genome.fa.s4991.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004991.1 Hibiscus syriacus cultivar Beakdansim tig00011203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80707

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4462--4502	21	2.0	21	90	0	64	65	4	4	24	1.32
5119--5157	19	2.1	19	100	0	78	43	20	10	25	1.83
8464--8562	21	4.7	20	71	8	72	19	1	35	44	1.57
8521--8569	21	2.3	20	80	10	53	20	2	32	44	1.63
9487--9513	2	13.5	2	100	0	54	48	0	0	51	1.00
18833--18899	28	2.4	30	78	14	81	49	2	2	44	1.32
20612--20663	18	2.9	18	79	0	68	26	32	17	23	1.96
24133--24172	18	2.2	18	86	8	55	37	0	2	60	1.11
25126--25162	18	2.0	19	85	15	51	40	2	0	56	1.13
29302--29634	36	9.2	36	88	1	479	34	23	23	18	1.96
30218--30308	45	2.0	45	95	0	164	26	16	17	39	1.91
32262--32310	19	2.6	19	84	9	57	24	28	20	26	1.99
36997--37044	25	1.9	25	100	0	96	54	18	16	10	1.70
38111--38164	22	2.6	21	77	13	58	33	29	12	24	1.92
39735--39778	21	2.1	21	83	8	54	9	38	13	38	1.77
40874--41029	65	2.4	64	82	9	167	33	21	16	29	1.95
43577--43897	103	3.1	103	96	0	588	25	13	23	37	1.92
43904--43981	23	3.3	23	74	1	66	25	17	21	34	1.96
49085--49405	103	3.1	103	97	0	597	25	13	23	36	1.92
49412--49489	23	3.3	23	74	1	66	25	17	21	34	1.96
53423--53467	21	2.2	20	84	11	56	42	8	4	44	1.56
68075--68115	19	2.2	19	95	0	73	31	12	4	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70958--71334	208	1.8	208	87	1	567	40	12	17	29	1.86
71138--71657	182	2.9	182	88	2	765	41	14	16	28	1.87
73939--73969	14	2.1	15	94	5	55	22	6	58	12	1.58
74042--74084	21	2.0	21	82	8	52	44	11	32	11	1.77
74051--74094	21	2.1	21	95	0	79	38	11	36	13	1.81
74371--74427	18	3.2	18	94	0	96	59	0	36	3	1.14
80570--80622	18	2.8	20	88	11	92	26	33	15	24	1.95

Tables:   1

The End!