Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005000.1 Hibiscus syriacus cultivar Beakdansim tig00011221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93699
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Found at i:997 original size:55 final size:55
Alignment explanation
Indices: 928--1128 Score: 325
Period size: 55 Copynumber: 3.7 Consensus size: 55
918 TTTGTATGAG
* *
928 TGTGTATCGGTACACT-GAGGAGTGTATCGATACCCTCAAAACATCGAATGCCATT
1 TGTGTATCGATACACTAG-GGAGTGTATCGATACCCTCAAAACATCGAATGCTATT
983 TGTGTATCGATACACT-GAGGAGTGTATCGATACCCTCAAAACATCGAATGCTATT
1 TGTGTATCGATACACTAG-GGAGTGTATCGATACCCTCAAAACATCGAATGCTATT
* *
1038 TATGTATCGATACACTAGGGAGTGTATCGATACCCTCAAAACATCAAATGCTATT
1 TGTGTATCGATACACTAGGGAGTGTATCGATACCCTCAAAACATCGAATGCTATT
*
1093 TGTGTATTGATACACTAGGGAGTGTATCGATACCCT
1 TGTGTATCGATACACTAGGGAGTGTATCGATACCCT
1129 TAAGTATGAA
Statistics
Matches: 139, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
55 138 0.99
56 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (55 bp):
TGTGTATCGATACACTAGGGAGTGTATCGATACCCTCAAAACATCGAATGCTATT
Found at i:1974 original size:28 final size:29
Alignment explanation
Indices: 1914--1974 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
1904 GTTGAGGGTT
*
1914 ATACGTGGTCCTACGAGACATATGTGTTC
1 ATACGTGGTCCTACGAGACATATGTGGTC
* *
1943 -TACGTGGTCCTTCGGGACATA-GTGGTC
1 ATACGTGGTCCTACGAGACATATGTGGTC
1970 ATACG
1 ATACG
1975 GGATAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (29 bp):
ATACGTGGTCCTACGAGACATATGTGGTC
Found at i:2317 original size:15 final size:16
Alignment explanation
Indices: 2297--2334 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
2287 GAGTTATATT
2297 ATATAT-TTAGGTCAA
1 ATATATCTTAGGTCAA
2312 ATATATGCTTAGGTCAA
1 ATATAT-CTTAGGTCAA
2329 ATATAT
1 ATATAT
2335 GCTCATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
17 15 0.71
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (16 bp):
ATATATCTTAGGTCAA
Found at i:2323 original size:17 final size:17
Alignment explanation
Indices: 2303--2337 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
2293 TATTATATAT
2303 TTAGGTCAAATATATGC
1 TTAGGTCAAATATATGC
2320 TTAGGTCAAATATATGC
1 TTAGGTCAAATATATGC
2337 T
1 T
2338 CATATGATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.37
Consensus pattern (17 bp):
TTAGGTCAAATATATGC
Found at i:3987 original size:34 final size:33
Alignment explanation
Indices: 3949--4086 Score: 98
Period size: 33 Copynumber: 4.3 Consensus size: 33
3939 AAATCAAAAT
3949 AGATAATAATATATTTTAATTTAAAATATTCAAA
1 AGATAATAATATATTTTAATTTAAAATATT-AAA
* * *
3983 AGAT-ATATATACATTTTACTATTAAAA-CTTAAA
1 AGATAATA-ATATATTTTAAT-TTAAAATATTAAA
4016 A-A-AAT-AT-TATTTTAATTTAAAATATTAGAA
1 AGATAATAATATATTTTAATTTAAAATATTA-AA
* *
4046 ATGAT-ATAAT-TATATTAATATT-TAA-ATTAAA
1 A-GATAATAATATATTTTAAT-TTAAAATATTAAA
4077 TAGATAATAA
1 -AGATAATAA
4087 ATACCCTTAA
Statistics
Matches: 84, Mismatches: 8, Indels: 26
0.71 0.07 0.22
Matches are distributed among these distances:
28 6 0.07
29 10 0.12
30 5 0.06
31 5 0.06
32 15 0.18
33 19 0.23
34 18 0.21
35 6 0.07
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.41
Consensus pattern (33 bp):
AGATAATAATATATTTTAATTTAAAATATTAAA
Found at i:11820 original size:22 final size:22
Alignment explanation
Indices: 11793--11834 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11783 CTGTTACATG
11793 TTTAATGCAAGAGTTACAAAGC
1 TTTAATGCAAGAGTTACAAAGC
* *
11815 TTTAATGTATGAGTTACAAA
1 TTTAATGCAAGAGTTACAAA
11835 TTGTTGTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (22 bp):
TTTAATGCAAGAGTTACAAAGC
Found at i:16366 original size:2 final size:2
Alignment explanation
Indices: 16361--16399 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
16351 TACTTGTGTG
16361 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16400 CTTACACATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17016 original size:21 final size:22
Alignment explanation
Indices: 16985--17034 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
16975 TTTGTGAGCT
16985 GTTAC-AAG-TTTAATGCAAGA
1 GTTACAAAGTTTTAATGCAAGA
* *
17005 GTTACAAAGTTTTATTGCATGA
1 GTTACAAAGTTTTAATGCAAGA
17027 GTTACAAA
1 GTTACAAA
17035 CTGTTGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 5 0.19
21 3 0.12
22 18 0.69
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (22 bp):
GTTACAAAGTTTTAATGCAAGA
Found at i:18972 original size:26 final size:26
Alignment explanation
Indices: 18942--19004 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
18932 ACGTGCTTTC
18942 ATGTTTATTTTATTTCCCACATTTTT
1 ATGTTTATTTTATTTCCCACATTTTT
18968 ATGTTTATTTTATTTCCCACATTTTT
1 ATGTTTATTTTATTTCCCACATTTTT
18994 ATGTTTATTTT
1 ATGTTTATTTT
19005 TTAAAAAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.19, C:0.13, G:0.05, T:0.63
Consensus pattern (26 bp):
ATGTTTATTTTATTTCCCACATTTTT
Found at i:21873 original size:15 final size:15
Alignment explanation
Indices: 21855--21887 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
21845 TCACTTTTAG
21855 ATTAATCAAAATAA-A
1 ATTAAT-AAAATAATA
21870 ATTAATAAAATAATA
1 ATTAATAAAATAATA
21885 ATT
1 ATT
21888 TCAATTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
ATTAATAAAATAATA
Found at i:22987 original size:36 final size:36
Alignment explanation
Indices: 22940--23008 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
22930 ACAGTTTTCG
* * *
22940 TAATGGCAGTTTGTAATGGTGGGTGAAAGCTTTTTA
1 TAATGACAGTTTGTAATGATGGATGAAAGCTTTTTA
*
22976 TAATGACAGTTTGTAATGATGGATGAACGCTTT
1 TAATGACAGTTTGTAATGATGGATGAAAGCTTT
23009 GATTTCCAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (36 bp):
TAATGACAGTTTGTAATGATGGATGAAAGCTTTTTA
Found at i:23058 original size:19 final size:19
Alignment explanation
Indices: 23034--23077 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
23024 TTTTAGGATG
* *
23034 TTATGTTGTAATGGTGGTA
1 TTATGTTGTAATGGTAGAA
23053 TTATGTTGTAATGGTAGAA
1 TTATGTTGTAATGGTAGAA
23072 TTATGT
1 TTATGT
23078 AATGAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (19 bp):
TTATGTTGTAATGGTAGAA
Found at i:23532 original size:21 final size:20
Alignment explanation
Indices: 23503--23541 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23493 GTAAATCGCG
23503 TTGCAATTTTCCAAATTCGAA
1 TTGCAA-TTTCCAAATTCGAA
*
23524 TTGCGATTTCCAAATTCG
1 TTGCAATTTCCAAATTCG
23542 CAACATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (20 bp):
TTGCAATTTCCAAATTCGAA
Found at i:23551 original size:20 final size:21
Alignment explanation
Indices: 23528--23586 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
23518 TTCGAATTGC
23528 GATTTCCAAATTCGCAACA-T
1 GATTTCCAAATTCGCAACACT
23548 GATTTCCAAATTCGCAACACT
1 GATTTCCAAATTCGCAACACT
23569 GAATTT-CAAATTCGCAAC
1 G-ATTTCCAAATTCGCAAC
23587 TCAATTTCTG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
20 19 0.51
21 14 0.38
22 4 0.11
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.29
Consensus pattern (21 bp):
GATTTCCAAATTCGCAACACT
Found at i:23594 original size:41 final size:40
Alignment explanation
Indices: 23529--23665 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 40
23519 TCGAATTGCG
*
23529 ATTTCCAAATTCGCAACAT-GATTTCCAAATTCGCAACACTGA
1 ATTT-CAAATTCGCAAC-TCGATTTCCGAATTCGCAACAC-GA
* * * *
23571 ATTTCAAATTCGCAACTCAATTTCTGAATTCGTAACGCGA
1 ATTTCAAATTCGCAACTCGATTTCCGAATTCGCAACACGA
* ** * * *
23611 ATTTTATTTTCACAACTCGATTTTCGAATTCACAACACGA
1 ATTTCAAATTCGCAACTCGATTTCCGAATTCGCAACACGA
* *
23651 ATTTTAATTTCGCAA
1 ATTTCAAATTCGCAA
23666 TAGGTTTTAG
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
40 46 0.60
41 27 0.35
42 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (40 bp):
ATTTCAAATTCGCAACTCGATTTCCGAATTCGCAACACGA
Found at i:24480 original size:12 final size:12
Alignment explanation
Indices: 24459--24492 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
24449 ACCACATTTC
*
24459 CAATACCAAACA
1 CAATATCAAACA
24471 CAATATCAAACA
1 CAATATCAAACA
*
24483 CAATCTCAAA
1 CAATATCAAA
24493 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:24669 original size:24 final size:24
Alignment explanation
Indices: 24616--24671 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
24606 CAGTATTCGA
24616 AATTTGATCTTGGTCAATACCCGG
1 AATTTGATCTTGGTCAATACCCGG
* * *
24640 ACTTTGATCTTGGTCAATACTCGT
1 AATTTGATCTTGGTCAATACCCGG
24664 AATTTGAT
1 AATTTGAT
24672 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (24 bp):
AATTTGATCTTGGTCAATACCCGG
Found at i:26966 original size:18 final size:18
Alignment explanation
Indices: 26932--26972 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26922 AAGCAAAAGG
**
26932 AAATCAAAATCGTAATCA
1 AAATCAAAATCCCAATCA
26950 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
*
26968 CAATC
1 AAATC
26973 GGCTTCACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.20
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:27173 original size:20 final size:20
Alignment explanation
Indices: 27148--27185 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27138 GTTGCGATTG
27148 TTGCGAAAGTCAAATTCGCA
1 TTGCGAAAGTCAAATTCGCA
**
27168 TTGCGATTGTCAAATTCG
1 TTGCGAAAGTCAAATTCG
27186 AAACACGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (20 bp):
TTGCGAAAGTCAAATTCGCA
Found at i:27219 original size:20 final size:20
Alignment explanation
Indices: 27196--27238 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
27186 AAACACGAAA
27196 TCGCAATGCGAATTTGACTT
1 TCGCAATGCGAATTTGACTT
** *
27216 TCGCGTTGCGAATTTGATTT
1 TCGCAATGCGAATTTGACTT
27236 TCG
1 TCG
27239 TGTTGTGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (20 bp):
TCGCAATGCGAATTTGACTT
Found at i:27243 original size:20 final size:20
Alignment explanation
Indices: 27202--27243 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
27192 GAAATCGCAA
27202 TGCGAATTTGACTTTCGCGT
1 TGCGAATTTGACTTTCGCGT
* *
27222 TGCGAATTTGATTTTCGTGT
1 TGCGAATTTGACTTTCGCGT
27242 TG
1 TG
27244 TGAAAGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.14, G:0.26, T:0.45
Consensus pattern (20 bp):
TGCGAATTTGACTTTCGCGT
Found at i:27407 original size:64 final size:64
Alignment explanation
Indices: 27306--27452 Score: 240
Period size: 64 Copynumber: 2.3 Consensus size: 64
27296 AATTTAAAAC
*
27306 AACAATTCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
*** * *
27370 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
27434 AACAAATCAACTTTTACAA
1 AACAAATCAACTTTTACAA
27453 TTACATCAAT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 77 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (64 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
Found at i:28837 original size:21 final size:20
Alignment explanation
Indices: 28811--28881 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 20
28801 GTGAATCGGG
28811 CTCTTGAACGGTGGGAGGGAC
1 CTCTTGAACGGTGGGAGGG-C
* **
28832 CTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTGGGA-GGGC
28853 CTCTTGAACGGTGGGAGAGGC
1 CTCTTGAACGGTGGGAG-GGC
28874 CTCTTGAA
1 CTCTTGAA
28882 GGATGATAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
20 1 0.02
21 38 0.90
22 3 0.07
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.21
Consensus pattern (20 bp):
CTCTTGAACGGTGGGAGGGC
Found at i:28877 original size:42 final size:42
Alignment explanation
Indices: 28811--28932 Score: 167
Period size: 42 Copynumber: 2.9 Consensus size: 42
28801 GTGAATCGGG
28811 CTCTTGAACGGTGGGAG-GGACCTCTTGAACGATGACAGGGGC
1 CTCTTGAACGGTGGGAGAGG-CCTCTTGAACGATGACAGGGGC
* *
28853 CTCTTGAACGGTGGGAGAGGCCTCTTGAAGGATGATAGGGGC
1 CTCTTGAACGGTGGGAGAGGCCTCTTGAACGATGACAGGGGC
* * *
28895 CTATTGAACGATAGGAGAGGCCT-TTCGAACGATGACAG
1 CTCTTGAACGGTGGGAGAGGCCTCTT-GAACGATGACAG
28933 ATGAATCGGG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
41 2 0.03
42 67 0.94
43 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.36, T:0.20
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGAGGCCTCTTGAACGATGACAGGGGC
Found at i:28916 original size:21 final size:20
Alignment explanation
Indices: 28811--28928 Score: 87
Period size: 21 Copynumber: 5.7 Consensus size: 20
28801 GTGAATCGGG
*
28811 CTCTTGAACGGTGG-GAGGGAC
1 CTCTTGAACGATGGAGA-GG-C
* *
28832 CTCTTGAACGATGACAGGGGC
1 CTCTTGAACGATG-GAGAGGC
*
28853 CTCTTGAACGGTGGGAGAGGC
1 CTCTTGAACGAT-GGAGAGGC
* * *
28874 CTCTTGAAGGATGATAGGGGC
1 CTCTTGAACGATG-GAGAGGC
*
28895 CTATTGAACGATAGGAGAGGC
1 CTCTTGAACGAT-GGAGAGGC
28916 CT-TTCGAACGATG
1 CTCTT-GAACGATG
28929 ACAGATGAAT
Statistics
Matches: 77, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
20 4 0.05
21 68 0.88
22 4 0.05
23 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.36, T:0.21
Consensus pattern (20 bp):
CTCTTGAACGATGGAGAGGC
Found at i:29235 original size:21 final size:21
Alignment explanation
Indices: 29211--29262 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
29201 TGCAACAATC
* * *
29211 TCACGTAGAGTGGCTACCTCA
1 TCACGTAAAGTAGATACCTCA
29232 TCACGTAAAGTAGATACCTCA
1 TCACGTAAAGTAGATACCTCA
*
29253 CCACGTAAAG
1 TCACGTAAAG
29263 CACAATTGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (21 bp):
TCACGTAAAGTAGATACCTCA
Found at i:29345 original size:63 final size:63
Alignment explanation
Indices: 29224--29346 Score: 140
Period size: 63 Copynumber: 2.0 Consensus size: 63
29214 CGTAGAGTGG
* * **
29224 CTACCTCATCACGTAAAGTAGATACCTCACCACGTAAAGCACAATTGTCATCGTGTAAAACCT
1 CTACCTCACCACGTAAAGTAGATACCTCACCACGCAAAGCACAATTGTCATCACGTAAAACCT
* * * * * *
29287 CTACCTCACCACGTAAAGATCG-TACCTCATCACGCCATGCACCATTGTCTTCACGTAAAA
1 CTACCTCACCACGTAAAG-TAGATACCTCACCACGCAAAGCACAATTGTCATCACGTAAAA
29347 TACCGATCTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
63 47 0.96
64 2 0.04
ACGTcount: A:0.33, C:0.32, G:0.12, T:0.24
Consensus pattern (63 bp):
CTACCTCACCACGTAAAGTAGATACCTCACCACGCAAAGCACAATTGTCATCACGTAAAACCT
Found at i:31099 original size:20 final size:20
Alignment explanation
Indices: 31074--31118 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
31064 ACTAAAATCG
31074 TGTTGCGATTTTCATTTTCA
1 TGTTGCGATTTTCATTTTCA
31094 TGTTGCGATTTTCATTTTCA
1 TGTTGCGATTTTCATTTTCA
31114 TGTTG
1 TGTTG
31119 TGAATTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.13, G:0.18, T:0.56
Consensus pattern (20 bp):
TGTTGCGATTTTCATTTTCA
Found at i:31132 original size:20 final size:20
Alignment explanation
Indices: 31074--31133 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
31064 ACTAAAATCG
* * *
31074 TGTTGCGATTTTCATTTTCA
1 TGTTGCGAATTTAAATTTCA
* * *
31094 TGTTGCGATTTTCATTTTCA
1 TGTTGCGAATTTAAATTTCA
*
31114 TGTTGTGAATTTAAATTTCA
1 TGTTGCGAATTTAAATTTCA
31134 AATAGTCTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.20, C:0.12, G:0.15, T:0.53
Consensus pattern (20 bp):
TGTTGCGAATTTAAATTTCA
Found at i:31682 original size:20 final size:20
Alignment explanation
Indices: 31657--31707 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
31647 GTGTTACGAA
*
31657 TTACAGATTCGCGTTGTGAT
1 TTACAGATTCGCGTTGCGAT
31677 TTACAGATTCGCGTTGCGAT
1 TTACAGATTCGCGTTGCGAT
*
31697 TTACATATTCG
1 TTACAGATTCG
31708 TGTTACGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
TTACAGATTCGCGTTGCGAT
Found at i:31747 original size:21 final size:21
Alignment explanation
Indices: 31732--31777 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
31722 AAATCACGTT
*
31732 GCGAATTTGGAAAATCGCAAC
1 GCGAATTTGGAAAATCACAAC
* *
31753 GCGAATTTGGAAAATCGCAAT
1 GCGAATTTGGAAAATCACAAC
31774 GCGA
1 GCGA
31778 TTTATATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (21 bp):
GCGAATTTGGAAAATCACAAC
Found at i:33332 original size:28 final size:28
Alignment explanation
Indices: 33300--33355 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
33290 ATATAAACTG
* *
33300 CCTCTAACTGTGATGCCACATTTAGTGC
1 CCTCTAACTATGATGCAACATTTAGTGC
*
33328 CCTCTAACTATGATGGAACATTTAGTGC
1 CCTCTAACTATGATGCAACATTTAGTGC
33356 TCTGTAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (28 bp):
CCTCTAACTATGATGCAACATTTAGTGC
Found at i:35881 original size:77 final size:77
Alignment explanation
Indices: 35750--36054 Score: 385
Period size: 77 Copynumber: 3.9 Consensus size: 77
35740 ATTACATATG
* *
35750 TAACATAGACTTGCACCAGTTAAATCATCACTTAATTCCAGTAGTGGTATATAACATATACTTAC
1 TAACATAGACTTACACCAGTTAAATCATCACTTAATTCCAGTAGTGGTATATAACATAGACTTAC
*
35815 ACCGGTGAAATT
66 ACCGGTGAAACT
* * * *
35827 TAATATAGACTTTCACCAGTTAAATCATCACTTAATTCCAATAGTGGTGTATAACATAGACTTAC
1 TAACATAGACTTACACCAGTTAAATCATCACTTAATTCCAGTAGTGGTATATAACATAGACTTAC
**
35892 ACATGTGAAACT
66 ACCGGTGAAACT
* * *
35904 TAACATAGACTTACTCCAGTTAAATCATCACTTAATTCTAGTAGTGGTTTATAACATAGACTTAA
1 TAACATAGACTTACACCAGTTAAATCATCACTTAATTCCAGTAGTGGTATATAACATAGACTT-A
* *
35969 CACTGGTGTAACT
65 CACCGGTGAAACT
* * * * *
35982 TAACATAGAGTTACACTAGTTAGTTAAATTTAACACTTAATTCCAGCAGTGGTATATAACATAGA
1 TAACATAGACTTACAC----CAGTTAAA-TCATCACTTAATTCCAGTAGTGGTATATAACATAGA
36047 CTTACACC
61 CTTACACC
36055 AGTAAAATCA
Statistics
Matches: 196, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
77 126 0.64
78 25 0.13
82 11 0.06
83 34 0.17
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.32
Consensus pattern (77 bp):
TAACATAGACTTACACCAGTTAAATCATCACTTAATTCCAGTAGTGGTATATAACATAGACTTAC
ACCGGTGAAACT
Found at i:40913 original size:34 final size:33
Alignment explanation
Indices: 40868--40944 Score: 129
Period size: 33 Copynumber: 2.3 Consensus size: 33
40858 AACTTAATTT
40868 AAAAATA-TTTTTTTATTTTTTATTTATAATTAA
1 AAAAATATTTTTTTTA-TTTTTATTTATAATTAA
*
40901 AAAAATATTTTTTTTATTTTTATTTATAATTTA
1 AAAAATATTTTTTTTATTTTTATTTATAATTAA
40934 AAAAATATTTT
1 AAAAATATTTT
40945 ATGTTAAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
33 34 0.81
34 8 0.19
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (33 bp):
AAAAATATTTTTTTTATTTTTATTTATAATTAA
Found at i:40958 original size:33 final size:33
Alignment explanation
Indices: 40888--40958 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
40878 TTTTATTTTT
* ***
40888 TATTTATAATTAAAAAAATATTTTTTTTATTTT
1 TATTTATAATTAAAAAAATATTTTTGTTATAAA
*
40921 TATTTATAATTTAAAAAATATTTTATGTTA-AAA
1 TATTTATAATTAAAAAAATATTTT-TGTTATAAA
40954 TATTT
1 TATTT
40959 TAAAGTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (33 bp):
TATTTATAATTAAAAAAATATTTTTGTTATAAA
Found at i:41169 original size:24 final size:24
Alignment explanation
Indices: 41106--41196 Score: 89
Period size: 24 Copynumber: 3.6 Consensus size: 24
41096 ATATATATTT
41106 TTAA-ATAAAAA-ATATTTTTAAA
1 TTAATATAAAAATATATTTTTAAA
*
41128 TTAAGTTAATAATTAAATATATTTATAAA
1 TTAA--T-ATAA--AAATATATTTTTAAA
41157 TTAATATAAAAATAT-TTTTTAAA
1 TTAATATAAAAATATATTTTTAAA
41180 GTTAATATATAAAATAT
1 -TTAATATA-AAAATAT
41197 TATGAATTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
22 4 0.07
23 7 0.12
24 14 0.24
25 7 0.12
26 8 0.14
27 1 0.02
28 3 0.05
29 14 0.24
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
TTAATATAAAAATATATTTTTAAA
Found at i:41533 original size:31 final size:31
Alignment explanation
Indices: 41495--41561 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
41485 ATTAATCCGT
41495 AGTGATCACATCTTAATTAAATAAAAACGAA
1 AGTGATCACATCTTAATTAAATAAAAACGAA
* * *
41526 AGTGATCATATTTTAATTAAATAAAAATGAA
1 AGTGATCACATCTTAATTAAATAAAAACGAA
41557 AGTGA
1 AGTGA
41562 CCATATTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (31 bp):
AGTGATCACATCTTAATTAAATAAAAACGAA
Found at i:41567 original size:31 final size:31
Alignment explanation
Indices: 41507--41568 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
41497 TGATCACATC
*
41507 TTAATTAAATAAAAACGAAAGTGATCATATT
1 TTAATTAAATAAAAACGAAAGTGACCATATT
*
41538 TTAATTAAATAAAAATGAAAGTGACCATATT
1 TTAATTAAATAAAAACGAAAGTGACCATATT
41569 ATGTTTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (31 bp):
TTAATTAAATAAAAACGAAAGTGACCATATT
Found at i:45007 original size:2 final size:2
Alignment explanation
Indices: 45002--45029 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
44992 TCACTTCATT
45002 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45030 CACTTACATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:48087 original size:58 final size:58
Alignment explanation
Indices: 48022--48255 Score: 447
Period size: 57 Copynumber: 4.1 Consensus size: 58
48012 AGTCGTACCT
48022 TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
1 TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
48080 TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
1 TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
48138 TA-TTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
1 TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
48195 TA-TTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
1 TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
48252 -ATTT
1 TATTT
48256 AGGTAATATA
Statistics
Matches: 175, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
56 1 0.01
57 114 0.65
58 60 0.34
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (58 bp):
TATTTTTTGACTCGGTTTGTCCCGAGGCTATCCTATCCGATGTATCCAATGACATTGA
Found at i:48393 original size:41 final size:42
Alignment explanation
Indices: 48348--48429 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 42
48338 AAGAATAATT
**
48348 AAAAGATTTAT-TTAATCCTTAC-GGTAGGAAAAAGTAAAACA
1 AAAAGATTT-TCTTAATCCTTACAACTAGGAAAAAGTAAAACA
*
48389 AAAAGATTTTCTTAATCCTTTCAACTAGGAAAAAGTAAAAC
1 AAAAGATTTTCTTAATCCTTACAACTAGGAAAAAGTAAAAC
48430 CTCATAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 1 0.03
41 19 0.53
42 16 0.44
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (42 bp):
AAAAGATTTTCTTAATCCTTACAACTAGGAAAAAGTAAAACA
Found at i:50237 original size:14 final size:14
Alignment explanation
Indices: 50218--50257 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
50208 CGATAATCTA
50218 TTCATTTATGTTCG
1 TTCATTTATGTTCG
* *
50232 TTCATTTATGCTGG
1 TTCATTTATGTTCG
*
50246 TTCGTTTATGTT
1 TTCATTTATGTT
50258 TATTTGTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.12, C:0.12, G:0.17, T:0.57
Consensus pattern (14 bp):
TTCATTTATGTTCG
Found at i:50417 original size:27 final size:26
Alignment explanation
Indices: 50353--50418 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 26
50343 TTTTAAATCC
*
50353 AAATAAAAAAATACTCAAATCAATTA
1 AAATAAAAAAATACTAAAATCAATTA
* * *
50379 AAA-AATATAAAATCCTAAAATTATTTGA
1 AAATAA-A-AAAATACTAAAATCAATT-A
50407 AAATAAAAAAAT
1 AAATAAAAAAAT
50419 TCTTCTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 19 0.59
28 5 0.16
29 2 0.06
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.26
Consensus pattern (26 bp):
AAATAAAAAAATACTAAAATCAATTA
Found at i:50462 original size:10 final size:10
Alignment explanation
Indices: 50449--50492 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
50439 ATTAAATTTC
50449 TGTTCGTTTA
1 TGTTCGTTTA
50459 TGTTCGTTTA
1 TGTTCGTTTA
* *
50469 CGTTTGTTTA
1 TGTTCGTTTA
*
50479 TGTTCGTTTT
1 TGTTCGTTTA
50489 TGTT
1 TGTT
50493 TATCTACGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.07, C:0.09, G:0.20, T:0.64
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:50493 original size:20 final size:20
Alignment explanation
Indices: 50449--50516 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
50439 ATTAAATTTC
* *
50449 TGTTCGTTTATGTTCGTTTA
1 TGTTTGTTTATGTTCGTTTT
*
50469 CGTTTGTTTATGTTCGTTTT
1 TGTTTGTTTATGTTCGTTTT
* * *
50489 TGTTTATCTACGTTCGTTTAT
1 TGTTTGTTTATGTTCGTTT-T
50510 T-TTTGTT
1 TGTTTGTT
50517 CATTTATAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 36 0.95
21 2 0.05
ACGTcount: A:0.09, C:0.10, G:0.18, T:0.63
Consensus pattern (20 bp):
TGTTTGTTTATGTTCGTTTT
Found at i:50501 original size:30 final size:30
Alignment explanation
Indices: 50449--50509 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50439 ATTAAATTTC
* * *
50449 TGTTCGTTTATGTTCGTTTACGTTTGTTTA
1 TGTTCGTTTATGTTCATCTACGTTCGTTTA
* *
50479 TGTTCGTTTTTGTTTATCTACGTTCGTTTA
1 TGTTCGTTTATGTTCATCTACGTTCGTTTA
50509 T
1 T
50510 TTTTGTTCAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.10, C:0.11, G:0.18, T:0.61
Consensus pattern (30 bp):
TGTTCGTTTATGTTCATCTACGTTCGTTTA
Found at i:57361 original size:24 final size:23
Alignment explanation
Indices: 57317--57361 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
57307 GTACTCAACG
* **
57317 TATAATTATATTTTAGTTAAAAA
1 TATAATCATATTTTAAATAAAAA
57340 TATAATCATAATTTTAAATAAA
1 TATAATCAT-ATTTTAAATAAA
57362 TCACAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 8 0.44
24 10 0.56
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TATAATCATATTTTAAATAAAAA
Found at i:57372 original size:16 final size:18
Alignment explanation
Indices: 57337--57370 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
57327 TTTTAGTTAA
*
57337 AAATATAATCATAATTTT
1 AAATATAATCACAATTTT
57355 AAATA-AATCACAATTT
1 AAATATAATCACAATTT
57371 AATTTAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATATAATCACAATTTT
Found at i:61332 original size:29 final size:29
Alignment explanation
Indices: 61299--61363 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
61289 TATTTAATTA
61299 TCGTATCGATAAGCATACAACGTCAATAC
1 TCGTATCGATAAGCATACAACGTCAATAC
61328 TCGTATCGATAAGCATACAACGTCAATAC
1 TCGTATCGATAAGCATACAACGTCAATAC
61357 TCGTATC
1 TCGTATC
61364 AAGCCTTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (29 bp):
TCGTATCGATAAGCATACAACGTCAATAC
Found at i:67663 original size:21 final size:20
Alignment explanation
Indices: 67618--67665 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
67608 AATTTGATTG
*
67618 AAATTATATTTCTTATTAATA
1 AAATT-TATTTCTAATTAATA
67639 AAATTTATTT-TAATTAGATA
1 AAATTTATTTCTAATTA-ATA
67659 CAAATTT
1 -AAATTT
67666 TCATGTGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.21
20 8 0.33
21 11 0.46
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (20 bp):
AAATTTATTTCTAATTAATA
Found at i:74662 original size:6 final size:6
Alignment explanation
Indices: 74651--74692 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
74641 ATATATTAAA
*
74651 AAAAAT AAAAAT AAAAAG AAAAA- AAAAAT -AAAAT AATAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT A
74693 TTAATAGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
5 10 0.31
6 17 0.53
7 5 0.16
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:74767 original size:18 final size:17
Alignment explanation
Indices: 74744--74789 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
74734 GTTTTCTTTA
*
74744 AAATAAAATATAACAATT
1 AAATAAAATA-AACAAAT
*
74762 AAATAAAATAAATAAAT
1 AAATAAAATAAACAAAT
74779 AAAT-AAATAAA
1 AAATAAAATAAA
74790 ATAGATTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 7 0.27
17 9 0.35
18 10 0.38
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAAAATAAACAAAT
Found at i:74784 original size:12 final size:13
Alignment explanation
Indices: 74761--74789 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
74751 ATATAACAAT
74761 TAAATAAAATAAA
1 TAAATAAAATAAA
74774 TAAAT-AAATAAA
1 TAAATAAAATAAA
74786 TAAA
1 TAAA
74790 ATAGATTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAAAATAAA
Found at i:75511 original size:75 final size:76
Alignment explanation
Indices: 75419--75588 Score: 245
Period size: 76 Copynumber: 2.2 Consensus size: 76
75409 ATACCTAAAA
*
75419 AAAATATAATATTCTAAATCCTAATTAAAATACT-AAAACCTATTTAAACTAAAATACAAAGATA
1 AAAA-ATAATATCCTAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATA
75483 AAGATAAAAT-AT
65 AA-ATAAAATGAT
* *
75495 AAAAATAATATCCTAAAACTTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAA
1 AAAAATAATATCCTAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAA
* *
75560 AATATAATGTT
66 AATAAAATGAT
* *
75571 TAAAATATTATCCTAAAT
1 AAAAATAATATCCTAAAT
75589 TTGAGTTTAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
75 32 0.38
76 52 0.62
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (76 bp):
AAAAATAATATCCTAAATCCTAATTAAAATACTAAAAACCTATTTAAACTAAAATACAAAGATAA
AATAAAATGAT
Found at i:77226 original size:53 final size:52
Alignment explanation
Indices: 77146--77259 Score: 192
Period size: 53 Copynumber: 2.2 Consensus size: 52
77136 TGTCCGATGA
77146 TGCACTGTTATGTTCGAACTTTTCTGCACAGTTCGAACCAAATCAGTTTTTTC
1 TGCACTGTTATGTTCGAACTTTTCTGCACAGTTCGAACCAAATCAG-TTTTTC
* * *
77199 TGCACTGTTCTGTTCGAATTTTTCTGCACAGTTCGAACCAAGTCAGTTTTTC
1 TGCACTGTTATGTTCGAACTTTTCTGCACAGTTCGAACCAAATCAGTTTTTC
77251 TGCACTGTT
1 TGCACTGTT
77260 TTTTTTCGTT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
52 15 0.26
53 43 0.74
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (52 bp):
TGCACTGTTATGTTCGAACTTTTCTGCACAGTTCGAACCAAATCAGTTTTTC
Found at i:77384 original size:19 final size:18
Alignment explanation
Indices: 77355--77392 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
77345 AGTTCGCTAA
*
77355 AAAAAATAAAACGAAAAT
1 AAAAAATAAAACAAAAAT
77373 AAAAAATAAAAACAAAAAT
1 AAAAAAT-AAAACAAAAAT
77392 A
1 A
77393 TAACGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.11
Consensus pattern (18 bp):
AAAAAATAAAACAAAAAT
Found at i:81295 original size:15 final size:15
Alignment explanation
Indices: 81275--81307 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81265 TCCTCTTGTA
*
81275 CTTCCTGATGTGTGT
1 CTTCCTGATGTGCGT
81290 CTTCCTGATGTGCGT
1 CTTCCTGATGTGCGT
81305 CTT
1 CTT
81308 TTTCTGCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.24, G:0.24, T:0.45
Consensus pattern (15 bp):
CTTCCTGATGTGCGT
Found at i:83095 original size:12 final size:13
Alignment explanation
Indices: 83072--83100 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
83062 AGATAACAAT
83072 TAAATAAAATAAA
1 TAAATAAAATAAA
83085 TAAAT-AAATAAA
1 TAAATAAAATAAA
83097 TAAA
1 TAAA
83101 AGAGATTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAAAATAAA
Found at i:83687 original size:21 final size:20
Alignment explanation
Indices: 83663--83709 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
83653 TTCAAAATCC
83663 TAAAACC-AAGCTAAAACATCT
1 TAAAACCTAA-CTAAAACA-CT
* *
83684 TAAATCCTAATTAAAACACT
1 TAAAACCTAACTAAAACACT
83704 TAAAAC
1 TAAAAC
83710 TATTTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 7 0.32
21 13 0.59
22 2 0.09
ACGTcount: A:0.53, C:0.21, G:0.02, T:0.23
Consensus pattern (20 bp):
TAAAACCTAACTAAAACACT
Found at i:83797 original size:75 final size:73
Alignment explanation
Indices: 83736--83873 Score: 215
Period size: 75 Copynumber: 1.9 Consensus size: 73
83726 CCTAAAAAAT
* *
83736 AATAATATTCTAAATCCTAATTAAAATACT-AAAACCTATTTAAACTAAAATACAAAGATAAAGA
1 AATAATATCCTAAAACCTAATT-AAATACTAAAAACCTATTTAAACT-AAATACAAAGATAAA-A
83800 TAAAATATAAA
63 TAAAATATAAA
*
83811 AATAATATCCTAAAACTTAATTAAATACTAAAAACCTATTTAAACTAAATACAAAGATAAAAT
1 AATAATATCCTAAAACCTAATTAAATACTAAAAACCTATTTAAACTAAATACAAAGATAAAAT
83874 GTAATGTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
73 2 0.03
74 22 0.37
75 35 0.59
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (73 bp):
AATAATATCCTAAAACCTAATTAAATACTAAAAACCTATTTAAACTAAATACAAAGATAAAATAA
AATATAAA
Found at i:85411 original size:21 final size:21
Alignment explanation
Indices: 85383--85422 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
85373 CATCTATCTT
85383 AAAAGTTA-AAAGAGGAATAC
1 AAAAGTTATAAAGAGGAATAC
*
85403 AAAATGTTATAAAGTGGAAT
1 AAAA-GTTATAAAGAGGAAT
85423 TAAAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.20, T:0.23
Consensus pattern (21 bp):
AAAAGTTATAAAGAGGAATAC
Found at i:85694 original size:12 final size:12
Alignment explanation
Indices: 85677--85706 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
85667 AGGAAATATG
85677 TTAATATTTTTA
1 TTAATATTTTTA
85689 TTAATATTTTTA
1 TTAATATTTTTA
85701 TTAATA
1 TTAATA
85707 AAATGGTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTAATATTTTTA
Found at i:85818 original size:77 final size:77
Alignment explanation
Indices: 85689--85976 Score: 353
Period size: 77 Copynumber: 3.8 Consensus size: 77
85679 AATATTTTTA
* * * * * * *
85689 TTAATATTTTTATTAATAAAAT-GGTTGCACTCAATATTGTCATTATTCACTAAAAAATATGTTG
1 TTAATATTTTTATTAGTAAAATGGGTTGCGCCCAAGAATGTCATTGTTCACTAAGAAATATGTTG
*
85753 TGATATGGAATG
66 CGATATGGAATG
* * * *
85765 TTAATATTTTTATTAGTCAAATGGGTTGCGCCCAAAAATGTCATTGTTCACTAAGAAACATGTTA
1 TTAATATTTTTATTAGTAAAATGGGTTGCGCCCAAGAATGTCATTGTTCACTAAGAAATATGTTG
* *
85830 CAATCTGGAATG
66 CGATATGGAATG
* * *
85842 TTAATATTTTTATTAGTAAAATGGGTTGCGTCCAAGAATGTCATGGTTCACTAAGAAATAGGTTG
1 TTAATATTTTTATTAGTAAAATGGGTTGCGCCCAAGAATGTCATTGTTCACTAAGAAATATGTTG
*
85907 CGATATGAAATG
66 CGATATGGAATG
** * * * *
85919 TTAATATTTTTATTAACAAAATGGGTTGCGCACAAGAATGTTATGGTTTACTAAGAAA
1 TTAATATTTTTATTAGTAAAATGGGTTGCGCCCAAGAATGTCATTGTTCACTAAGAAA
85977 GCAAGTTGAA
Statistics
Matches: 182, Mismatches: 29, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
76 20 0.11
77 162 0.89
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.37
Consensus pattern (77 bp):
TTAATATTTTTATTAGTAAAATGGGTTGCGCCCAAGAATGTCATTGTTCACTAAGAAATATGTTG
CGATATGGAATG
Found at i:85924 original size:154 final size:154
Alignment explanation
Indices: 85689--86005 Score: 410
Period size: 154 Copynumber: 2.1 Consensus size: 154
85679 AATATTTTTA
* * * * *
85689 TTAATATTTTTATTAATAAAATGGTTGCACTCAATATTGTCATTATTCACTAAAAAATATGTTGT
1 TTAATATTTTTATTAATAAAATGGTTGCACTCAAGAATGTCATGATTCACTAAAAAATAGGTTGC
* * * *
85754 GATATGGAATGTTAATATTTTTATTAGTC-AAATGGGTTGCGCCCAAAAATGTCATTGTTCACTA
66 GATATGAAATGTTAATATTTTTATTA-ACAAAATGGGTTGCGCACAAAAATGTCATGGTTCACTA
*
85818 AGAAA-CATGTT-ACAATCTGGAATG
130 AGAAAGCAAGTTGA-AATCTGGAATG
* * * *
85842 TTAATATTTTTATTAGTAAAATGGGTTGC-GTCCAAGAATGTCATGGTTCACTAAGAAATAGGTT
1 TTAATATTTTTATTAATAAAAT-GGTTGCACT-CAAGAATGTCATGATTCACTAAAAAATAGGTT
* * *
85906 GCGATATGAAATGTTAATATTTTTATTAACAAAATGGGTTGCGCACAAGAATGTTATGGTTTACT
64 GCGATATGAAATGTTAATATTTTTATTAACAAAATGGGTTGCGCACAAAAATGTCATGGTTCACT
85971 AAGAAAGCAAGTTGAAATCTGGAATG
129 AAGAAAGCAAGTTGAAATCTGGAATG
85997 TTAAT-TTTT
1 TTAATATTTT
86006 CAATTATAAA
Statistics
Matches: 142, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
153 23 0.16
154 97 0.68
155 21 0.15
156 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.38
Consensus pattern (154 bp):
TTAATATTTTTATTAATAAAATGGTTGCACTCAAGAATGTCATGATTCACTAAAAAATAGGTTGC
GATATGAAATGTTAATATTTTTATTAACAAAATGGGTTGCGCACAAAAATGTCATGGTTCACTAA
GAAAGCAAGTTGAAATCTGGAATG
Found at i:85959 original size:40 final size:39
Alignment explanation
Indices: 85837--85961 Score: 96
Period size: 40 Copynumber: 3.2 Consensus size: 39
85827 TTACAATCTG
*
85837 GAATGTTAATATTTTTATTAGTAAAATGGGTTGCGTC-CAA
1 GAATGTTAATATTTTTATTA-AAAAATGGGTTGCG-CACAA
* ** * * * * * *
85877 GAATG-TCAT-GGTTCACTAAGAAATAGGTTGCG-ATAT
1 GAATGTTAATATTTTTATTAAAAAATGGGTTGCGCACAA
85913 GAAATGTTAATATTTTTATTAACAAAATGGGTTGCGCACAA
1 G-AATGTTAATATTTTTATTAA-AAAATGGGTTGCGCACAA
85954 GAATGTTA
1 GAATGTTA
85962 TGGTTTACTA
Statistics
Matches: 60, Mismatches: 19, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
36 2 0.03
37 15 0.25
38 8 0.13
39 9 0.15
40 23 0.38
41 3 0.05
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (39 bp):
GAATGTTAATATTTTTATTAAAAAATGGGTTGCGCACAA
Found at i:86151 original size:20 final size:20
Alignment explanation
Indices: 86095--86144 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
86085 AGAAGGATGC
86095 AAAA-TATCGATATTTTTGA
1 AAAAGTATCGATATTTTTGA
86114 AAAAGTATCGATATTTTTGA
1 AAAAGTATCGATATTTTTGA
86134 AAAAGTATCGA
1 AAAAGTATCGA
86145 AACTTTTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (20 bp):
AAAAGTATCGATATTTTTGA
Found at i:86225 original size:20 final size:20
Alignment explanation
Indices: 86196--86233 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
86186 TTTTTAAATT
*
86196 CAAAAGTATCGATACTTTTC
1 CAAAAATATCGATACTTTTC
86216 CAAAAATATCGATACTTT
1 CAAAAATATCGATACTTT
86234 CAAATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (20 bp):
CAAAAATATCGATACTTTTC
Found at i:86284 original size:73 final size:73
Alignment explanation
Indices: 86198--86450 Score: 224
Period size: 73 Copynumber: 3.4 Consensus size: 73
86188 TTTAAATTCA
86198 AAAGTATCGATACTTTTCCAAAAATATCGATACTTTCAAATTTAAAGAAAAACATGAAAAATGAG
1 AAAGTATCGATACTTTTCCAAAAATATCGATACTTTCAAATTTAAAGAAAAACATGAAAAATGAG
*
86263 AAGGTTGC
66 AAAGTTGC
* * * * * *
86271 AAAGTATCGATACTTTTCTAAAAGTATCGATTCTTTTAAATTCGAAAGTTAAAATATCATTTCCC
1 AAAGTATCGATACTTTTCCAAAAATATCGATACTTTCAAATT-TAAAG--AAAA-A-CA--T--G
*** *** *
86336 AATTTTTTTAAATTTG-
57 AAAAATGAGAAAGTTGC
* *
86352 AAAGTAT-GCATACTTTTCCAAAAGTATCCATACTTTCAAATTTAAAGAAAAACATGAAAAATGA
1 AAAGTATCG-ATACTTTTCCAAAAATATCGATACTTTCAAATTTAAAGAAAAACATGAAAAATGA
86416 GAAAGTTGC
65 GAAAGTTGC
* *
86425 CAAGTATCAATACTTTT-CAACAAATA
1 AAAGTATCGATACTTTTCCAA-AAATA
86451 CTTACACTTT
Statistics
Matches: 137, Mismatches: 30, Indels: 26
0.71 0.16 0.13
Matches are distributed among these distances:
72 12 0.09
73 56 0.41
74 5 0.04
76 6 0.04
77 2 0.01
78 6 0.04
80 6 0.04
81 36 0.26
82 8 0.06
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (73 bp):
AAAGTATCGATACTTTTCCAAAAATATCGATACTTTCAAATTTAAAGAAAAACATGAAAAATGAG
AAAGTTGC
Found at i:86406 original size:154 final size:155
Alignment explanation
Indices: 86115--86444 Score: 484
Period size: 154 Copynumber: 2.1 Consensus size: 155
86105 TATTTTTGAA
* * **
86115 AAAGTATCGATATTTTTGAAAAAGTATCGAAACTTTTAAATTCAAAAGTTAAAATATCATTTTTC
1 AAAGTATCGATACTTTTCAAAAAGTATCGAAACTTTTAAATTCAAAAGTTAAAATATCATTTCCC
* *
86180 ATTTTTTTTTTAAATTCAAAAGTATCGATACTTTTCCAAAAATATCGATACTTTCAAATTTAAAG
66 A-TATTTTTTTAAATTCAAAAGTATCGATACTTTTCCAAAAATATCCATACTTTCAAATTTAAAG
*
86245 AAAAACATGAAAAATGAGAAGGTTGC
130 AAAAACATGAAAAATGAGAAAGTTGC
* ** *
86271 AAAGTATCGATACTTTTCTAAAAGTATCGATTCTTTTAAATTCGAAAGTTAAAATATCATTTCCC
1 AAAGTATCGATACTTTTCAAAAAGTATCGAAACTTTTAAATTCAAAAGTTAAAATATCATTTCCC
** *
86336 A-ATTTTTTTAAATTTGAAAGTAT-GCATACTTTTCCAAAAGTATCCATACTTTCAAATTTAAAG
66 ATATTTTTTTAAATTCAAAAGTATCG-ATACTTTTCCAAAAATATCCATACTTTCAAATTTAAAG
86399 AAAAACATGAAAAATGAGAAAGTTGC
130 AAAAACATGAAAAATGAGAAAGTTGC
* *
86425 CAAGTATCAATACTTTTCAA
1 AAAGTATCGATACTTTTCAA
86445 CAAATACTTA
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
153 1 0.01
154 97 0.62
156 58 0.37
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (155 bp):
AAAGTATCGATACTTTTCAAAAAGTATCGAAACTTTTAAATTCAAAAGTTAAAATATCATTTCCC
ATATTTTTTTAAATTCAAAAGTATCGATACTTTTCCAAAAATATCCATACTTTCAAATTTAAAGA
AAAACATGAAAAATGAGAAAGTTGC
Found at i:86868 original size:77 final size:77
Alignment explanation
Indices: 86668--86890 Score: 311
Period size: 77 Copynumber: 2.9 Consensus size: 77
86658 AGTATGAAAT
* ** * *
86668 CGTTTATATTATGCAAAAGTAAGACAAAATATGTTGCTCATGTTAACGTACTAAGTAGCGCTTTT
1 CGTTTATATTATGCAAAAGTAAGACAAAATATGTTGCTCATGATAATATACTAGGTAGCACTTTT
86733 TTTAATGTCAAC
66 TTTAATGTCAAC
*
86745 CGTTTATATTATGCAAAAGTAAGACAAAACATGTTGCTCATGATAATATACTAGGTAGCACTTTT
1 CGTTTATATTATGCAAAAGTAAGACAAAATATGTTGCTCATGATAATATACTAGGTAGCACTTTT
86810 TTTAATGTCAAC
66 TTTAATGTCAAC
* ** * ** * * *
86822 CGTTTAAATTATATAAAAGTAAGACAAAATAGGTTTTTCATCATAATATAATAGGTAGCACCTTT
1 CGTTTATATTATGCAAAAGTAAGACAAAATATGTTGCTCATGATAATATACTAGGTAGCACTTTT
86887 TTTA
66 TTTA
86891 TGCAAAAGTA
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
77 130 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (77 bp):
CGTTTATATTATGCAAAAGTAAGACAAAATATGTTGCTCATGATAATATACTAGGTAGCACTTTT
TTTAATGTCAAC
Found at i:87233 original size:74 final size:73
Alignment explanation
Indices: 87155--87326 Score: 177
Period size: 74 Copynumber: 2.3 Consensus size: 73
87145 GATCATATTC
* * * *
87155 ATCAAATTGTTAAATATCTAAAAGTATTAATCATCATCGCATAAATATCGGTATTTTAAAATTTC
1 ATCAAATT-TTAAATATTTAAAAGTATAAATCATCACCGCATAAATATCGATATTTT-AAATTTC
87220 GATCTT-TCT
64 GATCTTATCT
* * * * * * *
87229 ATCAACCTTTTCAATTTTTAAAAGTATAAATCATTACCTCATAAGTATCGATATTTTAAATTTTG
1 ATCAA-ATTTTAAATATTTAAAAGTATAAATCATCACCGCATAAATATCGATATTTTAAATTTCG
*
87294 ATTTTATCT
65 ATCTTATCT
*
87303 -TCAAATTTTTTAATATTTAAAAGT
1 ATCAAA-TTTTAAATATTTAAAAGT
87327 GTCGATAATA
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
73 31 0.39
74 47 0.59
75 2 0.03
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.44
Consensus pattern (73 bp):
ATCAAATTTTAAATATTTAAAAGTATAAATCATCACCGCATAAATATCGATATTTTAAATTTCGA
TCTTATCT
Found at i:87616 original size:77 final size:77
Alignment explanation
Indices: 87396--87625 Score: 223
Period size: 81 Copynumber: 2.9 Consensus size: 77
87386 TTTTTTGGCA
* **
87396 CAACCTATTTTATTAATAAAAATATTAACATAACATATCGCAA-TGTATTTCTTAGTGAATAATG
1 CAACCTATTTTATTAATAAAAATATTAACATCACATATCGCAACT-TATTTCTTAGTGAACCATG
* *
87460 ACATTTTTGGGCG
65 ACATTATTAGGCG
* * * * *
87473 TATCCTATTCTATT-A-AAAAATATTAACATTGCATTACAGATCGCAACCTATTTTCTTAGTGAA
1 CAACCTATTTTATTAATAAAAATATTAACA-T-C---ACATATCGCAACTTA-TTTCTTAGTGAA
* *
87536 CCATAACATTATTAGGTG
60 CCATGACATTATTAGGCG
* * * *
87554 CAACATATTTTTTTAATAAAAATATTAACATCACATATCACAACTTATTTCTTATTGAACCATGA
1 CAACCTATTTTATTAATAAAAATATTAACATCACATATCGCAACTTATTTCTTAGTGAACCATGA
*
87619 TATTATT
66 CATTATT
87626 GGGCACACCC
Statistics
Matches: 121, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
75 13 0.11
76 2 0.02
77 33 0.27
78 12 0.10
80 12 0.10
81 34 0.28
82 2 0.02
83 13 0.11
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.39
Consensus pattern (77 bp):
CAACCTATTTTATTAATAAAAATATTAACATCACATATCGCAACTTATTTCTTAGTGAACCATGA
CATTATTAGGCG
Done.