Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005001.1 Hibiscus syriacus cultivar Beakdansim tig00011222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75571
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:2769 original size:112 final size:114
Alignment explanation
Indices: 2459--2770 Score: 325
Period size: 116 Copynumber: 2.7 Consensus size: 114
2449 TTTGGTCATC
* * *
2459 ATCACATAAGGAGATGGATCAACATTTCCAATAGAAGGGTTCATAATGAGGAGAACTCATCCCAT
1 ATCACAGAAGGAGATGGATCAACATTTCCAATGGAAGGGTTCATAATGA--AGAACTCGT-CCAT
* * * * * * * *
2524 GAGGGAGAATAAGTTCCTGATG-AGAAGAGCTTGGTCAACCTTGGTTTGTCC
63 GAGGGAGAAAAAATTCCTAATGAAAAAGAACTTGGTAAACCTTGGTTCGTCA
* * * *
2575 ATCACAGAAGGAGATGGATCAACGTTTCTAATGGAAGAGTTCATAATGAGAATAACTCGTCCGAT
1 ATCACAGAAGGAGATGGATCAACATTTCCAATGGAAGGGTTCATAAT--GAAGAACTCGTCC-AT
* * * *
2640 GAGGGAGAAGAAA----TAATGAAAAATAAC-TGTTAAACCTTGGTTCGTTA
63 GAGGGAGAAAAAATTCCTAATGAAAAAGAACTTGGTAAACCTTGGTTCGTCA
*
2687 ATCACAGAAGGAGATGGATCAACATTTCCAA-GGAAGGGTTCATAATGAAGAACTCGTTC-TGAG
1 ATCACAGAAGGAGATGGATCAACATTTCCAATGGAAGGGTTCATAATGAAGAACTCGTCCATGAG
2750 GGAGAAAAAAATTCCTAATGA
66 GGAG-AAAAAATTCCTAATGA
2771 TAGAACTTGT
Statistics
Matches: 163, Mismatches: 24, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
107 8 0.05
108 5 0.03
109 11 0.07
111 14 0.09
112 54 0.33
113 5 0.03
115 2 0.01
116 62 0.38
118 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (114 bp):
ATCACAGAAGGAGATGGATCAACATTTCCAATGGAAGGGTTCATAATGAAGAACTCGTCCATGAG
GGAGAAAAAATTCCTAATGAAAAAGAACTTGGTAAACCTTGGTTCGTCA
Found at i:2923 original size:35 final size:38
Alignment explanation
Indices: 2879--3001 Score: 114
Period size: 38 Copynumber: 3.3 Consensus size: 38
2869 AAAAACTTTG
* *
2879 TCTCACTCGAGATTG-TTTTCTT-AAAAC-AAATTTTA
1 TCTCACTCGAGACTGTTTTTCTTAAAAACAAAATTTCA
*
2914 TCTCTCTCGAGACTGTTTTTCTTAAAAACAAAATTTCA
1 TCTCACTCGAGACTGTTTTTCTTAAAAACAAAATTTCA
* * *
2952 TCTCACAT-GAGACAGTTTTAT-TT-GAAACAAATATTTTA
1 TCTCAC-TCGAGACTGTTTT-TCTTAAAAACAAA-ATTTCA
*
2990 TCTCACTTGAGA
1 TCTCACTCGAGA
3002 TAGTTTCCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
35 13 0.18
36 7 0.09
37 13 0.18
38 39 0.53
39 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.40
Consensus pattern (38 bp):
TCTCACTCGAGACTGTTTTTCTTAAAAACAAAATTTCA
Found at i:2964 original size:38 final size:36
Alignment explanation
Indices: 2894--3007 Score: 115
Period size: 38 Copynumber: 3.1 Consensus size: 36
2884 CTCGAGATTG
* *
2894 TTTTCTTAAAAC-AAATTTTATCTCTCTCGAGACTGT
1 TTTTCTTAAAACAAAATTTTATCTCACT-GAGACAGT
*
2930 TTTTCTTAAAAACAAAATTTCATCTCACATGAGACAGT
1 TTTTCTT-AAAACAAAATTTTATCTCAC-TGAGACAGT
* *
2968 TTTAT-TTGAAACAAATATTTTATCTCACTTGAGATAGT
1 TTT-TCTTAAAACAAA-ATTTTATCTCAC-TGAGACAGT
3006 TT
1 TT
3008 CCCTTGAATA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
36 7 0.11
37 12 0.18
38 45 0.68
39 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (36 bp):
TTTTCTTAAAACAAAATTTTATCTCACTGAGACAGT
Found at i:3015 original size:38 final size:37
Alignment explanation
Indices: 2939--3015 Score: 91
Period size: 38 Copynumber: 2.1 Consensus size: 37
2929 TTTTTCTTAA
* *
2939 AAACAAAATTTCATCTCACATGAGACAGTTTTATTTG
1 AAACAAAATTTCATCTCACATGAGACAGTTTCACTTG
* * * *
2976 AAACAAATATTTTATCTCACTTGAGATAGTTTCCCTTG
1 AAACAAA-ATTTCATCTCACATGAGACAGTTTCACTTG
3014 AA
1 AA
3016 TAGTTTCCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
37 7 0.21
38 26 0.79
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (37 bp):
AAACAAAATTTCATCTCACATGAGACAGTTTCACTTG
Found at i:3020 original size:14 final size:15
Alignment explanation
Indices: 2995--3026 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
2985 TTTTATCTCA
2995 CTTGAGATAGTTTCC
1 CTTGAGATAGTTTCC
3010 CTTGA-ATAGTTTCC
1 CTTGAGATAGTTTCC
3024 CTT
1 CTT
3027 AAAACAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (15 bp):
CTTGAGATAGTTTCC
Found at i:5181 original size:3 final size:3
Alignment explanation
Indices: 5173--5209 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
5163 TTTAGATATA
5173 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
5210 ATATGATAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:6741 original size:3 final size:3
Alignment explanation
Indices: 6733--6766 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
6723 TTTAGATATA
* *
6733 CTT CTT CTT ATT CTT CGT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
6767 ATATGATAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.32, G:0.03, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:8417 original size:12 final size:12
Alignment explanation
Indices: 8400--8425 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8390 TATTATTATG
8400 TATTAATCTACA
1 TATTAATCTACA
8412 TATTAATCTACA
1 TATTAATCTACA
8424 TA
1 TA
8426 CTTACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
TATTAATCTACA
Found at i:15137 original size:19 final size:20
Alignment explanation
Indices: 15106--15144 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
15096 AACAATTTAA
15106 AAAAATCAAATAAAA-AAAT
1 AAAAATCAAATAAAATAAAT
15125 AAAAA-CAACATAAAATAAAT
1 AAAAATCAA-ATAAAATAAAT
15145 TAAAGTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 11 0.61
20 4 0.22
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAAATCAAATAAAATAAAT
Found at i:15148 original size:21 final size:20
Alignment explanation
Indices: 15106--15162 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
15096 AACAATTTAA
15106 AAAAATCAA-ATAAAA-AAAT
1 AAAAA-CAACATAAAATAAAT
15125 AAAAACAACATAAAATAAATT
1 AAAAACAACATAAAATAAA-T
*
15146 AAAGTA-AACATAAAATA
1 AAA-AACAACATAAAATA
15163 TGAGGACCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 3 0.09
19 11 0.33
20 3 0.09
21 15 0.45
22 1 0.03
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.18
Consensus pattern (20 bp):
AAAAACAACATAAAATAAAT
Found at i:16997 original size:98 final size:98
Alignment explanation
Indices: 16828--17160 Score: 533
Period size: 98 Copynumber: 3.4 Consensus size: 98
16818 GAAGGACTTA
*
16828 TTCATCAAGAAACCCTTGAAAATCAAGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAG
1 TTCATCAAGAAACCCTTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAG
* *
16893 GCTTAGCTTACTTTAAAAAAATCATTGAAAATC
66 GCTTAGCTTCCTTTTAAAAAATCATTGAAAATC
* ** *
16926 TTCATAAAGAAACCAGTGAAAATCAGGCTTAGTTTCTTAGTTGTCAATGAACCCCTAAAAATTAG
1 TTCATCAAGAAACCCTTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAG
*
16991 GCTTAGCTTCCTTTTAAAAACTCATTGAAAATC
66 GCTTAGCTTCCTTTTAAAAAATCATTGAAAATC
* * *
17024 TTCATCTAGAAACCCTTGAAAATCAGGCTTAGATTCTTACTTGTCAAGGAACCCCTAAAAATTAG
1 TTCATCAAGAAACCCTTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAG
*
17089 GCTTAGCTTCCTTTTAAAAATTCATTGGAAAAT-
66 GCTTAGCTTCCTTTTAAAAAATCATT-GAAAATC
*
17122 TTCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTA
1 TTCATCAAGAAACCCTTGAAAATCAGGCTTAGTTTCTTA
17161 AAATCTTTTG
Statistics
Matches: 215, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
98 209 0.97
99 6 0.03
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (98 bp):
TTCATCAAGAAACCCTTGAAAATCAGGCTTAGTTTCTTAGTTGTCAAGGAACCCCTAAAAATTAG
GCTTAGCTTCCTTTTAAAAAATCATTGAAAATC
Found at i:17202 original size:39 final size:39
Alignment explanation
Indices: 17159--18027 Score: 1195
Period size: 39 Copynumber: 22.3 Consensus size: 39
17149 CTTAGTTTCT
*
17159 TAAAATCTTTTGTTTCGAGTGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
17198 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
17237 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * * *
17276 TAAAATCTTCTATTTCAAGGGAAACTATCTCAAGCAAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* *
17315 CAAAATCTTCTGTTTTGA-TGGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGT-GAAACTATCTCAAGCGAGA
* * *
17354 TAAAATCTTCTGTTTTGAGAGAAACTATCTCAAGGGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* *
17393 TAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGTGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
** * * *
17432 TAAAATCTTCTAATTCAAGGGAAACTAGCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * * * *
17471 TAAAATCTTTTGTTTCGAGGGACATTATCTCAATCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
*
17510 TAAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * * * *
17549 CAAAATCTTATGTTTCAACTGAAACTATCTCAAGTGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * *
17588 TAAAATCTTTTGTTTCAAAG-GAAACTATCTCAAGTGAGA
1 TAAAATCTTCTGTTTC-GAGTGAAACTATCTCAAGCGAGA
*
17627 TAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
*
17666 TAAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* *
17705 TAAAATCTTCTGTTTCGAGGGAAATTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * *
17744 TAAAATCTTATATTTCCAGTGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
*
17783 TAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
*
17822 TAAAATCTTCTGTTTCGAGGGAAACTATCTCAAGCGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * * *
17861 TAAAATCTTCTATTTCGAGGGAAACTATCTAAAGCAAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* * * *
17900 TAAAATCTTCTATTTAGAGTGAAACTACCTCAAGTGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
* *
17939 TAAAATCTTCTGTTTCGTGT-AATACTATCTCAAGCAAGA
1 TAAAATCTTCTGTTTCGAGTGAA-ACTATCTCAAGCGAGA
* * * * *
17978 TAAAATTTTATATTTCGAGTGAAACTATCCCAAGAGAGA
1 TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
18017 TAAAATCTTCT
1 TAAAATCTTCT
18028 TTAAAAACAA
Statistics
Matches: 740, Mismatches: 84, Indels: 12
0.89 0.10 0.01
Matches are distributed among these distances:
38 4 0.01
39 732 0.99
40 4 0.01
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (39 bp):
TAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGA
Found at i:18123 original size:76 final size:76
Alignment explanation
Indices: 18030--18419 Score: 518
Period size: 76 Copynumber: 5.1 Consensus size: 76
18020 AATCTTCTTT
* *
18030 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTTTTTCAAGTGAGACAAAT
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTGTTTCAAGCGAGACAAAT
*
18095 CTAGTTTTAAG
66 CTTGTTTTAAG
* * * * * * *
18106 AAAAACAATCTTAAGTGAAATGAAATATGTTCTTTTGAGTAAAAACTG-TCCTAAGGGAGACAAT
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTGTTTC-AAGCGAGACAAA
18170 TCTTGTTTTAAG
65 TCTTGTTTTAAG
* * * *
18182 GAAAACAATCTTGAGTGAAATGATATGTCTTCTTTCGAGTAAAAAATGTTTCAAGCGAAACAAAT
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTGTTTCAAGCGAGACAAAT
18247 CTTGTTTTAA-
66 CTTGTTTTAAG
* *
18257 AGAAAACAATCTTGAGTGAAATGAAATATCTTCTTTCAAGTAAAAACTGTTTCAAGCGAGACAAA
1 A-AAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTGTTTCAAGCGAGACAAA
18322 TCTTGTTTTAAG
65 TCTTGTTTTAAG
* * * * * * *
18334 ATAAACAATCTTGAGTTAAAGGAAATGTCTTATTTCGGGT-AAAACTATCTCAAGCGAGACAAAG
1 AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTGTTTCAAGCGAGACAAA-
18398 T-TTGTTTTAAG
65 TCTTGTTTTAAG
18409 AAAAACAATCT
1 AAAAACAATCT
18420 CAAGTGAGAT
Statistics
Matches: 273, Mismatches: 36, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
75 43 0.16
76 227 0.83
77 3 0.01
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (76 bp):
AAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAGTAAAAACTGTTTCAAGCGAGACAAAT
CTTGTTTTAAG
Found at i:18151 original size:40 final size:40
Alignment explanation
Indices: 18029--18303 Score: 118
Period size: 39 Copynumber: 7.2 Consensus size: 40
18019 AAATCTTCTT
* * *
18029 TAAAAACAATCTTGAGTGAAATGAAATGTCTTCTTTCGAG
1 TAAAAACAATCTTAAGTGAAATGAAATATCTTCTTTTGAG
* * ** *
18069 TAAAAAC-TTTTTCAAGTG--A-GACAA-ATCTAGTTTTAAG
1 TAAAAACAATCTT-AAGTGAAATGA-AATATCTTCTTTTGAG
*
18106 -AAAAACAATCTTAAGTGAAATGAAATATGTTCTTTTGAG
1 TAAAAACAATCTTAAGTGAAATGAAATATCTTCTTTTGAG
** * * * *
18145 TAAAAACTGTCCTAAG-G-GA-GACAAT-TCTTGTTTTAAG
1 TAAAAACAATCTTAAGTGAAATGA-AATATCTTCTTTTGAG
* * * * *
18182 -GAAAACAATCTTGAGTGAAATGATATGTCTTCTTTCGAG
1 TAAAAACAATCTTAAGTGAAATGAAATATCTTCTTTTGAG
* * * *
18221 T-AAAA-AATGTTTCAAGCGAAA--CAA-ATCTTGTTTT-A-
1 TAAAAACAAT-CTT-AAGTGAAATGAAATATCTTCTTTTGAG
* * **
18256 AAGAAAACAATCTTGAGTGAAATGAAATATCTTCTTTCAAG
1 TA-AAAACAATCTTAAGTGAAATGAAATATCTTCTTTTGAG
18297 TAAAAAC
1 TAAAAAC
18304 TGTTTCAAGC
Statistics
Matches: 164, Mismatches: 47, Indels: 48
0.63 0.18 0.19
Matches are distributed among these distances:
36 28 0.17
37 38 0.23
38 22 0.13
39 40 0.24
40 35 0.21
41 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (40 bp):
TAAAAACAATCTTAAGTGAAATGAAATATCTTCTTTTGAG
Found at i:18421 original size:36 final size:36
Alignment explanation
Indices: 18373--18483 Score: 116
Period size: 36 Copynumber: 3.0 Consensus size: 36
18363 TTATTTCGGG
18373 TAAAACTATCTCAAGCGAGACAAAGTTTGTTTTAAGA
1 TAAAACTATCTCAAGCGAGACAAAGTTTGTTTTAA-A
* * * *
18410 -AAAACAATCTCAAGTGAGATAAAGCCTTTGTATTAAA
1 TAAAACTATCTCAAGCGAGACAAAG--TTTGTTTTAAA
* * * *
18447 TGAGACTATCTCAAGCGAGACAAAATTTGTTTGAAA
1 TAAAACTATCTCAAGCGAGACAAAGTTTGTTTTAAA
18483 T
1 T
18484 GTTGAATTTG
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
36 31 0.53
37 1 0.02
38 27 0.46
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (36 bp):
TAAAACTATCTCAAGCGAGACAAAGTTTGTTTTAAA
Found at i:24045 original size:26 final size:26
Alignment explanation
Indices: 24016--24065 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
24006 AAATGTACCT
24016 TCAAAAGAAAACACAATATAAGCTCC
1 TCAAAAGAAAACACAATATAAGCTCC
24042 TCAAAAGAAAACACAATATAAGCT
1 TCAAAAGAAAACACAATATAAGCT
24066 AAGGTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (26 bp):
TCAAAAGAAAACACAATATAAGCTCC
Found at i:25940 original size:2 final size:2
Alignment explanation
Indices: 25933--25961 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25923 AAACTGAAAC
25933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25962 ATAATTCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26285 original size:17 final size:17
Alignment explanation
Indices: 26237--26323 Score: 77
Period size: 17 Copynumber: 5.2 Consensus size: 17
26227 TTGCATTTAA
* *
26237 TAAGTATGTTGTTCATT
1 TAAGCATGTAGTTCATT
* * *
26254 AAAGCATGCATTTCATT
1 TAAGCATGTAGTTCATT
26271 TAAGCATGTAGTTCATT
1 TAAGCATGTAGTTCATT
* * *
26288 TAGGGAAGTAGTTCATT
1 TAAGCATGTAGTTCATT
* *
26305 TATGCATCTAG-TCATT
1 TAAGCATGTAGTTCATT
26321 TAA
1 TAA
26324 TAAACTACTT
Statistics
Matches: 54, Mismatches: 16, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
16 7 0.13
17 47 0.87
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (17 bp):
TAAGCATGTAGTTCATT
Found at i:29736 original size:17 final size:17
Alignment explanation
Indices: 29713--29764 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
29703 GAATAAAGTA
*
29713 AGTTCATTAATTAAATT
1 AGTTCATTAATTAAACT
* * *
29730 GGTTCATTCATCAAACT
1 AGTTCATTAATTAAACT
*
29747 AGTTCATTTATTAAACT
1 AGTTCATTAATTAAACT
29764 A
1 A
29765 CCTCTTAATT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (17 bp):
AGTTCATTAATTAAACT
Found at i:31436 original size:26 final size:26
Alignment explanation
Indices: 31402--31454 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31392 AATTTCTTAA
*
31402 ATTAGTTCACCCTAACATTCTAAATT
1 ATTAGTTCACCCTAACAATCTAAATT
* *
31428 ATTATTTCACTCTAACAATCTAAATT
1 ATTAGTTCACCCTAACAATCTAAATT
31454 A
1 A
31455 ATTCTTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.40
Consensus pattern (26 bp):
ATTAGTTCACCCTAACAATCTAAATT
Found at i:31717 original size:21 final size:20
Alignment explanation
Indices: 31691--31788 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
31681 ATCAGTTTCC
31691 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTG
* **
31712 AAAATCGCAATGCGATAGT-
1 AAAATCGCAACGCGATTTTG
** *
31731 ACAAATTCGCATTGCGATTTTCA
1 A-AAA-TCGCAACGCGATTTT-G
* *
31754 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTG
31774 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
31789 ACACATAAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.02
20 19 0.31
21 38 0.61
22 3 0.05
23 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTG
Found at i:31779 original size:20 final size:20
Alignment explanation
Indices: 31755--32004 Score: 261
Period size: 20 Copynumber: 12.5 Consensus size: 20
31745 CGATTTTCAA
** *
31755 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGAATCCGT
*
31775 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGCGAATC-CGT
*
31795 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
*
31815 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
**
31835 AAATCGCAACGC-ATATGGGT
1 AAATCGCAACGCGA-ATCCGT
* *
31855 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
31875 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
31895 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
31915 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
31935 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
31955 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
* *
31975 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
*
31995 AAATCACAAC
1 AAATCGCAAC
32005 ACTGAAATTT
Statistics
Matches: 198, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
20 197 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGAATCCGT
Found at i:32726 original size:24 final size:23
Alignment explanation
Indices: 32687--32732 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
32677 AAATTTGGTC
32687 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGA-TTTGATA
32711 TTGGTCAATA-CACGGATTTGAT
1 TTGGTCAATATC-CGGATTTGAT
32733 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (23 bp):
TTGGTCAATATCCGGATTTGATA
Found at i:32924 original size:12 final size:12
Alignment explanation
Indices: 32907--32931 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32897 ATATAATCCT
32907 GAAGAAGAAAAA
1 GAAGAAGAAAAA
32919 GAAGAAGAAAAA
1 GAAGAAGAAAAA
32931 G
1 G
32932 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:35308 original size:19 final size:19
Alignment explanation
Indices: 35268--35365 Score: 134
Period size: 19 Copynumber: 5.4 Consensus size: 19
35258 GATTCTCTCG
35268 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
35288 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
35307 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
35321 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
35340 TTGCGATTTTCATTTTGCA
1 TTGCGATTTTCATTTCGCA
35359 TTGCGAT
1 TTGCGAT
35366 AGTCAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
14 6 0.09
16 7 0.10
17 7 0.10
19 35 0.50
20 15 0.21
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:35316 original size:53 final size:52
Alignment explanation
Indices: 35249--35365 Score: 216
Period size: 53 Copynumber: 2.2 Consensus size: 52
35239 GAAATGAAAA
35249 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
35302 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
*
35354 TTGCATTGCGAT
1 TCGCATTGCGAT
35366 AGTCAATTTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 29 0.46
53 34 0.54
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (52 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
Found at i:35491 original size:14 final size:14
Alignment explanation
Indices: 35472--35508 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
35462 CATCAATTAC
35472 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
35486 ACAAATCATCTTTT
1 ACAAATCAACTTTT
35500 ACAAATCAA
1 ACAAATCAA
35509 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:37507 original size:14 final size:14
Alignment explanation
Indices: 37488--37544 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
37478 GCGAAATGAA
*
37488 AATCGCAACGACAG
1 AATCGCAACGAAAG
37502 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
37519 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
37535 AATCGCAACG
1 AATCGCAACG
37545 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:37515 original size:33 final size:33
Alignment explanation
Indices: 37469--37561 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
37459 GCGAAACCAA
*
37469 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
37502 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
37535 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
37562 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:37526 original size:19 final size:19
Alignment explanation
Indices: 37432--37566 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
37422 TAGTTTACTT
* *
37432 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
37452 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
37471 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
37490 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
37504 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
37523 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
37537 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
37556 TCGCAATGCGA
1 TCGCAACGCGA
37567 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:37584 original size:19 final size:19
Alignment explanation
Indices: 37562--37690 Score: 107
Period size: 19 Copynumber: 7.3 Consensus size: 19
37552 AAAATCGCAA
*
37562 TGCGATTTTGGTTTCACGT
1 TGCGATTTTGGTTTCGCGT
*
37581 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
37595 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
37614 TGTGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
37628 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
37647 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
37666 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
37686 TGCGA
1 TGCGA
37691 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
14 21 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 47 0.53
20 13 0.15
ACGTcount: A:0.09, C:0.16, G:0.28, T:0.47
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:37604 original size:33 final size:33
Alignment explanation
Indices: 37562--37653 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
37552 AAAATCGCAA
*
37562 TGCGATTTTGGTTTCACGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
*
37595 TGCGATTTTGGTTTCGCGTTGTGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
37628 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
37654 TTGGTTTCGC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
33 51 0.96
34 2 0.04
ACGTcount: A:0.09, C:0.17, G:0.27, T:0.47
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:37893 original size:93 final size:93
Alignment explanation
Indices: 37734--38207 Score: 930
Period size: 93 Copynumber: 5.1 Consensus size: 93
37724 TTGAATGGAT
37734 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
37799 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
37827 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTATAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
37892 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
37920 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
37985 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
38013 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
38078 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
38106 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
38171 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
38199 AAATTTACT
1 AAATTTACT
38208 AAGCAATCTA
Statistics
Matches: 378, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 378 1.00
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:39931 original size:14 final size:14
Alignment explanation
Indices: 39912--40001 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
39902 TTGAAATGAA
39912 AATCGCAACGAGAG
1 AATCGCAACGAGAG
39926 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
39943 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
39959 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
39978 AATCGCAACGAGAG
1 AATCGCAACGAGAG
39992 AATCGCAACG
1 AATCGCAACG
40002 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.41, C:0.24, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:39949 original size:33 final size:33
Alignment explanation
Indices: 39904--40018 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
39894 TCTTTTGGTT
39904 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
39937 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
39970 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
40003 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
40019 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:39950 original size:19 final size:18
Alignment explanation
Indices: 39911--40023 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
39901 GTTGAAATGA
39911 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
39926 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
39943 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
39959 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
39976 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
39992 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
40009 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
40024 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:40054 original size:14 final size:14
Alignment explanation
Indices: 40035--40091 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
40025 TTTGGTTTCG
40035 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
40049 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
40068 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
40082 CGTTGCGATT
1 CGTTGCGATT
40092 GTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:40067 original size:33 final size:33
Alignment explanation
Indices: 40019--40099 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
40009 AAAATCGCAA
**
40019 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
40052 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
*
40085 TGCGATTGTCATTTC
1 TGCGATTTTCATTTC
40100 TCTCGTTGCG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.09, C:0.22, G:0.23, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:40102 original size:21 final size:21
Alignment explanation
Indices: 40076--40151 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
40066 CGCGTTGCGA
40076 TTCTCTCGTTGCGATTGTCAT
1 TTCTCTCGTTGCGATTGTCAT
**
40097 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTGTCAT
*
40117 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTGTCAT
*
40138 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
40152 CTCTTCTGCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTGTCAT
Found at i:40132 original size:41 final size:41
Alignment explanation
Indices: 40075--40152 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
40065 TCGCGTTGCG
*
40075 ATTCTCTCGTTGCGATTGTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGACAGTC
*
40116 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGAC
40153 TCTTCTGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.44
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTGTCATTTATCTCGTTGCGACAGTC
Found at i:40278 original size:33 final size:33
Alignment explanation
Indices: 40231--40301 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
40221 AATACTAACT
* *
40231 TGAAAATCGGAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
40264 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
40297 TGAAA
1 TGAAA
40302 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:40535 original size:22 final size:22
Alignment explanation
Indices: 40483--40537 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
40473 TGGTTGTGAG
**
40483 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
40505 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
40527 GGATTTCTTCG
1 GGATTTCTTCG
40538 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:40702 original size:39 final size:40
Alignment explanation
Indices: 40659--40740 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
40649 TACGCGTAGC
*
40659 GATTATAATGGCGCTTTA-A-ATATCGCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGAT-TCGCGTTGCGATTTACG
** * *
40698 GATTATCGTTGCGATTTACAGATTCTCGTTGCGATTTACG
1 GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
40738 GAT
1 GAT
40741 ACGCGTTGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 14 0.39
40 20 0.56
41 2 0.06
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (40 bp):
GATTATAATGGCGATTTACAGATTCGCGTTGCGATTTACG
Found at i:40875 original size:20 final size:20
Alignment explanation
Indices: 40682--40874 Score: 219
Period size: 20 Copynumber: 9.7 Consensus size: 20
40672 CTTTAAATAT
40682 CGCGTTGCGATTTACGGATTA
1 CGCGTTGCGATTTACGGA-TA
* * *
40703 -TCGTTGCGATTTACAGATT
1 CGCGTTGCGATTTACGGATA
*
40722 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
40742 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
40762 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
40782 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
40802 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
40822 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
40842 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
40862 CGCGTTGCGATTT
1 CGCGTTGCGATTT
40875 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
19 1 0.01
20 145 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:40891 original size:21 final size:21
Alignment explanation
Indices: 40861--40943 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
40851 ATTTTCATAT
*
40861 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
40882 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
40903 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
40924 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
40944 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:40934 original size:42 final size:43
Alignment explanation
Indices: 40841--40939 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
40831 ATTTATGTGT
* *
40841 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
40882 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
40924 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
40940 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:41133 original size:16 final size:18
Alignment explanation
Indices: 41114--41146 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
41104 AAATATATTT
41114 TTTAAA-AATA-ATATAA
1 TTTAAAGAATATATATAA
41130 TTTAAAGAATATATATA
1 TTTAAAGAATATATATA
41147 TATATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
TTTAAAGAATATATATAA
Found at i:41145 original size:2 final size:2
Alignment explanation
Indices: 41138--41163 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
41128 AATTTAAAGA
41138 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
41164 GAATCAGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44983 original size:21 final size:21
Alignment explanation
Indices: 44957--45000 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
44947 GATCTATAAC
* *
44957 TTATTTTATTTAA-AAATATTA
1 TTATTTGAATTAATAAAT-TTA
44978 TTATTTGAATTAATAAATTTA
1 TTATTTGAATTAATAAATTTA
44999 TT
1 TT
45001 TAAAATTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TTATTTGAATTAATAAATTTA
Found at i:45165 original size:20 final size:20
Alignment explanation
Indices: 45121--45272 Score: 105
Period size: 20 Copynumber: 7.6 Consensus size: 20
45111 ATGACCAAAT
*
45121 AAAATCGCAACGCGATAT-C
1 AAAATCGCAACGCGATATAG
*
45140 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATATAG
** * *
45160 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGCGATATAG
*
45180 AAAATCGCAACG-G-TCAAAAG
1 AAAATCGCAACGCGAT--ATAG
**
45200 AAAATCGCAACGCGAGCT-TCC
1 AAAATCGCAACGCGA--TATAG
** *
45221 AAGTTCGCAACGCGATTTAG
1 AAAATCGCAACGCGATATAG
* * *
45241 AAAATCGCAACGCTAAAAAG
1 AAAATCGCAACGCGATATAG
45261 AAAATCGCAACG
1 AAAATCGCAACG
45273 GTCAAAAGAA
Statistics
Matches: 103, Mismatches: 22, Indels: 15
0.74 0.16 0.11
Matches are distributed among these distances:
19 18 0.17
20 70 0.68
21 14 0.14
24 1 0.01
ACGTcount: A:0.44, C:0.22, G:0.18, T:0.15
Consensus pattern (20 bp):
AAAATCGCAACGCGATATAG
Found at i:45371 original size:6 final size:6
Alignment explanation
Indices: 45360--45389 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
45350 GACACGTATT
*
45360 ACCACG ACCACG ACCACG ACCATG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG
45390 GTCAAAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.47, G:0.17, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:45430 original size:6 final size:6
Alignment explanation
Indices: 45419--45461 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
45409 AAAATTTGTT
45419 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
45462 AATACGTGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.16, G:0.49, T:0.35
Consensus pattern (6 bp):
TCGTGG
Found at i:45568 original size:20 final size:20
Alignment explanation
Indices: 45541--45718 Score: 214
Period size: 20 Copynumber: 8.8 Consensus size: 20
45531 TTTATTTATA
*
45541 AATCGCATTGCGATTCTCTC
1 AATCGCATTGCGATTCTATC
* *
45561 AGTCGCATTGCGATTCTCTC
1 AATCGCATTGCGATTCTATC
*
45581 AGTCGCATTGCGATTTTCT-TC
1 AATCGCATTGCGA--TTCTATC
* * * *
45602 TAAATCGCGTTGCTACTCTCTC
1 --AATCGCATTGCGATTCTATC
* *
45624 AATCGCATTGCGATTATATA
1 AATCGCATTGCGATTCTATC
*
45644 AATCGCATTGCGATTCTATA
1 AATCGCATTGCGATTCTATC
45664 AATCGCATTGCGATTCTATC
1 AATCGCATTGCGATTCTATC
45684 AATCGCATTGCGATTCTATC
1 AATCGCATTGCGATTCTATC
45704 AATCGCATTGCGATT
1 AATCGCATTGCGATT
45719 TTCTTCTAAA
Statistics
Matches: 140, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
20 119 0.85
21 5 0.04
22 6 0.04
23 10 0.07
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (20 bp):
AATCGCATTGCGATTCTATC
Found at i:45778 original size:20 final size:20
Alignment explanation
Indices: 45753--45806 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
45743 TGGAAGCTCG
*
45753 CGTTGCGATTTTCTTTTGAC
1 CGTTGCGATTTTCTTTTGAA
*
45773 CGTTGCGATTTTCTTTTTAA
1 CGTTGCGATTTTCTTTTGAA
45793 CGTTGCGATTTTCT
1 CGTTGCGATTTTCT
45807 AAATCGCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.19, G:0.19, T:0.52
Consensus pattern (20 bp):
CGTTGCGATTTTCTTTTGAA
Found at i:45833 original size:19 final size:20
Alignment explanation
Indices: 45793--45843 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
45783 TTCTTTTTAA
*
45793 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCGAAATCG
*
45813 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCGAAATCG
45832 CGTTGCGATTTT
1 CGTTGCGATTTT
45844 ATTGGTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTTTCGAAATCG
Found at i:47466 original size:17 final size:17
Alignment explanation
Indices: 47444--47478 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
47434 CTTTCATGCC
*
47444 TTAAAACCGTCATTGAT
1 TTAAAACCGCCATTGAT
47461 TTAAAACCGCCATTGAT
1 TTAAAACCGCCATTGAT
47478 T
1 T
47479 ACCCCAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (17 bp):
TTAAAACCGCCATTGAT
Found at i:47904 original size:131 final size:131
Alignment explanation
Indices: 47461--47904 Score: 471
Period size: 131 Copynumber: 3.4 Consensus size: 131
47451 CGTCATTGAT
* * * * ** * *
47461 TTAAAACCGCCATTGATTACCCCAATTGAAATGAAGAGATATCACTATT-TCGTCTTAAAATTCA
1 TTAAAACAGTCATTTATTACTCCAACCGAAATGAAGAGATATTACTATTCT-GTCTTAAAAATCA
* * * ** *
47525 ATATTGATTCAAGTGAAAATGATAATATCAAATGGTTTCCAATCGAGAATAAATGGCCTCTCATG
65 ATATTGATTCGAGAGAAAATGATAATATCAAATGATTTCCAATCGAGAATAAATTACCTCTCATA
47590 CC
130 CC
* * * **
47592 TTAAAGCAGTCATTTATTAC-CTCAAGCGAAATGAAGGGATATTACTATTCCATCTTAAAAATCA
1 TTAAAACAGTCATTTATTACTC-CAACCGAAATGAAGAGATATTACTATTCTGTCTTAAAAATCA
* * * * ** * *
47656 ATAATAACTCGAGAGAAAACGATAATATTTAGTGATTTCCAATCGAGAATAAATTACATCTCATA
65 ATATTGATTCGAGAGAAAATGATAATATCAAATGATTTCCAATCGAGAATAAATTACCTCTCATA
*
47721 GC
130 CC
* * * *
47723 TTAAAACAGTCATTTATTGCTCTAATCGAAAAGAAGAGATATCT-CTATTCTGTCTTAAAAATCA
1 TTAAAACAGTCATTTATTACTCCAACCGAAATGAAGAGATAT-TACTATTCTGTCTTAAAAATCA
* * * *
47787 ATATTGATTGGAGAGAAAATTATAATATCAAATTATTTCCAATCGTGAATAAATTACCTCTCATA
65 ATATTGATTCGAGAGAAAATGATAATATCAAATGATTTCCAATCGAGAATAAATTACCTCTCATA
47852 CC
130 CC
* * * * *
47854 TTAAAACAATTATTTATTACTCCAACCGAAATGAAAATATATTATTATTCT
1 TTAAAACAGTCATTTATTACTCCAACCGAAATGAAGAGATATTACTATTCT
47905 CAATATCGAT
Statistics
Matches: 252, Mismatches: 56, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
130 2 0.01
131 248 0.98
132 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (131 bp):
TTAAAACAGTCATTTATTACTCCAACCGAAATGAAGAGATATTACTATTCTGTCTTAAAAATCAA
TATTGATTCGAGAGAAAATGATAATATCAAATGATTTCCAATCGAGAATAAATTACCTCTCATAC
C
Found at i:48932 original size:19 final size:19
Alignment explanation
Indices: 48905--48941 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
48895 TACAATCTTT
*
48905 TTTCCTTTTTTTAATTTTC
1 TTTCATTTTTTTAATTTTC
*
48924 TTTCATTTTTTTTATTTT
1 TTTCATTTTTTTAATTTT
48942 TAGCTTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCATTTTTTTAATTTTC
Found at i:49466 original size:25 final size:25
Alignment explanation
Indices: 49432--49494 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
49422 CCCATTTACA
49432 TTGTT-CAATTTTTATAACCCATAT
1 TTGTTACAATTTTTATAACCCATAT
49456 TTGTTACAATTTTTATAACCCATAT
1 TTGTTACAATTTTTATAACCCATAT
49481 TTGTTACAATTTTT
1 TTGTTACAATTTTT
49495 TTCTTATGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 5 0.13
25 33 0.87
ACGTcount: A:0.29, C:0.14, G:0.05, T:0.52
Consensus pattern (25 bp):
TTGTTACAATTTTTATAACCCATAT
Found at i:49847 original size:3 final size:3
Alignment explanation
Indices: 49839--49884 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
49829 CTACACAAAT
49839 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
49885 GGTGTCAGGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:50451 original size:132 final size:134
Alignment explanation
Indices: 50023--50889 Score: 882
Period size: 133 Copynumber: 6.5 Consensus size: 134
50013 ATCTGCTCTA
* * ** ** * **
50023 CTGTTTCTTTAGGGTAAATCAGATCAAGAAACATTGATTTATTCCACTGTTCTTCAGAAAAGATT
1 CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
* * * * *
50088 GAATCGAAGT-AGATTTATTCCACTGCTACTCAGGGAAGATCAAATCTTGAAAGAGAGGGATTTG
66 GAATCG-AGTCAGACTTGTTCCACTACTACTCAAGGAAGATCAAATCTTGAAAAAGAGGGATTTG
50152 TTCCG
130 TTCCG
* * * *
50157 CTGTTTCTTGAGGAAAAATCAGATCTGGAAATATTGATTCATTTCACTGTTCTTTAGGGAAGATT
1 CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
* * ** * * * * *
50222 AAATCGAG-GATGACTTGTTCCACTGTTACTCAGGGAAGATCAAGTCTTGAAAGATAGGGATTTA
66 GAATCGAGTCA-GACTTGTTCCACTACTACTCAAGGAAGATCAAATCTTGAAAAAGAGGGATTTG
50286 TTCCG
130 TTCCG
* * *
50291 CTTTTTCTTGAGGGAAAATCATATCTGGAAATGTTGATTTATTCCACTGTTCTTCA-GGAAGATT
1 CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
* * * **
50355 GAATCGAGTCAGACTTGTTCCACTACTACTCATGGAATATCAGAT-TTGAAAAAGAGGGACATGT
66 GAATCGAGTCAGACTTGTTCCACTACTACTCAAGGAAGATCAAATCTTGAAAAAGAGGGATTTGT
50419 TCCG
131 TCCG
* * * * *
50423 CTGCTTCTTGAGGGAAAATCAGACCTGGAAATGTTTATTCATTCTACTATTCTTCAGGGAAGATT
1 CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
* * * * * *
50488 GAATCGAGGCA-ACTTGTTTCACTATTACT-AAGAGAAAATCAAGTCTTGAAAGAGAGGGATTTG
66 GAATCGAGTCAGACTTGTTCCACTACTACTCAAG-GAAGATCAAATCTTGAAAAAGAGGGATTTG
* **
50551 TACTA
130 TTCCG
* * *
50556 CT-TTTCTTGAGGGAAAATCAGA-CTTGGAAATGTTGATTCATTCCATTATTCTTCAGGGAATAT
1 CTGTTTCTTGAGGGAAAATCAGATC-TGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGAT
* * ** * * * * * *
50619 TGAATCCA-TACAAACTTGTTCCACTGTTACTCAAAGACGATTAAATC-TAAAAAAGTGGGATCT
65 TGAATCGAGT-CAGACTTGTTCCACTACTACTCAAGGAAGATCAAATCTTGAAAAAGAGGGATTT
50682 GTTCCG
129 GTTCCG
* *
50688 CTGCTTCGTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
1 CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
* * * *
50753 GAATCGAGGT-AGACTTGTTCTACTACTACTC-AGAAAAGATCAAATC-TAAAAAAGAGGGATAT
66 GAATCGA-GTCAGACTTGTTCCACTACTACTCAAG-GAAGATCAAATCTTGAAAAAGAGGGATTT
*
50815 GTTCCT
129 GTTCCG
* * * * * *
50821 ATGATTCTTGAGGG-AAATCAGATCTGGAAATGTTAATTCATTCCATTAGTACTT-GGGGAAGAT
1 CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACT-GTTCTTCAGGGAAGAT
50884 TGAATC
65 TGAATC
50890 TGAAAGAGTA
Statistics
Matches: 613, Mismatches: 104, Indels: 34
0.82 0.14 0.05
Matches are distributed among these distances:
131 3 0.00
132 216 0.35
133 229 0.37
134 164 0.27
135 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (134 bp):
CTGTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGGGAAGATT
GAATCGAGTCAGACTTGTTCCACTACTACTCAAGGAAGATCAAATCTTGAAAAAGAGGGATTTGT
TCCG
Found at i:50690 original size:265 final size:264
Alignment explanation
Indices: 50020--50889 Score: 880
Period size: 265 Copynumber: 3.3 Consensus size: 264
50010 AGGATCTGCT
* * ** ** * * * *
50020 CTACTGTTTCTTTAGGGTAAATCAGATCAAGAAACATTGATTTATTCCACTGTTCTTCAGAAAAG
1 CTACT-TTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCATTATTCTTCAG-GAAG
* * * * * ** * *
50085 ATTGAATCGAAGT-AGATTTATTCCACTGCTACTCAGGGAAGATCAAATCTTGAAAGAGAGGGAT
64 ATTGAATC-CAGTCAAACTTGTTCCACTACTACTCAAAGAAGATCAAATC-TAAAAAAGAGGGAT
* * * * *
50149 TTGTTCCGCTGTTTCTTGAGGAAAAATCAGATCTGGAAATATTGATTCATT-TCACTGTTCTTTA
127 CTGTTCCGCTGCTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCT-ACTGTTCTTCA
* * * * * *
50213 GGGAAGATTAAATCGAGGATGACTTGTTCCACTGTTACTCAGGGAAGATCAAGTCTTGAAAGATA
191 GGGAAGATTGAATCGAGGA-GACTTGTTTCACTATTACTCAGAGAAAATCAAGTCTTGAAAGAGA
* *
50278 GGGATTTATT
255 GGGATTTGTA
** * * * *
50288 CCGCTTTTTCTTGAGGGAAAATCATATCTGGAAATGTTGATTTATTCCACTGTTCTTCAGGAAGA
1 CTAC-TTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCATTATTCTTCAGGAAGA
* * ** * * * *
50353 TTGAATCGAGTCAGACTTGTTCCACTACTACTCATGGAATATCAGATTTGAAAAAGAGGGA-CAT
65 TTGAATCCAGTCAAACTTGTTCCACTACTACTCAAAGAAGATCAAATCTAAAAAAGAGGGATC-T
* * *
50417 GTTCCGCTGCTTCTTGAGGGAAAATCAGACCTGGAAATGTTTATTCATTCTACTATTCTTCAGGG
129 GTTCCGCTGCTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCTACTGTTCTTCAGGG
*
50482 AAGATTGAATCGAGGCA-ACTTGTTTCACTATTACTAAGAGAAAATCAAGTCTTGAAAGAGAGGG
194 AAGATTGAATCGAGG-AGACTTGTTTCACTATTACTCAGAGAAAATCAAGTCTTGAAAGAGAGGG
50546 ATTTGTA
258 ATTTGTA
*
50553 CTACTTTTCTTGAGGGAAAATCAGA-CTTGGAAATGTTGATTCATTCCATTATTCTTCAGGGAAT
1 CTACTTTTCTTGAGGGAAAATCAGATC-TGGAAATGTTGATTCATTCCATTATTCTTCA-GGAAG
** * * *
50617 ATTGAATCCA-TACAAACTTGTTCCACTGTTACTCAAAGACGATTAAATCTAAAAAAGTGGGATC
64 ATTGAATCCAGT-CAAACTTGTTCCACTACTACTCAAAGAAGATCAAATCTAAAAAAGAGGGATC
* *
50681 TGTTCCGCTGCTTCGTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCACTGTTCTTCAGG
128 TGTTCCGCTGCTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCTACTGTTCTTCAGG
* * * *
50746 GAAGATTGAATCGAGGTAGACTTG-TTCTACTACTACTCAGA-AAAGATCAAATC-TAAAAAAGA
193 GAAGATTGAATCGAGG-AGACTTGTTTC-ACTATTACTCAGAGAAA-ATCAAGTCTTGAAAGAGA
* *
50808 GGGATATGTTC
255 GGGATTTG-TA
* * * **
50819 CTA-TGATTCTTGAGGG-AAATCAGATCTGGAAATGTTAATTCATTCCATTAGTACTTGGGGAAG
1 CTACT-TTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCATTA-TTCTTCAGGAAG
50882 ATTGAATC
64 ATTGAATC
50890 TGAAAGAGTA
Statistics
Matches: 511, Mismatches: 75, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
263 1 0.00
264 49 0.10
265 240 0.47
266 129 0.25
267 42 0.08
268 49 0.10
269 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (264 bp):
CTACTTTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCCATTATTCTTCAGGAAGAT
TGAATCCAGTCAAACTTGTTCCACTACTACTCAAAGAAGATCAAATCTAAAAAAGAGGGATCTGT
TCCGCTGCTTCTTGAGGGAAAATCAGATCTGGAAATGTTGATTCATTCTACTGTTCTTCAGGGAA
GATTGAATCGAGGAGACTTGTTTCACTATTACTCAGAGAAAATCAAGTCTTGAAAGAGAGGGATT
TGTA
Found at i:51180 original size:133 final size:133
Alignment explanation
Indices: 50922--51167 Score: 352
Period size: 133 Copynumber: 1.8 Consensus size: 133
50912 CTGAGGGAAG
* * *
50922 ATCAGATCTAGAAATGTTGATTTATTCCACTATTCTTAAGGGAAGATTGAATCGAGGAAGAATTG
1 ATCAGATCTAGAAATGTTGATTTATTCCACTATTCTTAAGGGAAAATTAAATCGAGGAAGAATTA
* * *
50987 TTCCACTGTTACTCAAGGAATATCAAATATGAAAAAAAGGGATTTGTTCCACTTTTTCTTGATGA
66 TTCCACTGCTACTCAAGGAAGATCAAATATGAAAAAAAAGGATTTGTTCCACTTTTTCTTGATGA
51052 AAA
131 AAA
* * * *
51055 ATCAGATTTGGAAATGTTGATTTATTCCACTGTTCTTCAA-GGAAAATTAAATCGAGGAAGACTT
1 ATCAGATCTAGAAATGTTGATTTATTCCACTATTCTT-AAGGGAAAATTAAATCGAGGAAGAATT
* *
51119 ATTCCACTGCTACTCAGGGAAGATCAAATCT-AAAAAATAAGGATTTGTT
65 ATTCCACTGCTACTCAAGGAAGATCAAATATGAAAAAA-AAGGATTTGTT
51168 TAGTTGTTTC
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
132 6 0.06
133 91 0.92
134 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (133 bp):
ATCAGATCTAGAAATGTTGATTTATTCCACTATTCTTAAGGGAAAATTAAATCGAGGAAGAATTA
TTCCACTGCTACTCAAGGAAGATCAAATATGAAAAAAAAGGATTTGTTCCACTTTTTCTTGATGA
AAA
Found at i:51338 original size:92 final size:92
Alignment explanation
Indices: 51181--51409 Score: 289
Period size: 92 Copynumber: 2.5 Consensus size: 92
51171 TTGTTTCTTG
* * * * * ** * * *
51181 CAGATCTAGAAATGTGGATTCATTCCACTGTTCCTCAGGGAATATTGAATCTGAAAGAGAGGGAT
1 CAGATCTAGAAATGTTGATTCATTTCACTGTTCTTCAAGGAAGATCAAATATAAAAAAGAGGGAT
*
51246 TTGTTCCACTACTTCTTGAGGGAAGAT
66 TTGTTCCACTACTTATTGAGGGAAGAT
*
51273 CAGATCTAGAAATGTTGATTCATTTCACTGTTCTTCATGGAAGATCAAATATAAAAAAGAGGGAT
1 CAGATCTAGAAATGTTGATTCATTTCACTGTTCTTCAAGGAAGATCAAATATAAAAAAGAGGGAT
* * *
51338 TTGTTCCTCTGCTTATTGAGGGAATAT
66 TTGTTCCACTACTTATTGAGGGAAGAT
* *
51365 CAGATCTGGAAATGTTGATTCA-TTCAGATGTTCTTCAAGGAAGAT
1 CAGATCTAGAAATGTTGATTCATTTCA-CTGTTCTTCAAGGAAGAT
51410 TGAATCGAGT
Statistics
Matches: 119, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
91 4 0.03
92 115 0.97
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (92 bp):
CAGATCTAGAAATGTTGATTCATTTCACTGTTCTTCAAGGAAGATCAAATATAAAAAAGAGGGAT
TTGTTCCACTACTTATTGAGGGAAGAT
Found at i:57055 original size:20 final size:20
Alignment explanation
Indices: 57027--57067 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
57017 AGTTTACTTG
57027 ATCATAAAACCCTTTA-TCT
1 ATCATAAAACCCTTTACTCT
*
57046 ATCATGAAAACCTTTTACTCT
1 ATCAT-AAAACCCTTTACTCT
57067 A
1 A
57068 ATGACCACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.37, C:0.24, G:0.02, T:0.37
Consensus pattern (20 bp):
ATCATAAAACCCTTTACTCT
Found at i:59043 original size:131 final size:131
Alignment explanation
Indices: 58809--59309 Score: 567
Period size: 131 Copynumber: 3.8 Consensus size: 131
58799 ATAATTTTAA
* * * * * * * * *
58809 GAGAGAAAACAATAATATCTAATTATTTACGATCGAGAATAAATGATCTTTCATGCCTTAAAACA
1 GAGAGAAAACGATAATATATAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
* * * * * * * *
58874 ATCATTTATTACCCCAATTGAAATGAAGATATATCACTATTTCTTCTTAAAATTTAATATTGATT
66 TTCATTTATTACTCCAATCGAAATGAAGAAATATCACTATTCCATCTTAAAAATCAATATTGATT
58939 C
131 C
* * * *
58940 GAGAGAAAATGATAATATATAATGATTTCTAATCGAGAATAAATGACCTCCCATGCCTTAAAGCA
1 GAGAGAAAACGATAATATATAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
* * *
59005 TTCATTTATTACTCTAATCGAAATGAAGAAATATCACTATTCCATCTTAAAAATCAATATTAAAT
66 TTCATTTATTACTCCAATCGAAATGAAGAAATATCACTATTCCATCTTAAAAATCAATATTGATT
59070 C
131 C
** * *
59071 GAGAGAAAAAATATAATATATAGTGATTTCCAATCGAAAATAAATGACCTCTCATACCTTAAAGC
1 GAGAG-AAAACGATAATATATAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGC
* * * * * *
59136 ATTCATTTATTGCACTAATCAAAATGAAGAGATATCTA-TATTCCGTCTTAAAAATCAATATTGA
65 ATTCATTTATTACTCCAATCGAAATGAAGAAATATC-ACTATTCCATCTTAAAAATCAATATTGA
*
59200 TTT
129 TTC
* * * *
59203 GAGAGAAAACGTTAATATCA-AATTATTTCCAATCGAGAATAAATGACATCTCATACCTAAAAGC
1 GAGAGAAAACGATAATAT-ATAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGC
* * *
59267 AGTCATTTATTACTCCAACCGAAATGAA-AAGATATTACTATTC
65 ATTCATTTATTACTCCAATCGAAATGAAGAA-ATATCACTATTC
59310 TCAATAACGA
Statistics
Matches: 312, Mismatches: 53, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
130 2 0.01
131 194 0.62
132 115 0.37
133 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (131 bp):
GAGAGAAAACGATAATATATAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
TTCATTTATTACTCCAATCGAAATGAAGAAATATCACTATTCCATCTTAAAAATCAATATTGATT
C
Found at i:59292 original size:263 final size:262
Alignment explanation
Indices: 58809--59309 Score: 630
Period size: 263 Copynumber: 1.9 Consensus size: 262
58799 ATAATTTTAA
* * * * * * * *
58809 GAGAGAAAACAATAATATCTAATTATTTACGATCGAGAATAAATGATCTTTCATGCCTTAAAACA
1 GAGAGAAAAAAATAATATATAATGATTTACAATCGAAAATAAATGACCTCTCATACCTTAAAACA
* ** * * * * *
58874 ATCATTTATTACCCCAATTGAAATGAAGATATATCACTATTTCTTCTTAAAATTTAATATTGATT
66 ATCATTTATTACACCAATCAAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTGATT
* * * * *
58939 CGAGAGAAAATGATAATATATAATGATTTCTAATCGAGAATAAATGACCTCCCATGCCTTAAAGC
131 CGAGAGAAAACGATAATATATAATGATTTCCAATCGAGAATAAATGACATCCCATACCTAAAAGC
* * *
59004 ATTCATTTATTACTCTAATCGAAATGAAGAA-ATATCACTATTCCATCTTAAAAATCAATATTAA
196 AGTCATTTATTACTCCAACCGAAATGAA-AAGATATCACTATTCCATCTTAAAAATCAATATTAA
59068 ATC
260 ATC
* * *
59071 GAGAGAAAAAATATAATATATAGTGATTTCCAATCGAAAATAAATGACCTCTCATACCTTAAAGC
1 GAGAGAAAAAA-ATAATATATAATGATTTACAATCGAAAATAAATGACCTCTCATACCTTAAAAC
* * *
59136 ATTCATTTATTGCACTAATCAAAATGAAGAGATATCTA-TATTCCGTCTTAAAAATCAATATTGA
65 AATCATTTATTACACCAATCAAAATGAAGAGATATC-ACTATTCCGTCTTAAAAATCAATATTGA
* * * *
59200 TTTGAGAGAAAACGTTAATATCA-AATTATTTCCAATCGAGAATAAATGACATCTCATACCTAAA
129 TTCGAGAGAAAACGATAATAT-ATAATGATTTCCAATCGAGAATAAATGACATCCCATACCTAAA
*
59264 AGCAGTCATTTATTACTCCAACCGAAATGAAAAGATATTACTATTC
193 AGCAGTCATTTATTACTCCAACCGAAATGAAAAGATATCACTATTC
59310 TCAATAACGA
Statistics
Matches: 200, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
262 12 0.06
263 186 0.93
264 2 0.01
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (262 bp):
GAGAGAAAAAAATAATATATAATGATTTACAATCGAAAATAAATGACCTCTCATACCTTAAAACA
ATCATTTATTACACCAATCAAAATGAAGAGATATCACTATTCCGTCTTAAAAATCAATATTGATT
CGAGAGAAAACGATAATATATAATGATTTCCAATCGAGAATAAATGACATCCCATACCTAAAAGC
AGTCATTTATTACTCCAACCGAAATGAAAAGATATCACTATTCCATCTTAAAAATCAATATTAAA
TC
Found at i:60334 original size:20 final size:21
Alignment explanation
Indices: 60311--60354 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
60301 AAATACAACC
*
60311 TTTCTTTTA-TTTGTTTTAAT
1 TTTCTTTCATTTTGTTTTAAT
*
60331 TTTCTTTCATTTTTTTTTAAT
1 TTTCTTTCATTTTGTTTTAAT
60352 TTT
1 TTT
60355 TAGAGAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTCTTTCATTTTGTTTTAAT
Found at i:61239 original size:3 final size:3
Alignment explanation
Indices: 61231--61291 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
61221 CTGCACAAAT
61231 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
61279 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
61292 GGTGTCAGGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:63124 original size:36 final size:36
Alignment explanation
Indices: 63084--63180 Score: 135
Period size: 36 Copynumber: 2.7 Consensus size: 36
63074 GATACAATCT
*
63084 GTCCATCATCATTATCACGCCTTTATCATCACCATA
1 GTCCATCATCATTATCACGCCTATATCATCACCATA
63120 GTCCATC-TCCATTATCACGCCTATATCATCACCATA
1 GTCCATCAT-CATTATCACGCCTATATCATCACCATA
* * *
63156 TTCCACCACCA-TATCACGCCTATAT
1 GTCCATCATCATTATCACGCCTATAT
63181 TTTCACCCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
35 15 0.27
36 40 0.73
ACGTcount: A:0.28, C:0.36, G:0.05, T:0.31
Consensus pattern (36 bp):
GTCCATCATCATTATCACGCCTATATCATCACCATA
Found at i:68803 original size:36 final size:36
Alignment explanation
Indices: 68754--68850 Score: 126
Period size: 36 Copynumber: 2.7 Consensus size: 36
68744 GATACAATCT
* *
68754 GTCCATCAT-CATTATCACGCCTTTATCATCACCGTA
1 GTCCATC-TCCATTATCACGCCTATATCATCACCATA
68790 GTCCATCTCCATTATCACGCCTATATCATCACCATA
1 GTCCATCTCCATTATCACGCCTATATCATCACCATA
* * *
68826 TTCCACCACCA-TATCACGCCTATAT
1 GTCCATCTCCATTATCACGCCTATAT
68851 TTTCACCCAC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
35 15 0.27
36 40 0.73
ACGTcount: A:0.27, C:0.36, G:0.06, T:0.31
Consensus pattern (36 bp):
GTCCATCTCCATTATCACGCCTATATCATCACCATA
Found at i:69596 original size:25 final size:25
Alignment explanation
Indices: 69562--69613 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
69552 CTGAATGAAA
69562 CCTAGAATCTATAGCCTAAAACCTC
1 CCTAGAATCTATAGCCTAAAACCTC
69587 CCTAGAATCTATAGCCTAAAACCTC
1 CCTAGAATCTATAGCCTAAAACCTC
69612 CC
1 CC
69614 ATGCTGCCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.35, G:0.08, T:0.23
Consensus pattern (25 bp):
CCTAGAATCTATAGCCTAAAACCTC
Found at i:71940 original size:64 final size:64
Alignment explanation
Indices: 71844--72052 Score: 194
Period size: 65 Copynumber: 3.2 Consensus size: 64
71834 TTTCAAAGGG
* *
71844 ATGCACCGATGCACCAATCCATGCATCGATGCAC-CATTGAATAAATTGAACATCGAATGCATTT
1 ATGCATCGATGCA-CAAGCCATGCATCGATGCACTCATTGAAT-AATTGAACATCGAATGCATTT
71908 T
64 T
* * ** ** *
71909 ATGCATCGATGCATATA-CCATGCATCAATGCACTCAAGGTTTTA-TGAAAACATCGAATGCATT
1 ATGCATCGATGCACA-AGCCATGCATCGATGCACTCATTGAATAATTG--AACATCGAATGCATT
*
71972 TG
63 TT
* * * *
71974 ATGCATCGATGCACAAGACATGCATCGATGCACTCA-GGCCAT-TTTGAAACATCGAATGCATTT
1 ATGCATCGATGCACAAGCCATGCATCGATGCACTCATTG-AATAATTG-AACATCGAATGCATTT
72037 T
64 T
72038 ATGCATCGATGCACA
1 ATGCATCGATGCACA
72053 CTTAGTGCAC
Statistics
Matches: 121, Mismatches: 16, Indels: 15
0.80 0.11 0.10
Matches are distributed among these distances:
63 2 0.02
64 52 0.43
65 67 0.55
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (64 bp):
ATGCATCGATGCACAAGCCATGCATCGATGCACTCATTGAATAATTGAACATCGAATGCATTTT
Found at i:72071 original size:64 final size:64
Alignment explanation
Indices: 71892--72052 Score: 220
Period size: 65 Copynumber: 2.5 Consensus size: 64
71882 GAATAAATTG
* * *
71892 AACATCGAATGCATTTTATGCATCGATGCATATACCATGCATCAATGCACTCAAGGTTTTATGAA
1 AACATCGAATGCATTTTATGCATCGATGCACATA-CATGCATCGATGCACTCAAGGATTTATGAA
* *
71957 AACATCGAATGCATTTGATGCATCGATGCACAAGACATGCATCGATGCACTC-AGGCCATTT-TG
1 AACATCGAATGCATTTTATGCATCGATGCAC-ATACATGCATCGATGCACTCAAGG--ATTTATG
72020 -A
63 AA
72021 AACATCGAATGCATTTTATGCATCGATGCACA
1 AACATCGAATGCATTTTATGCATCGATGCACA
72053 CTTAGTGCAC
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
63 1 0.01
64 34 0.39
65 47 0.54
66 5 0.06
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGCATCGATGCACATACATGCATCGATGCACTCAAGGATTTATGAA
Done.