genome.fa.s4993.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004993.1 Hibiscus syriacus cultivar Beakdansim tig00011206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86131

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6258--6307	25	2.0	25	92	0	82	34	14	26	26	1.94
9900--9968	30	2.3	30	90	5	104	17	7	21	53	1.67
16385--16429	3	15.0	3	100	0	90	33	0	0	66	0.92
16934--16965	14	2.3	14	94	0	55	81	0	18	0	0.70
17287--17325	2	19.5	2	94	0	69	51	0	0	48	1.00
18861--18921	27	2.5	26	82	15	76	26	4	4	63	1.35
23193--25444	4	568.8	4	96	2	4199	49	25	0	24	1.51
25442--25827	4	96.8	4	95	0	576	51	44	1	3	1.26
26462--26611	67	2.3	65	79	9	169	30	18	14	38	1.89
26634--26935	130	2.3	131	81	6	360	26	31	16	25	1.97
26830--26977	40	3.6	40	70	13	122	25	31	17	25	1.97
26830--27018	83	2.3	83	86	1	263	26	31	16	25	1.97
27052--27158	43	2.6	42	81	11	114	23	29	19	27	1.98
28712--28856	30	5.0	29	76	15	138	17	13	11	57	1.65
28717--28876	30	5.4	30	76	16	129	18	13	11	57	1.64
30060--30130	29	2.4	29	97	0	133	40	26	8	23	1.83
35209--35235	14	1.9	14	100	0	54	37	7	0	55	1.28
43937--44024	42	2.1	42	81	8	110	39	20	15	23	1.91
43890--44561	243	2.8	242	85	4	887	36	18	16	28	1.92
44533--44598	33	2.0	32	88	2	96	37	16	3	42	1.64
44828--45147	58	5.7	58	76	5	266	41	16	11	30	1.84
53579--53624	24	1.9	24	86	8	67	52	6	4	36	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53578--53630	24	2.2	24	80	6	63	52	9	3	33	1.52
62191--62244	26	2.1	26	96	0	99	22	11	29	37	1.89
63455--63521	26	2.6	26	80	0	89	28	22	19	29	1.98
63464--63519	13	4.3	13	90	0	76	30	23	14	32	1.94
70158--70220	17	3.6	17	84	2	81	22	49	17	11	1.78
70258--70405	29	5.2	29	83	1	183	33	4	19	42	1.72
70258--70436	58	3.1	58	82	4	159	32	4	19	43	1.71
77440--77496	24	2.4	24	82	2	80	33	22	21	22	1.97
77626--77702	15	5.1	15	76	6	84	38	25	9	25	1.85
77626--77702	30	2.6	30	81	4	93	38	25	9	25	1.85
78192--78241	21	2.5	20	87	9	66	34	20	12	34	1.89
83527--83851	179	1.8	179	99	0	641	31	23	12	33	1.91
84613--84657	23	2.0	23	86	0	63	35	22	24	17	1.95

Tables:   1

The End!