genome.fa.s4996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004996.1 Hibiscus syriacus cultivar Beakdansim tig00011217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  207225

Tables:   1   

This is table  1  of  1  ( 116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--188	32	2.0	32	87	0	90	34	12	22	30	1.91
455--507	28	1.9	27	84	3	70	49	5	13	32	1.65
6141--6211	31	2.3	31	100	0	142	49	12	32	5	1.64
15320--15353	17	2.0	17	100	0	68	29	23	17	29	1.97
16222--16280	25	2.3	24	80	11	64	52	6	11	28	1.63
16689--16939	80	3.2	80	87	1	353	34	17	19	28	1.94
17087--17124	3	12.7	3	94	0	58	39	0	0	60	0.97
17088--17130	21	2.0	21	95	0	77	44	2	0	53	1.13
19422--19472	16	3.1	16	88	2	66	64	27	1	5	1.27
20829--20855	3	9.0	3	100	0	54	0	33	0	66	0.92
27974--28002	14	2.0	15	93	6	51	10	0	27	62	1.28
38134--38185	3	16.7	3	84	7	68	40	0	0	59	0.97
38211--38255	23	2.0	23	82	8	56	55	26	0	17	1.42
43275--43313	18	2.2	18	95	0	69	30	7	28	33	1.85
43661--43780	46	2.7	44	81	10	129	21	34	20	23	1.97
43643--44894	128	9.7	127	80	6	1281	25	29	18	26	1.98
44220--44549	46	7.7	43	70	14	180	25	30	18	25	1.98
43643--44970	256	5.1	256	83	5	1455	25	29	18	26	1.98
44692--44809	46	2.7	46	83	7	147	23	29	21	25	1.99
45175--45229	3	17.7	3	88	7	83	38	0	0	61	0.96
45784--45897	30	3.9	29	72	11	97	20	13	10	56	1.66
49896--49986	28	3.3	28	78	7	80	35	5	1	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53255--53286	15	2.1	15	94	0	55	25	18	9	46	1.79
57069--57100	9	3.6	9	91	0	55	21	21	0	56	1.43
59888--59949	3	20.7	3	78	6	63	40	1	0	58	1.08
59888--59949	21	3.3	19	88	8	83	40	1	0	58	1.08
59888--59947	24	2.6	24	79	12	72	41	1	0	56	1.09
61231--61280	15	3.3	15	73	15	50	28	6	0	66	1.15
61348--61380	15	2.3	15	89	5	50	42	0	0	57	0.98
64249--64287	14	2.8	14	85	11	53	17	17	5	58	1.56
67094--67147	25	2.0	25	86	10	72	74	12	9	3	1.20
69288--69737	114	3.9	114	95	0	783	34	14	18	33	1.90
71930--72059	54	2.4	54	90	0	206	36	16	23	22	1.94
72439--72493	22	2.5	22	84	0	83	36	10	10	41	1.75
73008--73332	166	2.0	166	88	3	494	35	13	12	39	1.82
73335--74392	76	13.9	76	96	0	1938	23	19	22	34	1.96
73335--74562	228	5.5	228	94	2	2100	23	19	22	35	1.96
74346--74447	31	3.4	29	69	20	86	27	16	19	36	1.93
74339--74447	57	1.9	58	94	1	193	27	17	20	34	1.95
74263--74525	133	2.0	133	95	0	472	24	19	21	34	1.96
74396--74562	76	2.2	76	93	0	289	23	17	22	35	1.95
74726--74778	3	17.7	3	76	7	54	41	0	0	58	0.98
74785--74838	26	2.1	26	92	0	90	42	31	16	9	1.80
76061--76110	15	3.3	15	73	15	50	28	6	0	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76178--76210	15	2.3	15	89	5	50	42	0	0	57	0.98
77576--77622	11	4.5	11	76	12	55	80	2	14	2	0.89
77596--77652	11	4.9	11	75	12	51	78	0	12	8	0.95
79642--79983	139	2.5	139	84	4	424	41	13	17	27	1.87
79753--80021	138	1.9	137	80	5	301	41	13	15	29	1.85
80238--80312	39	1.9	39	94	0	132	21	44	17	17	1.87
81509--81544	16	2.1	16	90	10	54	25	0	5	69	1.10
81866--81937	31	2.5	28	81	6	81	50	0	1	48	1.09
85103--85463	180	2.0	180	100	0	722	28	19	25	27	1.99
90258--90290	17	1.9	17	100	0	66	27	0	0	72	0.85
91110--91195	3	29.0	3	81	11	88	38	0	1	60	1.04
92543--92788	137	1.8	137	83	6	331	41	6	7	44	1.59
93291--93348	28	2.2	26	87	6	80	32	5	0	62	1.18
100449--100479	9	3.4	9	95	0	53	22	16	0	61	1.34
106342--106523	54	3.4	54	91	0	292	39	14	18	27	1.89
106846--106907	22	2.9	22	85	9	83	35	12	14	37	1.85
107195--107750	113	4.7	121	78	11	588	39	14	17	28	1.90
107195--107750	234	2.4	234	92	1	936	39	14	17	28	1.90
108109--108185	3	26.0	3	74	12	70	35	1	1	62	1.12
109433--109485	15	3.5	15	80	12	54	28	5	5	60	1.42
109438--109485	16	3.0	17	85	8	57	29	6	4	60	1.40
109499--109561	8	6.9	9	72	22	51	31	0	3	65	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109499--109561	3	20.7	3	74	18	51	31	0	3	65	1.09
109463--109528	15	4.3	15	76	14	64	27	3	1	68	1.13
109664--109912	135	1.9	134	85	7	353	40	7	7	44	1.59
113198--113379	54	3.4	54	91	0	292	39	14	18	27	1.89
113702--113763	22	2.9	22	85	9	83	35	12	14	37	1.85
114052--114607	113	4.7	121	78	11	588	39	14	17	28	1.90
114052--114607	234	2.4	234	92	1	936	39	14	17	28	1.90
114966--115048	3	27.0	3	75	4	76	34	1	1	62	1.11
114982--115049	34	2.0	34	91	0	109	39	1	1	57	1.17
116291--116328	14	2.7	14	92	8	60	28	5	0	65	1.14
116295--116362	15	4.5	16	78	12	65	26	5	1	66	1.23
116305--116362	30	1.9	31	86	10	84	25	5	1	67	1.21
116354--116417	3	21.7	3	74	17	55	31	0	3	65	1.08
116305--116384	15	5.2	15	76	13	58	26	3	1	68	1.13
116346--116417	11	6.4	11	76	20	69	30	0	2	66	1.06
123344--123875	113	4.6	114	84	5	639	37	14	20	28	1.91
123665--123946	123	2.3	122	89	4	426	39	14	18	27	1.89
127494--127556	23	2.7	23	87	4	83	19	28	25	26	1.98
133484--133508	11	2.3	11	100	0	50	40	0	8	52	1.31
133893--133979	3	29.0	3	97	0	102	33	9	0	57	1.30
135074--135117	23	1.9	23	85	0	61	34	2	2	61	1.21
135245--135297	20	2.5	22	76	11	58	26	3	5	64	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135341--135376	3	12.0	3	100	0	72	33	0	0	66	0.92
136226--136265	19	2.1	19	100	0	80	32	27	10	30	1.89
136423--136559	4	34.2	4	92	0	229	25	3	24	45	1.69
136500--136897	16	24.8	16	86	5	102	16	10	33	39	1.83
136557--136742	8	23.8	8	87	4	227	10	22	39	27	1.87
136745--136796	2	26.0	2	84	0	68	7	0	42	50	1.31
136745--136804	10	6.0	10	84	0	66	10	0	40	50	1.36
136752--136907	4	39.5	4	92	2	235	20	0	29	49	1.54
140266--140436	35	4.9	35	85	7	204	36	18	23	21	1.95
140266--140436	71	2.4	70	87	2	218	36	18	23	21	1.95
144558--144664	28	3.8	28	91	0	169	15	19	28	36	1.93
155668--155760	21	4.4	21	73	10	73	38	23	15	22	1.92
157226--157293	30	2.3	30	75	12	77	38	11	2	47	1.55
168916--168995	2	40.0	2	100	0	160	50	0	0	50	1.00
171348--171386	14	2.8	14	84	11	53	0	20	7	71	1.10
171338--171435	28	3.5	27	75	14	83	4	16	8	71	1.26
180851--180884	18	1.9	18	88	5	52	26	29	26	17	1.98
183303--183370	24	3.0	23	74	19	63	33	0	1	64	1.02
183301--183365	8	8.0	8	72	16	53	33	0	1	64	1.03
183324--183365	17	2.4	19	80	15	54	33	0	2	64	1.07
194769--194802	17	2.0	17	88	0	50	47	0	2	50	1.16
194864--194937	27	2.7	27	80	10	89	50	1	0	48	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194887--194932	14	3.3	14	74	20	51	52	2	0	45	1.13
194980--195008	8	3.8	8	90	9	51	34	0	0	65	0.93
194971--195029	14	4.4	13	74	20	50	38	0	1	59	1.08
195009--195073	33	2.0	33	87	0	94	46	3	1	49	1.27
196514--196576	30	2.1	29	88	11	92	30	19	9	41	1.83
206711--207170	227	2.0	229	93	4	788	30	26	12	30	1.93

Tables:   1

The End!