Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004992.1 Hibiscus syriacus cultivar Beakdansim tig00011205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75249

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2325--2367
16
2.8
15
82
10
52
72
6
9
11
1.29
2547--2591
2
23.0
2
95
4
83
48
0
0
51
1.00
2844--2873
15
1.9
16
93
6
53
50
0
13
36
1.42
2989--3066
40
1.9
41
86
2
113
47
5
19
28
1.70
3170--3351
99
1.8
98
86
1
265
37
15
20
25
1.93
4431--4474
15
2.9
16
83
10
65
72
0
6
20
1.07
5497--5564
6
11.0
6
77
14
59
79
0
2
17
0.86
5497--5564
13
5.5
12
75
19
59
79
0
2
17
0.86
5552--5587
17
2.2
17
90
9
58
63
5
0
30
1.17
5622--5780
37
4.5
34
82
13
164
40
8
3
48
1.49
5578--5785
71
2.9
68
82
12
210
41
8
3
45
1.53
7341--7397
22
2.6
23
83
10
66
21
15
29
33
1.94
7507--7559
20
2.6
21
84
3
72
18
22
33
24
1.97
7869--7918
21
2.4
21
83
6
57
42
12
20
26
1.86
14770--14819
21
2.4
22
80
10
59
40
14
20
26
1.90
14995--15069
23
3.3
23
86
1
107
20
21
26
32
1.97
14991--15109
23
5.4
22
77
12
93
22
20
25
31
1.98
15732--16389
201
3.3
201
84
2
863
29
21
18
31
1.97
20749--20779
12
2.6
12
94
0
53
67
3
3
25
1.20
22156--22548
54
7.3
54
88
0
563
32
20
18
29
1.96
22872--22942
22
3.5
22
81
9
71
29
22
16
30
1.96
32137--32196
3
20.7
3
79
6
70
63
0
1
35
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32137--32187
17
2.9
18
88
5
77
62
0
1
35
1.06
32140--32196
26
2.2
26
87
0
78
63
0
1
35
1.05
32315--32738
123
3.5
122
87
2
575
25
18
16
38
1.92
40744--40922
91
2.0
88
96
3
331
31
20
14
33
1.93
46238--46662
123
3.5
123
91
1
660
25
20
15
38
1.92
49045--49102
20
3.0
20
82
7
66
3
15
1
79
0.95
49061--49096
12
2.8
13
87
4
56
0
13
0
86
0.58
51386--51440
26
2.1
26
86
0
74
52
10
18
18
1.73
51433--51481
26
1.9
25
87
4
71
65
6
10
18
1.43
51433--51520
20
4.5
19
75
8
61
62
9
11
17
1.53
51470--51523
19
2.8
19
81
10
65
59
12
12
14
1.62
55191--55234
23
2.0
22
82
13
54
4
4
22
68
1.27
55722--55787
3
23.7
3
75
14
61
62
0
1
36
1.05
55722--55779
11
5.0
11
80
17
64
60
0
1
37
1.07
55722--55787
22
2.9
23
79
18
75
62
0
1
36
1.05
55722--55778
19
2.9
19
81
2
69
61
0
1
36
1.07
55723--55787
11
5.6
11
81
15
60
61
0
1
36
1.05
55732--55786
19
3.1
18
75
12
51
61
0
0
38
0.96
63632--63659
2
14.0
2
100
0
56
0
50
0
50
1.00
63944--63973
15
1.9
16
93
6
53
23
20
23
33
1.97
65752--65786
15
2.3
15
90
0
52
20
22
8
48
1.76
72024--72063
21
1.9
21
89
0
62
35
2
10
52
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74714--74772
3
19.3
3
89
10
93
33
0
1
64
1.04
74715--74760
23
2.0
23
100
0
92
30
0
0
69
0.89
74717--74772
23
2.4
23
91
5
87
33
0
1
64
1.04

Tables:   1

The End!