Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005005.1 Hibiscus syriacus cultivar Beakdansim tig00011232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132093

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8544--8639
44
2.2
43
87
9
133
29
25
19
26
1.99
8563--8642
23
3.6
22
75
13
83
27
25
21
26
1.99
10955--11235
138
2.0
139
93
0
483
40
6
13
39
1.71
11445--11491
19
2.5
19
92
0
76
27
27
23
21
1.99
11477--11587
46
2.4
46
80
7
127
29
21
17
31
1.96
11379--11535
83
1.9
84
84
7
212
30
22
17
29
1.96
12354--12384
5
6.0
5
96
3
53
19
3
0
77
0.90
13538--13728
43
4.5
43
76
3
179
32
16
23
27
1.96
17757--17971
82
2.6
81
82
5
243
33
23
14
28
1.94
17789--17971
83
2.2
81
84
4
233
32
23
15
28
1.95
17789--17978
41
4.6
41
70
12
138
32
23
15
28
1.95
23320--23370
16
3.3
16
91
5
79
60
13
9
15
1.58
25018--25062
23
2.0
23
86
0
63
26
26
26
20
1.99
31812--31856
23
2.0
23
86
0
63
26
26
26
20
1.99
34282--34317
18
2.0
18
88
0
54
52
0
16
30
1.44
35462--35544
23
3.6
23
80
8
87
25
16
19
38
1.92
35477--35551
24
3.2
24
86
1
107
26
17
20
36
1.94
36634--36671
20
1.9
20
88
0
58
10
31
34
23
1.89
37508--37608
40
2.4
40
80
11
114
38
16
11
32
1.86
51119--51170
17
3.2
17
75
10
54
32
1
13
51
1.52
51378--51415
15
2.6
15
83
4
51
42
2
0
55
1.14
54390--54467
31
2.5
31
95
0
138
23
11
17
47
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54472--54559
10
9.3
10
75
14
80
57
15
13
12
1.65
54472--54519
20
2.4
20
100
0
96
56
18
14
10
1.66
54507--54551
14
3.3
14
79
17
58
60
13
13
13
1.60
54502--54582
31
2.9
27
81
15
101
61
14
9
13
1.56
57659--57695
19
1.9
19
94
0
65
37
27
10
24
1.88
60102--60126
11
2.3
11
100
0
50
20
8
0
72
1.10
61548--61619
28
2.6
28
82
6
85
25
19
8
47
1.77
63001--63124
17
7.3
16
74
14
74
79
2
14
4
0.99
63018--63118
19
5.4
19
78
10
100
79
0
16
2
0.92
63018--63124
9
12.6
8
74
15
83
79
0
15
3
0.93
64888--65169
2
141.0
2
96
0
519
49
48
0
0
1.11
65173--65219
4
11.8
4
95
0
85
27
51
21
0
1.48
65341--65404
20
3.0
22
69
17
71
26
18
25
29
1.98
65324--65404
42
1.9
42
100
0
162
25
22
23
28
1.99
65324--65390
20
3.2
20
72
15
73
26
23
22
26
2.00
65781--65835
21
2.6
22
76
21
64
36
21
1
40
1.64
66332--66811
139
3.5
139
85
6
697
35
17
22
24
1.95
90224--90276
3
17.7
3
100
0
106
33
0
0
66
0.92
90636--90727
23
4.0
23
86
0
121
36
25
19
18
1.94
95428--95487
21
2.9
21
84
0
75
33
25
21
20
1.97
97396--97485
33
2.7
34
92
3
155
23
16
23
36
1.94
98614--98670
15
3.6
15
75
13
60
29
1
1
66
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102292--102323
2
16.0
2
100
0
64
50
0
0
50
1.00
103069--103258
42
4.5
41
81
3
166
18
26
20
35
1.95
103066--103434
84
4.4
84
80
6
291
17
28
20
32
1.96
103183--103421
42
5.7
42
84
0
307
14
31
20
33
1.92
105253--105329
18
4.3
18
79
0
82
28
25
5
40
1.77
107274--107314
12
3.2
12
87
12
64
14
56
14
14
1.69
107272--107314
14
3.2
14
87
12
72
13
58
13
13
1.64
110577--110608
15
2.1
16
94
5
57
6
25
18
50
1.70
111357--111388
16
2.0
16
93
0
55
34
25
6
34
1.81
111794--111833
12
3.2
12
93
6
71
15
55
15
15
1.71
111793--111833
13
3.2
13
93
6
75
14
56
14
14
1.69
119511--119779
148
1.8
146
89
4
425
48
7
5
39
1.54
119920--119960
16
2.6
16
88
7
57
68
7
0
24
1.15
121597--121687
3
30.7
3
84
6
123
67
0
1
31
0.98
122029--122328
113
2.6
113
96
0
555
27
20
14
37
1.91
122764--122818
22
2.5
22
87
0
83
36
14
14
34
1.87
123185--123296
54
2.1
54
91
0
179
20
25
16
37
1.93
125352--125571
114
1.9
114
93
0
377
30
21
15
32
1.94
126057--126082
11
2.4
11
100
0
52
0
7
0
92
0.39
127828--127866
13
2.8
14
92
7
62
0
20
0
79
0.73
127838--127868
11
2.9
11
95
4
55
0
16
0
83
0.64
128192--128217
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!