Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004997.1 Hibiscus syriacus cultivar Beakdansim tig00011218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77739
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:1976 original size:29 final size:30
Alignment explanation
Indices: 1920--1981 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
1910 ATATAAAGCA
*
1920 TTGGGAATATTTTTTTAATTTAATTATAATT
1 TTGGGAATATTTTTTT-ATTCAATTATAATT
1951 TTGGGAATATTTTTTGT-TTCAA-TATAATT
1 TTGGGAATATTTTTT-TATTCAATTATAATT
1980 TT
1 TT
1982 AAAATTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 9 0.31
30 4 0.14
31 15 0.52
32 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGGGAATATTTTTTTATTCAATTATAATT
Found at i:2336 original size:19 final size:19
Alignment explanation
Indices: 2312--2359 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
2302 ATAACGGAGT
*
2312 CGTTGGTTAACGACGAAAA
1 CGTTGGTCAACGACGAAAA
2331 CGTTGGTCAACGACGAAAA
1 CGTTGGTCAACGACGAAAA
2350 CGTTGGTCAA
1 CGTTGGTCAA
2360 AAGATCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (19 bp):
CGTTGGTCAACGACGAAAA
Found at i:14033 original size:187 final size:185
Alignment explanation
Indices: 13669--14060 Score: 585
Period size: 187 Copynumber: 2.1 Consensus size: 185
13659 ATTAAATTTT
*
13669 AAATTTTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTCAATTAATAA
1 AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTCAATTAATAA
* * *
13734 TTTAAGATTCAATAAATTTTAAACCGAAATCAATATTAATTAATTAAAAATTTATATAAAATTTT
66 TTTAAGATCCAACAAATTTTAAACCGAAATCAATATTAATTAATTAAAAAATTATATAAAATTTT
*
13799 TATTTTATAATTATATATTATTTAAATTAATTGTAAATTGTTTTTTTTTGAATTAAA
131 TATTTTATAATTATATATTATTTAAATTAATTGTAAACTG-TTTTTTTT-AATTAAA
* *
13856 AAATATTAAATATATTATATATAACATATGGGCTCAGCCCTAATCATTTAAAAC-CTAATTAATA
1 AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTC-AATTAATA
* * * *
13920 ATTTAAGATCCAACAACTTTTAAACCTAAATCAATTTTAATTAATTAAAAAAATTATATACAATT
65 ATTTAAGATCCAACAAATTTTAAACCGAAATCAATATTAATTAATT-AAAAAATTATATAAAATT
13985 TTTATTTTATAATTATATATTATTTAAATTAATTAG-AAACTG-TTTTTTTAATTAAA
129 TTTATTTTATAATTATATATTATTTAAATTAATT-GTAAACTGTTTTTTTTAATTAAA
* * *
14041 AACTATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
14061 AATTAGAAAA
Statistics
Matches: 188, Mismatches: 14, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
184 8 0.04
185 16 0.09
186 8 0.04
187 100 0.53
188 55 0.29
189 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.43
Consensus pattern (185 bp):
AAATATTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTCAATTAATAA
TTTAAGATCCAACAAATTTTAAACCGAAATCAATATTAATTAATTAAAAAATTATATAAAATTTT
TATTTTATAATTATATATTATTTAAATTAATTGTAAACTGTTTTTTTTAATTAAA
Found at i:16970 original size:75 final size:76
Alignment explanation
Indices: 16873--17059 Score: 209
Period size: 75 Copynumber: 2.5 Consensus size: 76
16863 AAGTTAAAAA
* * *
16873 TCAAGACTCAAACAATAATATTAAGTTTAGAACATTAAAATCCATAA-ACAAACCACAATATTAA
1 TCAAGACTCAAACCATAATATTAAGTCTAGAACAATAAAATCCATAATA-AAACCACAATATTAA
*
16937 AATATCAAGT-T
65 AATATCAAATCT
* * * * * * *
16948 TCAAGATTAAAACCATAATATTAACTCTAAAATAATAAAATCCATAATAAAATCATAATATTAAA
1 TCAAGACTCAAACCATAATATTAAGTCTAGAACAATAAAATCCATAATAAAACCACAATATTAAA
* *
17013 GTGTCAAATCT
66 ATATCAAATCT
* *
17024 T-AAGACTCAAATCATAATATTAAGTCTAGAAAAATA
1 TCAAGACTCAAACCATAATATTAAGTCTAGAACAATA
17060 TTAAACCCAA
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
75 88 0.97
76 3 0.03
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.28
Consensus pattern (76 bp):
TCAAGACTCAAACCATAATATTAAGTCTAGAACAATAAAATCCATAATAAAACCACAATATTAAA
ATATCAAATCT
Found at i:17006 original size:11 final size:12
Alignment explanation
Indices: 16979--17007 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16969 TAACTCTAAA
16979 ATAATAAAATCC
1 ATAATAAAATCC
16991 ATAATAAAAT-C
1 ATAATAAAATCC
17002 ATAATA
1 ATAATA
17008 TTAAAGTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAATAAAATCC
Found at i:19127 original size:131 final size:131
Alignment explanation
Indices: 18859--19225 Score: 443
Period size: 131 Copynumber: 2.8 Consensus size: 131
18849 TAATTTTAAG
* * * *
18859 AGAGAAAACAATAATATATAATTATTTCCAATCAAGAATAAATGACCTCACATGCCTTAAAACAA
1 AGAGAAAACGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATGCCTTAAAGCAA
* * * * *
18924 TCATTTATTACT-CAATAGAAAAGAAGAGATATCACTATTTCGTCTTAAAATTCAATATCGATTC
66 TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATAGATTC
18988 A
131 A
* * ** * *
18989 AGTGAAAACGATAATATCTAATGATTTTTAATCTAGAATAAATGACCTCTCATACCTTAAAGCAA
1 AGAGAAAACGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATGCCTTAAAGCAA
*
19054 TAATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTAG-TT
66 TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATA-TAGATT
19118 CA
130 CA
* * * * * * *
19120 AGAGAAAACGGA-AATATCGAATTATTTCCAATCGAGAATAAAAGACGTCTTATGTCTTAAAGCG
1 AGAGAAAAC-GATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATGCCTTAAAGCA
* * * * *
19184 ATCATTTATTATTCCTACCGAAATGAAAAGATATTACTATTC
65 ATCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTC
19226 TCAATATCGA
Statistics
Matches: 200, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
130 66 0.33
131 130 0.65
132 4 0.02
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.31
Consensus pattern (131 bp):
AGAGAAAACGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTCTCATGCCTTAAAGCAA
TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATAGATTC
A
Found at i:21279 original size:3 final size:3
Alignment explanation
Indices: 21256--21367 Score: 179
Period size: 3 Copynumber: 37.3 Consensus size: 3
21246 ATAAATAAAA
* * * *
21256 AAT AAT ATT AAT TAT ACT AAT AAT AAT AAT TAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
21304 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
21352 AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT A
21368 GTGGGATGAA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 99 1.00
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:21772 original size:90 final size:92
Alignment explanation
Indices: 21588--21775 Score: 353
Period size: 90 Copynumber: 2.1 Consensus size: 92
21578 GCAGACTTGC
21588 TCCACTGCTACTCAGGGAAAATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
1 TCCACTGCTACTCAGGGAAAATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
21653 AAATCAGATCTCGAGATGTTAATTCAT
66 AAATCAGATCTCGAGATGTTAATTCAT
*
21680 TCCACTGCTACTCAGGGAAGATCAAATTTGGAAAGA-GGGATCTGTTCCGCTGCTT-TTCAAGAA
1 TCCACTGCTACTCAGGGAAAATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
21743 AAATCAGATCTCGAGATGTTAATTCAT
66 AAATCAGATCTCGAGATGTTAATTCAT
21770 TCCACT
1 TCCACT
21776 ATTCTTCAGG
Statistics
Matches: 95, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
90 41 0.43
91 19 0.20
92 35 0.37
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (92 bp):
TCCACTGCTACTCAGGGAAAATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
AAATCAGATCTCGAGATGTTAATTCAT
Found at i:21785 original size:90 final size:92
Alignment explanation
Indices: 21588--21796 Score: 343
Period size: 90 Copynumber: 2.3 Consensus size: 92
21578 GCAGACTTGC
* *
21588 TCCACTGCTACTCAGGGAAAATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
1 TCCACTGATACTCAGGGAAGATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
21653 AAATCAGATCTCGAGATGTTAATTCAT
66 AAATCAGATCTCGAGATGTTAATTCAT
*
21680 TCCACTGCTACTCAGGGAAGATCAAATTTGGAAAGA-GGGATCTGTTCCGCTGCTT-TTCAAGAA
1 TCCACTGATACTCAGGGAAGATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
21743 AAATCAGATCTCGAGATGTTAATTCAT
66 AAATCAGATCTCGAGATGTTAATTCAT
* *
21770 TCCACT-ATTCTTCAGGGAAGATTAAAT
1 TCCACTGATAC-TCAGGGAAGATCAAAT
21797 CAAGACAGAC
Statistics
Matches: 112, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
89 2 0.02
90 56 0.50
91 19 0.17
92 35 0.31
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (92 bp):
TCCACTGATACTCAGGGAAGATCAAATTTGGAAAGAGGGGATCTGTTCCGCTGCTTCTTCAAGAA
AAATCAGATCTCGAGATGTTAATTCAT
Found at i:26745 original size:24 final size:25
Alignment explanation
Indices: 26699--26745 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26689 CTCTACAAAG
*
26699 TTTTATAAGTTCATTCTTACTAAAA
1 TTTTATAAATTCATTCTTACTAAAA
26724 TTTTATAAATTCA-TCTTACTAA
1 TTTTATAAATTCATTCTTACTAA
26746 CTTAAAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (25 bp):
TTTTATAAATTCATTCTTACTAAAA
Found at i:31942 original size:21 final size:21
Alignment explanation
Indices: 31901--31945 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
31891 AAGTTTCTCA
*
31901 TTTTAGTTTATTTGTTGGGTT
1 TTTTAGTTTATTTGTTAGGTT
*
31922 TTTTTGTTTATTT-TGTAGGTT
1 TTTTAGTTTATTTGT-TAGGTT
31943 TTT
1 TTT
31946 GTCTTTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.09, C:0.00, G:0.20, T:0.71
Consensus pattern (21 bp):
TTTTAGTTTATTTGTTAGGTT
Found at i:44066 original size:21 final size:21
Alignment explanation
Indices: 44040--44088 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
44030 TTCATGAGAG
44040 GTGCAAATTATTATTTACTTA
1 GTGCAAATTATTATTTACTTA
44061 GTGCAAATTATTATTTACTTA
1 GTGCAAATTATTATTTACTTA
44082 GTGCAAA
1 GTGCAAA
44089 ATCTATGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (21 bp):
GTGCAAATTATTATTTACTTA
Found at i:47258 original size:17 final size:17
Alignment explanation
Indices: 47236--47274 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
47226 ATGTATTTAT
47236 TAATATTTCTAATAATA
1 TAATATTTCTAATAATA
* *
47253 TAATATTTTTAATATTA
1 TAATATTTCTAATAATA
47270 TAATA
1 TAATA
47275 ATATAGTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATATTTCTAATAATA
Found at i:47277 original size:25 final size:27
Alignment explanation
Indices: 47229--47279 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
47219 ATTTAAAATG
*
47229 TATTTATTAATATTTCTAATAATATAA
1 TATTTATTAATATTTATAATAATATAA
47256 TATTT-TTAATA-TTATAATAATATA
1 TATTTATTAATATTTATAATAATATA
47280 GTCAATCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 12 0.52
26 6 0.26
27 5 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTTATTAATATTTATAATAATATAA
Found at i:47385 original size:27 final size:26
Alignment explanation
Indices: 47337--47427 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 26
47327 TATATAATAA
***
47337 ATTATTAATAA-AAATTTTATTATTT
1 ATTATTAATAATAAATAACATTATTT
*
47362 ATTAATTTCATAA-AAATAACATTATTT
1 ATT-A-TTAATAATAAATAACATTATTT
*
47389 AATTATTAATAATAAATAATATTATTT
1 -ATTATTAATAATAAATAACATTATTT
47416 ATATATTTAATA
1 AT-TA-TTAATA
47428 TTTATATAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
25 3 0.06
26 9 0.17
27 33 0.61
28 9 0.17
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTATTAATAATAAATAACATTATTT
Found at i:47781 original size:26 final size:27
Alignment explanation
Indices: 47730--47782 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
47720 TAATCTTAAT
* *
47730 ATTTTATTTATAAATTATATAAATAAA
1 ATTTTAATAATAAATTATATAAATAAA
47757 ATTTTAATAATAAA-TATATAAATAAA
1 ATTTTAATAATAAATTATATAAATAAA
47783 TCATTCTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
ATTTTAATAATAAATTATATAAATAAA
Found at i:48274 original size:54 final size:54
Alignment explanation
Indices: 48215--48326 Score: 179
Period size: 54 Copynumber: 2.1 Consensus size: 54
48205 AATTGATAAG
*
48215 TTGAAATCCTTGAATCTTTATTTAATTTTGATATTCTAAGAAGATAGATTTCCC
1 TTGAAATCCTTGAATCTTTATTTAATTCTGATATTCTAAGAAGATAGATTTCCC
* * * *
48269 TTGAAATCCTTGAATTTTTATTTAATTCTGATCTTCTAAGAATATAGATTTCCT
1 TTGAAATCCTTGAATCTTTATTTAATTCTGATATTCTAAGAAGATAGATTTCCC
48323 TTGA
1 TTGA
48327 GTATAAACTC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.46
Consensus pattern (54 bp):
TTGAAATCCTTGAATCTTTATTTAATTCTGATATTCTAAGAAGATAGATTTCCC
Found at i:49320 original size:16 final size:16
Alignment explanation
Indices: 49299--49333 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
49289 TTAACTTTAT
49299 TTTAAAATTAAATTAA
1 TTTAAAATTAAATTAA
* *
49315 TTTAAATTTAAATTGA
1 TTTAAAATTAAATTAA
49331 TTT
1 TTT
49334 TTTCTCATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTAAAATTAAATTAA
Found at i:50362 original size:14 final size:13
Alignment explanation
Indices: 50333--50370 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
50323 TCAAAATGAA
50333 ATATTAAAAGAGT
1 ATATTAAAAGAGT
*
50346 ATATTAAAATTAGT
1 ATATTAAAA-GAGT
50360 ATATTAAAAGA
1 ATATTAAAAGA
50371 TAACCGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (13 bp):
ATATTAAAAGAGT
Found at i:56710 original size:77 final size:77
Alignment explanation
Indices: 56608--56840 Score: 229
Period size: 77 Copynumber: 3.0 Consensus size: 77
56598 TATGGGTGTG
* * * *
56608 CCCAATAATATCATGGTTCAATAAGAAATAAGTTGTGATATGTGATGTTAATATTTTTATTAAAA
1 CCCAATAATGTCATGGTTCACTAAGAAATAAGTTGCGATATGTGATGTTAATATTTTTATTAATA
*
56673 AAATATGTTGCA
66 AAATAGGTTGCA
* * * *
56685 CCTAATAATGTTATGGTTCACTAAGAAAATAGGTTGCGATCTGTAATGCAATGTTAATA-TTTT-
1 CCCAATAATGTCATGGTTCACTAAG-AAATAAGTTGCGATATG---TG--ATGTTAATATTTTTA
* * * *
56748 TTAATAGAATAGGATACG
60 TTAATAAAATAGGTTGCA
* ** *
56766 CCCAAAAATGTCATTATTCACTAAGAAATACA-TTGCGATATGTTATGTTAATATTTTTATTAAT
1 CCCAATAATGTCATGGTTCACTAAGAAATA-AGTTGCGATATGTGATGTTAATATTTTTATTAAT
56830 AAAATAGGTTG
65 AAAATAGGTTG
56841 TGCCAAAAAA
Statistics
Matches: 123, Mismatches: 24, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
75 9 0.07
76 4 0.03
77 35 0.28
78 14 0.11
80 14 0.11
81 34 0.28
82 4 0.03
83 9 0.07
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (77 bp):
CCCAATAATGTCATGGTTCACTAAGAAATAAGTTGCGATATGTGATGTTAATATTTTTATTAATA
AAATAGGTTGCA
Found at i:56987 original size:73 final size:73
Alignment explanation
Indices: 56910--57116 Score: 191
Period size: 74 Copynumber: 2.8 Consensus size: 73
56900 TATTATCGAC
* *
56910 ACTTTTAAATATTAAAAAATTTGAAGATAAAATCAAAATTTAAAATATCGATACTTATGAGGTAA
1 ACTTTTAAATATTAAAAAATTTGAAGATAAGATCAAAATTTAAAATATCGATACTTATGAGATAA
*
56975 TGATTTAT
66 TGATTAAT
* * ** * * * *
56983 ACTTTTAAAAATTGAAAAGGTTGATAGA-AAGATCGAAATTTTAAAATACCGATATTTATGCGAT
1 ACTTTTAAATATTAAAAAATTTGA-AGATAAGATC-AAAATTTAAAATATCGATACTTATGAGAT
*
57047 GATGATTAAT
64 AATGATTAAT
* * * * * * ** *
57057 ACTTTTAGATATTTAACAATTTGATGAATATGATCAATAGATAAAATATCGATACATATG
1 ACTTTTAAATATTAAAAAATTTGAAG-ATAAGATCAAAATTTAAAATATCGATACTTATG
57117 TTATGAGGTT
Statistics
Matches: 103, Mismatches: 27, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
73 26 0.25
74 72 0.70
75 5 0.05
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.36
Consensus pattern (73 bp):
ACTTTTAAATATTAAAAAATTTGAAGATAAGATCAAAATTTAAAATATCGATACTTATGAGATAA
TGATTAAT
Found at i:57444 original size:76 final size:76
Alignment explanation
Indices: 57344--57562 Score: 228
Period size: 76 Copynumber: 2.9 Consensus size: 76
57334 ACTTTTGCAT
* * * * * * *
57344 AAAAAGGTGCTACCTATTATATTATGATGAAAAACCT-ATTTGTCTTACTTTTATATAATTTAAA
1 AAAAAAGTGCTACCTAGTAGATTATCATGAAAAACATGATTTGTCTTAC-TTTACATAATATAAA
57408 CGGTTGACATTA
65 CGGTTGACATTA
** * *
57420 AAAAAAGTGCTACCTAGTAGATTATCATGAGCAACATGTTTTGTCTTACTTTGCATAATATAAAC
1 AAAAAAGTGCTACCTAGTAGATTATCATGAAAAACATGATTTGTCTTACTTTACATAATATAAAC
57485 GGTTGACATTA
66 GGTTGACATTA
* * * ** *
57496 AAAAAAGCGCTACTTAGTACG-TTAACATGAGCAACAT-ATTTTGTCTTACTTTTGCATAATATA
1 AAAAAAGTGCTACCTAGTA-GATTATCATGAAAAACATGA-TTTGTCTTAC-TTTACATAATATA
57559 AACG
63 AACG
57563 ATTTCATACT
Statistics
Matches: 124, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
76 96 0.77
77 28 0.23
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (76 bp):
AAAAAAGTGCTACCTAGTAGATTATCATGAAAAACATGATTTGTCTTACTTTACATAATATAAAC
GGTTGACATTA
Found at i:57467 original size:77 final size:77
Alignment explanation
Indices: 57382--57562 Score: 276
Period size: 76 Copynumber: 2.4 Consensus size: 77
57372 GAAAAACCTA
** * * *
57382 TTTGTCTTACTTTTATATAATTTAAACGGTTGACATTAAAAAAAGTGCTACCTAGTA-GATTATC
1 TTTGTCTTACTTTTGCATAATATAAACGGTTGACATTAAAAAAAGCGCTACCTAGTACG-TTAAC
*
57446 ATGAGCAACATGT
65 ATGAGCAACATAT
*
57459 TTTGTCTTAC-TTTGCATAATATAAACGGTTGACATTAAAAAAAGCGCTACTTAGTACGTTAACA
1 TTTGTCTTACTTTTGCATAATATAAACGGTTGACATTAAAAAAAGCGCTACCTAGTACGTTAACA
57523 TGAGCAACATAT
66 TGAGCAACATAT
57535 TTTGTCTTACTTTTGCATAATATAAACG
1 TTTGTCTTACTTTTGCATAATATAAACG
57563 ATTTCATACT
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
76 67 0.71
77 28 0.29
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (77 bp):
TTTGTCTTACTTTTGCATAATATAAACGGTTGACATTAAAAAAAGCGCTACCTAGTACGTTAACA
TGAGCAACATAT
Found at i:57994 original size:154 final size:155
Alignment explanation
Indices: 57788--58113 Score: 476
Period size: 154 Copynumber: 2.1 Consensus size: 155
57778 AGTATTGTTG
* * * *
57788 AAAGTATTGATACTTGGCAACTTTCTCATTTTTCATGTTTTTCTTTAAATTTGAAAGTATGGATA
1 AAAGTATCGATACTTTGCAACCTTCTCATTTTTCATGTTTTTCTTTAAATTTGAAAGTATCGATA
* **
57853 CTTTTGGAAAAGTAT-GCATACTTTCAAATTT-AAAAAAATTGGGAAATGATATTTTAACTTTCG
66 CTTTTGGAAAAGTATCG-ATACTTTCAAATTTAAAAAAAAATGAAAAATGATATTTTAACTTTCG
*
57916 AATTTAAAAGAATCGATACTTTTAGA
130 AATTTAAAAGAATCGATACTTTTACA
57942 AAAGTATCGATACTTTGCAACCTTCTCATTTTTCATGTTTTTCTTTAAATTTGAAAGTATCGATA
1 AAAGTATCGATACTTTGCAACCTTCTCATTTTTCATGTTTTTCTTTAAATTTGAAAGTATCGATA
* ** *
58007 TTTTTGGAAAAGTATCGATACTTTTGAATTTAAAAAAAAAATGAAAAATGATATTTTAACTTTTG
66 CTTTTGGAAAAGTATCGATACTTTCAAATTT-AAAAAAAAATGAAAAATGATATTTTAACTTTCG
** *
58072 AATTTAAAAGTTTCGATACTTTTTCA
130 AATTTAAAAGAATCGATACTTTTACA
*
58098 AAAATATCGATACTTT
1 AAAGTATCGATACTTT
58114 TTCAAAAATA
Statistics
Matches: 153, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
154 87 0.57
155 1 0.01
156 65 0.42
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (155 bp):
AAAGTATCGATACTTTGCAACCTTCTCATTTTTCATGTTTTTCTTTAAATTTGAAAGTATCGATA
CTTTTGGAAAAGTATCGATACTTTCAAATTTAAAAAAAAATGAAAAATGATATTTTAACTTTCGA
ATTTAAAAGAATCGATACTTTTACA
Found at i:58020 original size:20 final size:20
Alignment explanation
Indices: 57995--58032 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
57985 TTTAAATTTG
*
57995 AAAGTATCGATATTTTTGGA
1 AAAGTATCGATACTTTTGGA
58015 AAAGTATCGATACTTTTG
1 AAAGTATCGATACTTTTG
58033 AATTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (20 bp):
AAAGTATCGATACTTTTGGA
Found at i:58107 original size:20 final size:20
Alignment explanation
Indices: 58084--58133 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
58074 TTTAAAAGTT
58084 TCGATACTTTTTCAAAAATA
1 TCGATACTTTTTCAAAAATA
58104 TCGATACTTTTTCAAAAATA
1 TCGATACTTTTTCAAAAATA
58124 TCGATA-TTTT
1 TCGATACTTTT
58134 GCATCCTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (20 bp):
TCGATACTTTTTCAAAAATA
Found at i:58383 original size:77 final size:77
Alignment explanation
Indices: 58247--58530 Score: 326
Period size: 77 Copynumber: 3.7 Consensus size: 77
58237 TTCAACTTGC
* * * *
58247 TTTCTTAGTAAACCATAACATTCTTGTG-CGCAACCCATTTGT--TAATAAAAATATTAACATTT
1 TTTCTTAGTGAACAATGACATTCTTG-GACGCAACCCATTT-TACTAATAAAAATATTAACATTC
*
58309 CATATCGCAACCTA
64 CATATCGCAACATA
*
58323 TTTCTTAGTGAACCATGACATTCTTGGACGCAACCCATTTTACTAATAAAAATATTAACATTCCA
1 TTTCTTAGTGAACAATGACATTCTTGGACGCAACCCATTTTACTAATAAAAATATTAACATTCCA
* * * *
58388 GATTGTAACATG
66 TATCGCAACATA
* * *
58400 TTTCTTAGTGAACAATGACATTTTTGGGCGCAACCCATTTGACTAATAAAAATATTAACATTCCA
1 TTTCTTAGTGAACAATGACATTCTTGGACGCAACCCATTTTACTAATAAAAATATTAACATTCCA
*
58465 TATCACAACATA
66 TATCGCAACATA
* * * * * *
58477 TTTTTTAGTGAATAATGACAATATT-GAGTGCAA-CCATTTTATTAATAAAAATAT
1 TTTCTTAGTGAACAATGACATTCTTGGA-CGCAACCCATTTTACTAATAAAAATAT
58531 AAAAATATTA
Statistics
Matches: 179, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
75 2 0.01
76 56 0.31
77 121 0.68
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (77 bp):
TTTCTTAGTGAACAATGACATTCTTGGACGCAACCCATTTTACTAATAAAAATATTAACATTCCA
TATCGCAACATA
Found at i:58486 original size:154 final size:153
Alignment explanation
Indices: 58218--58530 Score: 409
Period size: 154 Copynumber: 2.0 Consensus size: 153
58208 TTTATAATTG
* * *
58218 AAAA-ATTAACATTCCAGATTTCAACTTGCTTTCTTAGTAAACCATAACATTCTTGTGCGCAACC
1 AAAATATTAACATTCCAGATTTCAACATGCTTTCTTAGTAAACAATAACATTCTTGGGCGCAACC
* * * * * * *
58282 CATTTGTTAATAAAAATATTAACATTTCATATCGCAACCTATTTCTTAGTGAACCATGACATTCT
66 CATTTGCTAATAAAAATATTAACATTCCATATCACAACATATTTCTTAGTGAACAATGACAATAT
58347 TG-GACGCAACCCATTTTACTAATA
131 TGAG-CGCAA-CCATTTTACTAATA
* * *
58371 AAAATATTAACATTCCAGATTGT-AACATG-TTTCTTAGTGAACAATGACATTTTTGGGCGCAAC
1 AAAATATTAACATTCCAGATT-TCAACATGCTTTCTTAGTAAACAATAACATTCTTGGGCGCAAC
* *
58434 CCATTTGACTAATAAAAATATTAACATTCCATATCACAACATATTTTTTAGTGAATAATGACAAT
65 CCATTTG-CTAATAAAAATATTAACATTCCATATCACAACATATTTCTTAGTGAACAATGACAAT
* *
58499 ATTGAGTGCAACCATTTTATTAATA
129 ATTGAGCGCAACCATTTTACTAATA
58524 AAAATAT
1 AAAATAT
58531 AAAAATATTA
Statistics
Matches: 139, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
153 60 0.43
154 77 0.55
155 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (153 bp):
AAAATATTAACATTCCAGATTTCAACATGCTTTCTTAGTAAACAATAACATTCTTGGGCGCAACC
CATTTGCTAATAAAAATATTAACATTCCATATCACAACATATTTCTTAGTGAACAATGACAATAT
TGAGCGCAACCATTTTACTAATA
Found at i:58815 original size:22 final size:20
Alignment explanation
Indices: 58796--58835 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
58786 AATTTTTTTA
58796 ATTCCACTTTATAACATTTTGT
1 ATTCCACTTT-TAAC-TTTTGT
*
58818 ATTCCTCTTTTAACTTTT
1 ATTCCACTTTTAACTTTT
58836 AAGATAGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.23, C:0.20, G:0.03, T:0.55
Consensus pattern (20 bp):
ATTCCACTTTTAACTTTTGT
Found at i:60403 original size:76 final size:75
Alignment explanation
Indices: 60312--60476 Score: 233
Period size: 76 Copynumber: 2.2 Consensus size: 75
60302 TTAAACTCAA
*
60312 ATTTAGGATAATATTTTAAACATTACAT-TTTATCTTTGTATTTTAGTTTAAATAGGTTTTTAGT
1 ATTTAGGATATTATTTT-AACATTACATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGT
60376 ATTTTAATTAAG
64 ATTTTAATTAAG
* * * **
60388 TTTTAGGATATTATTTTTATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
1 ATTTAGGATATTATTTTAACATTACATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
*
60453 TTTAATTAGG
66 TTTAATTAAG
*
60463 ATTTAGAATATTAT
1 ATTTAGGATATTAT
60477 ATTATTTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
75 36 0.46
76 43 0.54
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.56
Consensus pattern (75 bp):
ATTTAGGATATTATTTTAACATTACATCTTTATCTTTGTATTTTAGTTTAAATAGGTTTTAGTAT
TTTAATTAAG
Found at i:60462 original size:19 final size:19
Alignment explanation
Indices: 60434--60496 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
60424 TGTATTTTAG
*
60434 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
* *
60453 TTTAATTAGGATTTAGAAT
1 TTTAATTAGGTTTTAGTAT
* **
60472 ATTATATTATTTTTTAGGTAT
1 TTTA-ATTAGGTTTTA-GTAT
60493 TTTA
1 TTTA
60497 TTTTAAATAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 8 0.24
21 6 0.18
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:60552 original size:21 final size:20
Alignment explanation
Indices: 60497--60541 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
60487 AGGTATTTTA
*
60497 TTTTAAATA-GTTTTAAGTG
1 TTTTAATTAGGTTTTAAGTG
*
60516 TTTTAATTAGGATTTAAGATG
1 TTTTAATTAGGTTTTAAG-TG
60537 TTTTA
1 TTTTA
60542 GCTTGGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 7 0.32
21 7 0.32
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (20 bp):
TTTTAATTAGGTTTTAAGTG
Found at i:61133 original size:12 final size:13
Alignment explanation
Indices: 61116--61144 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
61106 CTCAATCTCT
61116 TTTATTTA-TTTA
1 TTTATTTATTTTA
61128 TTTATTTATTTTA
1 TTTATTTATTTTA
61141 TTTA
1 TTTA
61145 ATTGTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTATTTTA
Found at i:62937 original size:15 final size:15
Alignment explanation
Indices: 62913--62945 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
62903 CCAGCAGAAA
*
62913 AAGACGCACATCAGG
1 AAGACACACATCAGG
62928 AAGACACACATCAGG
1 AAGACACACATCAGG
62943 AAG
1 AAG
62946 TACAAGAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.24, T:0.06
Consensus pattern (15 bp):
AAGACACACATCAGG
Found at i:66883 original size:19 final size:19
Alignment explanation
Indices: 66845--66882 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
66835 CATTTCGTTA
*
66845 TATTTTTGTTTTTATTTTT
1 TATTTTCGTTTTTATTTTT
66864 TATTTTCG-TTTTATTTTT
1 TATTTTCGTTTTTATTTTT
66882 T
1 T
66883 TTAGCGAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.11, C:0.03, G:0.05, T:0.82
Consensus pattern (19 bp):
TATTTTCGTTTTTATTTTT
Found at i:67062 original size:53 final size:52
Alignment explanation
Indices: 66978--67091 Score: 183
Period size: 53 Copynumber: 2.2 Consensus size: 52
66968 AACGAAAAAA
*
66978 AACAGTGCAGAAAAACTGACTTGGTTCGAACTGTGCAGAAAAATTCGAACAG
1 AACAGTGCAGAAAAACTGACTTGGTTCGAACTGTGCAGAAAAATTCAAACAG
* * *
67030 AACAGTGCAGAAAAAACTGATTTGGTTTGAACTGTGCAGAAAAGTTCAAACAG
1 AACAGTGCAG-AAAAACTGACTTGGTTCGAACTGTGCAGAAAAATTCAAACAG
67083 AACAGTGCA
1 AACAGTGCA
67092 TCATCGGACA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 10 0.18
53 47 0.82
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (52 bp):
AACAGTGCAGAAAAACTGACTTGGTTCGAACTGTGCAGAAAAATTCAAACAG
Found at i:68789 original size:19 final size:19
Alignment explanation
Indices: 68761--68822 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
68751 TGTATTTTAG
*
68761 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
*
68780 TTTAATTAGGATTTAG-AT
1 TTTAATTAGGTTTTAGTAT
* **
68798 ATTATATTATTTTTTAGGTAT
1 TTTA-ATTAGGTTTTA-GTAT
68819 TTTA
1 TTTA
68823 GTTTAAATAG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
18 5 0.15
19 22 0.67
20 1 0.03
21 5 0.15
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:68795 original size:74 final size:74
Alignment explanation
Indices: 68641--68799 Score: 225
Period size: 74 Copynumber: 2.1 Consensus size: 74
68631 TTAAACTCAA
68641 ATTTAGGATAATATTTTAAACATTATATTTTATCTTTGTATTTAGTTTAAATAGGTTTTTAGTAT
1 ATTTAGGAT-ATATTTTAAACATTATATTTTATCTTTGTATTTAGTTTAAATAGGTTTTTAGTAT
68706 TTTAATTAAG
65 TTTAATTAAG
* * * *
68716 TTTTAGGATATATTTT-TATATTTTATCTTTATCTTTGTATTTTAGTTTAAATAGG-TTTTAGTA
1 ATTTAGGATATATTTTAAACATTATAT-TTTATCTTTGTA-TTTAGTTTAAATAGGTTTTTAGTA
*
68779 TTTTAATTAGG
64 TTTTAATTAAG
68790 ATTTA-GATAT
1 ATTTAGGATAT
68800 TATATTATTT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
73 12 0.16
74 41 0.54
75 23 0.30
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.56
Consensus pattern (74 bp):
ATTTAGGATATATTTTAAACATTATATTTTATCTTTGTATTTAGTTTAAATAGGTTTTTAGTATT
TTAATTAAG
Found at i:69525 original size:6 final size:6
Alignment explanation
Indices: 69516--69548 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
69506 AATATTATTA
*
69516 TTTTAT TTTT-T TTTTCT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
69549 TTTAATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTAT
Found at i:70613 original size:20 final size:20
Alignment explanation
Indices: 70551--70614 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
70541 AAATTTTGGT
70551 GAGCTTAACGAGCAATGAGAC
1 GAGCTTAACGAGCAA-GAGAC
*
70572 AAGC--AACGAGGCAAGTA-AC
1 GAGCTTAACGA-GCAAG-AGAC
*
70591 GAGCTTAACGAGCAAGAGTC
1 GAGCTTAACGAGCAAGAGAC
70611 GAGC
1 GAGC
70615 AAACTTTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
19 12 0.34
20 15 0.43
21 8 0.23
ACGTcount: A:0.39, C:0.20, G:0.30, T:0.11
Consensus pattern (20 bp):
GAGCTTAACGAGCAAGAGAC
Found at i:76034 original size:17 final size:17
Alignment explanation
Indices: 76012--76044 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76002 GGGTTACATC
76012 TAATGTATCGATACCTT
1 TAATGTATCGATACCTT
76029 TAATGTATCGATACCT
1 TAATGTATCGATACCT
76045 AGAAGCCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (17 bp):
TAATGTATCGATACCTT
Found at i:76142 original size:103 final size:103
Alignment explanation
Indices: 76003--76225 Score: 297
Period size: 103 Copynumber: 2.2 Consensus size: 103
75993 ATGGATTGCG
* * * * * *
76003 GGTTACATCTAATGTATCGATACCTTTAATGTATCGATACCTAGAAGCCAAGA-TGTACCGGTAC
1 GGTTACATCCAATGTATCAATACATGTAATGTATCGATACCTAGAAACCAA-ATTGTACCGATAC
76067 ACAAAAAGTATCGATACTGGCATATAACATTGTATTATA
65 ACAAAAAGTATCGATACTGGCATATAACATTGTATTATA
* * *
76106 GGTTACATCCGATGTATCAATACATGTATTGTATCGATACCTAGAAACTAAATTGTACCGATACA
1 GGTTACATCCAATGTATCAATACATGTAATGTATCGATACCTAGAAACCAAATTGTACCGATACA
* * *
76171 CCATAAGTATCGATACTGGCATATAACATTGTATTA-C
66 CAAAAAGTATCGATACTGGCATATAACATTGTATTATA
*
76208 GAGTTACATCCAACGTAT
1 G-GTTACATCCAATGTAT
76226 TGATACCTTT
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
102 2 0.02
103 102 0.98
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30
Consensus pattern (103 bp):
GGTTACATCCAATGTATCAATACATGTAATGTATCGATACCTAGAAACCAAATTGTACCGATACA
CAAAAAGTATCGATACTGGCATATAACATTGTATTATA
Done.