genome.fa.s5.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000005.1 Hibiscus syriacus cultivar Beakdansim tig00000011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90555

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2424--2476	20	2.7	19	88	5	79	24	11	15	49	1.77
5821--5880	21	2.7	22	80	12	61	36	8	25	30	1.85
14156--14201	23	2.0	23	100	0	92	26	26	30	17	1.97
17633--17673	21	1.9	20	85	14	55	56	0	7	36	1.27
20794--20866	31	2.4	31	85	0	92	31	16	21	30	1.95
20851--20920	31	2.3	31	84	0	95	30	24	14	31	1.94
21490--21547	17	3.4	17	71	21	50	34	1	1	62	1.16
23133--23162	2	15.0	2	100	0	60	50	0	0	50	1.00
27230--27254	13	1.9	13	100	0	50	44	16	8	32	1.76
30066--30117	26	2.0	26	100	0	104	30	0	11	57	1.34
30353--30391	16	2.5	16	91	4	62	38	20	2	38	1.66
31127--31192	3	22.3	3	75	9	55	54	0	6	39	1.25
31126--31220	39	2.5	36	81	10	102	52	0	4	43	1.20
41542--41619	38	2.1	38	100	0	156	23	32	17	26	1.97
45531--45565	18	2.0	17	88	5	52	11	34	22	31	1.90
45466--45755	107	2.7	106	86	4	386	25	17	18	38	1.92
56557--56633	31	2.5	31	82	2	100	28	31	25	14	1.95
56510--56633	63	2.0	63	82	6	153	26	29	27	16	1.97
57524--57581	5	10.8	5	75	14	53	6	20	51	20	1.70
57517--57581	22	3.0	22	95	0	121	9	21	49	20	1.76
57578--57705	9	13.3	9	78	11	121	29	28	27	14	1.95
57580--57685	19	5.5	19	79	12	110	29	29	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57603--57705	10	10.7	9	74	13	80	30	28	27	14	1.95
63935--64011	31	2.5	31	82	2	100	28	31	25	14	1.95
64882--64933	7	7.4	7	91	0	86	28	30	26	13	1.94
64968--65031	19	3.3	19	83	12	69	28	29	26	15	1.96
64994--65052	20	2.9	20	87	9	84	30	25	27	16	1.97
72012--72054	22	2.0	22	100	0	86	44	13	9	32	1.76
75362--75955	183	3.3	182	89	1	917	41	13	17	27	1.86
77922--77972	24	2.2	24	86	13	72	49	0	5	45	1.26
78241--78280	18	2.2	18	86	8	55	27	5	50	17	1.67
78208--78296	45	2.0	45	81	0	106	32	6	44	15	1.73
78322--78352	15	2.1	15	100	0	62	25	0	61	12	1.32
78626--78658	14	2.2	16	89	10	52	51	0	33	15	1.43
83585--84725	199	5.7	198	86	4	1497	40	13	14	31	1.85
87004--87049	23	2.0	24	82	4	58	34	17	13	34	1.88
87284--87333	23	2.2	23	88	0	73	30	22	10	38	1.86
87013--87320	135	2.3	135	90	0	472	33	13	12	40	1.82

Tables:   1

The End!