Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004995.1 Hibiscus syriacus cultivar Beakdansim tig00011209_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87566

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14830--14867
15
2.5
15
100
0
76
34
26
13
26
1.93
15034--15074
21
2.0
21
85
0
55
53
2
4
39
1.35
17648--17715
31
2.2
30
81
2
73
32
13
7
47
1.70
21650--21761
31
3.7
30
74
15
97
56
1
8
33
1.39
21893--22037
33
4.2
33
74
15
100
55
0
7
35
1.33
21940--22037
34
2.8
34
83
10
117
56
0
6
37
1.24
21940--22037
33
2.8
33
80
9
106
56
0
6
37
1.24
22754--22817
32
2.1
30
88
5
92
18
14
14
53
1.73
25668--25726
31
1.9
31
86
6
84
27
5
11
55
1.56
26566--26598
17
1.9
17
100
0
66
54
6
6
33
1.50
29575--29620
3
15.0
3
90
4
74
30
0
0
69
0.89
30550--30695
60
2.4
60
78
6
161
34
19
14
30
1.92
30800--30849
25
2.0
25
100
0
100
36
12
4
48
1.59
34506--34568
32
2.0
32
87
6
92
38
19
15
26
1.92
36584--36631
24
2.0
24
91
0
78
31
10
14
43
1.79
36950--37059
40
2.8
40
92
0
193
20
17
30
30
1.96
37164--37250
44
2.0
45
88
2
131
39
9
22
28
1.85
39852--39913
9
6.9
9
76
20
51
77
0
20
1
0.85
39842--39913
22
3.2
22
83
13
94
77
0
20
1
0.84
39841--39914
12
6.5
11
74
13
69
78
0
20
1
0.83
44309--44722
54
7.7
54
85
2
528
34
17
17
30
1.93
45056--45110
20
2.6
23
83
11
64
25
21
12
40
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51127--51439
54
5.8
54
84
0
383
32
17
19
30
1.95
51133--51439
162
1.9
162
88
1
463
32
17
19
30
1.95
52697--52753
28
2.0
28
93
0
96
24
19
22
33
1.97
64837--64884
23
2.3
22
86
13
66
33
0
0
66
0.92
64849--64884
11
3.2
11
92
7
63
33
0
0
66
0.92
67172--68021
451
1.9
451
92
0
1416
26
22
26
24
2.00
79715--79761
20
2.4
19
86
13
60
51
8
14
25
1.71

Tables:   1

The End!