genome.fa.s4994.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004994.1 Hibiscus syriacus cultivar Beakdansim tig00011207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73889

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5975--6022	16	2.9	16	84	3	51	45	2	4	47	1.33
6494--6563	35	2.0	35	100	0	140	34	11	20	34	1.88
6834--6889	17	3.4	17	87	5	78	66	10	3	19	1.37
9081--9123	13	3.3	13	80	0	59	20	20	18	39	1.93
9090--9132	13	3.3	13	80	0	50	23	20	13	41	1.88
9104--9352	85	3.0	85	84	5	285	28	20	17	32	1.96
9104--9324	83	2.6	82	84	8	268	28	20	17	33	1.95
9372--9432	2	30.5	2	100	0	122	49	0	0	50	1.00
14189--14244	15	3.7	15	90	2	85	7	23	10	58	1.56
17097--17136	20	2.0	20	95	0	71	27	10	0	62	1.27
18685--18798	50	2.3	51	86	4	151	49	8	3	38	1.51
20344--20416	31	2.4	31	88	4	112	50	15	10	23	1.75
23223--23247	12	2.1	12	100	0	50	0	16	0	84	0.63
25577--25613	12	3.1	12	92	7	58	72	0	0	27	0.84
25576--25621	15	3.2	15	77	17	53	73	0	0	26	0.83
25573--25619	10	4.5	10	80	17	51	72	0	0	27	0.85
26588--26743	31	5.0	31	94	1	269	38	21	19	20	1.94
26921--26967	23	2.0	24	91	4	78	34	21	0	44	1.52
27569--27613	21	2.1	21	87	0	63	15	24	28	31	1.96
29123--29159	15	2.4	16	82	13	51	54	0	0	45	1.00
29966--30015	26	1.9	26	100	0	100	48	8	8	36	1.62
31419--31482	2	32.0	2	100	0	128	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31473--31733	95	2.7	98	86	4	343	32	14	18	35	1.90
32503--32542	3	13.7	3	94	5	73	35	0	0	65	0.93
35466--36909	84	17.3	84	85	1	1592	33	24	18	23	1.97
35462--36909	251	5.8	251	84	3	1624	33	24	18	23	1.97
37523--37643	37	3.3	35	73	19	106	42	1	10	44	1.49
37667--37705	2	19.5	2	100	0	78	51	0	0	48	1.00
37519--37685	73	2.3	73	78	12	180	43	2	10	43	1.51
37599--37775	96	1.9	93	90	3	282	44	3	7	44	1.50
37588--37903	34	9.1	33	72	15	187	43	3	7	44	1.50
37691--37903	36	5.8	37	77	11	192	43	3	7	45	1.50
37695--37903	38	5.8	35	74	16	169	43	3	7	44	1.50
37691--37903	109	1.9	111	82	9	267	43	3	7	45	1.50
37691--37944	75	3.4	70	79	13	183	44	3	7	44	1.48
37937--38006	10	6.2	11	81	16	58	25	0	1	72	0.92
37938--37979	5	8.0	5	80	19	50	23	0	0	76	0.79
37938--37997	17	3.5	17	77	15	52	25	0	0	75	0.81
37971--38018	7	7.3	7	79	13	57	25	2	2	70	1.09
39390--39418	13	2.2	13	100	0	58	6	13	0	79	0.93
42376--42466	31	3.1	29	77	4	94	25	4	8	61	1.44
42512--42600	30	2.9	31	70	6	74	26	12	10	50	1.71
43143--43300	21	7.8	20	72	7	86	38	25	17	18	1.92
43267--43460	20	9.6	20	80	5	212	36	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43267--43460	60	3.2	60	83	0	244	36	25	19	19	1.95
43843--43913	33	2.2	33	92	0	115	11	22	18	47	1.80
44034--44088	14	3.6	14	73	21	56	41	23	25	9	1.83
44034--44104	33	2.2	33	94	0	124	43	25	22	8	1.81
45818--46100	93	3.1	93	98	0	550	22	12	19	45	1.83
46148--46277	20	7.3	19	73	18	100	46	28	16	8	1.77
46185--46277	33	2.8	32	91	4	150	46	27	18	7	1.76
46273--46406	19	7.6	19	76	15	119	11	19	23	45	1.82
46295--46350	14	3.7	14	80	17	67	10	21	23	44	1.83
46278--46369	32	2.8	33	91	3	159	10	20	21	46	1.81
48317--48351	14	2.6	14	90	4	54	31	0	22	45	1.53
48458--48555	19	5.4	19	84	13	143	45	17	22	14	1.84
48458--48573	53	2.2	53	98	1	225	43	18	24	13	1.86
48580--48810	32	6.9	32	79	14	254	13	22	18	45	1.85
48580--48796	19	12.9	18	72	22	188	13	22	18	45	1.85
48580--48796	84	2.6	82	82	10	294	13	22	18	45	1.85
48580--48810	52	4.6	51	83	12	309	13	22	18	45	1.85
51277--51323	24	2.0	24	87	8	69	38	21	14	25	1.92
52004--52233	20	11.5	20	83	3	223	19	17	24	37	1.93
52220--52302	21	4.0	21	73	6	69	26	16	22	33	1.96
52200--52297	42	2.4	42	75	14	98	21	18	22	37	1.94
57981--58026	19	2.4	19	100	0	92	17	34	10	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62319--62623	43	7.1	42	81	6	353	31	18	23	26	1.97
62319--62623	86	3.6	85	86	2	389	31	18	23	26	1.97
72049--72132	31	2.7	31	87	5	118	36	23	15	23	1.93

Tables:   1

The End!