genome.fa.s5004.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005004.1 Hibiscus syriacus cultivar Beakdansim tig00011226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65135

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9590--9621	2	16.0	2	100	0	64	50	0	0	50	1.00
9869--9992	18	6.9	18	87	0	176	26	31	20	20	1.98
9869--9992	54	2.3	54	91	0	194	26	31	20	20	1.98
10814--10871	20	2.6	22	89	10	84	25	22	20	31	1.98
12909--12935	2	13.5	2	100	0	54	51	0	0	48	1.00
13127--13157	2	15.5	2	100	0	62	48	0	0	51	1.00
15086--15112	2	13.5	2	100	0	54	51	0	0	48	1.00
16157--16204	14	3.7	14	78	21	68	14	12	14	58	1.64
16157--16203	24	2.0	24	100	0	94	14	12	12	59	1.61
16231--16295	29	2.2	29	97	0	121	33	3	23	40	1.70
16488--16536	13	3.7	13	81	13	55	4	8	26	61	1.42
16481--16551	24	3.1	22	81	13	90	4	7	23	64	1.36
18043--18109	31	2.2	31	86	5	91	49	7	2	40	1.46
21623--21678	21	2.8	21	82	12	57	55	0	0	44	0.99
21631--21688	19	3.0	18	82	14	55	51	0	0	48	1.00
21671--21727	23	2.5	23	100	0	114	56	0	7	36	1.27
22543--22612	32	2.2	31	92	2	113	37	5	8	48	1.58
27581--27697	27	4.4	27	90	2	164	28	16	15	40	1.88
27581--27697	53	2.2	54	87	1	164	28	16	15	40	1.88
30903--30954	21	2.5	21	81	3	61	38	19	25	17	1.93
30943--31097	20	7.7	20	83	6	161	32	24	18	24	1.97
30963--31097	61	2.2	61	85	0	189	33	24	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31265--31308	22	2.0	22	95	0	79	20	45	15	18	1.85
32945--32989	18	2.5	18	88	0	72	26	44	15	13	1.83
33471--33537	20	3.4	20	81	2	73	38	23	22	14	1.92
33526--33583	14	3.9	14	77	16	53	48	20	17	13	1.81
33510--33600	32	2.8	33	91	3	148	47	19	18	14	1.83
33617--33707	14	5.9	14	69	20	65	12	17	20	49	1.78
33665--33746	19	4.5	19	73	16	84	13	18	20	47	1.82
33612--33723	33	3.4	33	93	1	190	12	18	20	48	1.80
33663--33762	20	5.4	19	72	12	84	14	18	23	45	1.85
34110--34197	41	2.1	42	85	2	124	21	42	14	21	1.89
34599--34632	17	2.0	17	94	0	59	38	11	5	44	1.65
34630--34678	20	2.5	20	100	0	98	38	30	14	16	1.88
34684--34748	19	3.7	19	84	15	95	46	18	21	13	1.84
34767--34804	20	1.9	20	94	0	67	15	21	23	39	1.92
35120--35215	20	4.7	21	72	12	74	19	18	23	37	1.94
35140--35214	20	3.7	20	77	10	80	20	18	25	36	1.95
35120--35217	41	2.4	41	91	0	160	19	18	23	38	1.93
35120--35235	41	2.8	41	86	2	126	19	19	23	37	1.95
42600--42643	2	22.0	2	100	0	88	50	0	0	50	1.00
43049--43112	2	32.0	2	100	0	128	50	0	0	50	1.00
53107--53226	64	1.9	64	94	0	213	43	12	11	32	1.79
53241--53961	200	3.6	200	82	6	792	30	15	13	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56420--56453	17	2.0	17	88	0	50	47	23	0	29	1.52
58042--59990	200	9.7	200	90	0	2738	32	15	14	37	1.88
60356--60404	19	2.6	19	96	0	89	55	10	2	32	1.45
61943--62004	21	3.0	21	90	0	97	3	41	0	54	1.16
62189--62253	32	2.0	33	90	3	105	23	46	0	30	1.53
62253--62282	15	1.9	16	93	6	53	13	33	3	50	1.58
62302--62408	21	5.1	21	93	0	178	15	31	9	42	1.79
64574--65028	182	2.5	181	89	1	662	28	15	13	42	1.85

Tables:   1

The End!