCTCTATCACTTCTATTCCCTCTTTAGTATA-T-TTGGTTCC
515 ATAGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTC
***
484372 TAACTCATATATAGTTAGACATTCACAATCCA-CCTTTG-ATATACTATCATTGTCC-CGCCAAC
580 TAACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAAC
* *
484434 CACAAATATCCTTCACCA-TTT-CGTACATCCAATCAACCACTAT
644 CACAAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * ** * * *
484477 CATCAGCACAGTT-TTTCATTTACAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * * *
484541 ACACATATTTAAATAT--ATATTTCTCTTCTTATAATGTTGCTTGTATATTTTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
484604 AAAGCAATGCG-----------AGAGTCAACATCGGTAAATC--ATATATGATCCGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * * * * *
484656 ACCGAGGTCGTATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAG-AG-
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* * * *
484719 ATGACAAGTCATTGAATTGAATTAAATTGAAATTAGGTGATTGTTTTTATTTTAAATGTAAAAAC
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTG-TTTTATTTTAATTGTAAAAAC
*
484784 TCTTCATGTGGTGCCTATCAACAC--TAAATAGGCACCTCCA---CATTTGTACTAAGAACTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* * ** * *
484844 TTCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * * * *
484909 TTGTAGGTCTTGATGCCTTCATCCATATCATCTTGTTATAGTGTTGCTTCC-AGCTCTACTATAG
455 TTGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* *
484973 CGAGT-GGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAG--TATTGTTGTTTTCTAAC
519 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* *
485035 TCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTTCACGCCAACCACAA
584 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* * *
485100 ACATCCTTTACCATTTTCGTTACATCCAATCAACAACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * * *
485140 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCAATCATTTCCATTGCCTACAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
485205 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA-TTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * *
485269 AAAGCACTGCGAATTTCTTACTGGAATCAAGATCGGGCAATC--ATATATGATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
*
485332 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
*
485397 ATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTTTTATTTTAATTGT-AAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
*
485461 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTTTACTAAG-ACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * *
485525 TCATAATAAACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * ** * * * * *
485590 TGTCGGTC-CGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATATC
456 TGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * *
485654 TAGTGGGTCACGTTCCA-CCTCTGTCACTTCGATTCCGTCTTTAGTATATTTTTGGTTTCT-ACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* *
485717 CATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* * *
485782 CATCCTTCACCATTTTCGTTACATCCAATGAACAACTAT
650 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
485821 CATAACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATAATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* *
485885 ACACATATTTAAAT-TACATATTT-CCTTCTTATAACGTTATTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
485948 AAAGCACTG-GAATTTC-TAATAGAATCAAGAT-GGGCAATCATATATATCATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * **
486010 ATC--GATCATATC-TTATTCATCCATTTTCAATCTACATGGGTAACTATCAAAATTTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
486072 ATGACAAGTCATTTAA-TGAATTAAATTGCA-TTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * **
486135 CTTC--ATGGTGTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * *
486198 GCATAATAAACTCTTTGAATTATTGCTTTCA-TTTAATTTTTTGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * *
486262 TATAAGTCTTGAAGGCTTCATCTATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGC
456 TGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * *
486327 TAGTGGGTCACGTTCCACCCTCCATCACTTCAATTCTATCTTTAGTATATTGTTGGTTTCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* *
486392 CATATATAGTTATAGGG-CACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* * *
486456 CATCCTTCACTATTTTCCTTACTTTCAATCAACCACTAT
650 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * **
486495 --T-A--TCACTTCTTTCATTTACAATCCACTTGAACTTCATTCTAT--TTTTTATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
486553 AAACATATTT-AA-ATACATATTTCCCTTATTATAACGTTGTTTGTACATTTCCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * *
486616 AAAGCACTGCGAATTTTCTTACTAGAATC-A-ATC-GGACAATGATATATATGTTCCAAAACTCA
131 AAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGA-AATCATATATATGATCCGAAACTCA
486678 TAATC--G---ATATCA-TA-T--TCCATTTTCAATCTACATGGGCAACCAT--AAAGGTTAGAA
194 TAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAA
486732 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
259 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
* * *
486797 CTCTTC-TATGGTG-CTATCAACACTATAAATAGG-A-C-CAACGACATTTGTACTAAG-ACTTT
324 CTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTT
*
486856 TT-CAT-ATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTT
389 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTT
* * ** * * *
486919 CTTGTCGTCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTC-ACAATAG
454 CTTGTAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
*
486983 CTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATA-T-TTGGTTTCTAAC
519 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* *
487046 TCATATAT--TTAGAGGGACATAATCCATCC-TTGAATTACTATCATTGTCCACGCCAACCACAA
584 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
487108 ACATCCTTCACCATTTTCGTTACATCCAATCAACAACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
487148 CATAACCATACTTCTTTCATTTACAATCAACTTCAACTTCATTCTATCATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
487212 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * *
487277 AAAGCACTGCAAATTTCTTAATAGAATCAAGAT-GGGCAATCATATATATGATCTGAAACTAATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* *
487341 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGAGTAACCATCAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* *
487406 ATGACAAGTCATTTAATTGAATTAAATAGCATTTAGGTGATTGTTTTATTTTAATTGTTAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* *
487471 CTTCATATGGTGCCTATCAACTCTATAATTAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* ** * * * *
487536 GCATAAAAAACTCTTTGAAAGATTGCTTTCATTTTAATTCTTGGATTAGAACTGTATCAG-TACT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* *
487600 TGTAGGTCTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
456 TGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * * * * *
487665 TAGTGGGTCATGTTCCACCCTCTATCACTTCTATTCCCTCTTTAGTATATTATTGGTTCCAAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*** * *
487730 CATATATAGTTAGACATTCACAATCCACCCTTTG-ATATACTATCATTCTCCACGCCAACCACAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCACAA
*
487794 ACATCCTTCACCATTTTCGTTACATCCAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * ** * * *
487834 AATCAGCACAGTTCTTTCATTTACAATCCACGTCAACTTTGTTTTCTCATTTTCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * * * *
487899 ACACATATTTAAATATATATATTTCTCTTCTTATAATGTTGCTTGTATATTTTCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* *
487964 AAAGCACT--G-----C--A--AGAGTCAACATCGGGAAATCATATATATGATCCGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * * * * *
488018 ACCGAGGTCGTATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
* * * * *
488083 TTGACAAGTCATTGAATTGAATTAAATTGAAATTAGGTGATTGTTTTATTTTAAATGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * *
488148 CTTCATGTGGTGCCTATCAACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* * ** * *
488213 TCATAAGAAACTCTTTGAAAAATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * * * *
488278 TGTAGGTCTTGATGCCTTCATCCATATCATCTTGTTATAGTGTTGCTTCC-AGCTCTACTATAGC
456 TGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* *
488342 GAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGTTTTCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* *
488407 CATATAT--TTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTTCACGCCAACCACAAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* * *
488470 CATCCTTTACCATTTTCGTTACATCCAATC-ACAACTAT
650 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * * * *
488508 CATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTC-ATCATTTCCATTGCCTACAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
*
488572 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTAAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * *
488637 AAAGCACTGCGAAGTTCTTACTGGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* *
488702 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATAGGCAACCATTAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
*
488767 ATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTGTTTATTTTAATTGT-AAAAC
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGT-TTTATTTTAATTGTAAAAAC
*
488831 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGACCTTTT
325 TCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTT
* * *
488896 TGCATAAT-AACTCTTTGAATTATTTCTTTCATTTTAGTTCTTGGATTAAAACTCTATTGGTTTC
390 TGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTC
* * ** * * * * *
488960 TTGTCGGTCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATAT
455 TTGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAG
* * *
489025 CTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCGTCTTTAGTATATTTTTGGTTTCTAAC
519 CTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAC
* *
489090 TCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCTACGCCAACCACAA
584 TCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
489155 ACATCCTTCACCATTTTCGTTACATCCAATCAACAACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
** *
489195 CAGAACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
489259 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * *
489324 AAAGCACTGGGAATTTCTTAATAGAATCAAGAT-GGGCAATCATATATATCATCTGAAACTCATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* * * *
489388 ATCGAGATCATATCTTTATTCATCCATTTTCAATCTACATGGGTAACTATCAAAAGTTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
489453 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * **
489518 CTTCATATGGTGTCTATTAACACTATAAATAGGCACCTAAATGGCATTTGTACTAAGAACTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
* *
489583 GCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTATTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* *
489648 TATAAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAACTCTACTATAGC
456 TGT-AGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * *
489713 TAGTGGGTCACGTTCCACCCTCCATCACTTCAATTCTATCTTTAGTATATTGTTGGTTTCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
*
489778 CATATATAGTTAGAGGG-CACAATCCATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
585 CATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAA
* *
489842 CATCCTTCACTATTTTCCTTACATTCAATCAACCACTAT
650 CATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
489881 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTAT-TTTTCCATTACTTTCAT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * * *
489945 AAACATATTTAAATATACATATTTCCCTTATTATAACGTTGTTTGTACATTTCCAGTCTTCAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* *
490010 AAAGCACTGCGAATTTTCTTACTAGAATCAAGATC-GGACAATGATATATATGATCCAAAACTCA
131 AAAGCACTGCGAA-TTTCTTACTAGAATCAAGATCGGGA-AATCATATATATGATCCGAAACTCA
* * *
490074 TAATCGATATCATATCATTATT-AACCATTTTTAATCTACATGGGCAACCATCAAAAGGTTAGAA
194 TAATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAA
490138 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
259 GAATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAA
* ** * *
490203 CTCTTCATATGGTGTCTATCAACACTATAAATAGGCACCAACATGACATTTGTACTAAGACCTTT
324 CTCTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTT
*
490268 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTT
389 TTGCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTT
* * ** * * *
490333 CTTGTCGGTCTCGAA-TTTGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAAT
454 CTTGT-AGTCTTGAAGGCT-TCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTAT
* * *
490397 ATCTAGTGGGTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATAGTTGGTTTCTA
517 AGCTAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTA
*
490462 ACTCATATATAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
582 ACTCATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCAC
* *
490527 AAACATCCTTCACCATTTTCGTTACATCCAATCAACAACTAT
647 AAACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* *
490569 CATAACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTT-AT
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
* * *
490633 ACACATATTTAAATTTACATATTTTCCTTCTTATAACGTTGTTTGTAGATTTTCAGTCTTAAATC
66 ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
* * * * * *
490698 AAAGCACTGCAAATTTCTTAATATAATCAAGAT-GGGCAATCATATATATGATCTGAAACTAATA
131 AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
* *
490762 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGAGTAACCATCAAAAGGTTAGAAGA
196 ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
*
490827 ATGACAAGTCATTTAATTGAATTAAATTACATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
261 ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
* * * *
490892 CTTCATATGGTGTCTATCAACACTATAAATAGGCACCTACATGGCATTTATACTAAGACCTTTTT
326 CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
*
490957 GCATAATAAACTCTTTGAATTATTGCTTTCATTTAAGTTCTTGGATTAGAACTCTATCGGTTTCT
391 GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
* * *
491022 TATAGGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGC
456 TGTA-GTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGC
* * *
491087 TAGTGGGTAACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACT
520 TAGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACT
* * * * *
491152 CATATATAATTAGAGGG-AATAATCCAAT-CGTTGAATTACTATCATTGTCCATGCCAACCACAA
585 CATATATAGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAA
* *
491215 ACATCCTTCACCATTTTCATTACATTCAATCAACCACTAT
649 ACATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
* * *
491255 TATCACCACACTTCTTTCATTTACAATCCACTTGAACTTCATTCTATTATTTCCATTACCTTT-A
1 CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTA-CTTTCA
* * *
491319 TAAACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTTAGTCTTCAAT
65 TACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAAT
* * * *
491384 CCAAGCACT----A------A-GAGAATCAATATCGGTAAATCATATATATGATCCGAAACTCAT
130 CAAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCAT
* * * * *
491438 AACCGAGCTCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAG
195 AATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAG
* * * * *
491503 AATGACAAGTCATTGAATTGAATTAAATTGCAATTAGGTGATTGATTTA-ATTAAATGTAAAAAC
260 AATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAAC
491567 TCTTCAT
325 TCTTCAT
491574 CGGTTTCTTG
Statistics
Matches: 14852, Mismatches: 1395, Indels: 690
0.88 0.08 0.04
Matches are distributed among these distances:
650 27 0.00
651 9 0.00
652 8 0.00
653 76 0.01
654 20 0.00
655 91 0.01
656 23 0.00
657 160 0.01
658 370 0.02
659 203 0.01
660 146 0.01
661 164 0.01
662 203 0.01
663 74 0.00
664 164 0.01
665 31 0.00
666 67 0.00
667 143 0.01
668 129 0.01
669 198 0.01
670 174 0.01
671 120 0.01
672 304 0.02
673 394 0.03
674 445 0.03
675 542 0.04
676 435 0.03
677 879 0.06
678 568 0.04
679 692 0.05
680 968 0.07
681 968 0.07
682 512 0.03
683 659 0.04
684 1164 0.08
685 530 0.04
686 1015 0.07
687 1234 0.08
688 488 0.03
689 229 0.02
690 51 0.00
691 87 0.01
692 51 0.00
693 37 0.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.38
Consensus pattern (688 bp):
CATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATTTCCATTACTTTCAT
ACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATTTTCAGTCTTAAATC
AAAGCACTGCGAATTTCTTACTAGAATCAAGATCGGGAAATCATATATATGATCCGAAACTCATA
ATCGAGATCATATCATTATTCATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGA
ATGACAAGTCATTTAATTGAATTAAATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACT
CTTCATATGGTGCCTATCAACACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTT
GCATAATAAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCT
TGTAGTCTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCT
AGTGGGTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTC
ATATATAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAAC
ATCCTTCACCATTTTCCTTACATCCAATCAACCACTAT
Found at i:494335 original size:688 final size:688
Alignment explanation
Indices: 491915--495105 Score: 4766
Period size: 688 Copynumber: 4.7 Consensus size: 688
491905 TCCCTTCTTG
** * * *
491915 CATTTTCAATCTACATGGACAACCATC-AAAGTGTAAGAAGAATGAAAAGTCATTTAATTAAATT
1 CATTTTCAATCTACATGGGTAACCATCAAAAG-GTTAGAAGAATGACAAGTCATTTAATTGAATT
* * *
491979 AAATTTG-ATTTAGGTCATTGATTTATTTTAATTGTAATAAA-TCTTCATATGATGCCTATCAAC
65 AAA-TTGCATTTAGGTGATTGTTTTATTTTAATTGTAA-AAACTCTTCATATGGTGCCTATCAAC
* * * * * *
492042 ACTATAAATAGGCTCCTCCATGGCACTTGTACTAAGACCATTTTGCATAATAAACTCTTTGAATT
128 ACTATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAA-A
* * ** *
492107 A-TTGCTTTCATTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTTGGTCTTGAATTCGTCA
192 AGTTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCA
** * * * *
492171 TCCATTTCATCTTGTTATAGATTTGGTTCTTAGCTCTGCAATAGCTAGTGGGTCACGTTCCAACC
257 TCCATTTCATCTTGTTATAGCGTTGGTTC-CAGCTCTACTATAGCTAGTGGGTCACGTTCCACCC
*
492236 TCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCA
321 TCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCA
* **
492301 CAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTAACCATTTTCCTT
386 CAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTT
*
492366 ACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTAGAATCCACTTCAACTTCATTCTA
451 ACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTA
* * *
492431 TCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGT
516 TCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGT
*
492496 ACATTTTCAGTCTAAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATAT
581 ACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATAT
*
492561 ATATGATCTGAAACACATAATCGAGATCATATCATTATTCATC
646 ATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATC
*
492604 CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAGTTGAATTA
1 CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
*
492669 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* *
492734 ATAAATAGGCACCTTCATGGCATTTGTACTAAGAACTTTTTGCATAAAAAACTCTTTG-AAAGAT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAG-T
* * *
492798 TGCTTTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGCCTTCATCC
195 TGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCC
* * *
492862 ATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGGTCACGTTCCACTCTCT
260 ATTTCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCT
* * * * * ***
492927 ATCACTTCGACTCCCTCTTTAGTATATTATTGGTTCCTAACTCATATATATTTAGACATTCACAA
324 ATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAA
* * *
492992 TCCACCCTTTAAATTACTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACA
389 TCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACA
* * * * ** * *
493057 TCCAATCAACCACTATCATCAGCACAATTCGTTCATTTACAATCCACGTCAACTTTGTTTTCTCA
454 TCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCA
* * * *
493122 TTTTCATTACTTTCATACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGTTTGTACA
519 TTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA
* * * **
493187 TTTTCAGTCTTCAATAAAAGCACTGC---G--------AGAATCAATATCGGTAAATCATATATA
584 TTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATA
* * **
493241 TGATCCGAAACTCATAACCGATCTCATATCATTATTCATC
649 TGATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* * * * *
493281 CATTTTCAATCTACATGGGTAACCATTAAAGGGTAAGAAGAATGACATGTCATTGAATTGAATTA
1 CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
* * *
493346 AATTGCAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * *
493411 ATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTT-CATAAGAAACTCTTTGAAAAATT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAGTT
* * *
493475 GCATTCATTTTAGTTCTTGGATTAGAACTCCATCGGTTTCTTGTAGGTCTTAAAGCCTTCATCCA
196 GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
* * *
493540 TATCATCTTGTTATAGCGTTGGTTCCAACTCTACTATAGCGAGTGGGTCACGTTCCACCCTCTAT
261 TTTCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTAT
*
493605 CACTTCGATTCCATCTTTAGTATATTGATGGTTTCTAACTCATATATAGTTAGAGGGTCACAATC
326 CACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATC
* *
493670 CATCCTTTAAATTATTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACATC
391 CATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACATC
* *
493735 CAATCAACCACTGTCATCACCACACTTCTTTCATTTACAATCCACTACAACTTCATTCTATCATT
456 CAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATT
*
493800 TCCATTACCTACATACACATATTTAAATACACATATTTCCCTTCTTATAACGTTGTTTGTACATT
521 TCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATT
*
493865 TTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGATCGGGCAATCATATATATG
586 TTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATATG
493930 ATCTGAAACTCATAATCGAGATCATATCATTATTCATC
651 ATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* * * *
493968 CATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAAAATAACAAGTCATTGAATTGAATTA
1 CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
* ** *
494033 AATTGCAATTAGGTTTTTGTTTTATTTTAATTGTAAAAACTCTTCATGTGGTGCCTATCAACACT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * ** * *
494098 ATAAATAGGCACCTCCACGACATTTGTTTTATGAACTTTTTTCATAAGAAACTCTTTGAAAAGTT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAGTT
* *
494163 GCATTCATTTTAGTTCTTGGATTAGAACTCCATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
196 GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
* * *
494228 TATCATCTTGTTAAAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCATGTTCCACCCTCTAT
261 TTTCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTAT
* * *
494293 CACTTTGATTCCATCTTTAGTATATTGTTGGTTTATAACTCATATATATTTAGAGGGTCACAATC
326 CACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATC
* * *
494358 CATTCTTTGAATTACTATCATTGTCCACGCCAACCACAAAAATCCTTCACCATTTTCGTTACATC
391 CATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACATC
* * *
494423 CATTCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTATCATT
456 CAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATT
*
494488 TCCATTACCTACATACACATATTTAAATATACATATTTCCCTTGTTATAACGTTGTTTGTACATT
521 TCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATT
* * *
494553 TTCAGTCTTAATTCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATTGTGCAATCATATATATG
586 TTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATATG
494618 ATCTGAAACTCATAATCGAGATCATATCATTATTCATC
651 ATCTGAAACTCATAATCGAGATCATATCATTATTCATC
* * *
494656 CATTTTCAATCTACATGGGTAACCATAAAAATGTTGGAAGAATGACAAGTCATTTAATTGAATTA
1 CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
*
494721 AATTGCATTTAGGGGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
66 AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
* * *
494786 ATAAATAGGCACCTCTATGGCATTTGTACTAAGAACTTTTTGCATAATAAACTCATTG-AAAGAT
131 ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAG-T
* * *
494850 TGCTTTCATTTTAGTTCTTGGATTAGAACTGTGTCGG-TACTTGTAGGTCTTGAAGCCTTCATCC
195 TGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCC
* * *
494914 ATTTTATCTTGTTATAACGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCAACCCTCT
260 ATTTCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCT
* * * ***
494979 ATCACTTCGATTCCCTCTTTAGTATATTATTGGTTCCTAACTCATATATAGTTAGACATTCACAA
324 ATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAA
* * *
495044 TCCACCCTTTGAATTATTATCATTCTCCACGCCAACCACAAACATCCTTCACCATTTTTGTT
389 TCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTT
495106 GTTTGTACAT
Statistics
Matches: 2259, Mismatches: 221, Indels: 45
0.89 0.09 0.02
Matches are distributed among these distances:
676 339 0.15
677 270 0.12
679 1 0.00
685 1 0.00
687 272 0.12
688 1178 0.52
689 194 0.09
690 4 0.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (688 bp):
CATTTTCAATCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTA
AATTGCATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACT
ATAAATAGGCACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAGAAACTCTTTGAAAAGTT
GCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATCCA
TTTCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCTAT
CACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACAATC
CATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTTGTTACATC
CAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCATT
TCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACATT
TTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGATCGGGCAATCATATATATG
ATCTGAAACTCATAATCGAGATCATATCATTATTCATC
Found at i:497573 original size:688 final size:687
Alignment explanation
Indices: 495142--499411 Score: 6144
Period size: 688 Copynumber: 6.3 Consensus size: 687
495132 AAGCACTGTG
* ** * * *
495142 AGAATCAATATCGGTAAATCATATATA--ATCCGAAACTCATAACCAAGCTCATATCATTATTCA
1 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
* * * *
495205 TCCA-TTTGAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTC-----ATTGAAT
66 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
*
495264 TAAATTGCAATTAGGTGATTGTTTTATTTTAAA-TGTAAAAACTCTTCATGTGGTGCCTATCAAC
131 TAAATTGCAATTAGGTGATTGTTTTA-TTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAAC
* * * * *
495328 TCTATAAATAGGCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAGAAACTCTTTGAAAA
195 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTT-AAAA
* * *
495393 -ATTTCATTCATTTTAGTTCTTGGATTAGAACTGTATCGGTTTCTTGTAGGTCTTGAAGCCTTCA
259 GATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCA
* *
495457 TCCATATTATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACTTTCCACCCT
324 TCCATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCT
495522 CTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCAC
389 CTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCAC
* *
495587 AATCCATCCTTTTAATTACTATCATTGTCCACGCCAACCACAAACATCCTTTACCATTTTCGTTA
454 AATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTA
* * *
495652 CATCCAAGCAACCACTATTATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTAT
519 CATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
* *
495717 CATTTCCATTAACTACATACAAATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
584 CATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
*
495782 CATTTTCAGTCTTATATCAAAGCACTGCGAAGTTCTTACT
649 CATTTTCAGTCTTAAATCAAAGCACTGCGAA-TTCTTACT
*
495822 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCA
1 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
495887 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
66 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
*
495952 TAAATTGCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTGATATGGTGCCTATCAACA
131 TAAATTGCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACA
* *
496017 CTATAAATAGGCACCTCCACGACATTTGTACTAATAAATTTTTTCATAATAAACTCTTTAAAAGA
196 CTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTTAAAAGA
* * *
496082 TTGCTTTCATTTTACTTCTTGGATTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGCCTTCATC
261 TTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATC
* *
496146 CATTTTATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
326 CATATCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
* * * * ***
496211 TATCACTTCTATTCCTTCTTTAGTATATTATTGCTTCCTAACTCATATATAGTTAGACATTCACA
390 TATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACA
* * * *
496276 ATCTACCCTTTG-ATATACTATCATTCTCCATGCCAACCACAAACATCCTTCACCATTTTCGTTA
455 ATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTA
* * * * * ** * *
496340 CATCCAATCAACTACTATCATCAGCATAGTTCTTTCATTTATAATCCACGTCAACTTTGTTTTCT
519 CATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
* * * *
496405 CATTTTCATTACTTTCATACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGTTTGTA
584 CATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
* * *
496470 TATTTTCAGTCTTCAATCAAAGCACTGCGAGAGTC--A--
649 CATTTTCAGTCTTAAATCAAAGCACTGCGA-ATTCTTACT
* * * * *
496506 A-CATC--GAT----AAATCATATATATGATCCGAAACTCATAACCGAGGTCGTATCATTATTCA
1 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
* * * *
496564 TCCATTTTCAATCTACATGGGCAACCATTAAAGGGTAAGAAGATTGACAAGTCATTGAATTGAAT
66 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
* * *
496629 TAAATTGAAATTAGGTGATTGTTTTATTTTAAA-TGTAAAAACTCTTCATGTGGTTCCTATCAAC
131 TAAATTGCAATTAGGTGATTGTTTTA-TTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAAC
* * *
496693 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAGAAACTCTTTGAAAA
195 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTT-AAAA
* * *
496758 -ATTGCATTCATTTTAGTTTTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTAAAGCCTTCA
259 GATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCA
* * *
496822 TCCATATCATCTTGTTATAGCGTTGGTTCCAGCTATACTATCGCGAGTGGGTCACGTTCCACCCT
324 TCCATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCT
* *
496887 CTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCAT
389 CTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCAC
*
496952 AATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTTACCATTTTCGTTA
454 AATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTA
* *
497017 CATCCAATCAACAACTATCATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTAT
519 CATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
497082 CATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
584 CATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
497147 CATTTTCAGTCTTAAATCAAAGCACTGCGAACTTCTTACT
649 CATTTTCAGTCTTAAATCAAAGCACTGCGAA-TTCTTACT
*
497187 AGGATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
1 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
* *
497252 TCCATTTTCAATCTACATGGGAAACCATAAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
66 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
* *
497317 TAAATTGCAATTAGGTGATTGTTTTATTTAAATTGCAAAAACTCTTGATATGGTGCCTATCAACA
131 TAAATTGCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACA
* * *
497382 TTATAAATAGGCAACTCCACGACATTTGTACTAATAAATTTTTGCATAATAAACTCTTTAAAAGA
196 CTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTTAAAAGA
* * * * *
497447 TTGCTTTCAATTTAGTTCTTGGCTTAGAACTGTATCGG-TACTTGTAGGTCTTGAAGTCTTCATC
261 TTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATC
* * *
497511 CATTTTACCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
326 CATATCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
* * * * ***
497576 TATCACTTCTATTCCCTCTTTAGTATATTATTGCTTCCTAACTCATATATAGTTAGACATTCACA
390 TATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACA
* * * *
497641 ATCCACCCTTTG-ATATACTATCATTCTTCATGCCAACCACAAACATCCTTCACCATTTTCGTTA
455 ATCCATCCTTTGAAT-TACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTA
* * * * * ** * *
497705 CATCCAATCAACCACTATCATCAGCACAGTTCTTTCATTTATAATCCACGTCAACTTTGTTTTCT
519 CATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
* * * *
497770 CATTTTCATTACTTTCATACACATATTTAAATATACATATTTCTCTTCTTATAACGTTGTTTGTA
584 CATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
* *
497835 TATTTTCAGTCTTCAATCAAAGCACTGCG----------
649 CATTTTCAGTCTTAAATCAAAGCACTGCGAATTCTTACT
* * ** * *
497864 AGAGTCAACATCGGTAAATCATATATATGAT-TCGAAACTCATAACCGAGGTCGTATCATTATTC
1 AGAATCAAGATCGGGCAATCATATATATGATCT-GAAACTCATAACCGAGATCATATCATTATTC
* ** * * *
497928 ATCCATTTTCAATCTACATGGGCAACCATTAAGGGGTAAGTAGATTG-CAAGTCATTGAATTGAA
65 ATCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAA
* *
497992 TTAAATTCCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTGATATGGTGCCTATCAAC
130 TTAAATTGCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAAC
* *
498057 ACTATAAATAGGCACCACCACGACATTTGTACTAATAAATTTTTGCATAATAAACTCTTTAAAAG
195 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTTAAAAG
* *
498122 ATTGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGTCTTGAAGCCTTCAT
260 ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCAT
* * *
498187 CCATATCATCTTGTTAAAGCGTTGGTTCCAGCTCTACTATTGATAGTGGGTCACGTTCCACCCTC
325 CCATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTC
*
498252 TATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCACA
390 TATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACA
*
498317 ATCCATCCTTTGAATTACTATCAATGTCCACGCCAACCACAAACATCCTTCACCA-TTTCGTTAC
455 ATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTAC
*
498381 ATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCTATC
520 ATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATC
* *
498446 ATTTCCATTACCTACATAAACATATTTAAATATACATATTTCCCTTCTTATAACATTGTTTGTAC
585 ATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTAC
*
498511 ATTTTCAGTCTAAAATCAAAGCACTGCGAAGTTCTTACT
650 ATTTTCAGTCTTAAATCAAAGCACTGCGAA-TTCTTACT
* **
498550 AGAATCAGGATC-GGCAATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCA
1 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
* * *
498614 TCCATTTTCAATCTAGATGGGCAAGCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAAT
66 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
* * *
498679 TAAATTAC-ATCTAGGTGATTGTTTTATTTTAATTGT-AAAACTCTTCATATGGTTCCTATCAAC
131 TAAATTGCAAT-TAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAAC
* * * ** * * **
498742 ACTATAAATAGGCACCTCAATGGCATTTGTACTAAGACCTATTTGCATAATAAACTCTTTGAATT
195 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTTAAAAG
* * ** * ** *
498807 ATTGCTTTCTTTTTAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTCCGTCTCGAATTCGTCAT
260 ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCAT
* * * * *
498872 CCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATATCTAGTGGGTCACGTTCCACCCT
325 CCATATCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCCT
* * * * * *
498937 CTGTTACTTTGATTCCATATTTAGTATATTGTTGGTTTCTAACTCATATATAGTTAGAGGGTCAT
389 CTATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCAC
499002 AATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTA
454 AATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTA
* *
499067 CATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
519 CATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTAT
*** *
499132 CATTTCCATTA-CTTTGTACACATATTTAAATTTACATATTTCCCTTCTTATAACGTTGTTTGTA
584 CATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTA
* *
499196 GATTTTCAGTCTTAAATCAAAGCACTGCGAATTTCTTAAT
649 CATTTTCAGTCTTAAATCAAAGCACTGCGAA-TTCTTACT
* * * *
499236 AGAATCAAGATTGGGCAAACATATATATGATATGAAACTCATAATCGAGATCATATCATTATTCA
1 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
* * * *
499301 TCCATTTTCGATCTACATGAGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAAT
66 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
* * *
499366 TAAATTACATTTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTT
131 TAAATTGCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTT
499412 TGAATTATTG
Statistics
Matches: 3205, Mismatches: 330, Indels: 102
0.88 0.09 0.03
Matches are distributed among these distances:
675 148 0.05
676 316 0.10
677 687 0.21
678 62 0.02
679 1 0.00
680 24 0.01
681 4 0.00
682 39 0.01
683 47 0.01
684 4 0.00
685 244 0.08
686 297 0.09
687 346 0.11
688 985 0.31
689 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (687 bp):
AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAACCGAGATCATATCATTATTCA
TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
TAAATTGCAATTAGGTGATTGTTTTATTTAAATTGTAAAAACTCTTCATATGGTGCCTATCAACA
CTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAATAAACTCTTTAAAAGA
TTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTTCATC
CATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCT
ATCACTTCGATTCCATCTTTAGTATATTATTGGTTTCTAACTCATATATAGTTAGAGGGTCACAA
TCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTTCACCATTTTCGTTACA
TCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTTCAACTTCATTCTATCA
TTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTATAACGTTGTTTGTACA
TTTTCAGTCTTAAATCAAAGCACTGCGAATTCTTACT
Found at i:500722 original size:688 final size:689
Alignment explanation
Indices: 499404--503446 Score: 6029
Period size: 687 Copynumber: 5.9 Consensus size: 689
499394 TTAATTGTAA
** *
499404 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTATAGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
499469 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
499534 TCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
* *
499599 AGTTAGAGGG-CACAATCCAAT-CGTTGAATTACTATCATTGTCCACGCCAACCACAAACATCTT
196 AGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * * *
499662 TCACCATTTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACT
260 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACT
* * * *
499727 TGAACTTCATTGTATTATTTCCATTACCTTCATAAACATATTTAAATATACATATTTCCCTTCTT
325 TCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTT
* * * *
499792 ATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTGTT-TTACTAGAATCAA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA--GTTCTTAATAGAATCAA
** * * *
499856 GATCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTT
453 GATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTT
* * * * * *
499921 CAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTGC
518 CAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTAC
* * **
499986 AATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCATTACTATAAAT
583 AATTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAAT
* * *
500051 AGGCTCCTCCACGACATTTGCACTAA-AATTTTTTTCATAAG
648 AGGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
* * * *
500092 AAACTCTTTGAAAAATTGCATTCATTTTACTTCTTGGATTAAAACTCTATCGGTTTCTTGTCGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
** * * *
500157 CTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
500222 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*
500287 AGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * *
500352 AACCATTTTCGTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
261 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
* *
500417 CAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTA
326 CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
* * *
500482 TAACGTTGTTTGTAAATTTTCAGTCTAAAATCAATGCACTGCGAAGTTCTTAATAGAATCAAGAT
391 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
*
500547 TGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * * *
500612 TCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAAT
*
500677 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * *
500742 CACCTCCATGGCATTTGTACTAAGAACTTTTTTCATAAA
651 CACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
* * * * *
500781 AAACTCTTTCAAAGATTGCTTTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTGTAGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* *
500845 CTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTCCTTGCTCTACTATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * * * *
500910 TCACGTTCCACCCTCTAGCACTTCGATTCCCTCTTTAATATTTTATTGGTTCCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * *
500975 AGTTAGACATTCACAATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * * *
501040 CACCATTTTTGTTACATCCAATCAACCACTATCATCAGCAAAGTTCTTTCATTTACAATCCACGT
261 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
** * * * *
501105 CAACTTTGTTTTCTCATTTTCATTA-CTTCCATACACATATTTAAATATACATATTTCTC-TCTT
326 CAACTTCATTCTATCATTTCCATTACCTT-CATACACATATTTAAATATACATATTTCCCTTCTT
* *
501168 ATAACGTTGTTTGTACATTTTCAGTCTTCAATCAAAGCACT---AAG--------AGAATCAATA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGA
** * * *
501222 TCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTTCA
455 TCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
* * * *
501287 ATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAA
520 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAA
* *
501352 TTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAG
585 TTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
* * *
501417 GCAACTCAACGACATTTGTACTAAGAAC-TTTTTCGTAAG
650 GCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
* * *
501456 AAACTCTTTGAAAAATTGCATTCA-TTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGC
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * * *
501520 CTTGAAGCCTTCATCCATATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTAGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
501584 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGATGGTTTATAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*
501649 AGTTAGAGGGTCACAATCCATCCTTTGAATTATTATCATTGTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* *
501714 CACCATTTTTGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACTT
261 CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
*
501779 CAACTTCATTCTATCATTTCCATTACCTACATACACATATTTAAATATACATATTTCCCTTCTTA
326 CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
* *
501844 TAACGCTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
391 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
*
501909 CAGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
501974 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAAT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAAT
* * * * *
502039 TAGGTGATTATTTTATTTAAATTGTAAAAAATCATGATATGGTGCCTAT-AACACTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * * * *
502103 CACCACCACGACATTTGTACTAATAAATTTTTGCATAAT
651 CACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
*
502142 AAACTCTTT-AAAAGATTGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGG
1 AAACTCTTTGAAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGG
* * * * *
502206 TCTTGAAGCCTTCATCCATATCATCTTGTTAAAGCGTTGGTTCC-AGCTGTACTATTGATAGTGG
65 TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
502270 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
130 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
*
502335 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCAATGTCCACGCCAACCACAAACATCCT
195 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
*
502400 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACT
260 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACT
* *
502465 TCAACTTCATTCTATCATTTCCATTACCTACATAAACATATTTAAATATACATATTTCCCTTCTT
325 TCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTT
* * * * *
502530 ATAACATTTTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACTAGAATCAGGA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGA
**
502595 TC-GGCAATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCATCCATTTTCA
455 TCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
* *
502659 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATTACAAGTCATTTAATTGAATTAAATTAC-A
520 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAA
*
502723 TCTAGGTGATTATTTTATTTTAATTGT-AAAACTCTTCATATGGTGCCTATCAACACTATAAATA
585 T-TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATA
* * * * * * *
502787 GGCACCGCCATGGCATTTGTACTAAGACCTATTTGCATAAT
649 GGCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
** * **
502828 AAACTCTTTGAATTATTGCTTTC-TTTTAAGTTCTTGGATTAAAACTCTATCGGTTTCTTGTCCG
1 AAACTCTTTGAAAAATTGCTTTCATTTT-AGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGG
* ** * * * * *
502892 TCTCGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCAACAATATCTAGTGG
65 TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
* *
502957 GTTACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
130 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
*
503022 TAGTTAGAGGGTCATAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
195 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * *
503087 TCACCATTTTAGTTACATCCAATCAACAACTATCATAACCATACTTCTTTCATTTACAATCCACT
260 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACT
** *
503152 TCAACTTCATTCTATCATTTCCATTA-CTTTGTACACATATTTAAATTTACATATTTCCCTTCTT
325 TCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTT
* * *
503216 ATAACGTTGTTTGTAGATTTTCAGTCTTAAATCAAAGCACTACGAATTTCTTAATAGAATCAAGA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGA
* * * *
503281 TTGGGCAAACATATATATGATATGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCG
455 TCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
* * * * *
503346 ATCTACATGAGTAACCATCAAAAGGTTAGAAGAATGAGAAGTCATTTAATTGAATTAAATTACAT
520 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAA
503411 TTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTT
585 TTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTT
503447 TGAATTATTG
Statistics
Matches: 3043, Mismatches: 282, Indels: 60
0.90 0.08 0.02
Matches are distributed among these distances:
674 267 0.09
675 125 0.04
676 213 0.07
678 3 0.00
684 3 0.00
685 67 0.02
686 569 0.19
687 825 0.27
688 702 0.23
689 269 0.09
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (689 bp):
AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
CACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTCATTTACAATCCACTT
CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTAATAGAATCAAGAT
CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTACAAT
TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
CACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
Found at i:504757 original size:688 final size:689
Alignment explanation
Indices: 503439--507821 Score: 6586
Period size: 688 Copynumber: 6.4 Consensus size: 689
503429 TTAATTGTAA
** * *
503439 AAACTCTTTGAATTATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCTGTTTCTTATAGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
503504 CTTGAAGGCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCTTAACTCTACTATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
503569 TCACGTTCCACCCTCCATCACTTCGATTCTATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
* * *
503634 AGTTAGAGGG-CATAATCCAAT-CGTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCT
196 AGTTAGAGGGTCACAATCC-ATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* *
503697 TCACCATTTTCCTTACATTCAATCAACCACTATTATCACCACACTTCTTTCATTTACAATCCACT
260 TCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
* *
503762 TGAACTTCATTCTATTATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTT
325 TCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTT
* * *
503827 ATAACGTTGTTTGTACATTTCCAGTCTTCAATCAAAGTACTGCGAATTGTT-TTACTAGAATCAA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAA--GTTCTTACTAGAATCAA
** * * *
503891 GATCGGTAAATCATATATATGATCCGAAACTCATAACCGAGCTCATATCATTATTCATCCATTTT
453 GATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTT
* * * * *
503956 CAATCTACATGGGCAACCATTAAAGGGTAAGAAGAATCAAAAGTCATTGAATTGAATTAAATTGC
518 CAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGC
* * **
504021 AATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCATTACTATAAAT
583 AATTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAAT
* *** *
504086 AGGCACCTCCACGACATTTGCACTAA-TTTTTTTTTCATAAG
648 AGGCACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
* * * * *
504127 AAACTCTTTGAAAAATGGCATTCATTTTACTTCTTGGATTAAAACTCTATCGGTTTCTTGTCGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
** * * *
504192 CTTGAATTCGTCATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
504257 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*
504322 AGTTAGAGGGTCACAATCCATCCATTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* *
504387 AACCATTTTCCTTACATTCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
261 CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
* *
504452 CAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTCTTA
326 CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
* * * * *
504517 TAACGTTGTTTGTAAATTTTCAGACTAAAATCAATGCACTGCGAAGTTCTTAATAGAATCAAGAT
391 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
* *
504582 TGGGCAATCATATATATGATTTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * *
504647 TCTACATGGGTAACCATCAAAAGGTTAGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
* *
504712 TAGGTTATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACTCTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * *
504777 CACCTCCATGGCATTTGTACTAAGAACTTTTTGCATAAA
651 CACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
* * * *
504816 AAACTCTTTGAAAGATTGCTTTCATTTTAATTCTTGGATTAGAACTGTATCGG-TACTTGTAGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
504880 CTTGAAGCCTTCATCCATTTTATCTTGTTATAGCGTTGGTTTCTTGCTCTACTATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * *
504945 TCACGTTCCACCCTCTATCACTTCGATTCCCTCTTTAATATATTATTGGTTCCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * *
505010 AGTTAGACATTCACAATCCACCCTTTGAATTACTATCATTCTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* * * * *
505075 CACCATTTTCGTTACATCCAATCAACCACTATCATCAGCACAGTTCTTTCTTTTACAATCCACGT
261 CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
** * * * *
505140 CAACTTTGTTTTCTCATTTTCATTA-CTTCCATACACATATTTAAATATACATATTTCTCTTCTT
326 CAACTTCATTCTATCATTTCCATTACCTT-CATACACATATTTAAATATACATATTTCCCTTCTT
* * *
505204 ATAACGTTGTTTGTACATTTTCAGTCTTCAAT-AAA--A--GC--A---C-TACGAGAATCAATA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGA
** * * *
505258 TCGGTAAATCATATATATGATCCGAAACTCATAACCGAGTTCATATCATTATTCATCCATTTTCA
455 TCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
* * *
505323 ATCTACATGGGCAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAA
520 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAA
* *
505388 TTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATCAACACTATAAATAG
585 TTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
* *
505453 GCAACTCAACGACATTTGTACTAAGAACTTTTT-CATAAG
650 GCACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
* *
505492 AAACTCTTTGAAAAATTGCATTCA-TTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * * *
505556 CTTGAAGCCTTCATCCATATCATCTTGTTATAGCGTTGGTTCC-AACTCTACTATAGCGAGTAGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* *
505620 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGATGGTTTCTAAGTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
* *
505685 AGTTAGAGGGTCACAATCCATCCTTTGAATTATTATCATTGTCCATGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
** * *
505750 CACCATTTTTGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACTT
261 CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
* * *
505815 CAACTTCATTCAATCATTTCCATTGCCTACATACACATATTTAAATATACATATTTCCCTTCTTA
326 CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
* *
505880 TAACGCTGTTTGTACATTTTAAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
391 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
505945 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
506010 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
* * *
506075 TAGGTGATTATTTTATTTAAATTGTAAAAACTCTTGATATGGTGCCTATCAACACTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * * *
506140 CACCACCACGACATTTGTACTAATAAATTTTTGCATAAT
651 CACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
*
506179 AAACTCTTT-AAAAGATTGTTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGG
1 AAACTCTTTGAAAA-ATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGG
* * * *
506243 TCTTGAAGCCTTCATCCATATCATCTTGTTAAAGCGTTGGTTCC-AGCTCTACTATTGATAGTGG
65 TCTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGG
* *
506307 GTCACGTTCCACCCTCTGTCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAAGTCATATA
130 GTCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATA
*
506372 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCAATGTCCACGCCAACCACAAACATCCT
195 TAGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCT
* * *
506437 TCACCATTTTCGTTACATCCAATCAACCACTATCATCACCATACTTCTTTTATTTACAATCCACT
260 TCACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACT
* * *
506502 TCAACTACATTCTATCATTTCCATTACCTACATAAACATATTTAAATATACATATTTCCCTTCTT
325 TCAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTT
* * *
506567 ATAACATTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTCACTAGAATCAGGA
390 ATAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGA
**
506632 TC-GGCAATCATATATATGATCTGAAACTCATAAGAGAGATCATATCATTATTCATCCATTTTCA
455 TCGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCA
* * *
506696 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAGGTCATTTAATTGAATTAAATTGCAT
520 ATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAA
*
506761 TTAGGTGATTGTTTTATTTTAATTGT-AAAACTCTTCATGTGGTGCCTATCAACACTATAAATAG
585 TTAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAG
*
506825 GCACCTCCACGACATTTGTACTAAGAACTTTTTTCATAAG
650 GCACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
** * * * *
506865 AAACTCTTTGAAAAATTGAATTCATTTTAGTTCTTGGATTAAAACTCTATCTGTTTCTTGTCGAT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
** * * * *
506930 CTTGAATTCGTAATCCATTTCATCTTGTTATAGCTTTGGTTCCTAGCTCTACAATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
*
506995 TCACGTTCCACCCACTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
* *
507060 AGTTAGAGGGTCACAATCCATCCTTGGAATTACTATCATTGTCCACGCCAACCAAAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
* *
507125 AACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCATTCATTTACAATCCACTT
261 CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
* * *
507190 CAACTTCATTCTATCGTTTCCATTACTTTCATACACATATTTAAATATACATATTTCCCTTGTTA
326 CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
* * *
507255 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCGTAATAGAATCAA-AT
391 TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
* * *
507319 TGTGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTGAA
456 CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
* * * * * *
507384 TCTACATAGGTAACCATCAAAATGTTGGAAGAATGACAAGTCATTTAATTGAATTAAATTGCATT
521 TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
* *
507449 TAGGGGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAATACTATAAATAGG
586 TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
* * * *
507514 CACCTCTATGGCATTTGTACTAAGAACTTTTTGCATAAT
651 CACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
* * * * *
507553 AAACTCATTGAAAGATTGCTTTCATTTTAGTTCTTGGATTAGAACTGTATCGG-TACTTGTATGT
1 AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
* * *
507617 CTTGAAGCCTTCATCCATTTTATCTTGTTATAACGTTGGTTCCTAGCTCTATTATAGCTAGTGGG
66 CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
* * * * *
507682 TCACATTCCACCCTCTATCACTTCGTTTCCCTCTTTAGTATATTATTGGTTCCTAACTCATATAT
131 TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
*** * * *
507747 AGTTAGACATTCACAATCCACCCTTTGAATAACTATCATTCTCCACGCCAACCACAAACATCCTT
196 AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
507812 CACCATTTTC
261 CACCATTTTC
507822 GTTGTTTGTA
Statistics
Matches: 3339, Mismatches: 331, Indels: 51
0.90 0.09 0.01
Matches are distributed among these distances:
675 298 0.09
676 82 0.02
677 218 0.07
678 2 0.00
680 2 0.00
681 1 0.00
682 1 0.00
683 2 0.00
685 2 0.00
686 389 0.12
687 827 0.25
688 1248 0.37
689 267 0.08
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (689 bp):
AAACTCTTTGAAAAATTGCTTTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGT
CTTGAAGCCTTCATCCATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGG
TCACGTTCCACCCTCTATCACTTCGATTCCATCTTTAGTATATTGTTGGTTTCTAACTCATATAT
AGTTAGAGGGTCACAATCCATCCTTTGAATTACTATCATTGTCCACGCCAACCACAAACATCCTT
CACCATTTTCCTTACATCCAATCAACCACTATCATCACCACACTTCTTTCATTTACAATCCACTT
CAACTTCATTCTATCATTTCCATTACCTTCATACACATATTTAAATATACATATTTCCCTTCTTA
TAACGTTGTTTGTACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACTAGAATCAAGAT
CGGGCAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCATCCATTTTCAA
TCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAATTAAATTGCAAT
TAGGTGATTGTTTTATTTTAATTGTAAAAACTCTTCATATGGTGCCTATCAACACTATAAATAGG
CACCTCCACGACATTTGTACTAAGAACTTTTTGCATAAG
Found at i:509249 original size:688 final size:687
Alignment explanation
Indices: 507861--509308 Score: 2240
Period size: 688 Copynumber: 2.1 Consensus size: 687
507851 AAGCACTGCG
* * ** * * *
507861 AGAATCAATATCGGTAAATCATATATATGATCCAAAACTCATAACCGAGCTCATATAATTAATTA
1 AGAATCAAGATCGGGAAATCATATATATGATCTGAAACTCATAATCGAGATC--AT-A-TCATTA
* * *
507926 TTTATCCATTTTCAATCTACATGGGAAACCATTAAAGGGTAAGAAGAATGACAAGTCATTGAATT
62 TTCATCCATTTTCAATCTACATGGGAAACCATCAAAAGGTAAGAAGAATGACAAGTCATTGAATT
* *
507991 GAATTAAATTGCAATTAGGTGATTGTTTTATTTTAAATGTAAAAACTCTTCATGTGGTGCCTATC
127 GAATTAAATTGCAATTAGGTGATTGTTTTATTTTAAATGTAAAAACGCTTCATATGGTGCCTATC
* * * * *
508056 AACTCTATAAATAGGCACCTCCATGACATTTGTACTAAGAACTTTTTTCATAAGAAACTCTTTGC
192 AACACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAAGAAACTCTTTGA
* *
508121 AAAATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCGGTTTCTTGTAGGTCTTGAAGCCTT
257 AAAATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGTCTTGAAACCTT
*
508186 CATCCATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACC
322 CATCAATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACC
* * *
508251 CTCTATAACTTCGATTCTATCTTTAGTATATTACTGGTTTCTAACTCATATATAGTTAGAGGGTG
387 CTCTATAACTTCGATTCTATCTTTAGTATATTACTGGTTCCTAACCCATATATAGTTAGAGGGTC
* * *
508316 ACAATCCATCCTTTTAATTACTATCATTGTTCACGCCAACCACAAACATCCTTCACTATTTTCGT
452 ACAATCCATCCTTTGAATTACTATCATTCTTCAC-CCAACCACAAACATCCTTCACCATTTTCGT
* * * *
508381 TACATCCAAGCAACCACTATTATCACCATACTTCTTTTATTTACAATCCACTTCAACTTCATTCT
516 TACATCCAAGCAACCACTATCATCACCACACTTCTTTCATATACAATCCACTTCAACTTCATTCT
* *
508446 ATCATTTCCATTACCTACATACAAATATTTAAATATACATATTTCCCTTGTTATAACGTTGTTTG
581 ATCATTTCCATTACCTACATACAAATATTTAAATATACATATTTCCCGTCTTATAACGTTGTTTG
*
508511 TACATTTTCAGTCTTAAATCAAAGCACTGCGAAGTTCTTACT
646 TACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACT
* *
508553 AGAATCAAGATCGGGCAATCATATATATGATCTGAAACTCATAATCGAGTTCATATCATTATTCA
1 AGAATCAAGATCGGGAAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCA
* *
508618 TCCATTTTCAATCTACATGGGCAACCATCAAAAGGTTAGAAGAATGACAAGTCATTGAATTGAAT
66 TCCATTTTCAATCTACATGGGAAACCATCAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAAT
*
508683 TAAATTGCAATTAGGTGATTGTTTTA-TTTAAATTGTAAAAACGCTTGATATGGTGCCTATCAAC
131 TAAATTGCAATTAGGTGATTGTTTTATTTTAAA-TGTAAAAACGCTTCATATGGTGCCTATCAAC
* *
508747 ACTATAAATAGGCACCTCCACGACATTTGTACTAATAAATTTTTGCATAATAAACTCTTT-AAAA
195 ACTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAAGAAACTCTTTGAAAA
* *
508811 GATTTCTTTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGTCTTGAAACCTTCA
260 -ATTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGTCTTGAAACCTTCA
* *
508876 TCAATTTCATCTTGTTATAGCGTTGGTTCCTAGCTCTACTATAGCTAGTGGGTTACGTTCCACCC
324 TCAATATCATCTTGTTATAGCGTTGGTTCC-AGCTCTACTATAGCTAGTGGGTCACGTTCCACCC
* **
508941 TCTATCACTTCGATTGC-ATCTTTAGTATATTGTTGGTTCCTAACCCATATATAGTTAGAGGGTC
388 TCTATAACTTCGATT-CTATCTTTAGTATATTACTGGTTCCTAACCCATATATAGTTAGAGGGTC
*
509005 ACAATCCATCCTTTGAA-TACTATCATTCTCTGCA-CCAACCACAAACATCCTTTACCATTTTCG
452 ACAATCCATCCTTTGAATTACTATCATTCT-T-CACCCAACCACAAACATCCTTCACCATTTTCG
* *
509068 TTACATCCAATCAACCACTATCATCACCACACTTCTTTCATATAGAATCCACTTCAACTTCATTC
515 TTACATCCAAGCAACCACTATCATCACCACACTTCTTTCATATACAATCCACTTCAACTTCATTC
* * * * *
509133 TATCATTTTCTTTACTTTCATACACATATTTAAATATACATATTTCCCGTCTTATAACGTTGTTT
580 TATCATTTCCATTACCTACATACAAATATTTAAATATACATATTTCCCGTCTTATAACGTTGTTT
*
509198 GTACATTTTCAGTCTTCAATCAAAGCACTACGAAGTTCTTACT
645 GTACATTTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACT
* *
509241 ATAATCAAGGTCGGGAAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCA
1 AGAATCAAGATCGGGAAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCA
509306 TCC
66 TCC
509309 CCTAGCCAAG
Statistics
Matches: 691, Mismatches: 59, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
687 9 0.01
688 525 0.76
689 107 0.15
690 5 0.01
692 45 0.07
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (687 bp):
AGAATCAAGATCGGGAAATCATATATATGATCTGAAACTCATAATCGAGATCATATCATTATTCA
TCCATTTTCAATCTACATGGGAAACCATCAAAAGGTAAGAAGAATGACAAGTCATTGAATTGAAT
TAAATTGCAATTAGGTGATTGTTTTATTTTAAATGTAAAAACGCTTCATATGGTGCCTATCAACA
CTATAAATAGGCACCTCCACGACATTTGTACTAAGAAATTTTTGCATAAGAAACTCTTTGAAAAA
TTGCATTCATTTTAGTTCTTGGATTAGAACTCTATCAGTTTCTTGTAGGTCTTGAAACCTTCATC
AATATCATCTTGTTATAGCGTTGGTTCCAGCTCTACTATAGCTAGTGGGTCACGTTCCACCCTCT
ATAACTTCGATTCTATCTTTAGTATATTACTGGTTCCTAACCCATATATAGTTAGAGGGTCACAA
TCCATCCTTTGAATTACTATCATTCTTCACCCAACCACAAACATCCTTCACCATTTTCGTTACAT
CCAAGCAACCACTATCATCACCACACTTCTTTCATATACAATCCACTTCAACTTCATTCTATCAT
TTCCATTACCTACATACAAATATTTAAATATACATATTTCCCGTCTTATAACGTTGTTTGTACAT
TTTCAGTCTTAAATCAAAGCACTACGAAGTTCTTACT
Found at i:510418 original size:89 final size:89
Alignment explanation
Indices: 510142--510399 Score: 457
Period size: 89 Copynumber: 2.9 Consensus size: 89
510132 TCCCGAATAT
*
510142 TTAATTTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAG
1 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAG
510206 GGTAACTTGGATATAAGAGGATTA
66 GGTAACTTGGATATAAGAGGATTA
510230 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAG
1 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAG
510295 GGTAACTTGGATATAAGAGGATTA
66 GGTAACTTGGATATAAGAGGATTA
*
510319 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAA-CCCTAATATGATTA
1 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCC-AATATGATTA
* *
510383 GCGTAACTTGGCTATAA
65 GGGTAACTTGGATATAA
510400 AAGGGTGTGT
Statistics
Matches: 164, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
88 10 0.06
89 154 0.94
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.38
Consensus pattern (89 bp):
TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCAATATGATTAG
GGTAACTTGGATATAAGAGGATTA
Found at i:511172 original size:75 final size:75
Alignment explanation
Indices: 511084--511245 Score: 209
Period size: 75 Copynumber: 2.2 Consensus size: 75
511074 ACCCTTAACA
* * *
511084 TGGTATCGATACTACCCTACTATGATATCAATACCCCCCTCCGGTATCGATACCAAAATTAGCTT
1 TGGTATCGATACTACCATACTAGGATACCAATACCCCCCTCCGGTATCGATACCAAAATTAGCTT
*
511149 TGATG-TATCT
66 CGATGTTA-CT
* * * * * *
511159 TGGTATCGATACTACTATACTAGGGTACCGATACCCTCTTCCGGTATCGATACCAAAATTAGGTT
1 TGGTATCGATACTACCATACTAGGATACCAATACCCCCCTCCGGTATCGATACCAAAATTAGCTT
511224 CGATGTTACT
66 CGATGTTACT
*
511234 TGGTATTGATAC
1 TGGTATCGATAC
511246 CCTTACCATG
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
75 73 0.97
76 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (75 bp):
TGGTATCGATACTACCATACTAGGATACCAATACCCCCCTCCGGTATCGATACCAAAATTAGCTT
CGATGTTACT
Found at i:511259 original size:20 final size:20
Alignment explanation
Indices: 511234--511284 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
511224 CGATGTTACT
*
511234 TGGTATTGATACCCTTACCA
1 TGGTATCGATACCCTTACCA
*
511254 TGGTATCGATATCCTTACCA
1 TGGTATCGATACCCTTACCA
511274 TGGTATCGATA
1 TGGTATCGATA
511285 GTACCTCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (20 bp):
TGGTATCGATACCCTTACCA
Found at i:512345 original size:18 final size:17
Alignment explanation
Indices: 512322--512413 Score: 52
Period size: 18 Copynumber: 5.4 Consensus size: 17
512312 GTAACATTCC
512322 GGTAATCTTATTCCCGGA
1 GGTAATCTTATTCCC-GA
*
512340 GGTAATGTTACATT-CC--
1 GGTAATCTT--ATTCCCGA
512356 GGTAATCTTATTCCCGGA
1 GGTAATCTTATTCCC-GA
* *
512374 GGAAATGTTACATT-CC--
1 GGTAATCTT--ATTCCCGA
512390 GGTAATCTTATTCCCGAA
1 GGTAATCTTATTCCCG-A
512408 GGTAAT
1 GGTAAT
512414 GTTACATTCC
Statistics
Matches: 56, Mismatches: 6, Indels: 24
0.65 0.07 0.28
Matches are distributed among these distances:
14 6 0.11
15 4 0.07
16 15 0.27
18 21 0.38
19 4 0.07
20 6 0.11
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (17 bp):
GGTAATCTTATTCCCGA
Found at i:512353 original size:34 final size:34
Alignment explanation
Indices: 512305--512423 Score: 211
Period size: 34 Copynumber: 3.5 Consensus size: 34
512295 GTAAAGTGTA
*
512305 AGGTAATGTAACATTCCGGTAATCTTATTCCCGG
1 AGGTAATGTTACATTCCGGTAATCTTATTCCCGG
512339 AGGTAATGTTACATTCCGGTAATCTTATTCCCGG
1 AGGTAATGTTACATTCCGGTAATCTTATTCCCGG
* *
512373 AGGAAATGTTACATTCCGGTAATCTTATTCCCGA
1 AGGTAATGTTACATTCCGGTAATCTTATTCCCGG
512407 AGGTAATGTTACATTCC
1 AGGTAATGTTACATTCC
512424 ATGAACCAAA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 81 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (34 bp):
AGGTAATGTTACATTCCGGTAATCTTATTCCCGG
Found at i:516128 original size:67 final size:67
Alignment explanation
Indices: 516046--516186 Score: 165
Period size: 67 Copynumber: 2.1 Consensus size: 67
516036 AATAGAGGAT
* * *
516046 TATTTTATAAGTTTTAATAGCCGAAACACTTAATAAAACAACACCTTATAATTAAACATCATTTA
1 TATTTTATAAATTTTAATAGCCAAAACACTTAATAAAACAACACCTTATAATCAAACATCATTTA
516111 TG
66 TG
* * * * ** ** *
516113 TATTTTATAAATTTTATTAGTCAAAATATTTAATAAAGTAACATTTTATAATCAGACATCATTTA
1 TATTTTATAAATTTTAATAGCCAAAACACTTAATAAAACAACACCTTATAATCAAACATCATTTA
*
516178 TT
66 TG
516180 TATTTTA
1 TATTTTA
516187 CCCGATGAGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.43
Consensus pattern (67 bp):
TATTTTATAAATTTTAATAGCCAAAACACTTAATAAAACAACACCTTATAATCAAACATCATTTA
TG
Found at i:534929 original size:45 final size:42
Alignment explanation
Indices: 534859--535158 Score: 153
Period size: 45 Copynumber: 7.4 Consensus size: 42
534849 ATAAAAGAAT
*
534859 AATGCATATGGGTGCATTATTGGCATGAAAGGACGCCATGGCTAA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGA-G-CAT-GCTAA
* * *
534904 AATCCATATGGGTGCATTCTCGGCAT-AAA--AG-A----AT
1 AATGCATATGGGTGCATTATCGGCATGAAAGGAGCATGCTAA
* *
534938 AATGCATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGA-G-CAT-GCTAA
* *
534983 AATGCATATGGGTGCATTCTCGGCATTAAA-GA--A---T--
1 AATGCATATGGGTGCATTATCGGCATGAAAGGAGCATGCTAA
* *
535017 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGA-G-CAT-GCTAA
* * * *
535062 AATGCATATGGGTACATTCTTGGCAT-AAA--AG-A----AT
1 AATGCATATGGGTGCATTATCGGCATGAAAGGAGCATGCTAA
*** *
535096 AATGCATATGGGTGCATTATTTCCATGAAAGGATGCCATAGCTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGA-G-CAT-GCTAA
*
535141 AATGCATATGAGTGCATT
1 AATGCATATGGGTGCATT
535159 CTTGGAATAA
Statistics
Matches: 196, Mismatches: 26, Indels: 66
0.68 0.09 0.23
Matches are distributed among these distances:
34 73 0.37
35 8 0.04
36 1 0.01
37 2 0.01
38 2 0.01
39 3 0.02
40 3 0.02
41 2 0.01
42 2 0.01
43 1 0.01
44 8 0.04
45 91 0.46
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (42 bp):
AATGCATATGGGTGCATTATCGGCATGAAAGGAGCATGCTAA
Found at i:534951 original size:34 final size:34
Alignment explanation
Indices: 534908--535205 Score: 191
Period size: 34 Copynumber: 7.8 Consensus size: 34
534898 GGCTAAAATC
* *
534908 CATATGGGTGCATTCTCGGCATAAAAGAATAATG
1 CATATGGGTGCATTATTGGCATAAAAGAATAATG
534942 CATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGAAATG
1 CATATGGGTGCATTATTGGCAT-AAA--A-G--A-A--T--AATG
* * *
534987 CATATGGGTGCATTCTCGGCATTAAAGAATAATG
1 CATATGGGTGCATTATTGGCATAAAAGAATAATG
535021 CATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATG
1 CATATGGGTGCATTATTGGCAT-AAA--A-G--A-A--T--AATG
* *
535066 CATATGGGTACATTCTTGGCATAAAAGAATAATG
1 CATATGGGTGCATTATTGGCATAAAAGAATAATG
**
535100 CATATGGGTGCATTATTTCCATGAAAGGATGCCATAGCTGAAATG
1 CATATGGGTGCATTATTGGCAT-AAA--A-G--A-A--T--AATG
* * *
535145 CATATGAGTGCATTCTTGGAATAAAAGAATAATG
1 CATATGGGTGCATTATTGGCATAAAAGAATAATG
535179 CATATGGGTGCATTATTGGCATAAAAG
1 CATATGGGTGCATTATTGGCATAAAAG
535206 GATGCCATAA
Statistics
Matches: 209, Mismatches: 22, Indels: 66
0.70 0.07 0.22
Matches are distributed among these distances:
34 94 0.45
35 8 0.04
36 3 0.01
37 3 0.01
38 6 0.03
39 3 0.01
40 3 0.01
41 6 0.03
42 3 0.01
43 3 0.01
44 8 0.04
45 69 0.33
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (34 bp):
CATATGGGTGCATTATTGGCATAAAAGAATAATG
Found at i:534991 original size:79 final size:79
Alignment explanation
Indices: 534849--535214 Score: 606
Period size: 79 Copynumber: 4.6 Consensus size: 79
534839 GAACGAATGA
* * * *
534849 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGACGCCATGGCTAAAATCCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
534914 GGTGCATTCTCGGC
66 GGTGCATTCTCGGC
*
534928 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGACATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
534993 GGTGCATTCTCGGC
66 GGTGCATTCTCGGC
*
535007 ATTAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
* *
535072 GGTACATTCTTGGC
66 GGTGCATTCTCGGC
**
535086 ATAAAAGAATAATGCATATGGGTGCATTATTTCCATGAAAGGATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
* * *
535151 AGTGCATTCTTGGA
66 GGTGCATTCTCGGC
*
535165 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATAAAAGGATGCCATA
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATA
535215 ACTAAAAATG
Statistics
Matches: 269, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 269 1.00
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
GGTGCATTCTCGGC
Found at i:535727 original size:68 final size:68
Alignment explanation
Indices: 535609--535796 Score: 259
Period size: 68 Copynumber: 2.8 Consensus size: 68
535599 ACAAGATTAA
*
535609 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCAAAGTGCCT
535674 TAG
66 TAG
* * * ** *
535677 AGGCATAATTGTGCATTTGATAGAAAGGTGTCATTTATGTTAGTTAGATGAAAGGCAAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCAAAGTGCCT
*
535742 TTG
66 TAG
* * * * *
535745 AGGCCTAACTGAGTAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
535797 CAGTTAAACA
Statistics
Matches: 102, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 102 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCAAAGTGCCT
TAG
Found at i:535834 original size:29 final size:28
Alignment explanation
Indices: 535802--535906 Score: 156
Period size: 29 Copynumber: 3.6 Consensus size: 28
535792 ATGAACAGTT
535802 AAACACTGTTGAGTAAAAGATGAGAGGTC
1 AAACACTGTTGAGTAAAAGATGA-AGGTC
*
535831 AAACACTGTTGAGTAAAAGATGAAAGGAC
1 AAACACTGTTGAGTAAAAGATG-AAGGTC
*
535860 AAACACTGTTGAGTAAAAGATGAACGGTT
1 AAACACTGTTGAGTAAAAGATGAA-GGTC
*
535889 AAACACTGTCGAGTAAAA
1 AAACACTGTTGAGTAAAA
535907 AATAATGGTC
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
28 2 0.03
29 67 0.96
30 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.20
Consensus pattern (28 bp):
AAACACTGTTGAGTAAAAGATGAAGGTC
Found at i:541345 original size:3 final size:3
Alignment explanation
Indices: 541327--541379 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
541317 TAATTGTTAA
* * * *
541327 AAT AAT TAT CAT AAT AAT AAT AAT AAT -AT AAT AGT AAT AAT TAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
541374 -AT AAT A
1 AAT AAT A
541380 TTTATAACCT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:541359 original size:14 final size:15
Alignment explanation
Indices: 541340--541386 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
541330 AATTATCATA
541340 ATAATAATAATAA-T
1 ATAATAATAATAATT
*
541354 ATAATAGTAATAATT
1 ATAATAATAATAATT
*
541369 ATAAT-ATAATATTT
1 ATAATAATAATAATT
541383 ATAA
1 ATAA
541387 CCTGGACAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 23 0.79
15 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
ATAATAATAATAATT
Found at i:541386 original size:20 final size:20
Alignment explanation
Indices: 541327--541379 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
541317 TAATTGTTAA
* *
541327 AATAATTATCATAATAATAAT
1 AATAA-TATAATAGTAATAAT
541348 AATAATATAATAGTAATAAT
1 AATAATATAATAGTAATAAT
*
541368 TATAATATAATA
1 AATAATATAATA
541380 TTTATAACCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AATAATATAATAGTAATAAT
Found at i:541596 original size:53 final size:53
Alignment explanation
Indices: 541555--542024 Score: 577
Period size: 53 Copynumber: 8.9 Consensus size: 53
541545 CGACCAGCGA
* *
541555 GTTCGCTCCCTCTTATTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACGG
1 GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * * *
541608 GTTCGCTCCTTCTTGCTTT-AGGGAGTAGAACTCAAATAATCTTCTGCCTATGG
1 GTTCGCTCCCTCTTG-TTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * *
541661 GTTCACTCCCTCTTGCTTT-AGGAAGTAGAACTCGAACAATCTCCTGCCTACGG
1 GTTCGCTCCCTCTTG-TTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * *
541714 GTTTGATCCCTCTT-TCTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGT
1 GTTCGCTCCCTCTTGT-TTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * * * * * * *
541767 GTTCACTCCCTTTTGCTTCAGAGATTAGAACTCGAATAATCTTCTACCTATGG
1 GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * * * * *
541820 GTTTGCTCCCTCTTGCTTCAAGGAGAAGAACTGGAACAATCTTCTGCCTACGA
1 GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * * * *
541873 TTTCGCTTCCTCTTGCTTGAGGGAGTAGAACTCGAACAATCTTCTACCTACGG
1 GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
* * *
541926 GTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTTGAATAATCTTCTGCCTACGG
1 GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
*
541979 GTTCGCTCCCTCTTGTTTCAAGGAGTAGAACTCGAACAATCTTCTG
1 GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTG
542025 GTGTGATTCT
Statistics
Matches: 352, Mismatches: 61, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
51 1 0.00
52 2 0.01
53 346 0.98
54 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (53 bp):
GTTCGCTCCCTCTTGTTTCAGGGAGTAGAACTCGAACAATCTTCTGCCTACGG
Found at i:542021 original size:159 final size:159
Alignment explanation
Indices: 541535--542024 Score: 666
Period size: 159 Copynumber: 3.1 Consensus size: 159
541525 CCTTTTCTTT
* *
541535 GAACAATCTTC-GACC-AGCGAGTTCGCTCCCTCTTATTTCAGGGAGTAGAACTCGAACAATCTT
1 GAACAATCTTCTG-CCTA-CGATTTCGCTCCCTCTTACTTCAGGGAGTAGAACTCGAACAATCTT
* * *
541598 CTACCTACGGGTTCGCTCCTTCTTGCTTTAGGGAGTAGAACTCAAATAATCTTCTGCCTATGGGT
64 CTACCTACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAATAATCTTCTGCCTATGGGT
*
541663 TCACTCCCTCTTGCTTT--AGGAAGTAGAACTC
129 TCGCTCCCTCTTG-TTTCAAGG-AGTAGAACTC
* * * *
541694 GAACAATCTCCTGCCTACGGGTTT-GATCCCTCTTTCTTCAGGGAGTAGAACTCGAACAATCTTC
1 GAACAATCTTCTGCCTAC-GATTTCGCTCCCTCTTACTTCAGGGAGTAGAACTCGAACAATCTTC
* * * * * * *
541758 TGCCTACGTGTTCACTCCCTTTTGCTTCAGAGATTAGAACTCGAATAATCTTCTACCTATGGGTT
65 TACCTACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAATAATCTTCTGCCTATGGGTT
* * * *
541823 TGCTCCCTCTTGCTTCAAGGAGAAGAACTG
130 CGCTCCCTCTTGTTTCAAGGAGTAGAACTC
* * *
541853 GAACAATCTTCTGCCTACGATTTCGCTTCCTCTTGCTTGAGGGAGTAGAACTCGAACAATCTTCT
1 GAACAATCTTCTGCCTACGATTTCGCTCCCTCTTACTTCAGGGAGTAGAACTCGAACAATCTTCT
* *
541918 ACCTACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTTGAATAATCTTCTGCCTACGGGTTC
66 ACCTACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAATAATCTTCTGCCTATGGGTTC
541983 GCTCCCTCTTGTTTCAAGGAGTAGAACTC
131 GCTCCCTCTTGTTTCAAGGAGTAGAACTC
542012 GAACAATCTTCTG
1 GAACAATCTTCTG
542025 GTGTGATTCT
Statistics
Matches: 285, Mismatches: 40, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
158 6 0.02
159 271 0.95
160 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (159 bp):
GAACAATCTTCTGCCTACGATTTCGCTCCCTCTTACTTCAGGGAGTAGAACTCGAACAATCTTCT
ACCTACGGGTTCGCTCCCTCTTGCTTCAGGGAGTAGAACTCGAATAATCTTCTGCCTATGGGTTC
GCTCCCTCTTGTTTCAAGGAGTAGAACTC
Found at i:542618 original size:42 final size:41
Alignment explanation
Indices: 542543--542624 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
542533 ATATCTTATG
* * **
542543 AATGGCCCGAAGGACTTATCATTTTTCTCGAAAGACTTACA
1 AATGACCCGAAGGAATTATCATCATTCTCGAAAGACTTACA
*
542584 AATGACCCGAAGGAATTAATCATCATTCTTGAAAGACTTAC
1 AATGACCCGAAGGAATT-ATCATCATTCTCGAAAGACTTAC
542625 TGATGGATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 15 0.43
42 20 0.57
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (41 bp):
AATGACCCGAAGGAATTATCATCATTCTCGAAAGACTTACA
Found at i:542701 original size:42 final size:42
Alignment explanation
Indices: 542654--542747 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
542644 CTCTTCCGTG
* *
542654 AAGACTTA-TAAATTACTCGAAGGATTTAATCATCACGCTCGA
1 AAGACTTACT-AATGACCCGAAGGATTTAATCATCACGCTCGA
* * * *
542696 AAGACTTACTGATGGCCCGAAGGATTTCATCATCATGCTCGA
1 AAGACTTACTAATGACCCGAAGGATTTAATCATCACGCTCGA
*
542738 AAGCCTTACT
1 AAGACTTACT
542748 GATGGCACTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (42 bp):
AAGACTTACTAATGACCCGAAGGATTTAATCATCACGCTCGA
Found at i:542748 original size:42 final size:42
Alignment explanation
Indices: 542671--542753 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
542661 ATAAATTACT
542671 CGAAGGATTTAATCATCACGCTCGAAAGACTTACTGATGGCC
1 CGAAGGATTTAATCATCACGCTCGAAAGACTTACTGATGGCC
* * *
542713 CGAAGGATTTCATCATCATGCTCGAAAGCCTTACTGATGGC
1 CGAAGGATTTAATCATCACGCTCGAAAGACTTACTGATGGC
542754 ACTTACTGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (42 bp):
CGAAGGATTTAATCATCACGCTCGAAAGACTTACTGATGGCC
Found at i:542813 original size:37 final size:37
Alignment explanation
Indices: 542761--542886 Score: 153
Period size: 37 Copynumber: 3.4 Consensus size: 37
542751 GGCACTTACT
*
542761 GATGGATTTATTTCACTACTCTTCAGTGAAGGCTTAA
1 GATGGATTTACTTCACTACTCTTCAGTGAAGGCTTAA
* * * *
542798 GATGGATTTGCTTCACTACACTTCAGTAAAGGCTTAG
1 GATGGATTTACTTCACTACTCTTCAGTGAAGGCTTAA
* * * *
542835 GAAGGATTTTCTCCACTACTCTTCGTGTGAAGGCTTAA
1 GATGGATTTACTTCACTACTCTTC-AGTGAAGGCTTAA
*
542873 GATGGATTCACTTC
1 GATGGATTTACTTC
542887 TTCATACATA
Statistics
Matches: 72, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
37 52 0.72
38 20 0.28
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (37 bp):
GATGGATTTACTTCACTACTCTTCAGTGAAGGCTTAA
Found at i:545915 original size:22 final size:21
Alignment explanation
Indices: 545887--545934 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
545877 TTTTCCAGAA
545887 TGCTACAGGGGTA-TCGATACCC
1 TGCTACA-GGGTACT-GATACCC
*
545909 TGCTACAGTGTACTGATACCC
1 TGCTACAGGGTACTGATACCC
545930 TGCTA
1 TGCTA
545935 TAGTAATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (21 bp):
TGCTACAGGGTACTGATACCC
Found at i:546654 original size:31 final size:31
Alignment explanation
Indices: 546619--546852 Score: 387
Period size: 31 Copynumber: 7.5 Consensus size: 31
546609 CATAGATTTT
* *
546619 GAAGAACCTAGGTAATCAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
*
546650 GAAGAACATAGGTAAACAATCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
* * *
546681 TAAGAACATAGGTAAACAGTCAATATATCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
*
546712 GAAGAACATAGGTAAATAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
546743 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
546774 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
*
546805 GAAGAACATAGGTAAACAGTCCATATTTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
*
546836 AAAGAACATAGGTAAAC
1 GAAGAACATAGGTAAAC
546853 CCTCGACCCT
Statistics
Matches: 189, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 189 1.00
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTCCC
Found at i:554055 original size:3 final size:3
Alignment explanation
Indices: 554040--554089 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
554030 TAATTGTTAA
* * *
554040 AAT AAT TAT AAT AAT AAT AAT AAT -AT AAT AGT AAT AAT TAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
554086 AAT A
1 AAT A
554090 TTTATAACCC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
AAT
Found at i:554096 original size:20 final size:20
Alignment explanation
Indices: 554051--554089 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
554041 ATAATTATAA
554051 TAATAATAATAATATAATAG
1 TAATAATAATAATATAATAG
*
554071 TAATAATTATAATATAATA
1 TAATAATAATAATATAATA
554090 TTTATAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAATAATAATAATATAATAG
Found at i:555919 original size:79 final size:79
Alignment explanation
Indices: 555777--556076 Score: 415
Period size: 79 Copynumber: 3.8 Consensus size: 79
555767 GAATGAATGA
* * * *
555777 ATAAAATAATAATGCATATGGGTGCATTATTGGCATGAAACGATGCTATAGCT-AAAGTGCATAT
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAACTGAAA-TGCATAT
555841 GGGTGTATTCTCGGC
65 GGGTGTATTCTCGGC
* ** * *
555856 ATAAAAGAATAATGCATACGGGTGCATTACAGGCATGAAAGGACGCCATAACTGAAATACATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAACTGAAATGCATATG
555921 GGT-TCATTCTCGGC
66 GGTGT-ATTCTCGGC
* *
555935 ATAAAAGAATAATGCATATGGGTGCATTATTGGAATGAAAGGATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAACTGAAATGCATATG
*
556000 GGTGCATTCTCGGC
66 GGTGTATTCTCGGC
* * * *
556014 ATAAAAGAATAATGCGTATGGGTGCATTATTGGCATAAAAGTATGCCATAACTAAAAATGCAT
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAACT-GAAATGCAT
556077 GAACGGATGC
Statistics
Matches: 194, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 182 0.94
80 11 0.06
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAACTGAAATGCATATG
GGTGTATTCTCGGC
Found at i:555953 original size:34 final size:34
Alignment explanation
Indices: 555915--556054 Score: 118
Period size: 34 Copynumber: 3.8 Consensus size: 34
555905 AACTGAAATA
* *
555915 CATATGGGTTCATTCTCGGCATAAAAGAATAATG
1 CATATGGGTGCATTATCGGCATAAAAGAATAATG
* *
555949 CATATGGGTGCATTATTGGAATGAAAGGATGCCATAGCTGAAATG
1 CATATGGGTGCATTATCGGCAT-AAA--A-G--A-A--T--AATG
*
555994 CATATGGGTGCATTCTCGGCATAAAAGAATAATG
1 CATATGGGTGCATTATCGGCATAAAAGAATAATG
* *
556028 CGTATGGGTGCATTATTGGCATAAAAG
1 CATATGGGTGCATTATCGGCATAAAAG
556055 TATGCCATAA
Statistics
Matches: 85, Mismatches: 10, Indels: 22
0.73 0.09 0.19
Matches are distributed among these distances:
34 46 0.54
35 3 0.04
36 1 0.01
37 1 0.01
38 2 0.02
39 1 0.01
40 1 0.01
41 2 0.02
42 1 0.01
43 1 0.01
44 3 0.04
45 23 0.27
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (34 bp):
CATATGGGTGCATTATCGGCATAAAAGAATAATG
Found at i:556713 original size:68 final size:68
Alignment explanation
Indices: 556458--556672 Score: 358
Period size: 68 Copynumber: 3.2 Consensus size: 68
556448 ACAAGATTAA
* * *
556458 AGGCCTAACTGTGCATTTGAAAGAAAGGTGTCATTTATTCCAGTTAGATGAAAAGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
556523 TTG
66 TTG
* * *
556526 AGGCCTAATTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATAAAAGGCTAAGCGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
556591 TTG
66 TTG
* *
556594 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTATATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
556659 TTG
66 TTG
556662 AGGCCTAACTG
1 AGGCCTAACTG
556673 AGTAATTGGT
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 136 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:556731 original size:136 final size:136
Alignment explanation
Indices: 556458--556710 Score: 344
Period size: 136 Copynumber: 1.9 Consensus size: 136
556448 ACAAGATTAA
*
556458 AGGCCTAACTGTGCATTTGAAAGAAAGGTGTCATTTATTCCAGTTAGATGAAAAGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAAAAGCTAAGTGCCT
* * * * * * * *
556523 TTGAGGCCTAATTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATAAAAGGCTAAGCG
66 TTGAGGCCTAACTGAGCAATTGACAGAAAGATGTCAATTATGCCAGTCAAATAAAAGGCTAAACG
*
556588 CCTTTG
131 ACTTTG
* * * *
556594 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTATATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAAAAGCTAAGTGCCT
* ** *
556659 TTGAGGCCTAACTGAGTAATTGGTAGAAAGATGTCAATTATGTCAGTCAAAT
66 TTGAGGCCTAACTGAGCAATTGACAGAAAGATGTCAATTATGCCAGTCAAAT
556711 GAACGGTTAA
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
136 101 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (136 bp):
AGGCCTAACTGTGCATTTGAAAGAAAGGTGTCATTTATGCCAGTTAGATGAAAAGCTAAGTGCCT
TTGAGGCCTAACTGAGCAATTGACAGAAAGATGTCAATTATGCCAGTCAAATAAAAGGCTAAACG
ACTTTG
Found at i:556789 original size:29 final size:29
Alignment explanation
Indices: 556709--556855 Score: 222
Period size: 29 Copynumber: 5.0 Consensus size: 29
556699 TGTCAGTCAA
* * *
556709 ATGAACGGTTAAACACTATTGAGTAAAAG
1 ATGAAAGGTCAAACACTGTTGAGTAAAAG
556738 ATGAAAGGTTCAAACACTGTTGAGTAAAAG
1 ATGAAAGG-TCAAACACTGTTGAGTAAAAG
556768 ATGAAAGGTCAAACACTGTTGAGTAAAAG
1 ATGAAAGGTCAAACACTGTTGAGTAAAAG
556797 ATGAAAGGTCAAACACTGTTGAGTAAAAG
1 ATGAAAGGTCAAACACTGTTGAGTAAAAG
* * * *
556826 ATGAACGGTTAAACACTGTCGATTAAAAG
1 ATGAAAGGTCAAACACTGTTGAGTAAAAG
556855 A
1 A
556856 ATAATGGACT
Statistics
Matches: 110, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
29 83 0.75
30 27 0.25
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (29 bp):
ATGAAAGGTCAAACACTGTTGAGTAAAAG
Found at i:558870 original size:2 final size:2
Alignment explanation
Indices: 558863--558892 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
558853 ATTAGGTCGA
558863 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
558893 TCTGGATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:560791 original size:19 final size:18
Alignment explanation
Indices: 560745--560780 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
560735 ACCAGGCAAC
560745 ATCGA-ACCTAAAATGGGT
1 ATCGATACC-AAAATGGGT
560763 ATCGATACCAAAATGGGT
1 ATCGATACCAAAATGGGT
560781 TATCAGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (18 bp):
ATCGATACCAAAATGGGT
Found at i:561329 original size:45 final size:45
Alignment explanation
Indices: 561274--561361 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
561264 ATGCATTATT
*
561274 GGCATGAAAGGATGCTATAGCTGAAATGTATATGGGTGCATTCAC
1 GGCATGAAAGGATGCTATAGCTGAAATGCATATGGGTGCATTCAC
*
561319 GGCATGAAAGGATGCTATAGCTGAAATGCATATGGGTTCATTC
1 GGCATGAAAGGATGCTATAGCTGAAATGCATATGGGTGCATTC
561362 TCGACATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (45 bp):
GGCATGAAAGGATGCTATAGCTGAAATGCATATGGGTGCATTCAC
Found at i:561429 original size:79 final size:79
Alignment explanation
Indices: 561298--561552 Score: 352
Period size: 79 Copynumber: 3.2 Consensus size: 79
561288 CTATAGCTGA
* * * *
561298 AATGTATATGGGTGCATTCA-CGGCATGAAAGGATGCTATAGCTGAAATGCATATGGGTTCATTC
1 AATGCATATGGGTGCATT-ATTGGCATGAAAGGATGCCATAGCTAAAATGCATATGGGTTCATTC
561362 TCGACATAAAAGAAT
65 TCGACATAAAAGAAT
* *
561377 AATGTATATGGGAGCATTATTGGCATGAAAGGATGCCATAGCTAAAATGCATATGGGTTCATTCT
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTAAAATGCATATGGGTTCATTCT
561442 CGACATAAAA-ATAT
66 CGACATAAAAGA-AT
* * * * * *
561456 AATACATATGAGTGCATTATTGGCCTGAAAGGATGCCATAGCTTAAATGCATATGGGTGCACTCT
1 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTAAAATGCATATGGGTTCATTCT
**
561521 CGGTATAAAAGAAT
66 CGACATAAAAGAAT
561535 AATGCATATGGGTGCATT
1 AATGCATATGGGTGCATT
561553 CTCTGCATAA
Statistics
Matches: 157, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
78 2 0.01
79 154 0.98
80 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (79 bp):
AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTAAAATGCATATGGGTTCATTCT
CGACATAAAAGAAT
Found at i:561585 original size:34 final size:34
Alignment explanation
Indices: 561501--561586 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
561491 CCATAGCTTA
* *
561501 AATGCATATGGGTGCACTCTCGGTATAAAAGAAT
1 AATGCATATGGGTGCATTCTCGGCATAAAAGAAT
*
561535 AATGCATATGGGTGCATTCTCTGCATAAAAGAAT
1 AATGCATATGGGTGCATTCTCGGCATAAAAGAAT
561569 AATGCATATGGGTGCATT
1 AATGCATATGGGTGCATT
561587 ATTGGCATGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (34 bp):
AATGCATATGGGTGCATTCTCGGCATAAAAGAAT
Found at i:562083 original size:68 final size:68
Alignment explanation
Indices: 561974--562159 Score: 266
Period size: 68 Copynumber: 2.7 Consensus size: 68
561964 AAGATTAAAG
* *
561974 GCCTAACT-ATGCATTTAACATAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGGGCCTT
1 GCCTAACTGA-GCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGGGCCTT
562038 TGAA
65 TGAA
* *
562042 GCCTAACTGCGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
1 GCCTAACTGAGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGGGCCTTT
*
562107 GAG
66 GAA
* * * * *
562110 GCCTAACTGAGTAATTGGCAGAAAGGTGTCAATTATGCCAGTCAGATGAA
1 GCCTAACTGAGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
562160 CGGTTAAACA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 106 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (68 bp):
GCCTAACTGAGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGGGCCTTT
GAA
Found at i:562202 original size:29 final size:29
Alignment explanation
Indices: 562153--562271 Score: 184
Period size: 29 Copynumber: 4.1 Consensus size: 29
562143 TATGCCAGTC
* *
562153 AGATGAACGGTTAAACACTGTTGAGTAAA
1 AGATGAAAGGTCAAACACTGTTGAGTAAA
* *
562182 AGATAAAAGGTCAAAAACTGTTGAGTAAA
1 AGATGAAAGGTCAAACACTGTTGAGTAAA
562211 AGATGAAAGGTCAAACACTGTTGAGTAAA
1 AGATGAAAGGTCAAACACTGTTGAGTAAA
* *
562240 AGATGAAAGGTCAAACACTATCGAGTAAA
1 AGATGAAAGGTCAAACACTGTTGAGTAAA
562269 AGA
1 AGA
562272 ATAATGGACT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 82 1.00
ACGTcount: A:0.47, C:0.10, G:0.23, T:0.20
Consensus pattern (29 bp):
AGATGAAAGGTCAAACACTGTTGAGTAAA
Found at i:564259 original size:4 final size:4
Alignment explanation
Indices: 564252--564287 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
564242 TGTGTGTGTG
564252 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
564288 CATTTAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:564639 original size:18 final size:18
Alignment explanation
Indices: 564615--564661 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
564605 TTTAATTTCT
564615 TTATAATAATTTAAAGTTA
1 TTATAATAATTTAAA-TTA
*
564634 -TATAATGATTTTAAATTA
1 TTATAAT-AATTTAAATTA
564652 TTATAA-AATT
1 TTATAATAATT
564662 AGCATGTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.12
18 9 0.38
19 12 0.50
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (18 bp):
TTATAATAATTTAAATTA
Found at i:568248 original size:45 final size:47
Alignment explanation
Indices: 568197--568285 Score: 155
Period size: 45 Copynumber: 1.9 Consensus size: 47
568187 TCGAATAAAT
568197 GCATGCGAACTAGATATCATGCGGTTAGG-TTTATTTTT-TGAACAA
1 GCATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAACAA
*
568242 GCATGCGAATTAGATATCATGCGGTTAGGATTTATTTTTGTGAA
1 GCATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAA
568286 TGACAAAGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 28 0.68
46 9 0.22
47 4 0.10
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (47 bp):
GCATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAACAA
Found at i:577886 original size:17 final size:17
Alignment explanation
Indices: 577864--577911 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
577854 ATTTTGCTTG
577864 AAGAAGAAATAAA-GAGA
1 AAGAAGAAA-AAATGAGA
577881 AAGAAGAAAAAATGAGA
1 AAGAAGAAAAAATGAGA
*
577898 AA-AAAAAAAAATGA
1 AAGAAGAAAAAATGA
577912 TGGAAAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (17 bp):
AAGAAGAAAAAATGAGA
Found at i:577930 original size:28 final size:28
Alignment explanation
Indices: 577886--577946 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
577876 AGAGAAAGAA
* **
577886 GAAAAAATGAGAAAAAAAAAAAATGATG
1 GAAAAAACGAGAAAAAAAAAAAAAAATG
577914 GAAAAAACGA-AAGAAAAAAAAAAAAATG
1 GAAAAAACGAGAA-AAAAAAAAAAAAATG
577942 GAAAA
1 GAAAA
577947 TGGAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 2 0.07
28 27 0.93
ACGTcount: A:0.75, C:0.02, G:0.16, T:0.07
Consensus pattern (28 bp):
GAAAAAACGAGAAAAAAAAAAAAAAATG
Found at i:577946 original size:26 final size:26
Alignment explanation
Indices: 577895--577978 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 26
577885 AGAAAAAATG
577895 AGAAAAAAAAAAAATGATGGAAAAAACGAA
1 AGAAAAAAAAAAAA--ATGG-AAAAA-GAA
* *
577925 AGAAAAAAAAAAAAATGGAAAATGGA
1 AGAAAAAAAAAAAAATGGAAAAAGAA
**
577951 AGAAAAAGAGGAAAAATGGAAAAAGAA
1 AGAAAAA-AAAAAAAATGGAAAAAGAA
577978 A
1 A
577979 ATAAAAGTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
26 9 0.19
27 20 0.43
28 4 0.09
30 14 0.30
ACGTcount: A:0.73, C:0.01, G:0.20, T:0.06
Consensus pattern (26 bp):
AGAAAAAAAAAAAAATGGAAAAAGAA
Found at i:577956 original size:20 final size:20
Alignment explanation
Indices: 577931--577980 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
577921 CGAAAGAAAA
577931 AAAAAAAAATGG-AAAATGG
1 AAAAAAAAATGGAAAAATGG
*
577950 AAGAAAAAGA-GGAAAAATGG
1 AA-AAAAAAATGGAAAAATGG
577970 AAAAAGAAAAT
1 AAAAA-AAAAT
577981 AAAAGTAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (20 bp):
AAAAAAAAATGGAAAAATGG
Found at i:579222 original size:50 final size:50
Alignment explanation
Indices: 579162--579416 Score: 359
Period size: 51 Copynumber: 5.0 Consensus size: 50
579152 AAGCAAATTC
579162 GTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
1 GTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
579212 GTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
1 GTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
* *
579262 GTTTGTTGAAGATTGTTCGAGGTTCTATACTCTCTGAAGGAATAGGGAGCGGA-TA
1 G-TTGTTGAAGA---TT-GA-GTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
* * *
579317 GTCGTTGAAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGGACAC
1 GTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
* * * *
579367 GTTTATTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACA
1 G-TTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
579417 CGTTTACTGA
Statistics
Matches: 185, Mismatches: 12, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
49 30 0.16
50 54 0.29
51 55 0.30
54 11 0.06
55 4 0.02
56 31 0.17
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (50 bp):
GTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAA
Found at i:579303 original size:106 final size:105
Alignment explanation
Indices: 579175--579521 Score: 422
Period size: 106 Copynumber: 3.3 Consensus size: 105
579165 GTTGAAGATT
* *
579175 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTGTTGAAGATTGAGTCCTATACTCTC
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTGTTGAAGATTGAGTCATATACTCTC
* *
579240 TGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTC
66 TGAAGGAATAGGGAGCGGACACGTTTATTGAAGATTGTTC
* *
579280 GAGGT-TCTATACTCTCTGAAGGAATAGGGAGCGGA-TAGTCGTTGAAGATTGAGTCATATACTC
1 GA-GTCT-TATACTCTCTGAAGGAATAGGGAGCGGACAAGTTGTTGAAGATTGAGTCATATACTC
579343 TCTGAAGGAATAGGGAGCGGACACGTTTATTGAAGA----TC
64 TCTGAAGGAATAGGGAGCGGACACGTTTATTGAAGATTGTTC
* * * *
579381 GAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGTT-TACTGAATATTAATCGAGTCTTAT
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTGT--TGAAGA-T--T-GAGTCATAT
* * * *
579445 ACTCCCTGAATGAATAGGGAGCAGACACGTTTACTGAAGATTGTTC
60 ACTCTCTGAAGGAATAGGGAGCGGACACGTTTATTGAAGATTGTTC
*
579491 GAGTCTTATACTC-CATGAAAGAATAGGGAGC
1 GAGTCTTATACTCTC-TGAAGGAATAGGGAGC
579522 AGACCTGCCA
Statistics
Matches: 210, Mismatches: 17, Indels: 25
0.83 0.07 0.10
Matches are distributed among these distances:
100 30 0.14
101 7 0.03
102 5 0.02
103 1 0.00
105 62 0.30
106 74 0.35
109 1 0.00
110 30 0.14
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (105 bp):
GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTGTTGAAGATTGAGTCATATACTCTC
TGAAGGAATAGGGAGCGGACACGTTTATTGAAGATTGTTC
Found at i:579397 original size:51 final size:51
Alignment explanation
Indices: 579166--579521 Score: 353
Period size: 55 Copynumber: 6.8 Consensus size: 51
579156 AAATTCGTTG
* * * *
579166 TTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAG-TTG
1 TTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
* * * *
579216 TTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTG
1 TTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
* **
579267 TTGAAGATTGTTCGAGGT-TCTATACTCTCTGAAGGAATAGGGAGCGGATA-G-TCG
1 TTGAAGA----TCGA-GTCT-TATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
* *
579321 TTGAAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
1 TTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
*
579372 TTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGTTTA
1 TTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
* * * * *
579423 CTGAATATTAATCGAGTCTTATACTCCCTGAATGAATAGGGAGCAGACACGTTTA
1 TTG-A-A--GATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
* *
579478 CTGAAGATTGTTCGAGTCTTATACTC-CATGAAAGAATAGGGAGC
1 TTGAAGA----TCGAGTCTTATACTCTC-TGAAGGAATAGGGAGC
579522 AGACCTGCCA
Statistics
Matches: 269, Mismatches: 18, Indels: 33
0.84 0.06 0.10
Matches are distributed among these distances:
49 31 0.12
50 51 0.19
51 62 0.23
52 1 0.00
53 2 0.01
54 11 0.04
55 80 0.30
56 31 0.12
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (51 bp):
TTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTA
Found at i:579447 original size:155 final size:155
Alignment explanation
Indices: 579165--579466 Score: 446
Period size: 155 Copynumber: 1.9 Consensus size: 155
579155 CAAATTCGTT
* * *
579165 GTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTGTTGAAGATTGAGTC
1 GTTGAAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGGACAAGTTATTGAAGATCGAGTC
* ** ** *
579230 CTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGATTGTTCGAGGTTCTATACTCT
66 CTATACTCTCTGAAGGAATAGGGAGCAGACAAGTTTACTGAAGATTAATCGAGGTTCTATACTCC
579295 CTGAAGGAATAGGGAGCGGATAGTC
131 CTGAAGGAATAGGGAGCGGATAGTC
*
579320 GTTGAAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGGACACGTTTATTGAAGATCGAGT
1 GTTGAAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGGACAAG-TTATTGAAGATCGAGT
* * *
579385 CTTATACTCTCTGAAGGAATAGGGAGCAGACACGTTTACTGAATATTAATCGA-G-TCTTATACT
65 CCTATACTCTCTGAAGGAATAGGGAGCAGACAAGTTTACTGAAGATTAATCGAGGTTC-TATACT
*
579448 CCCTGAATGAATAGGGAGC
129 CCCTGAAGGAATAGGGAGC
579467 AGACACGTTT
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
154 2 0.02
155 70 0.53
156 59 0.45
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (155 bp):
GTTGAAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGGACAAGTTATTGAAGATCGAGTC
CTATACTCTCTGAAGGAATAGGGAGCAGACAAGTTTACTGAAGATTAATCGAGGTTCTATACTCC
CTGAAGGAATAGGGAGCGGATAGTC
Found at i:580193 original size:3 final size:3
Alignment explanation
Indices: 580185--580226 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
580175 AATTGTTTTA
580185 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
580227 TTTGTGCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:582328 original size:72 final size:72
Alignment explanation
Indices: 582197--582343 Score: 206
Period size: 72 Copynumber: 2.0 Consensus size: 72
582187 ACGAGAGGTC
* *
582197 TTTTAAATCACATTTGTTTTTAAATTAAAAAGAGATAATTAAGAATTAATGTGGTTTTTTAAAAT
1 TTTTAAATCACATTTGTTTTTAAATTAAAAAGAGATAATTAAAAATTAATGTGGATTTTTAAAAT
*
582262 CTCACTT
66 CACACTT
* * * *
582269 TTTTAAATCGCATTTGTTTTTAAATTAAAATGAGGTAACTTAAAAATTAATGT-GATTTTTTAAA
1 TTTTAAATCACATTTGTTTTTAAATTAAAAAGAGATAA-TTAAAAATTAATGTGGATTTTTAAAA
*
582333 TCACCCTT
65 TCACACTT
582341 TTT
1 TTT
582344 CACCTTTTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
72 53 0.80
73 13 0.20
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.46
Consensus pattern (72 bp):
TTTTAAATCACATTTGTTTTTAAATTAAAAAGAGATAATTAAAAATTAATGTGGATTTTTAAAAT
CACACTT
Found at i:584107 original size:6 final size:6
Alignment explanation
Indices: 584088--584125 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
584078 CCCTAAATTA
584088 AAAATG AAAA-G AAAATG AAAATG AAAATG AAAA-G AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
584126 AAGACAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 10 0.32
6 21 0.68
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (6 bp):
AAAATG
Found at i:584126 original size:12 final size:11
Alignment explanation
Indices: 584088--584125 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
584078 CCCTAAATTA
584088 AAAATGAAAAG
1 AAAATGAAAAG
584099 AAAATGAAAATG
1 AAAATGAAAA-G
584111 AAAATGAAAAG
1 AAAATGAAAAG
584122 AAAA
1 AAAA
584126 AAGACAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 15 0.58
12 11 0.42
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (11 bp):
AAAATGAAAAG
Done.