Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004998.1 Hibiscus syriacus cultivar Beakdansim tig00011219_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53966

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9560--9604
22
2.0
22
87
8
65
44
2
4
48
1.35
10385--10429
24
1.9
24
81
4
56
42
0
2
55
1.12
11721--11754
16
2.1
17
94
5
61
41
17
5
35
1.74
13685--13714
10
3.0
10
100
0
60
40
30
0
30
1.57
16189--16238
16
3.2
17
78
16
63
52
0
0
48
1.00
17603--17684
29
2.8
29
90
1
128
34
13
9
42
1.77
22367--22448
29
2.8
29
90
1
128
34
13
9
42
1.77
25528--25679
41
3.7
42
68
7
114
31
16
21
30
1.95
25592--25782
82
2.3
83
80
12
239
35
19
18
27
1.95
25601--25763
42
3.9
41
73
16
140
36
19
19
25
1.95
25768--25887
41
2.9
41
87
0
168
35
11
20
33
1.88
29129--29167
11
3.5
11
89
10
53
17
12
0
69
1.19
29506--29560
10
5.3
10
84
4
65
87
7
3
1
0.73
29499--29560
11
5.6
11
79
12
74
85
9
3
1
0.78
29499--29560
32
1.9
33
90
9
101
85
9
3
1
0.78
29499--29567
32
2.2
33
87
10
99
82
11
4
1
0.87
29500--29560
1
61.0
1
78
0
50
86
8
3
1
0.73
33867--33898
12
2.8
12
95
4
57
21
9
0
68
1.17
39555--39626
21
3.4
21
80
0
72
38
18
37
5
1.74
39621--39693
21
3.5
21
83
3
76
49
17
26
6
1.72
40086--40207
43
2.8
43
79
4
138
35
26
9
28
1.88
40205--40373
43
4.0
43
75
8
150
31
24
19
23
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40172--40378
43
4.8
43
74
7
145
32
24
18
24
1.97
41660--41912
31
8.2
31
96
0
470
33
15
12
38
1.86
42408--42631
64
3.5
64
80
4
211
28
18
20
33
1.96
44714--44798
16
5.4
16
64
25
56
31
16
12
38
1.87
44705--44833
31
4.2
31
97
0
240
34
16
12
37
1.86
45328--45553
64
3.5
65
82
3
235
27
18
21
32
1.97
46427--46481
26
2.1
26
83
6
67
52
16
3
27
1.60
50106--50155
3
16.7
3
100
0
100
32
0
0
68
0.90
51241--51292
23
2.2
24
86
3
70
28
3
1
65
1.21
52837--52881
7
6.3
7
85
14
65
13
2
0
84
0.72

Tables:   1

The End!